Starting work on transaction interaction
This commit is contained in:
jamesagnew
parent
fab60d1ac8
commit
62b909ff22
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@ -18,6 +18,9 @@
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Introduce StringParameter type which can be used as a RESTful operation search parameter
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type. StringParameter allows ":exact" matches to be specified in clients, and handled in servers.
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</action>
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<action type="add">
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Parsers (XML/JSON) now support deleted entries in bundles
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</action>
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</release>
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</body>
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</document>
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@ -142,10 +142,21 @@ public class XmlParser extends BaseParser implements IParser {
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}
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for (BundleEntry nextEntry : theBundle.getEntries()) {
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eventWriter.writeStartElement("entry");
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boolean deleted=false;
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if (nextEntry.getDeletedAt() != null && nextEntry.getDeletedAt().isEmpty()==false) {
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deleted=true;
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eventWriter.writeStartElement("at","deleted-entry",TOMBSTONES_NS);
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eventWriter.writeNamespace("at", TOMBSTONES_NS);
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eventWriter.writeAttribute("ref", nextEntry.getId().getValueAsString());
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eventWriter.writeAttribute("when", nextEntry.getDeletedAt().getValueAsString());
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}else {
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eventWriter.writeStartElement("entry");
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}
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writeTagWithTextNode(eventWriter, "title", nextEntry.getTitle());
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writeTagWithTextNode(eventWriter, "id", nextEntry.getId());
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writeOptionalTagWithTextNode(eventWriter, "title", nextEntry.getTitle());
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if (!deleted) {
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writeTagWithTextNode(eventWriter, "id", nextEntry.getId());
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}
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writeOptionalTagWithTextNode(eventWriter, "updated", nextEntry.getUpdated());
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writeOptionalTagWithTextNode(eventWriter, "published", nextEntry.getPublished());
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@ -163,17 +174,17 @@ public class XmlParser extends BaseParser implements IParser {
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writeAtomLink(eventWriter, "self", nextEntry.getLinkSelf());
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}
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eventWriter.writeStartElement("content");
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eventWriter.writeAttribute("type", "text/xml");
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IResource resource = nextEntry.getResource();
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if (resource != null) {
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eventWriter.writeStartElement("content");
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eventWriter.writeAttribute("type", "text/xml");
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encodeResourceToXmlStreamWriter(resource, eventWriter, false);
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eventWriter.writeEndElement(); // content
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} else {
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ourLog.warn("Bundle entry contains null resource");
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ourLog.debug("Bundle entry contains null resource");
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}
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eventWriter.writeEndElement(); // content
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eventWriter.writeEndElement(); // entry
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}
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@ -0,0 +1,79 @@
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package ca.uhn.fhir.rest.method;
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import java.io.IOException;
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import java.io.Reader;
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import java.lang.reflect.Method;
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import java.util.List;
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import java.util.Map;
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import javax.servlet.http.HttpServletResponse;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.model.api.Bundle;
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import ca.uhn.fhir.model.api.IResource;
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import ca.uhn.fhir.model.dstu.valueset.RestfulOperationSystemEnum;
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import ca.uhn.fhir.model.dstu.valueset.RestfulOperationTypeEnum;
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import ca.uhn.fhir.rest.client.BaseClientInvocation;
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import ca.uhn.fhir.rest.server.RestfulServer;
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import ca.uhn.fhir.rest.server.exceptions.BaseServerResponseException;
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import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
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import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
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public class TransactionMethodBinding extends BaseResourceReturningMethodBinding {
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public TransactionMethodBinding(Method theMethod, FhirContext theConetxt, Object theProvider) {
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super(null, theMethod, theConetxt, theProvider);
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}
