Fix #1174 - Prevent serialization exception
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5d540d9208
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@ -255,7 +255,15 @@ public class DateParam extends BaseParamWithPrefix<DateParam> implements /*IQuer
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return b.build();
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return b.build();
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}
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}
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public class DateParamDateTimeHolder extends BaseDateTimeDt {
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public static class DateParamDateTimeHolder extends BaseDateTimeDt {
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/**
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* Constructor
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*/
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public DateParamDateTimeHolder() {
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super();
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}
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@Override
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@Override
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protected TemporalPrecisionEnum getDefaultPrecisionForDatatype() {
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protected TemporalPrecisionEnum getDefaultPrecisionForDatatype() {
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return TemporalPrecisionEnum.SECOND;
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return TemporalPrecisionEnum.SECOND;
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@ -2,9 +2,9 @@ package ca.uhn.fhir.jpa.dao.r4;
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import ca.uhn.fhir.jpa.config.CaptureQueriesListener;
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import ca.uhn.fhir.jpa.config.CaptureQueriesListener;
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import ca.uhn.fhir.jpa.dao.DaoConfig;
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import ca.uhn.fhir.jpa.dao.DaoConfig;
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import ca.uhn.fhir.jpa.model.entity.*;
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import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
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import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
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import ca.uhn.fhir.jpa.searchparam.SearchParameterMap.EverythingModeEnum;
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import ca.uhn.fhir.jpa.searchparam.SearchParameterMap.EverythingModeEnum;
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import ca.uhn.fhir.jpa.model.entity.*;
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import ca.uhn.fhir.jpa.util.TestUtil;
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import ca.uhn.fhir.jpa.util.TestUtil;
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import ca.uhn.fhir.model.api.Include;
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import ca.uhn.fhir.model.api.Include;
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import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
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import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
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@ -14,9 +14,9 @@ import ca.uhn.fhir.rest.api.server.IBundleProvider;
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import ca.uhn.fhir.rest.param.*;
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import ca.uhn.fhir.rest.param.*;
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import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
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import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
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import ca.uhn.fhir.rest.server.exceptions.MethodNotAllowedException;
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import ca.uhn.fhir.rest.server.exceptions.MethodNotAllowedException;
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import com.google.common.collect.Lists;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.hibernate.engine.jdbc.internal.BasicFormatterImpl;
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import org.hl7.fhir.instance.model.api.IAnyResource;
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import org.hl7.fhir.instance.model.api.IAnyResource;
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import org.hl7.fhir.instance.model.api.IBaseResource;
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import org.hl7.fhir.instance.model.api.IBaseResource;
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import org.hl7.fhir.instance.model.api.IIdType;
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import org.hl7.fhir.instance.model.api.IIdType;
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@ -56,6 +56,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
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myDaoConfig.setReuseCachedSearchResultsForMillis(new DaoConfig().getReuseCachedSearchResultsForMillis());
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myDaoConfig.setReuseCachedSearchResultsForMillis(new DaoConfig().getReuseCachedSearchResultsForMillis());
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myDaoConfig.setFetchSizeDefaultMaximum(new DaoConfig().getFetchSizeDefaultMaximum());
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myDaoConfig.setFetchSizeDefaultMaximum(new DaoConfig().getFetchSizeDefaultMaximum());
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myDaoConfig.setAllowContainsSearches(new DaoConfig().isAllowContainsSearches());
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myDaoConfig.setAllowContainsSearches(new DaoConfig().isAllowContainsSearches());
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myDaoConfig.setSearchPreFetchThresholds(new DaoConfig().getSearchPreFetchThresholds());
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}
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}
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@Before
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@Before
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@ -617,7 +618,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
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expect1.setResource(resource);
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expect1.setResource(resource);
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expect1.calculateHashes();
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expect1.calculateHashes();
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assertThat("Got: \"" + results.toString()+"\"", results, containsInAnyOrder(expect0, expect1));
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assertThat("Got: \"" + results.toString() + "\"", results, containsInAnyOrder(expect0, expect1));
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}
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}
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});
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});
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}
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}
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@ -1063,7 +1064,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
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QuantityParam v1 = new QuantityParam(ParamPrefixEnum.GREATERTHAN_OR_EQUALS, 150, "http://bar", "code1");
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QuantityParam v1 = new QuantityParam(ParamPrefixEnum.GREATERTHAN_OR_EQUALS, 150, "http://bar", "code1");
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SearchParameterMap map = new SearchParameterMap().setLoadSynchronous(true).add(param, v1);
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SearchParameterMap map = new SearchParameterMap().setLoadSynchronous(true).add(param, v1);
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IBundleProvider result = myObservationDao.search(map);
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IBundleProvider result = myObservationDao.search(map);
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assertThat("Got: "+ toUnqualifiedVersionlessIdValues(result), toUnqualifiedVersionlessIdValues(result), containsInAnyOrder(id1.getValue()));
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assertThat("Got: " + toUnqualifiedVersionlessIdValues(result), toUnqualifiedVersionlessIdValues(result), containsInAnyOrder(id1.getValue()));
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}
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}
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}
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}
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@ -1095,7 +1096,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
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CompositeParam<TokenParam, QuantityParam> val = new CompositeParam<>(v0, v1);
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CompositeParam<TokenParam, QuantityParam> val = new CompositeParam<>(v0, v1);
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SearchParameterMap map = new SearchParameterMap().setLoadSynchronous(true).add(param, val);
