issue-2901 some refactoring
This commit is contained in:
leif stawnyczy
parent
b51c722755
commit
646592b1b7
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@ -384,7 +384,8 @@ public abstract class BaseTransactionProcessor {
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myHapiTransactionService = theHapiTransactionService;
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}
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private IBaseBundle processTransaction(final RequestDetails theRequestDetails, final IBaseBundle theRequest, final String theActionName, boolean theNestedMode) {
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private IBaseBundle processTransaction(final RequestDetails theRequestDetails, final IBaseBundle theRequest,
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final String theActionName, boolean theNestedMode) {
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validateDependencies();
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String transactionType = myVersionAdapter.getBundleType(theRequest);
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@ -440,10 +441,11 @@ public abstract class BaseTransactionProcessor {
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List<IBase> getEntries = new ArrayList<>();
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final IdentityHashMap<IBase, Integer> originalRequestOrder = new IdentityHashMap<>();
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for (int i = 0; i < requestEntries.size(); i++) {
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originalRequestOrder.put(requestEntries.get(i), i);
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IBase requestEntry = requestEntries.get(i);
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originalRequestOrder.put(requestEntry, i);
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myVersionAdapter.addEntry(response);
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if (myVersionAdapter.getEntryRequestVerb(myContext, requestEntries.get(i)).equals("GET")) {
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getEntries.add(requestEntries.get(i));
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if (myVersionAdapter.getEntryRequestVerb(myContext, requestEntry).equals("GET")) {
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getEntries.add(requestEntry);
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}
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}
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@ -462,73 +464,17 @@ public abstract class BaseTransactionProcessor {
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}
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entries.sort(new TransactionSorter(placeholderIds));
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doTransactionWriteOperations(theRequestDetails, theActionName, transactionDetails, transactionStopWatch, response, originalRequestOrder, entries);
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// perform all writes
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doTransactionWriteOperations(theRequestDetails, theActionName,
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transactionDetails, transactionStopWatch,
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response, originalRequestOrder, entries);
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/*
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* Loop through the request and process any entries of type GET
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*/
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if (getEntries.size() > 0) {
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transactionStopWatch.startTask("Process " + getEntries.size() + " GET entries");
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}
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for (IBase nextReqEntry : getEntries) {
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if (theNestedMode) {
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throw new InvalidRequestException("Can not invoke read operation on nested transaction");
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}
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if (!(theRequestDetails instanceof ServletRequestDetails)) {
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throw new MethodNotAllowedException("Can not call transaction GET methods from this context");
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}
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ServletRequestDetails srd = (ServletRequestDetails) theRequestDetails;
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Integer originalOrder = originalRequestOrder.get(nextReqEntry);
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IBase nextRespEntry = (IBase) myVersionAdapter.getEntries(response).get(originalOrder);
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ArrayListMultimap<String, String> paramValues = ArrayListMultimap.create();
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String transactionUrl = extractTransactionUrlOrThrowException(nextReqEntry, "GET");
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ServletSubRequestDetails requestDetails = ServletRequestUtil.getServletSubRequestDetails(srd, transactionUrl, paramValues);
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String url = requestDetails.getRequestPath();
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BaseMethodBinding<?> method = srd.getServer().determineResourceMethod(requestDetails, url);
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if (method == null) {
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throw new IllegalArgumentException("Unable to handle GET " + url);
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}
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if (isNotBlank(myVersionAdapter.getEntryRequestIfMatch(nextReqEntry))) {
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requestDetails.addHeader(Constants.HEADER_IF_MATCH, myVersionAdapter.getEntryRequestIfMatch(nextReqEntry));
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}
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if (isNotBlank(myVersionAdapter.getEntryRequestIfNoneExist(nextReqEntry))) {
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requestDetails.addHeader(Constants.HEADER_IF_NONE_EXIST, myVersionAdapter.getEntryRequestIfNoneExist(nextReqEntry));
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}
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if (isNotBlank(myVersionAdapter.getEntryRequestIfNoneMatch(nextReqEntry))) {
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requestDetails.addHeader(Constants.HEADER_IF_NONE_MATCH, myVersionAdapter.getEntryRequestIfNoneMatch(nextReqEntry));
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}