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@Override
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public Bundle invokeClient(String theResponseMimeType, Reader theResponseReader, int theResponseStatusCode, Map<String, List<String>> theHeaders) throws IOException, BaseServerResponseException {
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// TODO Auto-generated method stub
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return null;
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}
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@Override
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public String getResourceName() {
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return null;
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}
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@Override
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public RestfulOperationTypeEnum getResourceOperationType() {
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return null;
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}
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@Override
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public RestfulOperationSystemEnum getSystemOperationType() {
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return RestfulOperationSystemEnum.TRANSACTION;
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}
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@Override
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public BaseClientInvocation invokeClient(Object[] theArgs) throws InternalErrorException {
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// TODO Auto-generated method stub
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return null;
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}
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@Override
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public void invokeServer(RestfulServer theServer, Request theRequest, HttpServletResponse theResponse) throws BaseServerResponseException, IOException {
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// TODO Auto-generated method stub
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}
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@Override
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public boolean incomingServerRequestMatchesMethod(Request theRequest) {
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// TODO Auto-generated method stub
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return false;
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}
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@Override
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public ReturnTypeEnum getReturnType() {
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return ReturnTypeEnum.BUNDLE;
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}
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@Override
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public List<IResource> invokeServer(Request theRequest, Object[] theMethodParams) throws InvalidRequestException, InternalErrorException {
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// TODO Auto-generated method stub
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return null;
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}
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}
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@ -61,6 +61,7 @@ import ca.uhn.fhir.parser.JsonParserTest.MyPatientWithOneDeclaredExtension;
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public class XmlParserTest {
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(XmlParserTest.class);
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private static FhirContext ourCtx;
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@Test
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public void testEncodeBoundCode() {
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@ -346,14 +347,13 @@ public class XmlParserTest {
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+ "</Patient>";
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//@formatter:on
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FhirContext ctx = new FhirContext(Patient.class);
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Patient patient = ctx.newXmlParser().parseResource(Patient.class, msg);
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Patient patient = ourCtx.newXmlParser().parseResource(Patient.class, msg);
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assertEquals(NarrativeStatusEnum.GENERATED, patient.getText().getStatus().getValueAsEnum());
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assertEquals("<div xmlns=\"http://www.w3.org/1999/xhtml\">John Cardinal: 444333333 </div>", patient.getText().getDiv().getValueAsString());
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assertEquals("PRP1660", patient.getIdentifier().get(0).getValue().getValueAsString());
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String encoded = ctx.newXmlParser().encodeResourceToString(patient);
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String encoded = ourCtx.newXmlParser().encodeResourceToString(patient);
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Diff d = new Diff(new StringReader(msg), new StringReader(encoded));
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assertTrue(d.toString(), d.identical());
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@ -362,8 +362,7 @@ public class XmlParserTest {
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@Test
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public void testLoadAndEncodeDeclaredExtensions() throws ConfigurationException, DataFormatException, SAXException, IOException {
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FhirContext ctx = new FhirContext(ResourceWithExtensionsA.class);
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IParser p = new XmlParser(ctx);
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IParser p = ourCtx.newXmlParser();
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//@formatter:off
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String msg = "<ResourceWithExtensionsA xmlns=\"http://hl7.org/fhir\">\n" +
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@ -417,8 +416,7 @@ public class XmlParserTest {
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@Test
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public void testLoadAndEncodeUndeclaredExtensions() throws ConfigurationException, DataFormatException, SAXException, IOException {
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FhirContext ctx = new FhirContext(Patient.class);
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IParser p = new XmlParser(ctx);
