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hapi-fhir
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Merge branch 'master' of github.com:jamesagnew/hapi-fhir

This commit is contained in:
James Agnew 2018-10-30 15:23:00 -04:00
parent 6b1ea5b989 3d008aee5d
commit 600f4585d1
15 changed files with 2824 additions and 928 deletions
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7
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/ISupportsUndeclaredExtensions.java
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@ -20,10 +20,10 @@ package ca.uhn.fhir.model.api;
* #L%
*/
import java.util.List;
import org.hl7.fhir.instance.model.api.IBaseDatatype;
import java.util.List;
public interface ISupportsUndeclaredExtensions extends IElement {
/**
@ -42,7 +42,8 @@ public interface ISupportsUndeclaredExtensions extends IElement {
/**
* Returns an <b>immutable</b> list containing all extensions (modifier and non-modifier).
*
* @see #getUndeclaredExtensions() To return a mutable list which may be used to remove extensions
* @see #getUndeclaredExtensions() To return a mutable list which may be used to remove undeclared non-modifier extensions
* @see #getUndeclaredModifierExtensions() To return a mutable list which may be used to remove undeclared modifier extensions
*/
List<ExtensionDt> getAllUndeclaredExtensions();

353
hapi-fhir-base/src/main/java/ca/uhn/fhir/util/FhirTerser.java
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@ -1,36 +1,5 @@
package ca.uhn.fhir.util;
import static org.apache.commons.lang3.StringUtils.defaultString;
import static org.apache.commons.lang3.StringUtils.isBlank;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
/*
* #%L
* HAPI FHIR - Core Library
* %%
* Copyright (C) 2014 - 2018 University Health Network
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import java.util.*;
import java.util.function.Predicate;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import org.apache.commons.lang3.Validate;
import org.hl7.fhir.instance.model.api.*;
import ca.uhn.fhir.context.*;
import ca.uhn.fhir.context.BaseRuntimeElementDefinition.ChildTypeEnum;
import ca.uhn.fhir.model.api.ExtensionDt;
@ -40,6 +9,35 @@ import ca.uhn.fhir.model.base.composite.BaseContainedDt;
import ca.uhn.fhir.model.base.composite.BaseResourceReferenceDt;
import ca.uhn.fhir.model.primitive.StringDt;
import ca.uhn.fhir.parser.DataFormatException;
import org.apache.commons.lang3.Validate;
import org.hl7.fhir.instance.model.api.*;
import java.util.*;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import static org.apache.commons.lang3.StringUtils.*;
/*
* #%L
* HAPI FHIR - Core Library
* %%
* Copyright (C) 2014 - 2018 University Health Network
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
public class FhirTerser {
@ -60,7 +58,41 @@ public class FhirTerser {
newList.add(theChildDefinition.getElementName());
return newList;
}
private ExtensionDt createEmptyExtensionDt(IBaseExtension theBaseExtension, String theUrl) {
return createEmptyExtensionDt(theBaseExtension, false, theUrl);
}
@SuppressWarnings("unchecked")
private ExtensionDt createEmptyExtensionDt(IBaseExtension theBaseExtension, boolean theIsModifier, String theUrl) {
ExtensionDt retVal = new ExtensionDt(theIsModifier, theUrl);
theBaseExtension.getExtension().add(retVal);
return retVal;
}
private ExtensionDt createEmptyExtensionDt(ISupportsUndeclaredExtensions theSupportsUndeclaredExtensions, String theUrl) {
return createEmptyExtensionDt(theSupportsUndeclaredExtensions, false, theUrl);
}
private ExtensionDt createEmptyExtensionDt(ISupportsUndeclaredExtensions theSupportsUndeclaredExtensions, boolean theIsModifier, String theUrl) {
return theSupportsUndeclaredExtensions.addUndeclaredExtension(theIsModifier, theUrl);
}
private IBaseExtension createEmptyExtension(IBaseHasExtensions theBaseHasExtensions, String theUrl) {
return (IBaseExtension) theBaseHasExtensions.addExtension().setUrl(theUrl);
}
private IBaseExtension createEmptyModifierExtension(IBaseHasModifierExtensions theBaseHasModifierExtensions, String theUrl) {
return (IBaseExtension) theBaseHasModifierExtensions.addModifierExtension().setUrl(theUrl);
}
private ExtensionDt createEmptyModifierExtensionDt(IBaseExtension theBaseExtension, String theUrl) {
return createEmptyExtensionDt(theBaseExtension, true, theUrl);
}
private ExtensionDt createEmptyModifierExtensionDt(ISupportsUndeclaredExtensions theSupportsUndeclaredExtensions, String theUrl) {
return createEmptyExtensionDt(theSupportsUndeclaredExtensions, true, theUrl);
}
/**
* Clones all values from a source object into the equivalent fields in a target object
@ -215,8 +247,12 @@ public class FhirTerser {
return retVal.get(0);
}
@SuppressWarnings("unchecked")
private <T> List<T> getValues(BaseRuntimeElementCompositeDefinition<?> theCurrentDef, Object theCurrentObj, List<String> theSubList, Class<T> theWantedClass) {
return getValues(theCurrentDef, theCurrentObj, theSubList, theWantedClass, false, false);
}
@SuppressWarnings("unchecked")
private <T> List<T> getValues(BaseRuntimeElementCompositeDefinition<?> theCurrentDef, Object theCurrentObj, List<String> theSubList, Class<T> theWantedClass, boolean theCreate, boolean theAddExtension) {
String name = theSubList.get(0);
List<T> retVal = new ArrayList<>();
@ -227,16 +263,67 @@ public class FhirTerser {
extensionUrl = extensionUrl.substring(0, endIndex);
}
List<ExtensionDt> extensions= Collections.emptyList();
if (theCurrentObj instanceof ISupportsUndeclaredExtensions) {
extensions = ((ISupportsUndeclaredExtensions) theCurrentObj).getUndeclaredExtensionsByUrl(extensionUrl);
} else if (theCurrentObj instanceof IBaseExtension) {
extensions = ((IBaseExtension)theCurrentObj).getExtension();
}
if (myContext.getVersion().getVersion().isOlderThan(FhirVersionEnum.DSTU3)) {
// DTSU2
final String extensionDtUrlForLambda = extensionUrl;
List<ExtensionDt> extensionDts = Collections.emptyList();
if (theCurrentObj instanceof ISupportsUndeclaredExtensions) {
extensionDts = ((ISupportsUndeclaredExtensions) theCurrentObj).getUndeclaredExtensions()
.stream()
.filter(t -> t.getUrl().equals(extensionDtUrlForLambda))
.collect(Collectors.toList());
for (ExtensionDt next : extensions) {
if (theWantedClass.isAssignableFrom(next.getClass())) {
retVal.add((T) next);
if (theAddExtension
&& (!(theCurrentObj instanceof IBaseExtension) || (extensionDts.isEmpty() && theSubList.size() == 1))) {
extensionDts.add(createEmptyExtensionDt((ISupportsUndeclaredExtensions) theCurrentObj, extensionUrl));
}
if (extensionDts.isEmpty() && theCreate) {
extensionDts.add(createEmptyExtensionDt((ISupportsUndeclaredExtensions) theCurrentObj, extensionUrl));
}
} else if (theCurrentObj instanceof IBaseExtension) {
extensionDts = ((IBaseExtension) theCurrentObj).getExtension();
if (theAddExtension
&& (extensionDts.isEmpty() && theSubList.size() == 1)) {
extensionDts.add(createEmptyExtensionDt((IBaseExtension) theCurrentObj, extensionUrl));
}
if (extensionDts.isEmpty() && theCreate) {
extensionDts.add(createEmptyExtensionDt((IBaseExtension) theCurrentObj, extensionUrl));
}
}
for (ExtensionDt next : extensionDts) {
if (theWantedClass.isAssignableFrom(next.getClass())) {
retVal.add((T) next);
}
}
} else {
// DSTU3+
final String extensionUrlForLambda = extensionUrl;
List<IBaseExtension> extensions = Collections.emptyList();
if (theCurrentObj instanceof IBaseHasExtensions) {
extensions = ((IBaseHasExtensions) theCurrentObj).getExtension()
.stream()
.filter(t -> t.getUrl().equals(extensionUrlForLambda))
.collect(Collectors.toList());
if (theAddExtension
&& (!(theCurrentObj instanceof IBaseExtension) || (extensions.isEmpty() && theSubList.size() == 1))) {
extensions.add(createEmptyExtension((IBaseHasExtensions) theCurrentObj, extensionUrl));
}
if (extensions.isEmpty() && theCreate) {
extensions.add(createEmptyExtension((IBaseHasExtensions) theCurrentObj, extensionUrl));
}
}
for (IBaseExtension next : extensions) {
if (theWantedClass.isAssignableFrom(next.getClass())) {
retVal.add((T) next);
}
}
}
@ -245,7 +332,92 @@ public class FhirTerser {
retVal = new ArrayList<>();
for (T nextElement : values) {
BaseRuntimeElementCompositeDefinition<?> nextChildDef = (BaseRuntimeElementCompositeDefinition<?>) myContext.getElementDefinition((Class<? extends IBase>) nextElement.getClass());
List<T> foundValues = getValues(nextChildDef, nextElement, theSubList.subList(1, theSubList.size()), theWantedClass);
List<T> foundValues = getValues(nextChildDef, nextElement, theSubList.subList(1, theSubList.size()), theWantedClass, theCreate, theAddExtension);
retVal.addAll(foundValues);
}
}
return retVal;
}
if (name.startsWith("modifierExtension('")) {
String extensionUrl = name.substring("modifierExtension('".length());
int endIndex = extensionUrl.indexOf('\'');
if (endIndex != -1) {
extensionUrl = extensionUrl.substring(0, endIndex);
}
if (myContext.getVersion().getVersion().isOlderThan(FhirVersionEnum.DSTU3)) {
// DSTU2
final String extensionDtUrlForLambda = extensionUrl;
List<ExtensionDt> extensionDts = Collections.emptyList();
if (theCurrentObj instanceof ISupportsUndeclaredExtensions) {
extensionDts = ((ISupportsUndeclaredExtensions) theCurrentObj).getUndeclaredModifierExtensions()
.stream()
.filter(t -> t.getUrl().equals(extensionDtUrlForLambda))
.collect(Collectors.toList());
if (theAddExtension
&& (!(theCurrentObj instanceof IBaseExtension) || (extensionDts.isEmpty() && theSubList.size() == 1))) {
extensionDts.add(createEmptyModifierExtensionDt((ISupportsUndeclaredExtensions) theCurrentObj, extensionUrl));
}
if (extensionDts.isEmpty() && theCreate) {
extensionDts.add(createEmptyModifierExtensionDt((ISupportsUndeclaredExtensions) theCurrentObj, extensionUrl));
}
} else if (theCurrentObj instanceof IBaseExtension) {
extensionDts = ((IBaseExtension) theCurrentObj).getExtension();
if (theAddExtension
&& (extensionDts.isEmpty() && theSubList.size() == 1)) {
extensionDts.add(createEmptyExtensionDt((IBaseExtension) theCurrentObj, extensionUrl));
}
if (extensionDts.isEmpty() && theCreate) {
extensionDts.add(createEmptyExtensionDt((IBaseExtension) theCurrentObj, extensionUrl));
}
}
for (ExtensionDt next : extensionDts) {
if (theWantedClass.isAssignableFrom(next.getClass())) {
retVal.add((T) next);
}
}
} else {
// DSTU3+
final String extensionUrlForLambda = extensionUrl;
List<IBaseExtension> extensions = Collections.emptyList();
if (theCurrentObj instanceof IBaseHasModifierExtensions) {
extensions = ((IBaseHasModifierExtensions) theCurrentObj).getModifierExtension()
.stream()
.filter(t -> t.getUrl().equals(extensionUrlForLambda))
.collect(Collectors.toList());
if (theAddExtension
&& (!(theCurrentObj instanceof IBaseExtension) || (extensions.isEmpty() && theSubList.size() == 1))) {
extensions.add(createEmptyModifierExtension((IBaseHasModifierExtensions) theCurrentObj, extensionUrl));
}
if (extensions.isEmpty() && theCreate) {
extensions.add(createEmptyModifierExtension((IBaseHasModifierExtensions) theCurrentObj, extensionUrl));
}
}
for (IBaseExtension next : extensions) {
if (theWantedClass.isAssignableFrom(next.getClass())) {
retVal.add((T) next);
}
}
}
if (theSubList.size() > 1) {
List<T> values = retVal;
retVal = new ArrayList<>();
for (T nextElement : values) {
BaseRuntimeElementCompositeDefinition<?> nextChildDef = (BaseRuntimeElementCompositeDefinition<?>) myContext.getElementDefinition((Class<? extends IBase>) nextElement.getClass());
List<T> foundValues = getValues(nextChildDef, nextElement, theSubList.subList(1, theSubList.size()), theWantedClass, theCreate, theAddExtension);
retVal.addAll(foundValues);
}
}
@ -256,6 +428,14 @@ public class FhirTerser {
BaseRuntimeChildDefinition nextDef = theCurrentDef.getChildByNameOrThrowDataFormatException(name);
List<? extends IBase> values = nextDef.getAccessor().getValues(theCurrentObj);
if (values.isEmpty() && theCreate) {
IBase value = nextDef.getChildByName(name).newInstance();
nextDef.getMutator().addValue(theCurrentObj, value);
List<IBase> list = new ArrayList<>();
list.add(value);
values = list;
}
if (theSubList.size() == 1) {
if (nextDef instanceof RuntimeChildChoiceDefinition) {
for (IBase next : values) {
@ -286,26 +466,109 @@ public class FhirTerser {
} else {
for (IBase nextElement : values) {
BaseRuntimeElementCompositeDefinition<?> nextChildDef = (BaseRuntimeElementCompositeDefinition<?>) myContext.getElementDefinition(nextElement.getClass());
List<T> foundValues = getValues(nextChildDef, nextElement, theSubList.subList(1, theSubList.size()), theWantedClass);
List<T> foundValues = getValues(nextChildDef, nextElement, theSubList.subList(1, theSubList.size()), theWantedClass, theCreate, theAddExtension);
retVal.addAll(foundValues);
}
}
return retVal;
}
/**
* Returns values stored in an element identified by its path. The list of values is of
* type {@link Object}.
*
* @param theResource The resource instance to be accessed. Must not be null.
* @param thePath The path for the element to be accessed.
* @return A list of values of type {@link Object}.
*/
public List<Object> getValues(IBaseResource theResource, String thePath) {
Class<Object> wantedClass = Object.class;
return getValues(theResource, thePath, wantedClass);
}
/**
* Returns values stored in an element identified by its path. The list of values is of
* type {@link Object}.
*
* @param theResource The resource instance to be accessed. Must not be null.
* @param thePath The path for the element to be accessed.
* @param theCreate When set to <code>true</code>, the terser will create a null-valued element where none exists.
* @return A list of values of type {@link Object}.
*/
public List<Object> getValues(IBaseResource theResource, String thePath, boolean theCreate) {
Class<Object> wantedClass = Object.class;
return getValues(theResource, thePath, wantedClass, theCreate);
}
/**
* Returns values stored in an element identified by its path. The list of values is of
* type {@link Object}.
*
* @param theResource The resource instance to be accessed. Must not be null.
* @param thePath The path for the element to be accessed.
* @param theCreate When set to <code>true</code>, the terser will create a null-valued element where none exists.
* @param theAddExtension When set to <code>true</code>, the terser will add a null-valued extension where one or more such extensions already exist.
* @return A list of values of type {@link Object}.
*/
public List<Object> getValues(IBaseResource theResource, String thePath, boolean theCreate, boolean theAddExtension) {
Class<Object> wantedClass = Object.class;
return getValues(theResource, thePath, wantedClass, theCreate, theAddExtension);
}
/**
* Returns values stored in an element identified by its path. The list of values is of
* type <code>theWantedClass</code>.
*
* @param theResource The resource instance to be accessed. Must not be null.
* @param thePath The path for the element to be accessed.
* @param theWantedClass The desired class to be returned in a list.
* @param <T> Type declared by <code>theWantedClass</code>
* @return A list of values of type <code>theWantedClass</code>.
*/
public <T> List<T> getValues(IBaseResource theResource, String thePath, Class<T> theWantedClass) {
RuntimeResourceDefinition def = myContext.getResourceDefinition(theResource);
List<String> parts = parsePath(def, thePath);
return getValues(def, theResource, parts, theWantedClass);
}
/**
* Returns values stored in an element identified by its path. The list of values is of
* type <code>theWantedClass</code>.
*
* @param theResource The resource instance to be accessed. Must not be null.
* @param thePath The path for the element to be accessed.
* @param theWantedClass The desired class to be returned in a list.
* @param theCreate When set to <code>true</code>, the terser will create a null-valued element where none exists.
* @param <T> Type declared by <code>theWantedClass</code>
* @return A list of values of type <code>theWantedClass</code>.
*/
public <T> List<T> getValues(IBaseResource theResource, String thePath, Class<T> theWantedClass, boolean theCreate) {
RuntimeResourceDefinition def = myContext.getResourceDefinition(theResource);
List<String> parts = parsePath(def, thePath);
return getValues(def, theResource, parts, theWantedClass, theCreate, false);
}
/**
* Returns values stored in an element identified by its path. The list of values is of
* type <code>theWantedClass</code>.
*
* @param theResource The resource instance to be accessed. Must not be null.
* @param thePath The path for the element to be accessed.
* @param theWantedClass The desired class to be returned in a list.
* @param theCreate When set to <code>true</code>, the terser will create a null-valued element where none exists.
* @param theAddExtension When set to <code>true</code>, the terser will add a null-valued extension where one or more such extensions already exist.
* @param <T> Type declared by <code>theWantedClass</code>
* @return A list of values of type <code>theWantedClass</code>.
*/
public <T> List<T> getValues(IBaseResource theResource, String thePath, Class<T> theWantedClass, boolean theCreate, boolean theAddExtension) {
RuntimeResourceDefinition def = myContext.getResourceDefinition(theResource);
List<String> parts = parsePath(def, thePath);
return getValues(def, theResource, parts, theWantedClass, theCreate, theAddExtension);
}
private List<String> parsePath(BaseRuntimeElementCompositeDefinition<?> theElementDef, String thePath) {
List<String> parts = new ArrayList<>();