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Validate.isTrue(method instanceof BaseResourceReturningMethodBinding, "Unable to handle GET {}", url);
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try {
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BaseResourceReturningMethodBinding methodBinding = (BaseResourceReturningMethodBinding) method;
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requestDetails.setRestOperationType(methodBinding.getRestOperationType());
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IBaseResource resource = methodBinding.doInvokeServer(srd.getServer(), requestDetails);
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if (paramValues.containsKey(Constants.PARAM_SUMMARY) || paramValues.containsKey(Constants.PARAM_CONTENT)) {
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resource = filterNestedBundle(requestDetails, resource);
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}
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myVersionAdapter.setResource(nextRespEntry, resource);
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myVersionAdapter.setResponseStatus(nextRespEntry, toStatusString(Constants.STATUS_HTTP_200_OK));
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} catch (NotModifiedException e) {
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myVersionAdapter.setResponseStatus(nextRespEntry, toStatusString(Constants.STATUS_HTTP_304_NOT_MODIFIED));
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} catch (BaseServerResponseException e) {
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ourLog.info("Failure processing transaction GET {}: {}", url, e.toString());
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myVersionAdapter.setResponseStatus(nextRespEntry, toStatusString(e.getStatusCode()));
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populateEntryWithOperationOutcome(e, nextRespEntry);
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}
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}
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transactionStopWatch.endCurrentTask();
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// perform all gets
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// (we do these last so that the gets happen on the final state of the DB;
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// see above note)
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doTransactionReadOperations(theRequestDetails, response,
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getEntries, originalRequestOrder,
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transactionStopWatch, theNestedMode);
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// Interceptor broadcast: JPA_PERFTRACE_INFO
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if (CompositeInterceptorBroadcaster.hasHooks(Pointcut.JPA_PERFTRACE_INFO, myInterceptorBroadcaster, theRequestDetails)) {
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@ -545,6 +491,74 @@ public abstract class BaseTransactionProcessor {
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return response;
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}
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private void doTransactionReadOperations(final RequestDetails theRequestDetails, IBaseBundle theResponse,
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List<IBase> theGetEntries, IdentityHashMap<IBase, Integer> theOriginalRequestOrder,
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StopWatch theTransactionStopWatch, boolean theNestedMode) {
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if (theGetEntries.size() > 0) {
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theTransactionStopWatch.startTask("Process " + theGetEntries.size() + " GET entries");
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/*
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* Loop through the request and process any entries of type GET
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*/
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for (IBase nextReqEntry : theGetEntries) {
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if (theNestedMode) {
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throw new InvalidRequestException("Can not invoke read operation on nested transaction");
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}
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if (!(theRequestDetails instanceof ServletRequestDetails)) {
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throw new MethodNotAllowedException("Can not call transaction GET methods from this context");
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}
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ServletRequestDetails srd = (ServletRequestDetails) theRequestDetails;
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Integer originalOrder = theOriginalRequestOrder.get(nextReqEntry);
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IBase nextRespEntry = (IBase) myVersionAdapter.getEntries(theResponse).get(originalOrder);
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ArrayListMultimap<String, String> paramValues = ArrayListMultimap.create();
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String transactionUrl = extractTransactionUrlOrThrowException(nextReqEntry, "GET");
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ServletSubRequestDetails requestDetails = ServletRequestUtil.getServletSubRequestDetails(srd, transactionUrl, paramValues);
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String url = requestDetails.getRequestPath();
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BaseMethodBinding<?> method = srd.getServer().determineResourceMethod(requestDetails, url);
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if (method == null) {
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throw new IllegalArgumentException("Unable to handle GET " + url);
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}
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if (isNotBlank(myVersionAdapter.getEntryRequestIfMatch(nextReqEntry))) {
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requestDetails.addHeader(Constants.HEADER_IF_MATCH, myVersionAdapter.getEntryRequestIfMatch(nextReqEntry));
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}
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if (isNotBlank(myVersionAdapter.getEntryRequestIfNoneExist(nextReqEntry))) {
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requestDetails.addHeader(Constants.HEADER_IF_NONE_EXIST, myVersionAdapter.getEntryRequestIfNoneExist(nextReqEntry));
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}
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if (isNotBlank(myVersionAdapter.getEntryRequestIfNoneMatch(nextReqEntry))) {