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IParser p = ourCtx.newXmlParser();
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//@formatter:off
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String msg = "<Patient xmlns=\"http://hl7.org/fhir\">\n" +
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@ -472,8 +470,7 @@ public class XmlParserTest {
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@Test
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public void testParseWithXmlHeader() throws ConfigurationException, DataFormatException {
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FhirContext ctx = new FhirContext(Patient.class);
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IParser p = new XmlParser(ctx);
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IParser p = ourCtx.newXmlParser();
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//@formatter:off
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String msg = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>" +
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@ -492,8 +489,7 @@ public class XmlParserTest {
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@Test
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public void testLoadObservation() throws ConfigurationException, DataFormatException, IOException {
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FhirContext ctx = new FhirContext(Observation.class);
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IParser p = new XmlParser(ctx);
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IParser p = ourCtx.newXmlParser();
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String string = IOUtils.toString(XmlParserTest.class.getResourceAsStream("/observation-example-eeg.xml"));
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IResource resource = p.parseResource(string);
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@ -505,8 +501,7 @@ public class XmlParserTest {
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@Test
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public void testLoadPatient() throws ConfigurationException, DataFormatException, IOException {
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FhirContext ctx = new FhirContext();
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IParser p = new XmlParser(ctx);
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IParser p = ourCtx.newXmlParser();
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String string = IOUtils.toString(XmlParserTest.class.getResourceAsStream("/patient-example-dicom.xml"));
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IResource resource = p.parseResource(string);
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@ -527,8 +522,7 @@ public class XmlParserTest {
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@Test
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public void testLoadQuestionnaire() throws ConfigurationException, DataFormatException, IOException {
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FhirContext ctx = new FhirContext();
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IParser p = new XmlParser(ctx);
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IParser p = ourCtx.newXmlParser();
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String string = IOUtils.toString(XmlParserTest.class.getResourceAsStream("/questionnaire-example.xml"));
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IResource resource = p.parseResource(string);
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@ -546,12 +540,11 @@ public class XmlParserTest {
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+ "</Patient>";
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//@formatter:on
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FhirContext ctx = new FhirContext(Patient.class, ca.uhn.fhir.testmodel.Patient.class);
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Patient patient1 = ctx.newXmlParser().parseResource(Patient.class, msg);
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String encoded1 = ctx.newXmlParser().encodeResourceToString(patient1);
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Patient patient1 = ourCtx.newXmlParser().parseResource(Patient.class, msg);
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String encoded1 = ourCtx.newXmlParser().encodeResourceToString(patient1);
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ca.uhn.fhir.testmodel.Patient patient2 = ctx.newXmlParser().parseResource(ca.uhn.fhir.testmodel.Patient.class, msg);
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String encoded2 = ctx.newXmlParser().encodeResourceToString(patient2);
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ca.uhn.fhir.testmodel.Patient patient2 = ourCtx.newXmlParser().parseResource(ca.uhn.fhir.testmodel.Patient.class, msg);
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String encoded2 = ourCtx.newXmlParser().encodeResourceToString(patient2);
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Diff d = new Diff(new StringReader(encoded1), new StringReader(encoded2));
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assertTrue(d.toString(), d.identical());
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@ -683,19 +676,18 @@ public class XmlParserTest {
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public void testParseBundleDeletedEntry() {
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//@formatter:off
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String msg = "<feed xmlns=\"http://www.w3.org/2005/Atom\">\n" +
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" <title>FHIR Core Valuesets</title>\n" +
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" <id>http://hl7.org/fhir/profile/valuesets</id>\n" +
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" <link href=\"http://hl7.org/implement/standards/fhir/valuesets.xml\" rel=\"self\"/>\n" +
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" <updated>2014-02-10T04:11:24.435-00:00</updated>\n" +
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" <at:deleted-entry xmlns:at=\"http://purl.org/atompub/tombstones/1.0\" " +
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" ref=\"http://foo/Patient/1\" when=\"2013-02-10T04:11:24.435-00:00\">\n" +
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" <link rel=\"self\" href=\"http://foo/Patient/1/_history/2\"></link>\n" +
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" </at:deleted-entry>" +
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String msg = "<feed xmlns=\"http://www.w3.org/2005/Atom\">" +
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"<title>FHIR Core Valuesets</title>" +
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"<id>http://hl7.org/fhir/profile/valuesets</id>" +
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"<link rel=\"self\" href=\"http://hl7.org/implement/standards/fhir/valuesets.xml\"/>" +