1008
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirDao.java
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3
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchBuilder.java
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@ -25,6 +25,7 @@ import ca.uhn.fhir.jpa.dao.data.IForcedIdDao;
import ca.uhn.fhir.jpa.dao.data.IResourceIndexedSearchParamUriDao;
import ca.uhn.fhir.jpa.dao.data.IResourceSearchViewDao;
import ca.uhn.fhir.jpa.dao.data.IResourceTagDao;
import ca.uhn.fhir.jpa.dao.index.ResourceIndexedSearchParams;
import ca.uhn.fhir.jpa.entity.*;
import ca.uhn.fhir.jpa.search.JpaRuntimeSearchParam;
import ca.uhn.fhir.jpa.term.IHapiTerminologySvc;
@ -1496,7 +1497,7 @@ public class SearchBuilder implements ISearchBuilder {
}
}
Set<String> uniqueQueryStrings = BaseHapiFhirDao.extractCompositeStringUniquesValueChains(myResourceName, params);
Set<String> uniqueQueryStrings = ResourceIndexedSearchParams.extractCompositeStringUniquesValueChains(myResourceName, params);
if (ourTrackHandlersForUnitTest) {
ourLastHandlerParamsForUnitTest = theParams;
ourLastHandlerMechanismForUnitTest = HandlerTypeEnum.UNIQUE_INDEX;

33
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/index/IndexingSupport.java Normal file
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@ -0,0 +1,33 @@
package ca.uhn.fhir.jpa.dao.index;
import java.util.Map;
import java.util.Set;
import javax.persistence.EntityManager;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.dao.ISearchParamExtractor;
import ca.uhn.fhir.jpa.dao.ISearchParamRegistry;
import ca.uhn.fhir.jpa.dao.data.IForcedIdDao;
import ca.uhn.fhir.jpa.dao.data.IResourceIndexedCompositeStringUniqueDao;
public interface IndexingSupport {
public DaoConfig getConfig();
public ISearchParamExtractor getSearchParamExtractor();
public ISearchParamRegistry getSearchParamRegistry();
public FhirContext getContext();
public EntityManager getEntityManager();
public <R extends IBaseResource> IFhirResourceDao<R> getDao(Class<R> theType);
public Map<Class<? extends IBaseResource>, IFhirResourceDao<?>> getResourceTypeToDao();
public boolean isLogicalReference(IIdType nextId);
public IForcedIdDao getForcedIdDao();
public <R extends IBaseResource> Set<Long> processMatchUrl(String theMatchUrl, Class<R> theResourceType);
public Long translateForcedIdToPid(String theResourceName, String theResourceId);
public String toResourceName(Class<? extends IBaseResource> theResourceType);
public IResourceIndexedCompositeStringUniqueDao getResourceIndexedCompositeStringUniqueDao();
}