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requestDetails.addHeader(Constants.HEADER_IF_NONE_MATCH, myVersionAdapter.getEntryRequestIfNoneMatch(nextReqEntry));
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}
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Validate.isTrue(method instanceof BaseResourceReturningMethodBinding, "Unable to handle GET {}", url);
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try {
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BaseResourceReturningMethodBinding methodBinding = (BaseResourceReturningMethodBinding) method;
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requestDetails.setRestOperationType(methodBinding.getRestOperationType());
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IBaseResource resource = methodBinding.doInvokeServer(srd.getServer(), requestDetails);
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if (paramValues.containsKey(Constants.PARAM_SUMMARY) || paramValues.containsKey(Constants.PARAM_CONTENT)) {
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resource = filterNestedBundle(requestDetails, resource);
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}
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myVersionAdapter.setResource(nextRespEntry, resource);
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myVersionAdapter.setResponseStatus(nextRespEntry, toStatusString(Constants.STATUS_HTTP_200_OK));
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} catch (NotModifiedException e) {
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myVersionAdapter.setResponseStatus(nextRespEntry, toStatusString(Constants.STATUS_HTTP_304_NOT_MODIFIED));
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} catch (BaseServerResponseException e) {
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ourLog.info("Failure processing transaction GET {}: {}", url, e.toString());
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myVersionAdapter.setResponseStatus(nextRespEntry, toStatusString(e.getStatusCode()));
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populateEntryWithOperationOutcome(e, nextRespEntry);
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}
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}
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theTransactionStopWatch.endCurrentTask();
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}
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}
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/**
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* All of the write operations in the transaction (PUT, POST, etc.. basically anything
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* except GET) are performed in their own database transaction before we do the reads.
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@ -554,7 +568,10 @@ public abstract class BaseTransactionProcessor {
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* heavy load with lots of concurrent transactions using all available
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* database connections.
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*/
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private void doTransactionWriteOperations(RequestDetails theRequestDetails, String theActionName, TransactionDetails theTransactionDetails, StopWatch theTransactionStopWatch, IBaseBundle theResponse, IdentityHashMap<IBase, Integer> theOriginalRequestOrder, List<IBase> theEntries) {
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private void doTransactionWriteOperations(RequestDetails theRequestDetails, String theActionName,
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TransactionDetails theTransactionDetails, StopWatch theTransactionStopWatch,
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IBaseBundle theResponse, IdentityHashMap<IBase, Integer> theOriginalRequestOrder,
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List<IBase> theEntries) {
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TransactionWriteOperationsDetails writeOperationsDetails = null;
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if (CompositeInterceptorBroadcaster.hasHooks(Pointcut.STORAGE_TRANSACTION_WRITE_OPERATIONS_PRE, myInterceptorBroadcaster, theRequestDetails) ||
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CompositeInterceptorBroadcaster.hasHooks(Pointcut.STORAGE_TRANSACTION_WRITE_OPERATIONS_POST, myInterceptorBroadcaster, theRequestDetails)) {
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@ -583,14 +600,18 @@ public abstract class BaseTransactionProcessor {
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.add(TransactionDetails.class, theTransactionDetails)
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.add(TransactionWriteOperationsDetails.class, writeOperationsDetails);
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CompositeInterceptorBroadcaster.doCallHooks(myInterceptorBroadcaster, theRequestDetails, Pointcut.STORAGE_TRANSACTION_WRITE_OPERATIONS_PRE, params);
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}
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TransactionCallback<Map<IBase, IIdType>> txCallback = status -> {
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final Set<IIdType> allIds = new LinkedHashSet<>();
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final Map<IIdType, IIdType> idSubstitutions = new HashMap<>();
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final Map<IIdType, DaoMethodOutcome> idToPersistedOutcome = new HashMap<>();
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Map<IBase, IIdType> retVal = doTransactionWriteOperations(theRequestDetails, theActionName, theTransactionDetails, allIds, idSubstitutions, idToPersistedOutcome, theResponse, theOriginalRequestOrder, theEntries, theTransactionStopWatch);
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Map<IBase, IIdType> retVal = doTransactionWriteOperations(theRequestDetails, theActionName,
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theTransactionDetails, allIds,
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idSubstitutions, idToPersistedOutcome,
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theResponse, theOriginalRequestOrder,
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theEntries, theTransactionStopWatch);
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theTransactionStopWatch.startTask("Commit writes to database");
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return retVal;
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@ -721,7 +742,7 @@ public abstract class BaseTransactionProcessor {
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}
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/**
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* Retrieves teh next resource id (IIdType) from the base resource and next request entry.