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"<updated>2014-02-10T04:11:24.435+00:00</updated>" +
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"<at:deleted-entry xmlns:at=\"http://purl.org/atompub/tombstones/1.0\" ref=\"http://foo/Patient/1\" when=\"2013-02-10T04:11:24.435+00:00\">" +
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"<link rel=\"self\" href=\"http://foo/Patient/1/_history/2\"/>" +
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"</at:deleted-entry>" +
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"</feed>";
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//@formatter:on
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IParser p = new FhirContext(ValueSet.class).newXmlParser();
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IParser p = ourCtx.newXmlParser();
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Bundle bundle = p.parseBundle(msg);
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BundleEntry entry = bundle.getEntries().get(0);
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@ -703,6 +695,12 @@ public class XmlParserTest {
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assertEquals("http://foo/Patient/1", entry.getId().getValue());
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assertEquals("2013-02-10T04:11:24.435+00:00", entry.getDeletedAt().getValueAsString());
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assertEquals("http://foo/Patient/1/_history/2", entry.getLinkSelf().getValue());
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ourLog.info(ourCtx.newXmlParser().setPrettyPrint(true).encodeBundleToString(bundle));
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String encoded = ourCtx.newXmlParser().encodeBundleToString(bundle);
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assertEquals(msg,encoded);
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}
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@ -710,8 +708,7 @@ public class XmlParserTest {
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public void testParseBundleLarge() throws IOException {
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String msg = IOUtils.toString(XmlParser.class.getResourceAsStream("/atom-document-large.xml"));
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FhirContext ctx = new FhirContext(Patient.class);
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IParser p = ctx.newXmlParser();
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IParser p = ourCtx.newXmlParser();
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Bundle bundle = p.parseBundle(msg);
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assertEquals("http://spark.furore.com/fhir/_snapshot?id=327d6bb9-83b0-4929-aa91-6dd9c41e587b&start=0&_count=20", bundle.getLinkSelf().getValue());
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@ -725,7 +722,7 @@ public class XmlParserTest {
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public void testParseContainedResources() throws IOException {
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String msg = IOUtils.toString(XmlParser.class.getResourceAsStream("/contained-diagnosticreport.xml"));
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IParser p = new FhirContext(DiagnosticReport.class).newXmlParser();
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IParser p = ourCtx.newXmlParser();
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DiagnosticReport bundle = p.parseResource(DiagnosticReport.class, msg);
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ResourceReferenceDt result0 = bundle.getResult().get(0);
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@ -755,6 +752,7 @@ public class XmlParserTest {
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XMLUnit.setIgnoreAttributeOrder(true);
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XMLUnit.setIgnoreComments(true);
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XMLUnit.setIgnoreWhitespace(true);
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ourCtx = new FhirContext();
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}
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@Test
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@ -851,17 +849,16 @@ public class XmlParserTest {
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@Test
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public void testSimpleResourceEncode() throws IOException, SAXException {
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FhirContext ctx = new FhirContext(Observation.class);
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String xmlString = IOUtils.toString(JsonParser.class.getResourceAsStream("/example-patient-general.json"), Charset.forName("UTF-8"));
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Patient obs = ctx.newJsonParser().parseResource(Patient.class, xmlString);
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Patient obs = ourCtx.newJsonParser().parseResource(Patient.class, xmlString);
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List<ExtensionDt> undeclaredExtensions = obs.getContact().get(0).getName().getFamily().get(0).getUndeclaredExtensions();
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ExtensionDt undeclaredExtension = undeclaredExtensions.get(0);
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assertEquals("http://hl7.org/fhir/Profile/iso-21090#qualifier", undeclaredExtension.getUrl().getValue());
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ctx.newJsonParser().setPrettyPrint(true).encodeResourceToWriter(obs, new OutputStreamWriter(System.out));
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ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToWriter(obs, new OutputStreamWriter(System.out));
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IParser jsonParser = ctx.newXmlParser();
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IParser jsonParser = ourCtx.newXmlParser();
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String encoded = jsonParser.encodeResourceToString(obs);
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ourLog.info(encoded);
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@ -878,9 +875,9 @@ public class XmlParserTest {
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@Test
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public void testSimpleResourceEncodeWithCustomType() throws IOException, SAXException {
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FhirContext ctx = new FhirContext(MyObservationWithExtensions.class);
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FhirContext fhirCtx = new FhirContext(MyObservationWithExtensions.class);
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String xmlString = IOUtils.toString(JsonParser.class.getResourceAsStream("/example-patient-general.json"), Charset.forName("UTF-8"));