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SearchParameterMap map = new SearchParameterMap().setLoadSynchronous(true).add(param, val);
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IBundleProvider result = myObservationDao.search(map);
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IBundleProvider result = myObservationDao.search(map);
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assertThat("Got: "+ toUnqualifiedVersionlessIdValues(result), toUnqualifiedVersionlessIdValues(result), containsInAnyOrder(id2.getValue()));
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assertThat("Got: " + toUnqualifiedVersionlessIdValues(result), toUnqualifiedVersionlessIdValues(result), containsInAnyOrder(id2.getValue()));
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}
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}
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{
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{
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TokenParam v0 = new TokenParam("http://foo", "code1");
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TokenParam v0 = new TokenParam("http://foo", "code1");
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@ -1143,6 +1144,40 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
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}
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}
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/**
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* See #1174
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*/
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@Test
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public void testSearchDateInSavedSearch() {
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for (int i = 1; i <= 9; i++) {
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Patient p1 = new Patient();
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p1.getBirthDateElement().setValueAsString("1980-01-0" + i);
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String id1 = myPatientDao.create(p1).getId().toUnqualifiedVersionless().getValue();
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}
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myDaoConfig.setSearchPreFetchThresholds(Lists.newArrayList(3, 6, 10));
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{
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// Don't load synchronous
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SearchParameterMap map = new SearchParameterMap();
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map.setLastUpdated(new DateRangeParam().setUpperBound(new DateParam(ParamPrefixEnum.LESSTHAN, "2022-01-01")));
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IBundleProvider found = myPatientDao.search(map);
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Set<String> dates = new HashSet<>();
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for (int i = 0; i < 9; i++) {
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Patient nextResource = (Patient) found.getResources(i, i + 1).get(0);
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dates.add(nextResource.getBirthDateElement().getValueAsString());
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}
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assertThat(dates, hasItems(
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"1980-01-01",
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"1980-01-09"
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));
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assertFalse(map.isLoadSynchronous());
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assertNull(map.getLoadSynchronousUpTo());
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}
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}
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/**
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/**
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* #222
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* #222
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*/
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*/
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@ -2194,16 +2229,16 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
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List<String> queries = CaptureQueriesListener
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List<String> queries = CaptureQueriesListener
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.getLastNQueries()
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.getLastNQueries()
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.stream()
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.stream()
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.filter(t->t.getThreadName().equals("main"))
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.filter(t -> t.getThreadName().equals("main"))
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.filter(t -> t.getSql(false, false).toLowerCase().contains("select"))
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.filter(t -> t.getSql(false, false).toLowerCase().contains("select"))
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.filter(t -> t.getSql(false, false).toLowerCase().contains("token"))
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.filter(t -> t.getSql(false, false).toLowerCase().contains("token"))
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.map(t-> t.getSql(true, true))
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.map(t -> t.getSql(true, true))
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.collect(Collectors.toList());
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.collect(Collectors.toList());
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ourLog.info("Queries:\n {}", queries.stream().findFirst());
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ourLog.info("Queries:\n {}", queries.stream().findFirst());
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String searchQuery = queries.get(0);
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String searchQuery = queries.get(0);
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assertEquals(searchQuery,3, StringUtils.countMatches(searchQuery.toUpperCase(), "HFJ_SPIDX_TOKEN"));
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assertEquals(searchQuery, 3, StringUtils.countMatches(searchQuery.toUpperCase(), "HFJ_SPIDX_TOKEN"));
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assertEquals(searchQuery, 5, StringUtils.countMatches(searchQuery.toUpperCase(), "LEFT OUTER JOIN"));
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assertEquals(searchQuery, 5, StringUtils.countMatches(searchQuery.toUpperCase(), "LEFT OUTER JOIN"));
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}
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}
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@ -3362,7 +3397,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
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"Observation/YES21",
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"Observation/YES21",
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"Observation/YES22",
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"Observation/YES22",
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"Observation/YES23"
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"Observation/YES23"
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));
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));
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}
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}
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private void createObservationWithEffective(String theId, String theEffective) {
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private void createObservationWithEffective(String theId, String theEffective) {
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@ -339,6 +339,11 @@
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of unneccesary joins were introduced to the generated SQL query, harming
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of unneccesary joins were introduced to the generated SQL query, harming
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performance. This has been fixed.
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performance. This has been fixed.
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</action>
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</action>
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<action type="fix">
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A serialization error when performing some searches in the JPA server
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using data parameters has been fixed. Thanks to GitHub user
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@PickOneFish for reporting!
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</action>
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</release>
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</release>
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<release version="3.6.0" date="2018-11-12" description="Food">
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<release version="3.6.0" date="2018-11-12" description="Food">
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<action type="add">
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<action type="add">
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