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* Retrieves the next resource id (IIdType) from the base resource and next request entry.
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* @param theBaseResource - base resource
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* @param theNextReqEntry - next request entry
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* @param theAllIds - set of all IIdType values
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@ -1161,19 +1182,11 @@ public abstract class BaseTransactionProcessor {
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nextOutcome, nextResource,
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referencesToAutoVersion); // this is empty
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} else {
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// we have autoversioned things to defer until later
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if (deferredIndexesForAutoVersioning == null) {
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deferredIndexesForAutoVersioning = new IdentityHashMap<>();
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}
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deferredIndexesForAutoVersioning.put(nextOutcome, referencesToAutoVersion);
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// TODO - add the references to the
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// idsToPersistedOutcomes
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// for (IBaseReference autoVersion: referencesToAutoVersion) {
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// IBaseResource resource = myVersionAdapter.getResource(autoVersion);
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// IFhirResourceDao dao = getDaoOrThrowException(resource.getClass());
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//
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// }
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// theIdToPersistedOutcome.put()
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}
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}
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@ -1183,6 +1196,15 @@ public abstract class BaseTransactionProcessor {
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DaoMethodOutcome nextOutcome = nextEntry.getKey();
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Set<IBaseReference> referencesToAutoVersion = nextEntry.getValue();
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IBaseResource nextResource = nextOutcome.getResource();
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//TODO - should we add the autoversioned resources to our idtoPersistedoutcomes here?
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// for (IBaseReference autoVersionRef : referencesToAutoVersion) {
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// IBaseResource baseResource = myVersionAdapter.getResource(autoVersionRef);
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// IFhirResourceDao dao = getDaoOrThrowException(baseResource.getClass());
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//
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// theIdToPersistedOutcome.put(baseResource.getIdElement(), );
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// }
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resolveReferencesThenSaveAndIndexResource(theRequest, theTransactionDetails,
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theIdSubstitutions, theIdToPersistedOutcome,
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entriesToProcess, nonUpdatedEntities,
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@ -1,83 +0,0 @@
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package ca.uhn.fhir.jpa.dao.r4;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.context.ParserOptions;
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import ca.uhn.fhir.jpa.api.config.DaoConfig;
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import ca.uhn.fhir.jpa.api.model.DaoMethodOutcome;
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import ca.uhn.fhir.jpa.model.entity.ModelConfig;
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import ca.uhn.fhir.jpa.partition.SystemRequestDetails;
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import ca.uhn.fhir.jpa.provider.r4.ResourceProviderR4Test;
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import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
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import ca.uhn.fhir.rest.api.server.IBundleProvider;
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import ca.uhn.fhir.rest.param.TokenParam;
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import ca.uhn.fhir.util.BundleBuilder;
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import org.hl7.fhir.instance.model.api.IBaseResource;
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import org.hl7.fhir.instance.model.api.IIdType;
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import org.hl7.fhir.r4.model.Bundle;
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import org.hl7.fhir.r4.model.Condition;
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import org.hl7.fhir.r4.model.Encounter;
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import org.hl7.fhir.r4.model.ExplanationOfBenefit;
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import org.hl7.fhir.r4.model.IdType;
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import org.hl7.fhir.r4.model.Observation;
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import org.hl7.fhir.r4.model.Organization;
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import org.hl7.fhir.r4.model.Patient;
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import org.hl7.fhir.r4.model.Reference;
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import org.hl7.fhir.r4.model.Task;
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import org.junit.jupiter.api.AfterEach;
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import org.junit.jupiter.api.DisplayName;
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import org.junit.jupiter.api.Test;
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import java.io.InputStreamReader;
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import java.util.Arrays;
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import java.util.Date;
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import java.util.HashSet;
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import java.util.List;
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import java.util.concurrent.atomic.AtomicInteger;
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import java.util.function.Supplier;
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import java.util.stream.Collectors;
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import static org.hamcrest.CoreMatchers.is;
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import static org.hamcrest.MatcherAssert.assertThat;