852
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/index/ResourceIndexedSearchParams.java Normal file
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@ -0,0 +1,852 @@
package ca.uhn.fhir.jpa.dao.index;
import static org.apache.commons.lang3.StringUtils.compare;
import static org.apache.commons.lang3.StringUtils.isBlank;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.Date;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import java.util.Set;
import javax.persistence.EntityManager;
import org.apache.commons.lang3.StringUtils;
import org.hl7.fhir.instance.model.api.IBase;
import org.hl7.fhir.instance.model.api.IBaseBundle;
import org.hl7.fhir.instance.model.api.IBaseExtension;
import org.hl7.fhir.instance.model.api.IBaseReference;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.model.CanonicalType;
import org.hl7.fhir.r4.model.Reference;
import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.context.RuntimeSearchParam;
import ca.uhn.fhir.jpa.dao.BaseHapiFhirDao;
import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.dao.PathAndRef;
import ca.uhn.fhir.jpa.entity.BaseResourceIndexedSearchParam;
import ca.uhn.fhir.jpa.entity.ForcedId;
import ca.uhn.fhir.jpa.entity.ResourceIndexedCompositeStringUnique;
import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamCoords;
import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamDate;
import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamNumber;
import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamQuantity;
import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamString;
import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamToken;
import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamUri;
import ca.uhn.fhir.jpa.entity.ResourceLink;
import ca.uhn.fhir.jpa.entity.ResourceTable;
import ca.uhn.fhir.jpa.search.JpaRuntimeSearchParam;
import ca.uhn.fhir.model.api.IQueryParameterType;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.rest.api.RestSearchParameterTypeEnum;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.rest.server.exceptions.PreconditionFailedException;
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
import ca.uhn.fhir.util.FhirTerser;
import ca.uhn.fhir.util.UrlUtil;
public class ResourceIndexedSearchParams {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ResourceIndexedSearchParams.class);
// FIXME rename
private final IndexingSupport myIndexingService;
private final Collection<ResourceIndexedSearchParamString> stringParams;
private final Collection<ResourceIndexedSearchParamToken> tokenParams;
private final Collection<ResourceIndexedSearchParamNumber> numberParams;
private final Collection<ResourceIndexedSearchParamQuantity> quantityParams;
private final Collection<ResourceIndexedSearchParamDate> dateParams;
private final Collection<ResourceIndexedSearchParamUri> uriParams;
private final Collection<ResourceIndexedSearchParamCoords> coordsParams;
private final Collection<ResourceIndexedCompositeStringUnique> compositeStringUniques;
private final Collection<ResourceLink> links;
private Set<String> populatedResourceLinkParameters = Collections.emptySet();
public ResourceIndexedSearchParams(IndexingSupport indexingService, ResourceTable theEntity) {
this.myIndexingService = indexingService;
stringParams = new ArrayList<>();
if (theEntity.isParamsStringPopulated()) {
stringParams.addAll(theEntity.getParamsString());
}
tokenParams = new ArrayList<>();
if (theEntity.isParamsTokenPopulated()) {
tokenParams.addAll(theEntity.getParamsToken());
}
numberParams = new ArrayList<>();
if (theEntity.isParamsNumberPopulated()) {
numberParams.addAll(theEntity.getParamsNumber());
}
quantityParams = new ArrayList<>();
if (theEntity.isParamsQuantityPopulated()) {
quantityParams.addAll(theEntity.getParamsQuantity());
}
dateParams = new ArrayList<>();
if (theEntity.isParamsDatePopulated()) {
dateParams.addAll(theEntity.getParamsDate());
}
uriParams = new ArrayList<>();
if (theEntity.isParamsUriPopulated()) {
uriParams.addAll(theEntity.getParamsUri());
}
coordsParams = new ArrayList<>();
if (theEntity.isParamsCoordsPopulated()) {
coordsParams.addAll(theEntity.getParamsCoords());
}
links = new ArrayList<>();
if (theEntity.isHasLinks()) {
links.addAll(theEntity.getResourceLinks());
}
compositeStringUniques = new ArrayList<>();
if (theEntity.isParamsCompositeStringUniquePresent()) {
compositeStringUniques.addAll(theEntity.getParamsCompositeStringUnique());
}
}
public ResourceIndexedSearchParams(IndexingSupport indexingService) {
this.myIndexingService = indexingService;
stringParams = Collections.emptySet();
tokenParams = Collections.emptySet();
numberParams = Collections.emptySet();
quantityParams = Collections.emptySet();
dateParams = Collections.emptySet();
uriParams = Collections.emptySet();
coordsParams = Collections.emptySet();
links = Collections.emptySet();
compositeStringUniques = Collections.emptySet();
}
public ResourceIndexedSearchParams(IndexingSupport indexingService, Date theUpdateTime, ResourceTable theEntity, IBaseResource theResource, ResourceIndexedSearchParams existingParams) {
this.myIndexingService = indexingService;
stringParams = extractSearchParamStrings(theEntity, theResource);
numberParams = extractSearchParamNumber(theEntity, theResource);
quantityParams = extractSearchParamQuantity(theEntity, theResource);
dateParams = extractSearchParamDates(theEntity, theResource);
uriParams = extractSearchParamUri(theEntity, theResource);
coordsParams = extractSearchParamCoords(theEntity, theResource);
ourLog.trace("Storing date indexes: {}", dateParams);
tokenParams = new HashSet<>();
for (BaseResourceIndexedSearchParam next : extractSearchParamTokens(theEntity, theResource)) {
if (next instanceof ResourceIndexedSearchParamToken) {
tokenParams.add((ResourceIndexedSearchParamToken) next);
} else {
stringParams.add((ResourceIndexedSearchParamString) next);
}
}
Set<Entry<String, RuntimeSearchParam>> activeSearchParams = myIndexingService.getSearchParamRegistry().getActiveSearchParams(theEntity.getResourceType()).entrySet();
DaoConfig myConfig = indexingService.getConfig();
if (myConfig .getIndexMissingFields() == DaoConfig.IndexEnabledEnum.ENABLED) {
findMissingSearchParams(theEntity, activeSearchParams, RestSearchParameterTypeEnum.STRING, stringParams);
findMissingSearchParams(theEntity, activeSearchParams, RestSearchParameterTypeEnum.NUMBER, numberParams);
findMissingSearchParams(theEntity, activeSearchParams, RestSearchParameterTypeEnum.QUANTITY, quantityParams);
findMissingSearchParams(theEntity, activeSearchParams, RestSearchParameterTypeEnum.DATE, dateParams);
findMissingSearchParams(theEntity, activeSearchParams, RestSearchParameterTypeEnum.URI, uriParams);
findMissingSearchParams(theEntity, activeSearchParams, RestSearchParameterTypeEnum.TOKEN, tokenParams);
}
setUpdatedTime(stringParams, theUpdateTime);
setUpdatedTime(numberParams, theUpdateTime);
setUpdatedTime(quantityParams, theUpdateTime);
setUpdatedTime(dateParams, theUpdateTime);
setUpdatedTime(uriParams, theUpdateTime);
setUpdatedTime(coordsParams, theUpdateTime);
setUpdatedTime(tokenParams, theUpdateTime);
/*
* Handle references within the resource that are match URLs, for example references like "Patient?identifier=foo". These match URLs are resolved and replaced with the ID of the
* matching resource.
*/
if (myConfig.isAllowInlineMatchUrlReferences()) {
FhirTerser terser = myIndexingService.getContext().newTerser();
List<IBaseReference> allRefs = terser.getAllPopulatedChildElementsOfType(theResource, IBaseReference.class);
for (IBaseReference nextRef : allRefs) {
IIdType nextId = nextRef.getReferenceElement();
String nextIdText = nextId.getValue();
if (nextIdText == null) {
continue;
}
int qmIndex = nextIdText.indexOf('?');
if (qmIndex != -1) {
for (int i = qmIndex - 1; i >= 0; i--) {
if (nextIdText.charAt(i) == '/') {
if (i < nextIdText.length() - 1 && nextIdText.charAt(i + 1) == '?') {
// Just in case the URL is in the form Patient/?foo=bar
continue;
}
nextIdText = nextIdText.substring(i + 1);
break;
}
}
String resourceTypeString = nextIdText.substring(0, nextIdText.indexOf('?')).replace("/", "");
RuntimeResourceDefinition matchResourceDef = myIndexingService.getContext().getResourceDefinition(resourceTypeString);
if (matchResourceDef == null) {
String msg = myIndexingService.getContext().getLocalizer().getMessage(BaseHapiFhirDao.class, "invalidMatchUrlInvalidResourceType", nextId.getValue(), resourceTypeString);
throw new InvalidRequestException(msg);
}
Class<? extends IBaseResource> matchResourceType = matchResourceDef.getImplementingClass();
Set<Long> matches = myIndexingService.processMatchUrl(nextIdText, matchResourceType);
if (matches.isEmpty()) {
String msg = indexingService.getContext().getLocalizer().getMessage(BaseHapiFhirDao.class, "invalidMatchUrlNoMatches", nextId.getValue());
throw new ResourceNotFoundException(msg);
}
if (matches.size() > 1) {
String msg = indexingService.getContext().getLocalizer().getMessage(BaseHapiFhirDao.class, "invalidMatchUrlMultipleMatches", nextId.getValue());
throw new PreconditionFailedException(msg);
}
Long next = matches.iterator().next();
String newId = translatePidIdToForcedId(resourceTypeString, next);
ourLog.debug("Replacing inline match URL[{}] with ID[{}}", nextId.getValue(), newId);
nextRef.setReference(newId);
}
}
}
links = new HashSet<>();
populatedResourceLinkParameters = extractResourceLinks(theEntity, theResource, links, theUpdateTime);
/*
* If the existing resource already has links and those match links we still want, use them instead of removing them and re adding them
*/
for (Iterator<ResourceLink> existingLinkIter = existingParams.getResourceLinks().iterator(); existingLinkIter.hasNext(); ) {
ResourceLink nextExisting = existingLinkIter.next();
if (links.remove(nextExisting)) {
existingLinkIter.remove();
links.add(nextExisting);
}
}
/*
* Handle composites
*/
compositeStringUniques = extractCompositeStringUniques(theEntity, stringParams, tokenParams, numberParams, quantityParams, dateParams, uriParams, links);
}
public Collection<ResourceLink> getResourceLinks() {
return links;
}
protected Set<ResourceIndexedSearchParamCoords> extractSearchParamCoords(ResourceTable theEntity, IBaseResource theResource) {
return myIndexingService.getSearchParamExtractor().extractSearchParamCoords(theEntity, theResource);
}
protected Set<ResourceIndexedSearchParamDate> extractSearchParamDates(ResourceTable theEntity, IBaseResource theResource) {
return myIndexingService.getSearchParamExtractor().extractSearchParamDates(theEntity, theResource);
}
protected Set<ResourceIndexedSearchParamNumber> extractSearchParamNumber(ResourceTable theEntity, IBaseResource theResource) {