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MyObservationWithExtensions obs = ctx.newJsonParser().parseResource(MyObservationWithExtensions.class, xmlString);
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MyObservationWithExtensions obs = fhirCtx.newJsonParser().parseResource(MyObservationWithExtensions.class, xmlString);
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assertEquals(0, obs.getAllUndeclaredExtensions().size());
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assertEquals("aaaa", obs.getExtAtt().getContentType().getValue());
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@ -891,9 +888,9 @@ public class XmlParserTest {
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ExtensionDt undeclaredExtension = undeclaredExtensions.get(0);
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assertEquals("http://hl7.org/fhir/Profile/iso-21090#qualifier", undeclaredExtension.getUrl().getValue());
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ctx.newJsonParser().setPrettyPrint(true).encodeResourceToWriter(obs, new OutputStreamWriter(System.out));
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fhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToWriter(obs, new OutputStreamWriter(System.out));
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IParser jsonParser = ctx.newXmlParser();
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IParser jsonParser = fhirCtx.newXmlParser();
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String encoded = jsonParser.encodeResourceToString(obs);
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ourLog.info(encoded);
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@ -28,6 +28,7 @@ public class ResourceHistoryTag extends BaseTag implements Serializable {
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@JoinColumn(name="PID", referencedColumnName="PID"),
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@JoinColumn(name="VERSION", referencedColumnName="VERSION")
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}, foreignKey=@ForeignKey(name="FK_HT_RT"))
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@org.hibernate.annotations.ForeignKey(name="FK_HT_RT")
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private ResourceHistoryTable myResourceHistory;
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public ResourceHistoryTag() {
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@ -4,17 +4,14 @@ import java.util.Date;
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import javax.persistence.Column;
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import javax.persistence.Entity;
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import javax.persistence.ForeignKey;
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import javax.persistence.Index;
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import javax.persistence.JoinColumn;
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import javax.persistence.ManyToOne;
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import javax.persistence.Table;
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import javax.persistence.Temporal;
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import javax.persistence.TemporalType;
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@Entity
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@Table(name = "HFJ_SPIDX_DATE", indexes= {@Index(name="IDX_SP_DATE", columnList="SP_VALUE_LOW,SP_VALUE_HIGH")})
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//@org.hibernate.annotations.Table(appliesTo="HFJ_SPIDX_DATE",indexes= {@Index(name="IDX_SP_DATE", columnList="SP_VALUE_LOW,SP_VALUE_HIGH")})
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@Table(name = "HFJ_SPIDX_DATE")
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@org.hibernate.annotations.Table(appliesTo="HFJ_SPIDX_DATE",indexes= {
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@org.hibernate.annotations.Index(name="IDX_SP_DATE", columnNames= {"SP_VALUE_LOW","SP_VALUE_HIGH"})})
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public class ResourceIndexedSearchParamDate extends BaseResourceIndexedSearchParam {
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private static final long serialVersionUID = 1L;
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@ -9,6 +9,8 @@ import javax.persistence.Table;
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@Entity
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@Table(name = "HFJ_SPIDX_NUMBER", indexes= {@Index(name="IDX_SP_NUMBER", columnList="SP_VALUE")})
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@org.hibernate.annotations.Table(appliesTo="HFJ_SPIDX_NUMBER",indexes= {
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@org.hibernate.annotations.Index(name="IDX_SP_NUMBER", columnNames= {"SP_VALUE"})})
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public class ResourceIndexedSearchParamNumber extends BaseResourceIndexedSearchParam {
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||||
|
||||
private static final long serialVersionUID = 1L;
|
||||
|
|
|
|||
|
|
@ -7,6 +7,8 @@ import javax.persistence.Table;
|
|||
|
||||
@Entity
|
||||
@Table(name = "HFJ_SPIDX_STRING", indexes= {@Index(name="IDX_SP_STRING", columnList="SP_VALUE_NORMALIZED")})
|
||||
@org.hibernate.annotations.Table(appliesTo="HFJ_SPIDX_STRING",indexes= {
|
||||
@org.hibernate.annotations.Index(name="IDX_SP_STRING", columnNames= {"SP_VALUE_NORMALIZED"})})
|
||||
public class ResourceIndexedSearchParamString extends BaseResourceIndexedSearchParam {
|
||||
|
||||
private static final long serialVersionUID = 1L;
|
||||
|
|
|
|||
|
|
@ -6,7 +6,9 @@ import javax.persistence.Index;
|
|||
import javax.persistence.Table;
|
||||
|
||||
@Entity
|
||||
@Table(name = "HFJ_SPIDX_TOKEN", indexes = { @Index(name = "IDX_SP_STRING", columnList = "SP_SYSTEM,SP_VALUE") })
|
||||
@Table(name = "HFJ_SPIDX_TOKEN", indexes = { @Index(name = "IDX_SP_TOKEN", columnList = "SP_SYSTEM,SP_VALUE") })
|
||||
@org.hibernate.annotations.Table(appliesTo="HFJ_SPIDX_TOKEN",indexes= {
|
||||
@org.hibernate.annotations.Index(name="IDX_SP_TOKEN", columnNames= {"SP_SYSTEM","SP_VALUE"})})
|
||||
public class ResourceIndexedSearchParamToken extends BaseResourceIndexedSearchParam {
|
||||
|
||||
private static final long serialVersionUID = 1L;
|
||||
|
|
|
|||
|
|
@ -15,6 +15,8 @@ import org.apache.commons.lang3.Validate;
|
|||
|
||||
@Entity
|
||||
@Table(name = "HFJ_RES_LINK")
|
||||
@org.hibernate.annotations.Table(appliesTo="HFJ_RES_LINK",indexes= {
|
||||
@org.hibernate.annotations.Index(name="IDX_RL_TPATHRES", columnNames= {"SRC_PATH","TARGET_RESOURCE_ID"})})
|
||||
public class ResourceLink implements Serializable {
|
||||
|
||||
private static final long serialVersionUID = 1L;
|
||||
|
|
|
|||
Loading…
Reference in New Issue