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import static org.hamcrest.Matchers.equalTo;
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import static org.hamcrest.Matchers.matchesPattern;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import static org.junit.jupiter.api.Assertions.assertTrue;
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public class AAAATests extends BaseJpaR4Test {
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDaoR4VersionedReferenceTest.class);
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@AfterEach
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public void afterEach() {
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myFhirCtx.getParserOptions().setStripVersionsFromReferences(true);
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myFhirCtx.getParserOptions().getDontStripVersionsFromReferencesAtPaths().clear();
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myDaoConfig.setDeleteEnabled(new DaoConfig().isDeleteEnabled());
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myModelConfig.setRespectVersionsForSearchIncludes(new ModelConfig().isRespectVersionsForSearchIncludes());
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myModelConfig.setAutoVersionReferenceAtPaths(new ModelConfig().getAutoVersionReferenceAtPaths());
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}
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@Test
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@DisplayName("GH-2901 Test no NPE is thrown on autoversioned references")
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public void testNoNpeMinimal() {
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myDaoConfig.setAutoCreatePlaceholderReferenceTargets(false);
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myModelConfig.setAutoVersionReferenceAtPaths("Observation.subject");
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// ParserOptions options = new ParserOptions();
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// options.setDontStripVersionsFromReferencesAtPaths("Observation.subject");
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// myFhirCtx.setParserOptions(options);
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Patient patient = new Patient();
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patient.setId("Patient/RED");
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myPatientDao.update(patient);
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Observation obs = new Observation();
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obs.setId("Observation/DEF");
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obs.setSubject(new Reference("Patient/RED"));
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BundleBuilder builder = new BundleBuilder(myFhirCtx);
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builder.addTransactionUpdateEntry(obs);
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mySystemDao.transaction(new SystemRequestDetails(), (Bundle) builder.getBundle());
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}
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}
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@ -303,7 +303,6 @@ public class FhirResourceDaoR4VersionedReferenceTest extends BaseJpaR4Test {
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myFhirCtx.getParserOptions().setStripVersionsFromReferences(false);
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myModelConfig.setAutoVersionReferenceAtPaths("Observation.subject");
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BundleBuilder builder = new BundleBuilder(myFhirCtx);
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Patient patient = new Patient();
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@ -334,7 +333,6 @@ public class FhirResourceDaoR4VersionedReferenceTest extends BaseJpaR4Test {
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observation = myObservationDao.read(observationId);
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assertEquals(patientId.getValue(), observation.getSubject().getReference());
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assertEquals(encounterId.toVersionless().getValue(), observation.getEncounter().getReference());
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}
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@Test
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@ -397,7 +395,6 @@ public class FhirResourceDaoR4VersionedReferenceTest extends BaseJpaR4Test {
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assertEquals(patientId.getValue(), observation.getSubject().getReference());
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assertEquals("2", observation.getSubject().getReferenceElement().getVersionIdPart());
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assertEquals(encounterId.toVersionless().getValue(), observation.getEncounter().getReference());
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}
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@ -417,7 +414,6 @@ public class FhirResourceDaoR4VersionedReferenceTest extends BaseJpaR4Test {
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// Update patient to make a second version
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patient.setActive(false);
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myPatientDao.update(patient);
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}
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BundleBuilder builder = new BundleBuilder(myFhirCtx);
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@ -466,7 +462,6 @@ public class FhirResourceDaoR4VersionedReferenceTest extends BaseJpaR4Test {
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// Update patient to make a second version
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patient.setActive(false);
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myPatientDao.update(patient);
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}
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BundleBuilder builder = new BundleBuilder(myFhirCtx);
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@ -499,10 +494,8 @@ public class FhirResourceDaoR4VersionedReferenceTest extends BaseJpaR4Test {
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// Read back and verify that reference is now versioned
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observation = myObservationDao.read(observationId);
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assertEquals(patientId.getValue(), observation.getSubject().getReference());
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}
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@Test
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public void testSearchAndIncludeVersionedReference_Asynchronous() {
|
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myFhirCtx.getParserOptions().setStripVersionsFromReferences(false);
|
||||
|
|
|
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Reference in New Issue