return myIndexingService.getSearchParamExtractor().extractSearchParamNumber(theEntity, theResource);
}
protected Set<ResourceIndexedSearchParamQuantity> extractSearchParamQuantity(ResourceTable theEntity, IBaseResource theResource) {
return myIndexingService.getSearchParamExtractor().extractSearchParamQuantity(theEntity, theResource);
}
protected Set<ResourceIndexedSearchParamString> extractSearchParamStrings(ResourceTable theEntity, IBaseResource theResource) {
return myIndexingService.getSearchParamExtractor().extractSearchParamStrings(theEntity, theResource);
}
protected Set<BaseResourceIndexedSearchParam> extractSearchParamTokens(ResourceTable theEntity, IBaseResource theResource) {
return myIndexingService.getSearchParamExtractor().extractSearchParamTokens(theEntity, theResource);
}
protected Set<ResourceIndexedSearchParamUri> extractSearchParamUri(ResourceTable theEntity, IBaseResource theResource) {
return myIndexingService.getSearchParamExtractor().extractSearchParamUri(theEntity, theResource);
}
@SuppressWarnings("unchecked")
private <RT extends BaseResourceIndexedSearchParam> void findMissingSearchParams(ResourceTable theEntity, Set<Entry<String, RuntimeSearchParam>> activeSearchParams, RestSearchParameterTypeEnum type,
Collection<RT> paramCollection) {
for (Entry<String, RuntimeSearchParam> nextEntry : activeSearchParams) {
String nextParamName = nextEntry.getKey();
if (nextEntry.getValue().getParamType() == type) {
boolean haveParam = false;
for (BaseResourceIndexedSearchParam nextParam : paramCollection) {
if (nextParam.getParamName().equals(nextParamName)) {
haveParam = true;
break;
}
}
if (!haveParam) {
BaseResourceIndexedSearchParam param;
switch (type) {
case DATE:
param = new ResourceIndexedSearchParamDate();
break;
case NUMBER:
param = new ResourceIndexedSearchParamNumber();
break;
case QUANTITY:
param = new ResourceIndexedSearchParamQuantity();
break;
case STRING:
param = new ResourceIndexedSearchParamString()
.setDaoConfig(myIndexingService.getConfig());
break;
case TOKEN:
param = new ResourceIndexedSearchParamToken();
break;
case URI:
param = new ResourceIndexedSearchParamUri();
break;
case COMPOSITE:
case HAS:
case REFERENCE:
default:
continue;
}
param.setResource(theEntity);
param.setMissing(true);
param.setParamName(nextParamName);
paramCollection.add((RT) param);
}
}
}
}
public void setParams(ResourceTable theEntity) {
theEntity.setParamsString(stringParams);
theEntity.setParamsStringPopulated(stringParams.isEmpty() == false);
theEntity.setParamsToken(tokenParams);
theEntity.setParamsTokenPopulated(tokenParams.isEmpty() == false);
theEntity.setParamsNumber(numberParams);
theEntity.setParamsNumberPopulated(numberParams.isEmpty() == false);
theEntity.setParamsQuantity(quantityParams);
theEntity.setParamsQuantityPopulated(quantityParams.isEmpty() == false);
theEntity.setParamsDate(dateParams);
theEntity.setParamsDatePopulated(dateParams.isEmpty() == false);
theEntity.setParamsUri(uriParams);
theEntity.setParamsUriPopulated(uriParams.isEmpty() == false);
theEntity.setParamsCoords(coordsParams);
theEntity.setParamsCoordsPopulated(coordsParams.isEmpty() == false);
theEntity.setParamsCompositeStringUniquePresent(compositeStringUniques.isEmpty() == false);
theEntity.setResourceLinks(links);
theEntity.setHasLinks(links.isEmpty() == false);
}
private Set<ResourceIndexedCompositeStringUnique> extractCompositeStringUniques(ResourceTable theEntity, Collection<ResourceIndexedSearchParamString> theStringParams, Collection<ResourceIndexedSearchParamToken> theTokenParams, Collection<ResourceIndexedSearchParamNumber> theNumberParams, Collection<ResourceIndexedSearchParamQuantity> theQuantityParams, Collection<ResourceIndexedSearchParamDate> theDateParams, Collection<ResourceIndexedSearchParamUri> theUriParams, Collection<ResourceLink> theLinks) {
Set<ResourceIndexedCompositeStringUnique> compositeStringUniques;
compositeStringUniques = new HashSet<>();
List<JpaRuntimeSearchParam> uniqueSearchParams = myIndexingService.getSearchParamRegistry().getActiveUniqueSearchParams(theEntity.getResourceType());
for (JpaRuntimeSearchParam next : uniqueSearchParams) {
List<List<String>> partsChoices = new ArrayList<>();
for (RuntimeSearchParam nextCompositeOf : next.getCompositeOf()) {
Collection<? extends BaseResourceIndexedSearchParam> paramsListForCompositePart = null;
Collection<ResourceLink> linksForCompositePart = null;
Collection<String> linksForCompositePartWantPaths = null;
switch (nextCompositeOf.getParamType()) {
case NUMBER:
paramsListForCompositePart = theNumberParams;
break;
case DATE:
paramsListForCompositePart = theDateParams;
break;
case STRING:
paramsListForCompositePart = theStringParams;
break;
case TOKEN:
paramsListForCompositePart = theTokenParams;
break;
case REFERENCE:
linksForCompositePart = theLinks;
linksForCompositePartWantPaths = new HashSet<>();
linksForCompositePartWantPaths.addAll(nextCompositeOf.getPathsSplit());
break;
case QUANTITY:
paramsListForCompositePart = theQuantityParams;
break;
case URI:
paramsListForCompositePart = theUriParams;
break;
case COMPOSITE:
case HAS:
break;
}
ArrayList<String> nextChoicesList = new ArrayList<>();
partsChoices.add(nextChoicesList);
String key = UrlUtil.escapeUrlParam(nextCompositeOf.getName());
if (paramsListForCompositePart != null) {
for (BaseResourceIndexedSearchParam nextParam : paramsListForCompositePart) {
if (nextParam.getParamName().equals(nextCompositeOf.getName())) {
IQueryParameterType nextParamAsClientParam = nextParam.toQueryParameterType();
String value = nextParamAsClientParam.getValueAsQueryToken(myIndexingService.getContext());
if (isNotBlank(value)) {
value = UrlUtil.escapeUrlParam(value);
nextChoicesList.add(key + "=" + value);
}
}
}
}
if (linksForCompositePart != null) {
for (ResourceLink nextLink : linksForCompositePart) {
if (linksForCompositePartWantPaths.contains(nextLink.getSourcePath())) {
String value = nextLink.getTargetResource().getIdDt().toUnqualifiedVersionless().getValue();
if (isNotBlank(value)) {
value = UrlUtil.escapeUrlParam(value);
nextChoicesList.add(key + "=" + value);
}
}
}
}
}
Set<String> queryStringsToPopulate = extractCompositeStringUniquesValueChains(theEntity.getResourceType(), partsChoices);
for (String nextQueryString : queryStringsToPopulate) {
if (isNotBlank(nextQueryString)) {
compositeStringUniques.add(new ResourceIndexedCompositeStringUnique(theEntity, nextQueryString));
}
}
}
return compositeStringUniques;
}
/**
* This method is used to create a set of all possible combinations of
* parameters across a set of search parameters. An example of why
* this is needed:
* <p>
* Let's say we have a unique index on (Patient:gender AND Patient:name).
* Then we pass in <code>SMITH, John</code> with a gender of <code>male</code>.
* </p>
* <p>
* In this case, because the name parameter matches both first and last name,
* we now need two unique indexes:
* <ul>
* <li>Patient?gender=male&amp;name=SMITH</li>
* <li>Patient?gender=male&amp;name=JOHN</li>
* </ul>
* </p>
* <p>
* So this recursive algorithm calculates those
* </p>
*
* @param theResourceType E.g. <code>Patient
* @param thePartsChoices E.g. <code>[[gender=male], [name=SMITH, name=JOHN]]</code>
*/
public static Set<String> extractCompositeStringUniquesValueChains(String
theResourceType, List<List<String>> thePartsChoices) {
for (List<String> next : thePartsChoices) {
next.removeIf(StringUtils::isBlank);
if (next.isEmpty()) {
return Collections.emptySet();
}
}
if (thePartsChoices.isEmpty()) {
return Collections.emptySet();
}
thePartsChoices.sort((o1, o2) -> {
String str1 = null;
String str2 = null;
if (o1.size() > 0) {
str1 = o1.get(0);
}
if (o2.size() > 0) {
str2 = o2.get(0);
}
return compare(str1, str2);
});
List<String> values = new ArrayList<>();
Set<String> queryStringsToPopulate = new HashSet<>();
extractCompositeStringUniquesValueChains(theResourceType, thePartsChoices, values, queryStringsToPopulate);
return queryStringsToPopulate;
}
private static void extractCompositeStringUniquesValueChains(String
theResourceType, List<List<String>> thePartsChoices, List<String> theValues, Set<String> theQueryStringsToPopulate) {
if (thePartsChoices.size() > 0) {
List<String> nextList = thePartsChoices.get(0);
Collections.sort(nextList);
for (String nextChoice : nextList) {
theValues.add(nextChoice);
extractCompositeStringUniquesValueChains(theResourceType, thePartsChoices.subList(1, thePartsChoices.size()), theValues, theQueryStringsToPopulate);
theValues.remove(theValues.size() - 1);
}
} else {
if (theValues.size() > 0) {
StringBuilder uniqueString = new StringBuilder();
uniqueString.append(theResourceType);
for (int i = 0; i < theValues.size(); i++) {
uniqueString.append(i == 0 ? "?" : "&");
uniqueString.append(theValues.get(i));
}
theQueryStringsToPopulate.add(uniqueString.toString());
}
}
}
/**
* @return Returns a set containing all of the parameter names that
* were found to have a value
*/
@SuppressWarnings("unchecked")
protected Set<String> extractResourceLinks(ResourceTable theEntity, IBaseResource theResource, Collection<ResourceLink> theLinks, Date theUpdateTime) {
HashSet<String> retVal = new HashSet<>();
String resourceType = theEntity.getResourceType();
/*
* For now we don't try to load any of the links in a bundle if it's the actual bundle we're storing..
*/
if (theResource instanceof IBaseBundle) {
return Collections.emptySet();
}
Map<String, RuntimeSearchParam> searchParams = myIndexingService.getSearchParamRegistry().getActiveSearchParams(myIndexingService.toResourceName(theResource.getClass()));
for (RuntimeSearchParam nextSpDef : searchParams.values()) {
if (nextSpDef.getParamType() != RestSearchParameterTypeEnum.REFERENCE) {
continue;
}
String nextPathsUnsplit = nextSpDef.getPath();
if (isBlank(nextPathsUnsplit)) {
continue;
}
boolean multiType = false;
if (nextPathsUnsplit.endsWith("[x]")) {
multiType = true;
}
List<PathAndRef> refs = myIndexingService.getSearchParamExtractor().extractResourceLinks(theResource, nextSpDef);
for (PathAndRef nextPathAndRef : refs) {
Object nextObject = nextPathAndRef.getRef();
/*
* A search parameter on an extension field that contains
* references should index those references
*/
if (nextObject instanceof IBaseExtension<?, ?>) {
nextObject = ((IBaseExtension<?, ?>) nextObject).getValue();
}
if (nextObject instanceof CanonicalType) {
nextObject = new Reference(((CanonicalType) nextObject).getValueAsString());
}
IIdType nextId;
if (nextObject instanceof IBaseReference) {
IBaseReference nextValue = (IBaseReference) nextObject;
if (nextValue.isEmpty()) {
continue;
}
nextId = nextValue.getReferenceElement();
/*
* This can only really happen if the DAO is being called
* programatically with a Bundle (not through the FHIR REST API)
* but Smile does this
*/
if (nextId.isEmpty() && nextValue.getResource() != null) {
nextId = nextValue.getResource().getIdElement();
}
if (nextId.isEmpty() || nextId.getValue().startsWith("#")) {
// This is a blank or contained resource reference
continue;
}
} else if (nextObject instanceof IBaseResource) {
nextId = ((IBaseResource) nextObject).getIdElement();
if (nextId == null || nextId.hasIdPart() == false) {
continue;
}
} else if (myIndexingService.getContext().getElementDefinition((Class<? extends IBase>) nextObject.getClass()).getName().equals("uri")) {
continue;
} else if (resourceType.equals("Consent") && nextPathAndRef.getPath().equals("Consent.source")) {
// Consent#source-identifier has a path that isn't typed - This is a one-off to deal with that
continue;
} else {
if (!multiType) {
if (nextSpDef.getName().equals("sourceuri")) {
continue; // TODO: disable this eventually - ConceptMap:sourceuri is of type reference but points to a URI
}
throw new ConfigurationException("Search param " + nextSpDef.getName() + " is of unexpected datatype: " + nextObject.getClass());
} else {
continue;
}
}
retVal.add(nextSpDef.getName());
if (myIndexingService.isLogicalReference(nextId)) {
ResourceLink resourceLink = new ResourceLink(nextPathAndRef.getPath(), theEntity, nextId, theUpdateTime);
if (theLinks.add(resourceLink)) {
ourLog.debug("Indexing remote resource reference URL: {}", nextId);
}
continue;
}
String baseUrl = nextId.getBaseUrl();
String typeString = nextId.getResourceType();
if (isBlank(typeString)) {
throw new InvalidRequestException("Invalid resource reference found at path[" + nextPathsUnsplit + "] - Does not contain resource type - " + nextId.getValue());
}
RuntimeResourceDefinition resourceDefinition;
try {
resourceDefinition = myIndexingService.getContext().getResourceDefinition(typeString);
} catch (DataFormatException e) {
throw new InvalidRequestException(
"Invalid resource reference found at path[" + nextPathsUnsplit + "] - Resource type is unknown or not supported on this server - " + nextId.getValue());
}
if (isNotBlank(baseUrl)) {
if (!myIndexingService.getConfig().getTreatBaseUrlsAsLocal().contains(baseUrl) && !myIndexingService.getConfig().isAllowExternalReferences()) {
String msg = myIndexingService.getContext().getLocalizer().getMessage(BaseHapiFhirDao.class, "externalReferenceNotAllowed", nextId.getValue());
throw new InvalidRequestException(msg);
} else {
ResourceLink resourceLink = new ResourceLink(nextPathAndRef.getPath(), theEntity, nextId, theUpdateTime);
if (theLinks.add(resourceLink)) {
ourLog.debug("Indexing remote resource reference URL: {}", nextId);
}
continue;
}
}
Class<? extends IBaseResource> type = resourceDefinition.getImplementingClass();
String id = nextId.getIdPart();
if (StringUtils.isBlank(id)) {
throw new InvalidRequestException("Invalid resource reference found at path[" + nextPathsUnsplit + "] - Does not contain resource ID - " + nextId.getValue());
}
IFhirResourceDao<?> dao = myIndexingService.getDao(type);
if (dao == null) {
StringBuilder b = new StringBuilder();
b.append("This server (version ");
b.append(myIndexingService.getContext().getVersion().getVersion());
b.append(") is not able to handle resources of type[");
b.append(nextId.getResourceType());
b.append("] - Valid resource types for this server: ");
b.append(myIndexingService.getResourceTypeToDao().keySet().toString());
throw new InvalidRequestException(b.toString());
}
Long valueOf;
try {
valueOf = myIndexingService.translateForcedIdToPid(typeString, id);
} catch (ResourceNotFoundException e) {
if (myIndexingService.getConfig().isEnforceReferentialIntegrityOnWrite() == false) {
continue;
}
RuntimeResourceDefinition missingResourceDef = myIndexingService.getContext().getResourceDefinition(type);
String resName = missingResourceDef.getName();
if (myIndexingService.getConfig().isAutoCreatePlaceholderReferenceTargets()) {
IBaseResource newResource = missingResourceDef.newInstance();
newResource.setId(resName + "/" + id);
IFhirResourceDao<IBaseResource> placeholderResourceDao = (IFhirResourceDao<IBaseResource>) myIndexingService.getDao(newResource.getClass());
ourLog.debug("Automatically creating empty placeholder resource: {}", newResource.getIdElement().getValue());
valueOf = placeholderResourceDao.update(newResource).getEntity().getId();
} else {
throw new InvalidRequestException("Resource " + resName + "/" + id + " not found, specified in path: " + nextPathsUnsplit);
}
}
ResourceTable target = myIndexingService.getEntityManager().find(ResourceTable.class, valueOf);
RuntimeResourceDefinition targetResourceDef = myIndexingService.getContext().getResourceDefinition(type);
if (target == null) {
String resName = targetResourceDef.getName();
throw new InvalidRequestException("Resource " + resName + "/" + id + " not found, specified in path: " + nextPathsUnsplit);
}
if (!typeString.equals(target.getResourceType())) {
throw new UnprocessableEntityException(
"Resource contains reference to " + nextId.getValue() + " but resource with ID " + nextId.getIdPart() + " is actually of type " + target.getResourceType());
}
if (target.getDeleted() != null) {
String resName = targetResourceDef.getName();
throw new InvalidRequestException("Resource " + resName + "/" + id + " is deleted, specified in path: " + nextPathsUnsplit);
}
if (nextSpDef.getTargets() != null && !nextSpDef.getTargets().contains(typeString)) {
continue;
}
ResourceLink resourceLink = new ResourceLink(nextPathAndRef.getPath(), theEntity, target, theUpdateTime);
theLinks.add(resourceLink);
}
}
theEntity.setHasLinks(theLinks.size() > 0);
return retVal;
}
private void setUpdatedTime(Collection<? extends BaseResourceIndexedSearchParam> theParams, Date theUpdateTime) {
for (BaseResourceIndexedSearchParam nextSearchParam : theParams) {
nextSearchParam.setUpdated(theUpdateTime);
}
}
private String translatePidIdToForcedId(String theResourceType, Long theId) {
ForcedId forcedId = myIndexingService.getForcedIdDao().findByResourcePid(theId);
if (forcedId != null) {
return forcedId.getResourceType() + '/' + forcedId.getForcedId();
} else {
return theResourceType + '/' + theId.toString();
}
}
public void removeCommon(ResourceTable theEntity, ResourceIndexedSearchParams existingParams) {
EntityManager myEntityManager = myIndexingService.getEntityManager();
calculateHashes(stringParams);
for (ResourceIndexedSearchParamString next : removeCommon(existingParams.stringParams, stringParams)) {
next.setDaoConfig(myIndexingService.getConfig());
myEntityManager .remove(next);
theEntity.getParamsString().remove(next);
}
for (ResourceIndexedSearchParamString next : removeCommon(stringParams, existingParams.stringParams)) {
myEntityManager.persist(next);
}
calculateHashes(tokenParams);
for (ResourceIndexedSearchParamToken next : removeCommon(existingParams.tokenParams, tokenParams)) {
myEntityManager.remove(next);
theEntity.getParamsToken().remove(next);
}
for (ResourceIndexedSearchParamToken next : removeCommon(tokenParams, existingParams.tokenParams)) {
myEntityManager.persist(next);
}
calculateHashes(numberParams);
for (ResourceIndexedSearchParamNumber next : removeCommon(existingParams.numberParams, numberParams)) {
myEntityManager.remove(next);
theEntity.getParamsNumber().remove(next);
}
for (ResourceIndexedSearchParamNumber next : removeCommon(numberParams, existingParams.numberParams)) {
myEntityManager.persist(next);
}
calculateHashes(quantityParams);
for (ResourceIndexedSearchParamQuantity next : removeCommon(existingParams.quantityParams, quantityParams)) {
myEntityManager.remove(next);
theEntity.getParamsQuantity().remove(next);
}
for (ResourceIndexedSearchParamQuantity next : removeCommon(quantityParams, existingParams.quantityParams)) {
myEntityManager.persist(next);
}
// Store date SP's
calculateHashes(dateParams);
for (ResourceIndexedSearchParamDate next : removeCommon(existingParams.dateParams, dateParams)) {
myEntityManager.remove(next);
theEntity.getParamsDate().remove(next);
}
for (ResourceIndexedSearchParamDate next : removeCommon(dateParams, existingParams.dateParams)) {
myEntityManager.persist(next);
}
// Store URI SP's
calculateHashes(uriParams);
for (ResourceIndexedSearchParamUri next : removeCommon(existingParams.uriParams, uriParams)) {
myEntityManager.remove(next);
theEntity.getParamsUri().remove(next);
}
for (ResourceIndexedSearchParamUri next : removeCommon(uriParams, existingParams.uriParams)) {
myEntityManager.persist(next);
}
// Store Coords SP's
calculateHashes(coordsParams);
for (ResourceIndexedSearchParamCoords next : removeCommon(existingParams.coordsParams, coordsParams)) {
myEntityManager.remove(next);
theEntity.getParamsCoords().remove(next);
}
for (ResourceIndexedSearchParamCoords next : removeCommon(coordsParams, existingParams.coordsParams)) {
myEntityManager.persist(next);
}
// Store resource links
for (ResourceLink next : removeCommon(existingParams.links, links)) {
myEntityManager.remove(next);
theEntity.getResourceLinks().remove(next);
}
for (ResourceLink next : removeCommon(links, existingParams.links)) {
myEntityManager.persist(next);
}
// make sure links are indexed
theEntity.setResourceLinks(links);
// Store composite string uniques
if (myIndexingService.getConfig().isUniqueIndexesEnabled()) {
for (ResourceIndexedCompositeStringUnique next : removeCommon(existingParams.compositeStringUniques, compositeStringUniques)) {
ourLog.debug("Removing unique index: {}", next);
myEntityManager.remove(next);
theEntity.getParamsCompositeStringUnique().remove(next);
}
for (ResourceIndexedCompositeStringUnique next : removeCommon(compositeStringUniques, existingParams.compositeStringUniques)) {
if (myIndexingService.getConfig().isUniqueIndexesCheckedBeforeSave()) {
ResourceIndexedCompositeStringUnique existing = myIndexingService.getResourceIndexedCompositeStringUniqueDao().findByQueryString(next.getIndexString());
if (existing != null) {
String msg = myIndexingService.getContext().getLocalizer().getMessage(BaseHapiFhirDao.class, "uniqueIndexConflictFailure", theEntity.getResourceType(), next.getIndexString(), existing.getResource().getIdDt().toUnqualifiedVersionless().getValue());
throw new PreconditionFailedException(msg);
}
}
ourLog.debug("Persisting unique index: {}", next);
myEntityManager.persist(next);
}
}
}
private void calculateHashes(Collection<? extends BaseResourceIndexedSearchParam> theStringParams) {
for (BaseResourceIndexedSearchParam next : theStringParams) {
next.calculateHashes();
}
}
private <T> Collection<T> removeCommon(Collection<T> theInput, Collection<T> theToRemove) {
assert theInput != theToRemove;
if (theInput.isEmpty()) {
return theInput;
}
ArrayList<T> retVal = new ArrayList<>(theInput);
retVal.removeAll(theToRemove);
return retVal;
}
public Set<String> getPopulatedResourceLinkParameters() {
return populatedResourceLinkParameters;
}
}

6
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/subscription/BaseSubscriptionInterceptor.java
View File

@ -27,6 +27,8 @@ import ca.uhn.fhir.jpa.config.BaseConfig;
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.dao.SearchParameterMap;
import ca.uhn.fhir.jpa.provider.ServletSubRequestDetails;
import ca.uhn.fhir.jpa.subscription.matcher.ISubscriptionMatcher;
import ca.uhn.fhir.jpa.subscription.matcher.SubscriptionMatcherDatabase;
import ca.uhn.fhir.jpa.util.JpaConstants;
import ca.uhn.fhir.rest.api.RestOperationTypeEnum;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
@ -284,6 +286,7 @@ public abstract class BaseSubscriptionInterceptor<S extends IBaseResource> exten
public abstract Subscription.SubscriptionChannelType getChannelType();
// TODO KHS move out
@SuppressWarnings("unchecked")
public <R extends IBaseResource> IFhirResourceDao<R> getDao(Class<R> theType) {
if (myResourceTypeToDao == null) {
@ -433,7 +436,8 @@ public abstract class BaseSubscriptionInterceptor<S extends IBaseResource> exten
protected void registerSubscriptionCheckingSubscriber() {
if (mySubscriptionCheckingSubscriber == null) {
mySubscriptionCheckingSubscriber = new SubscriptionCheckingSubscriber(getSubscriptionDao(), getChannelType(), this);
ISubscriptionMatcher subscriptionMatcher = new SubscriptionMatcherDatabase(getSubscriptionDao(), this);
mySubscriptionCheckingSubscriber = new SubscriptionCheckingSubscriber(getSubscriptionDao(), getChannelType(), this, subscriptionMatcher );
}
getProcessingChannel().subscribe(mySubscriptionCheckingSubscriber);
}

40
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/subscription/SubscriptionCheckingSubscriber.java
View File

@ -1,5 +1,17 @@
package ca.uhn.fhir.jpa.subscription;
import java.util.List;
import org.apache.commons.lang3.StringUtils;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.model.Subscription;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.messaging.Message;
import org.springframework.messaging.MessageChannel;
import org.springframework.messaging.MessagingException;
/*-
* #%L
* HAPI FHIR JPA Server
@ -25,27 +37,20 @@ import ca.uhn.fhir.jpa.dao.BaseHapiFhirDao;
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.dao.SearchParameterMap;
import ca.uhn.fhir.jpa.provider.ServletSubRequestDetails;
import ca.uhn.fhir.jpa.subscription.matcher.ISubscriptionMatcher;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.api.server.RequestDetails;
import org.apache.commons.lang3.StringUtils;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.model.Subscription;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.messaging.Message;
import org.springframework.messaging.MessageChannel;
import org.springframework.messaging.MessagingException;
import java.util.List;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
public class SubscriptionCheckingSubscriber extends BaseSubscriptionSubscriber {
private Logger ourLog = LoggerFactory.getLogger(SubscriptionCheckingSubscriber.class);
public SubscriptionCheckingSubscriber(IFhirResourceDao theSubscriptionDao, Subscription.SubscriptionChannelType theChannelType, BaseSubscriptionInterceptor theSubscriptionInterceptor) {
private final ISubscriptionMatcher mySubscriptionMatcher;
public SubscriptionCheckingSubscriber(IFhirResourceDao theSubscriptionDao, Subscription.SubscriptionChannelType theChannelType, BaseSubscriptionInterceptor theSubscriptionInterceptor, ISubscriptionMatcher theSubscriptionMatcher) {
super(theSubscriptionDao, theChannelType, theSubscriptionInterceptor);
this.mySubscriptionMatcher = theSubscriptionMatcher;
}
@Override
@ -107,16 +112,7 @@ public class SubscriptionCheckingSubscriber extends BaseSubscriptionSubscriber {
continue;
}
// run the subscriptions query and look for matches, add the id as part of the criteria to avoid getting matches of previous resources rather than the recent resource
String criteria = nextCriteriaString;
criteria += "&_id=" + resourceType + "/" + resourceId;
criteria = massageCriteria(criteria);
IBundleProvider results = performSearch(criteria);
ourLog.debug("Subscription check found {} results for query: {}", results.size(), criteria);
if (results.size() == 0) {
if (!mySubscriptionMatcher.match(nextCriteriaString, msg)) {
continue;
}

7
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/subscription/matcher/ISubscriptionMatcher.java Normal file
View File

@ -0,0 +1,7 @@
package ca.uhn.fhir.jpa.subscription.matcher;
import ca.uhn.fhir.jpa.subscription.ResourceModifiedMessage;
public interface ISubscriptionMatcher {
boolean match(String criteria, ResourceModifiedMessage msg);
}

67
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/subscription/matcher/SubscriptionMatcherDatabase.java Normal file
View File

@ -0,0 +1,67 @@
package ca.uhn.fhir.jpa.subscription.matcher;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.jpa.dao.BaseHapiFhirDao;
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.dao.SearchParameterMap;
import ca.uhn.fhir.jpa.provider.ServletSubRequestDetails;
import ca.uhn.fhir.jpa.subscription.BaseSubscriptionInterceptor;
import ca.uhn.fhir.jpa.subscription.ResourceModifiedMessage;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.api.server.RequestDetails;
public class SubscriptionMatcherDatabase implements ISubscriptionMatcher {
private Logger ourLog = LoggerFactory.getLogger(SubscriptionMatcherDatabase.class);
private final IFhirResourceDao<?> mySubscriptionDao;
private final BaseSubscriptionInterceptor mySubscriptionInterceptor;
public SubscriptionMatcherDatabase(IFhirResourceDao<?> theSubscriptionDao, BaseSubscriptionInterceptor theSubscriptionInterceptor) {
mySubscriptionDao = theSubscriptionDao;
mySubscriptionInterceptor = theSubscriptionInterceptor;
}
@Override
public boolean match(String criteria, ResourceModifiedMessage msg) {
IIdType id = msg.getId(getContext());
String resourceType = id.getResourceType();
String resourceId = id.getIdPart();
// run the subscriptions query and look for matches, add the id as part of the criteria to avoid getting matches of previous resources rather than the recent resource
criteria += "&_id=" + resourceType + "/" + resourceId;
IBundleProvider results = performSearch(criteria);
ourLog.debug("Subscription check found {} results for query: {}", results.size(), criteria);
return results.size() > 0;
}
/**
* Search based on a query criteria
*/
protected IBundleProvider performSearch(String theCriteria) {
RuntimeResourceDefinition responseResourceDef = mySubscriptionDao.validateCriteriaAndReturnResourceDefinition(theCriteria);
SearchParameterMap responseCriteriaUrl = BaseHapiFhirDao.translateMatchUrl(mySubscriptionDao, getContext(), theCriteria, responseResourceDef);
RequestDetails req = new ServletSubRequestDetails();
req.setSubRequest(true);
IFhirResourceDao<? extends IBaseResource> responseDao = mySubscriptionInterceptor.getDao(responseResourceDef.getImplementingClass());
responseCriteriaUrl.setLoadSynchronousUpTo(1);
IBundleProvider responseResults = responseDao.search(responseCriteriaUrl, req);
return responseResults;
}
public FhirContext getContext() {
return mySubscriptionDao.getContext();
}
}

12
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/subscription/matcher/SubscriptionMatcherInMemory.java Normal file
View File

@ -0,0 +1,12 @@
package ca.uhn.fhir.jpa.subscription.matcher;
import ca.uhn.fhir.jpa.subscription.ResourceModifiedMessage;
public class SubscriptionMatcherInMemory implements ISubscriptionMatcher {
@Override
public boolean match(String criteria, ResourceModifiedMessage msg) {
// FIXME KHS implement
return true;
}
}

5
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/subscription/SubscriptionTriggeringDstu3Test.java
View File

@ -26,6 +26,7 @@ import org.junit.*;
import javax.servlet.http.HttpServletRequest;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import static org.hamcrest.CoreMatchers.containsString;
@ -44,8 +45,8 @@ public class SubscriptionTriggeringDstu3Test extends BaseResourceProviderDstu3Te
private static RestfulServer ourListenerRestServer;
private static Server ourListenerServer;
private static String ourListenerServerBase;
private static List<Observation> ourCreatedObservations = Lists.newArrayList();
private static List<Observation> ourUpdatedObservations = Lists.newArrayList();
private static List<Observation> ourCreatedObservations = Collections.synchronizedList(Lists.newArrayList());
private static List<Observation> ourUpdatedObservations = Collections.synchronizedList(Lists.newArrayList());
private static List<Patient> ourCreatedPatients = Lists.newArrayList();
private static List<Patient> ourUpdatedPatients = Lists.newArrayList();
private static List<String> ourContentTypes = new ArrayList<>();

627
hapi-fhir-structures-dstu2/src/test/java/ca/uhn/fhir/util/FhirTerserDstu2Test.java
View File

@ -1,24 +1,5 @@
package ca.uhn.fhir.util;
import static org.hamcrest.Matchers.containsInAnyOrder;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertSame;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import static org.mockito.Mockito.mock;
import static org.mockito.Mockito.when;
import java.lang.reflect.ParameterizedType;
import java.lang.reflect.Type;
import java.util.List;
import org.hl7.fhir.instance.model.api.IBase;
import org.hl7.fhir.instance.model.api.IBaseReference;
import org.junit.AfterClass;
import org.junit.Test;
import org.mockito.ArgumentCaptor;
import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
import ca.uhn.fhir.context.FhirContext;
@ -31,9 +12,26 @@ import ca.uhn.fhir.model.dstu2.resource.Bundle;
import ca.uhn.fhir.model.dstu2.resource.Observation;
import ca.uhn.fhir.model.dstu2.resource.Organization;
import ca.uhn.fhir.model.dstu2.resource.Patient;
import ca.uhn.fhir.model.primitive.BooleanDt;
import ca.uhn.fhir.model.primitive.MarkdownDt;
import ca.uhn.fhir.model.primitive.StringDt;
import ca.uhn.fhir.parser.DataFormatException;
import org.hl7.fhir.instance.model.api.IBase;
import org.hl7.fhir.instance.model.api.IBaseExtension;
import org.hl7.fhir.instance.model.api.IBaseReference;
import org.hl7.fhir.instance.model.api.IPrimitiveType;
import org.junit.AfterClass;
import org.junit.Test;
import org.mockito.ArgumentCaptor;
import java.lang.reflect.ParameterizedType;
import java.lang.reflect.Type;
import java.util.List;
import static org.hamcrest.Matchers.containsInAnyOrder;
import static org.junit.Assert.*;
import static org.mockito.Mockito.mock;
import static org.mockito.Mockito.when;
public class FhirTerserDstu2Test {
@ -180,6 +178,597 @@ public class FhirTerserDstu2Test {
assertEquals(1, refs.size());
assertSame(ref, refs.get(0));
}
@Test
public void testGetValues() {
Patient p = new Patient();
p.setActive(true);
p.addUndeclaredExtension(false, "http://acme.org/extension", new StringDt("value"));
p.addUndeclaredExtension(false, "http://acme.org/otherExtension", new StringDt("otherValue"));
p.addUndeclaredExtension(true, "http://acme.org/modifierExtension", new StringDt("modifierValue"));
p.addUndeclaredExtension(false, "http://acme.org/parentExtension").addUndeclaredExtension(false, "http://acme.org/childExtension", new StringDt("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IPrimitiveType);
assertTrue(values.get(0) instanceof BooleanDt);
assertTrue(((BooleanDt) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("value", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
}
@Test
public void testGetValuesAndModify() {
Patient p = new Patient();
p.setActive(true);
p.addUndeclaredExtension(false, "http://acme.org/extension", new StringDt("value"));
p.addUndeclaredExtension(false, "http://acme.org/otherExtension", new StringDt("otherValue"));
p.addUndeclaredExtension(true, "http://acme.org/modifierExtension", new StringDt("modifierValue"));
p.addUndeclaredExtension(false, "http://acme.org/parentExtension").addUndeclaredExtension(false, "http://acme.org/childExtension", new StringDt("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IPrimitiveType);
assertTrue(values.get(0) instanceof BooleanDt);
assertTrue(((BooleanDt) values.get(0)).getValue());
((BooleanDt) values.get(0)).setValue(Boolean.FALSE);
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.active");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IPrimitiveType);
assertTrue(values.get(0) instanceof BooleanDt);
assertFalse(((BooleanDt) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("value", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
((ExtensionDt) values.get(0)).setValue(new StringDt("modifiedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifiedValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
((ExtensionDt) values.get(0)).setValue(new StringDt("modifiedModifierValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifiedModifierValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
((ExtensionDt) values.get(0)).setValue(new StringDt("modifiedNestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifiedNestedValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
}
@Test
public void testGetValuesMultiple() {
Patient p = new Patient();
p.addUndeclaredExtension(false, "http://acme.org/extension", new StringDt("value1"));
p.addUndeclaredExtension(false, "http://acme.org/extension", new StringDt("value2"));
p.addUndeclaredExtension(false, "http://acme.org/otherExtension", new StringDt("otherValue"));
p.addUndeclaredExtension(true, "http://acme.org/modifierExtension", new StringDt("modifierValue1"));
p.addUndeclaredExtension(true, "http://acme.org/modifierExtension", new StringDt("modifierValue2"));
p.addUndeclaredExtension(false, "http://acme.org/parentExtension").addUndeclaredExtension(false, "http://acme.org/childExtension", new StringDt("nestedValue1"));
p.addUndeclaredExtension(false, "http://acme.org/parentExtension").addUndeclaredExtension(false, "http://acme.org/childExtension", new StringDt("nestedValue2"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("value1", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(1)).getUrl());
assertEquals("value2", ((StringDt) ((ExtensionDt) values.get(1)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifierValue1", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(1)).getUrl());
assertEquals("modifierValue2", ((StringDt) ((ExtensionDt) values.get(1)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("nestedValue1", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(1)).getUrl());
assertEquals("nestedValue2", ((StringDt) ((ExtensionDt) values.get(1)).getValue()).getValueAsString());
}
@Test
public void testGetValuesWithWantedClass() {
Patient p = new Patient();
p.setActive(true);
p.addUndeclaredExtension(false, "http://acme.org/extension", new StringDt("value"));
p.addUndeclaredExtension(false, "http://acme.org/otherExtension", new StringDt("otherValue"));
p.addUndeclaredExtension(true, "http://acme.org/modifierExtension", new StringDt("modifierValue"));
p.addUndeclaredExtension(false, "http://acme.org/parentExtension").addUndeclaredExtension(false, "http://acme.org/childExtension", new StringDt("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<IPrimitiveType> values = ourCtx.newTerser().getValues(p, "Patient.active", IPrimitiveType.class);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof BooleanDt);
assertTrue(((BooleanDt) values.get(0)).getValue());
List<ExtensionDt> extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", ExtensionDt.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringDt);
assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
assertEquals("value", ((StringDt) extValues.get(0).getValue()).getValueAsString());
extValues = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", ExtensionDt.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringDt);
assertEquals("http://acme.org/modifierExtension", extValues.get(0).getUrl());
assertEquals("modifierValue", ((StringDt) (extValues.get(0).getValue())).getValueAsString());
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", ExtensionDt.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringDt);
assertEquals("http://acme.org/childExtension", extValues.get(0).getUrl());
assertEquals("nestedValue", ((StringDt) extValues.get(0).getValue()).getValueAsString());
}
@Test
public void testGetValuesWithWantedClassAndModify() {
Patient p = new Patient();
p.setActive(true);
p.addUndeclaredExtension(false, "http://acme.org/extension", new StringDt("value"));
p.addUndeclaredExtension(false, "http://acme.org/otherExtension", new StringDt("otherValue"));
p.addUndeclaredExtension(true, "http://acme.org/modifierExtension", new StringDt("modifierValue"));
p.addUndeclaredExtension(false, "http://acme.org/parentExtension").addUndeclaredExtension(false, "http://acme.org/childExtension", new StringDt("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<IPrimitiveType> values = ourCtx.newTerser().getValues(p, "Patient.active", IPrimitiveType.class);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof BooleanDt);
assertTrue(((BooleanDt) values.get(0)).getValue());
((BooleanDt) values.get(0)).setValue(Boolean.FALSE);
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.active", IPrimitiveType.class);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof BooleanDt);
assertFalse(((BooleanDt) values.get(0)).getValue());
List<ExtensionDt> extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", ExtensionDt.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringDt);
assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
assertEquals("value", ((StringDt) (extValues.get(0).getValue())).getValueAsString());
extValues.get(0).setValue(new StringDt("modifiedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", ExtensionDt.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringDt);
assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
assertEquals("modifiedValue", ((StringDt) (extValues.get(0).getValue())).getValueAsString());
extValues = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", ExtensionDt.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringDt);
assertEquals("http://acme.org/modifierExtension", extValues.get(0).getUrl());
assertEquals("modifierValue", ((StringDt) (extValues.get(0).getValue())).getValueAsString());
extValues.get(0).setValue(new StringDt("modifiedModifierValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
extValues = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", ExtensionDt.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringDt);
assertEquals("http://acme.org/modifierExtension", extValues.get(0).getUrl());
assertEquals("modifiedModifierValue", ((StringDt) (extValues.get(0).getValue())).getValueAsString());
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", ExtensionDt.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringDt);
assertEquals("http://acme.org/childExtension", extValues.get(0).getUrl());
assertEquals("nestedValue", ((StringDt) extValues.get(0).getValue()).getValueAsString());
extValues.get(0).setValue(new StringDt("modifiedNestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", ExtensionDt.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringDt);
assertEquals("http://acme.org/childExtension", extValues.get(0).getUrl());
assertEquals("modifiedNestedValue", ((StringDt) extValues.get(0).getValue()).getValueAsString());
}
@Test
public void testGetValuesWithWantedClassAndTheCreate() {
Patient p = new Patient();
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<IPrimitiveType> values = ourCtx.newTerser().getValues(p, "Patient.active", IPrimitiveType.class, true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof BooleanDt);
assertNull(((BooleanDt) values.get(0)).getValue());
List<ExtensionDt> extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", ExtensionDt.class, true);
assertEquals(1, extValues.size());
assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
assertNull(extValues.get(0).getValue());
extValues = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", ExtensionDt.class, true);
assertEquals(1, extValues.size());
assertEquals("http://acme.org/modifierExtension", extValues.get(0).getUrl());
assertNull(extValues.get(0).getValue());
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", ExtensionDt.class, true);
assertEquals(1, extValues.size());
assertEquals("http://acme.org/childExtension", extValues.get(0).getUrl());
assertNull(extValues.get(0).getValue());
}
@Test
public void testGetValuesWithTheAddExtensionAndModify() {
Patient p = new Patient();
p.setActive(true);
p.addUndeclaredExtension(false, "http://acme.org/extension", new StringDt("value"));
p.addUndeclaredExtension(false, "http://acme.org/otherExtension", new StringDt("otherValue"));
p.addUndeclaredExtension(true, "http://acme.org/modifierExtension", new StringDt("modifierValue"));
p.addUndeclaredExtension(false, "http://acme.org/parentExtension").addUndeclaredExtension(false, "http://acme.org/childExtension", new StringDt("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IPrimitiveType);
assertTrue(values.get(0) instanceof BooleanDt);
assertTrue(((BooleanDt) values.get(0)).getValue());
// No change.
values = ourCtx.newTerser().getValues(p, "Patient.active", false, true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IPrimitiveType);
assertTrue(values.get(0) instanceof BooleanDt);
assertTrue(((BooleanDt) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("value", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", false, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("value", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(1)).getUrl());
assertNull(((ExtensionDt) values.get(1)).getValue());
((ExtensionDt) values.get(1)).setValue(new StringDt("addedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(1)).getUrl());
assertEquals("addedValue", ((StringDt) ((ExtensionDt) values.get(1)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", false, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(1)).getUrl());
assertNull(((ExtensionDt) values.get(1)).getValue());
((ExtensionDt) values.get(1)).setValue(new StringDt("addedModifierValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(1)).getUrl());
assertEquals("addedModifierValue", ((StringDt) ((ExtensionDt) values.get(1)).getValue()).getValueAsString());
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", false, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(1)).getUrl());
assertNull(((ExtensionDt) values.get(1)).getValue());
((ExtensionDt) values.get(1)).setValue(new StringDt("addedNestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(1)).getUrl());
assertEquals("addedNestedValue", ((StringDt) ((ExtensionDt) values.get(1)).getValue()).getValueAsString());
}
@Test
public void testGetValuesWithTheCreate() {
Patient p = new Patient();
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IPrimitiveType);
assertTrue(values.get(0) instanceof BooleanDt);
assertNull(((BooleanDt) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(0)).getUrl());
assertNull(((ExtensionDt) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(0)).getUrl());
assertNull(((ExtensionDt) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(0)).getUrl());
assertNull(((ExtensionDt) values.get(0)).getValue());
}
@Test
public void testGetValuesWithTheCreateAndTheAddExtensionAndModify() {
Patient p = new Patient();
p.setActive(true);
p.addUndeclaredExtension(false, "http://acme.org/extension", new StringDt("value"));
p.addUndeclaredExtension(false, "http://acme.org/otherExtension", new StringDt("otherValue"));
p.addUndeclaredExtension(true, "http://acme.org/modifierExtension", new StringDt("modifierValue"));
p.addUndeclaredExtension(false, "http://acme.org/parentExtension").addUndeclaredExtension(false, "http://acme.org/childExtension", new StringDt("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IPrimitiveType);
assertTrue(values.get(0) instanceof BooleanDt);
assertTrue(((BooleanDt) values.get(0)).getValue());
// No change.
values = ourCtx.newTerser().getValues(p, "Patient.active", true, true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IPrimitiveType);
assertTrue(values.get(0) instanceof BooleanDt);
assertTrue(((BooleanDt) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("value", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", true, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("value", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(1)).getUrl());
assertNull(((ExtensionDt) values.get(1)).getValue());
((ExtensionDt) values.get(1)).setValue(new StringDt("addedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(1)).getUrl());
assertEquals("addedValue", ((StringDt) ((ExtensionDt) values.get(1)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", true, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(1)).getUrl());
assertNull(((ExtensionDt) values.get(1)).getValue());
((ExtensionDt) values.get(1)).setValue(new StringDt("addedModifierValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(1)).getUrl());
assertEquals("addedModifierValue", ((StringDt) ((ExtensionDt) values.get(1)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", true, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(1)).getUrl());
assertNull(((ExtensionDt) values.get(1)).getValue());
((ExtensionDt) values.get(1)).setValue(new StringDt("addedNestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(1)).getUrl());
assertEquals("addedNestedValue", ((StringDt) ((ExtensionDt) values.get(1)).getValue()).getValueAsString());
}
@Test
public void testGetValuesWithTheCreateAndNoOverwrite() {
Patient p = new Patient();
p.setActive(true);
p.addUndeclaredExtension(false, "http://acme.org/extension", new StringDt("value"));
p.addUndeclaredExtension(false, "http://acme.org/otherExtension", new StringDt("otherValue"));
p.addUndeclaredExtension(true, "http://acme.org/modifierExtension", new StringDt("modifierValue"));
p.addUndeclaredExtension(false, "http://acme.org/parentExtension").addUndeclaredExtension(false, "http://acme.org/childExtension", new StringDt("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IPrimitiveType);
assertTrue(values.get(0) instanceof BooleanDt);
assertTrue(((BooleanDt) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/extension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("value", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/modifierExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof ExtensionDt);
assertEquals("http://acme.org/childExtension", ((ExtensionDt) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringDt) ((ExtensionDt) values.get(0)).getValue()).getValueAsString());
}
@Test
public void testVisitWithModelVisitor2() {

723
hapi-fhir-structures-dstu3/src/test/java/ca/uhn/fhir/util/FhirTerserDstu3Test.java
View File

@ -1,41 +1,27 @@
package ca.uhn.fhir.util;
import static org.hamcrest.Matchers.containsInAnyOrder;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertSame;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import static org.mockito.Mockito.mock;
import static org.mockito.Mockito.when;
import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.parser.DataFormatException;
import org.hl7.fhir.dstu3.model.*;
import org.hl7.fhir.dstu3.model.Patient.LinkType;
import org.hl7.fhir.instance.model.api.IBase;
import org.hl7.fhir.instance.model.api.IBaseExtension;
import org.hl7.fhir.instance.model.api.IBaseReference;
import org.junit.AfterClass;
import org.junit.Test;
import org.mockito.ArgumentCaptor;
import java.lang.reflect.ParameterizedType;
import java.lang.reflect.Type;
import java.util.ArrayList;
import java.util.List;
import org.hl7.fhir.dstu3.model.Bundle;
import org.hl7.fhir.dstu3.model.Extension;
import org.hl7.fhir.dstu3.model.Identifier;
import org.hl7.fhir.dstu3.model.MarkdownType;
import org.hl7.fhir.dstu3.model.Money;
import org.hl7.fhir.dstu3.model.Observation;
import org.hl7.fhir.dstu3.model.Organization;
import org.hl7.fhir.dstu3.model.Patient;
import org.hl7.fhir.dstu3.model.Patient.LinkType;
import org.hl7.fhir.dstu3.model.Quantity;
import org.hl7.fhir.dstu3.model.Reference;
import org.hl7.fhir.dstu3.model.StringType;
import org.hl7.fhir.instance.model.api.IBase;
import org.hl7.fhir.instance.model.api.IBaseReference;
import org.junit.AfterClass;
import org.junit.Test;
import org.mockito.ArgumentCaptor;
import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.parser.DataFormatException;
import static org.hamcrest.Matchers.containsInAnyOrder;
import static org.junit.Assert.*;
import static org.mockito.Mockito.mock;
import static org.mockito.Mockito.when;
public class FhirTerserDstu3Test {
@ -183,6 +169,683 @@ public class FhirTerserDstu3Test {
assertSame(ref, refs.get(0));
}
@Test
public void testGetValues() {
Patient p = new Patient();
p.setActive(true);
p.addExtension()
.setUrl("http://acme.org/extension")
.setValue(new StringType("value"));
p.addExtension()
.setUrl("http://acme.org/otherExtension")
.setValue(new StringType("otherValue"));
p.addModifierExtension()
.setUrl("http://acme.org/modifierExtension")
.setValue(new StringType("modifierValue"));
p.addExtension()
.setUrl("http://acme.org/parentExtension")
.addExtension()
.setUrl("http://acme.org/childExtension")
.setValue(new StringType("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof PrimitiveType);
assertTrue(values.get(0) instanceof BooleanType);
assertTrue(((BooleanType) values.get(0)).booleanValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
}
@Test
public void testGetValuesAndModify() {
Patient p = new Patient();
p.setActive(true);
p.addExtension()
.setUrl("http://acme.org/extension")
.setValue(new StringType("value"));
p.addExtension()
.setUrl("http://acme.org/otherExtension")
.setValue(new StringType("otherValue"));
p.addModifierExtension()
.setUrl("http://acme.org/modifierExtension")
.setValue(new StringType("modifierValue"));
p.addExtension()
.setUrl("http://acme.org/parentExtension")
.addExtension()
.setUrl("http://acme.org/childExtension")
.setValue(new StringType("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof PrimitiveType);
assertTrue(values.get(0) instanceof BooleanType);
assertTrue(((BooleanType) values.get(0)).booleanValue());
((BooleanType) values.get(0)).setValue(Boolean.FALSE);
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.active");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof PrimitiveType);
assertTrue(values.get(0) instanceof BooleanType);
assertFalse(((BooleanType) values.get(0)).booleanValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
((Extension) values.get(0)).setValue(new StringType("modifiedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
assertEquals("modifiedValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
((Extension) values.get(0)).setValue(new StringType("modifiedModifierValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(0)).getUrl());
assertEquals("modifiedModifierValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
((Extension) values.get(0)).setValue(new StringType("modifiedNestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(0)).getUrl());
assertEquals("modifiedNestedValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
}
@Test
public void testGetValuesMultiple() {
Patient p = new Patient();
p.addExtension()
.setUrl("http://acme.org/extension")
.setValue(new StringType("value1"));
p.addExtension()
.setUrl("http://acme.org/extension")
.setValue(new StringType("value2"));
p.addExtension()
.setUrl("http://acme.org/otherExtension")
.setValue(new StringType("otherValue"));
p.addModifierExtension()
.setUrl("http://acme.org/modifierExtension")
.setValue(new StringType("modifierValue1"));
p.addModifierExtension()
.setUrl("http://acme.org/modifierExtension")
.setValue(new StringType("modifierValue2"));
p.addExtension()
.setUrl("http://acme.org/parentExtension")
.addExtension()
.setUrl("http://acme.org/childExtension")
.setValue(new StringType("nestedValue1"));
p.addExtension()
.setUrl("http://acme.org/parentExtension")
.addExtension()
.setUrl("http://acme.org/childExtension")
.setValue(new StringType("nestedValue2"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
assertEquals("value1", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(1)).getUrl());
assertEquals("value2", ((StringType) ((Extension) values.get(1)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(0)).getUrl());
assertEquals("modifierValue1", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(1)).getUrl());
assertEquals("modifierValue2", ((StringType) ((Extension) values.get(1)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(0)).getUrl());
assertEquals("nestedValue1", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(1)).getUrl());
assertEquals("nestedValue2", ((StringType) ((Extension) values.get(1)).getValue()).getValueAsString());
}
@Test
public void testGetValuesWithWantedClass() {
Patient p = new Patient();
p.setActive(true);
p.addExtension()
.setUrl("http://acme.org/extension")
.setValue(new StringType("value"));
p.addExtension()
.setUrl("http://acme.org/otherExtension")
.setValue(new StringType("otherValue"));
p.addModifierExtension()
.setUrl("http://acme.org/modifierExtension")
.setValue(new StringType("modifierValue"));
p.addExtension()
.setUrl("http://acme.org/parentExtension")
.addExtension()
.setUrl("http://acme.org/childExtension")
.setValue(new StringType("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<PrimitiveType> values = ourCtx.newTerser().getValues(p, "Patient.active", PrimitiveType.class);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof BooleanType);
assertTrue(((BooleanType) values.get(0)).booleanValue());
List<Extension> extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", Extension.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringType);
assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
assertEquals("value", ((StringType) (extValues.get(0).getValue())).getValueAsString());
extValues = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", Extension.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringType);
assertEquals("http://acme.org/modifierExtension", extValues.get(0).getUrl());
assertEquals("modifierValue", ((StringType) (extValues.get(0).getValue())).getValueAsString());
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", Extension.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringType);
assertEquals("http://acme.org/childExtension", extValues.get(0).getUrl());
assertEquals("nestedValue", ((StringType) extValues.get(0).getValue()).getValueAsString());
}
@Test
public void testGetValuesWithWantedClassAndModify() {
Patient p = new Patient();
p.setActive(true);
p.addExtension()
.setUrl("http://acme.org/extension")
.setValue(new StringType("value"));
p.addExtension()
.setUrl("http://acme.org/otherExtension")
.setValue(new StringType("otherValue"));
p.addModifierExtension()
.setUrl("http://acme.org/modifierExtension")
.setValue(new StringType("modifierValue"));
p.addExtension()
.setUrl("http://acme.org/parentExtension")
.addExtension()
.setUrl("http://acme.org/childExtension")
.setValue(new StringType("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<PrimitiveType> values = ourCtx.newTerser().getValues(p, "Patient.active", PrimitiveType.class);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof BooleanType);
assertTrue(((BooleanType) values.get(0)).booleanValue());
((BooleanType) values.get(0)).setValue(Boolean.FALSE);
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.active", PrimitiveType.class);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof BooleanType);
assertFalse(((BooleanType) values.get(0)).booleanValue());
List<Extension> extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", Extension.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringType);
assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
assertEquals("value", ((StringType) (extValues.get(0).getValue())).getValueAsString());
extValues.get(0).setValue(new StringType("modifiedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", Extension.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringType);
assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
assertEquals("modifiedValue", ((StringType) (extValues.get(0).getValue())).getValueAsString());
extValues = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", Extension.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringType);
assertEquals("http://acme.org/modifierExtension", extValues.get(0).getUrl());
assertEquals("modifierValue", ((StringType) (extValues.get(0).getValue())).getValueAsString());
extValues.get(0).setValue(new StringType("modifiedModifierValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
extValues = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", Extension.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringType);
assertEquals("http://acme.org/modifierExtension", extValues.get(0).getUrl());
assertEquals("modifiedModifierValue", ((StringType) (extValues.get(0).getValue())).getValueAsString());
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", Extension.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringType);
assertEquals("http://acme.org/childExtension", extValues.get(0).getUrl());
assertEquals("nestedValue", ((StringType) extValues.get(0).getValue()).getValueAsString());
extValues.get(0).setValue(new StringType("modifiedNestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", Extension.class);
assertEquals(1, extValues.size());
assertTrue(extValues.get(0).getValue() instanceof StringType);
assertEquals("http://acme.org/childExtension", extValues.get(0).getUrl());
assertEquals("modifiedNestedValue", ((StringType) extValues.get(0).getValue()).getValueAsString());
}
@Test
public void testGetValuesWithWantedClassAndTheCreate() {
Patient p = new Patient();
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<PrimitiveType> values = ourCtx.newTerser().getValues(p, "Patient.active", PrimitiveType.class, true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof BooleanType);
assertNull(((BooleanType) values.get(0)).getValue());
List<Extension> extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", Extension.class, true);
assertEquals(1, extValues.size());
assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
assertNull(extValues.get(0).getValue());
extValues = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", Extension.class, true);
assertEquals(1, extValues.size());
assertEquals("http://acme.org/modifierExtension", extValues.get(0).getUrl());
assertNull(extValues.get(0).getValue());
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", Extension.class, true);
assertEquals(1, extValues.size());
assertEquals("http://acme.org/childExtension", extValues.get(0).getUrl());
assertNull(extValues.get(0).getValue());
}
@Test
public void testGetValuesWithTheAddExtensionAndModify() {
Patient p = new Patient();
p.setActive(true);
p.addExtension()
.setUrl("http://acme.org/extension")
.setValue(new StringType("value"));
p.addExtension()
.setUrl("http://acme.org/otherExtension")
.setValue(new StringType("otherValue"));
p.addModifierExtension()
.setUrl("http://acme.org/modifierExtension")
.setValue(new StringType("modifierValue"));
p.addExtension()
.setUrl("http://acme.org/parentExtension")
.addExtension()
.setUrl("http://acme.org/childExtension")
.setValue(new StringType("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof PrimitiveType);
assertTrue(values.get(0) instanceof BooleanType);
assertTrue(((BooleanType) values.get(0)).booleanValue());
// No change.
values = ourCtx.newTerser().getValues(p, "Patient.active", false, true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof PrimitiveType);
assertTrue(values.get(0) instanceof BooleanType);
assertTrue(((BooleanType) values.get(0)).booleanValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", false, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(1)).getUrl());
assertNull(((Extension) values.get(1)).getValue());
((Extension) values.get(1)).setValue(new StringType("addedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(1)).getUrl());
assertEquals("addedValue", ((StringType) ((Extension) values.get(1)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", false, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(1)).getUrl());
assertNull(((Extension) values.get(1)).getValue());
((Extension) values.get(1)).setValue(new StringType("addedModifierValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(1)).getUrl());
assertEquals("addedModifierValue", ((StringType) ((Extension) values.get(1)).getValue()).getValueAsString());
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", false, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(1)).getUrl());
assertNull(((Extension) values.get(1)).getValue());
((Extension) values.get(1)).setValue(new StringType("addedNestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(1)).getUrl());
assertEquals("addedNestedValue", ((StringType) ((Extension) values.get(1)).getValue()).getValueAsString());
}
@Test
public void testGetValuesWithTheCreate() {
Patient p = new Patient();
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof PrimitiveType);
assertTrue(values.get(0) instanceof BooleanType);
assertNull(((BooleanType) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
assertNull(((Extension) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(0)).getUrl());
assertNull(((Extension) values.get(0)).getValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(0)).getUrl());
assertNull(((Extension) values.get(0)).getValue());
}
@Test
public void testGetValuesWithTheCreateAndTheAddExtensionAndModify() {
Patient p = new Patient();
p.setActive(true);
p.addExtension()
.setUrl("http://acme.org/extension")
.setValue(new StringType("value"));
p.addExtension()
.setUrl("http://acme.org/otherExtension")
.setValue(new StringType("otherValue"));
p.addModifierExtension()
.setUrl("http://acme.org/modifierExtension")
.setValue(new StringType("modifierValue"));
p.addExtension()
.setUrl("http://acme.org/parentExtension")
.addExtension()
.setUrl("http://acme.org/childExtension")
.setValue(new StringType("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof PrimitiveType);
assertTrue(values.get(0) instanceof BooleanType);
assertTrue(((BooleanType) values.get(0)).booleanValue());
// No change.
values = ourCtx.newTerser().getValues(p, "Patient.active", true, true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof PrimitiveType);
assertTrue(values.get(0) instanceof BooleanType);
assertTrue(((BooleanType) values.get(0)).booleanValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", true, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(1)).getUrl());
assertNull(((Extension) values.get(1)).getValue());
((Extension) values.get(1)).setValue(new StringType("addedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(1)).getUrl());
assertEquals("addedValue", ((StringType) ((Extension) values.get(1)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", true, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(1)).getUrl());
assertNull(((Extension) values.get(1)).getValue());
((Extension) values.get(1)).setValue(new StringType("addedModifierValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(1)).getUrl());
assertEquals("addedModifierValue", ((StringType) ((Extension) values.get(1)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')");
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", true, true);
assertEquals(2, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(1)).getUrl());
assertNull(((Extension) values.get(1)).getValue());
((Extension) values.get(1)).setValue(new StringType("addedNestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
assertTrue(values.get(1) instanceof IBaseExtension);
assertTrue(values.get(1) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(1)).getUrl());
assertEquals("addedNestedValue", ((StringType) ((Extension) values.get(1)).getValue()).getValueAsString());
}
@Test
public void testGetValuesWithTheCreateAndNoOverwrite() {
Patient p = new Patient();
p.setActive(true);
p.addExtension()
.setUrl("http://acme.org/extension")
.setValue(new StringType("value"));
p.addExtension()
.setUrl("http://acme.org/otherExtension")
.setValue(new StringType("otherValue"));
p.addModifierExtension()
.setUrl("http://acme.org/modifierExtension")
.setValue(new StringType("modifierValue"));
p.addExtension()
.setUrl("http://acme.org/parentExtension")
.addExtension()
.setUrl("http://acme.org/childExtension")
.setValue(new StringType("nestedValue"));
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof PrimitiveType);
assertTrue(values.get(0) instanceof BooleanType);
assertTrue(((BooleanType) values.get(0)).booleanValue());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/modifierExtension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/modifierExtension", ((Extension) values.get(0)).getUrl());
assertEquals("modifierValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/parentExtension').extension('http://acme.org/childExtension')", true);
assertEquals(1, values.size());
assertTrue(values.get(0) instanceof IBaseExtension);
assertTrue(values.get(0) instanceof Extension);
assertEquals("http://acme.org/childExtension", ((Extension) values.get(0)).getUrl());
assertEquals("nestedValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
}
@Test
public void testVisitWithModelVisitor2() {
IModelVisitor2 visitor = mock(IModelVisitor2.class);

9
src/changes/changes.xml
View File

@ -116,6 +116,15 @@
<![CDATA[<a href="https://github.com/hapifhir/hapi-fhir-jpaserver-starter/blob/master/src/main/java/ca/uhn/fhir/jpa/demo/FhirServerConfig.java#L62">the example project</a>]]>
if they are not already.
</action>
<action type="add">
The FhirTerser <![CDATA[<code>getValues(...)</code>]]> methods have been overloaded. The terser can now be
used to create a null-valued element where none exists. Additionally, the terser can now add a null-valued
extension where one or more such extensions already exist. These changes allow better population of FHIR
elements provided an arbitrary FHIR path.
</action>
<action type="fix">
The FhirTerser <![CDATA[<code>getValues(...)</code>]]> methods were not properly handling modifier
extensions for verions of FHIR prior to DSTU3. This has been corrected.
<action type="fix">
When updating resources in the JPA server, a bug caused index table entries to be refreshed
sometimes even though the index value hadn't changed. This issue did not cause incorrect search