From 64e120cef869ed10d8695fbad7649631d60add7b Mon Sep 17 00:00:00 2001 From: James Agnew Date: Mon, 30 Oct 2017 16:19:09 -0400 Subject: [PATCH] Custom structs in progress --- .../java/ca/uhn/fhir/util/FhirTerser.java | 58 +- .../fhir/jpa/dao/BaseHapiFhirResourceDao.java | 30 +- .../jpa/dao/BaseSearchParamExtractor.java | 14 +- .../FhirResourceDaoSearchParameterDstu2.java | 66 +- .../jpa/dao/SearchParamExtractorDstu2.java | 9 + .../jpa/dao/SearchParamRegistryDstu2.java | 229 ++++- .../FhirResourceDaoSearchParameterDstu3.java | 89 +- .../r4/FhirResourceDaoSearchParameterR4.java | 95 +- ...SubscriptionDeliveringEmailSubscriber.java | 15 +- .../fhir/jpa/dao/dstu2/BaseJpaDstu2Test.java | 5 + ...ceDaoDstu2SearchCustomSearchParamTest.java | 867 ++++++++++++++++++ ...ceDaoDstu3SearchCustomSearchParamTest.java | 2 +- ...ourceDaoR4SearchCustomSearchParamTest.java | 2 +- .../email/EmailSubscriptionDstu3Test.java | 47 + 14 files changed, 1369 insertions(+), 159 deletions(-) create mode 100644 hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/FhirResourceDaoDstu2SearchCustomSearchParamTest.java diff --git a/hapi-fhir-base/src/main/java/ca/uhn/fhir/util/FhirTerser.java b/hapi-fhir-base/src/main/java/ca/uhn/fhir/util/FhirTerser.java index ff01e80d724..ff7d876a6ac 100644 --- a/hapi-fhir-base/src/main/java/ca/uhn/fhir/util/FhirTerser.java +++ b/hapi-fhir-base/src/main/java/ca/uhn/fhir/util/FhirTerser.java @@ -22,6 +22,7 @@ import static org.apache.commons.lang3.StringUtils.defaultString; * #L% */ import java.util.*; +import java.util.function.Predicate; import org.apache.commons.lang3.Validate; import org.hl7.fhir.instance.model.api.*; @@ -212,10 +213,43 @@ public class FhirTerser { @SuppressWarnings("unchecked") private List getValues(BaseRuntimeElementCompositeDefinition theCurrentDef, Object theCurrentObj, List theSubList, Class theWantedClass) { String name = theSubList.get(0); - + List retVal = new ArrayList<>(); + + if (name.startsWith("extension('")) { + String extensionUrl = name.substring("extension('".length()); + int endIndex = extensionUrl.indexOf('\''); + if (endIndex != -1) { + extensionUrl = extensionUrl.substring(0, endIndex); + } + + List extensions= Collections.emptyList(); + if (theCurrentObj instanceof ISupportsUndeclaredExtensions) { + extensions = ((ISupportsUndeclaredExtensions) theCurrentObj).getUndeclaredExtensionsByUrl(extensionUrl); + } else if (theCurrentObj instanceof IBaseExtension) { + extensions = ((IBaseExtension)theCurrentObj).getExtension(); + } + + for (ExtensionDt next : extensions) { + if (theWantedClass.isAssignableFrom(next.getClass())) { + retVal.add((T) next); + } + } + + if (theSubList.size() > 1) { + List values = retVal; + retVal = new ArrayList<>(); + for (T nextElement : values) { + BaseRuntimeElementCompositeDefinition nextChildDef = (BaseRuntimeElementCompositeDefinition) myContext.getElementDefinition((Class) nextElement.getClass()); + List foundValues = getValues(nextChildDef, nextElement, theSubList.subList(1, theSubList.size()), theWantedClass); + retVal.addAll(foundValues); + } + } + + return retVal; + } + BaseRuntimeChildDefinition nextDef = theCurrentDef.getChildByNameOrThrowDataFormatException(name); List values = nextDef.getAccessor().getValues(theCurrentObj); - List retVal = new ArrayList(); if (theSubList.size() == 1) { if (nextDef instanceof RuntimeChildChoiceDefinition) { @@ -268,7 +302,25 @@ public class FhirTerser { } private List parsePath(BaseRuntimeElementCompositeDefinition theElementDef, String thePath) { - List parts = Arrays.asList(thePath.split("\\.")); + List parts = new ArrayList<>(); + + int currentStart = 0; + boolean inSingleQuote = false; + for (int i = 0; i < thePath.length(); i++) { + switch (thePath.charAt(i)) { + case '\'': + inSingleQuote = !inSingleQuote; + break; + case '.': + if (!inSingleQuote) { + parts.add(thePath.substring(currentStart, i)); + currentStart = i + 1; + } + break; + } + } + + parts.add(thePath.substring(currentStart)); if (theElementDef instanceof RuntimeResourceDefinition) { if (parts.size() > 0 && parts.get(0).equals(theElementDef.getName())) { diff --git a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirResourceDao.java b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirResourceDao.java index 1e238dce835..0d947fb7866 100644 --- a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirResourceDao.java +++ b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirResourceDao.java @@ -56,8 +56,12 @@ import org.hl7.fhir.instance.model.api.*; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Required; import org.springframework.transaction.PlatformTransactionManager; +import org.springframework.transaction.TransactionDefinition; +import org.springframework.transaction.TransactionStatus; import org.springframework.transaction.annotation.Propagation; import org.springframework.transaction.annotation.Transactional; +import org.springframework.transaction.support.TransactionCallback; +import org.springframework.transaction.support.TransactionTemplate; import javax.annotation.PostConstruct; import javax.persistence.NoResultException; @@ -89,6 +93,8 @@ public abstract class BaseHapiFhirResourceDao extends B private Class myResourceType; private String mySecondaryPrimaryKeyParamName; + @Autowired + private ISearchParamRegistry mySearchParamRegistry; @Override public void addTag(IIdType theId, TagTypeEnum theTagType, String theScheme, String theTerm, String theLabel) { @@ -371,8 +377,8 @@ public abstract class BaseHapiFhirResourceDao extends B updateEntity(theResource, entity, null, thePerformIndexing, thePerformIndexing, theUpdateTime, false, thePerformIndexing); theResource.setId(entity.getIdDt()); - - /* + + /* * If we aren't indexing (meaning we're probably executing a sub-operation within a transaction), * we'll manually increase the version. This is important because we want the updated version number * to be reflected in the resource shared with interceptors @@ -553,6 +559,26 @@ public abstract class BaseHapiFhirResourceDao extends B return false; } + protected void markResourcesMatchingExpressionAsNeedingReindexing(String theExpression) { + if (isNotBlank(theExpression)) { + final String resourceType = theExpression.substring(0, theExpression.indexOf('.')); + ourLog.info("Marking all resources of type {} for reindexing due to updated search parameter with path: {}", resourceType, theExpression); + + TransactionTemplate txTemplate = new TransactionTemplate(myPlatformTransactionManager); + txTemplate.setPropagationBehavior(TransactionDefinition.PROPAGATION_REQUIRED); + int updatedCount = txTemplate.execute(new TransactionCallback() { + @Override + public Integer doInTransaction(TransactionStatus theStatus) { + return myResourceTableDao.markResourcesOfTypeAsRequiringReindexing(resourceType); + } + }); + + ourLog.info("Marked {} resources for reindexing", updatedCount); + } + + mySearchParamRegistry.forceRefresh(); + } + @Override public MT metaAddOperation(IIdType theResourceId, MT theMetaAdd, RequestDetails theRequestDetails) { // Notify interceptors diff --git a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseSearchParamExtractor.java b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseSearchParamExtractor.java index bf4debe18ea..9f9449d5513 100644 --- a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseSearchParamExtractor.java +++ b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseSearchParamExtractor.java @@ -27,6 +27,8 @@ import java.util.List; import java.util.regex.Pattern; import org.apache.commons.lang3.ObjectUtils; +import org.hl7.fhir.instance.model.api.IBaseDatatype; +import org.hl7.fhir.instance.model.api.IBaseExtension; import org.hl7.fhir.instance.model.api.IBaseResource; import org.springframework.beans.factory.annotation.Autowired; @@ -80,7 +82,17 @@ public abstract class BaseSearchParamExtractor implements ISearchParamExtractor for (String nextPath : nextPathsSplit) { String nextPathTrimmed = nextPath.trim(); try { - values.addAll(t.getValues(theResource, nextPathTrimmed)); + List allValues = t.getValues(theResource, nextPathTrimmed); + for (Object next : allValues) { + if (next instanceof IBaseExtension) { + IBaseDatatype value = ((IBaseExtension) next).getValue(); + if (value != null) { + values.add(value); + } + } else { + values.add(next); + } + } } catch (Exception e) { RuntimeResourceDefinition def = myContext.getResourceDefinition(theResource); ourLog.warn("Failed to index values from path[{}] in resource type[{}]: {}", new Object[] { nextPathTrimmed, def.getName(), e.toString(), e } ); diff --git a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoSearchParameterDstu2.java b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoSearchParameterDstu2.java index 658bb28ef74..1915dd1694b 100644 --- a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoSearchParameterDstu2.java +++ b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoSearchParameterDstu2.java @@ -20,19 +20,34 @@ package ca.uhn.fhir.jpa.dao; * #L% */ +import ca.uhn.fhir.context.FhirContext; +import ca.uhn.fhir.jpa.dao.r4.FhirResourceDaoSearchParameterR4; +import ca.uhn.fhir.jpa.entity.ResourceTable; +import ca.uhn.fhir.model.dstu2.composite.MetaDt; +import ca.uhn.fhir.model.dstu2.resource.Bundle; +import ca.uhn.fhir.model.dstu2.resource.SearchParameter; +import ca.uhn.fhir.model.dstu2.valueset.ResourceTypeEnum; +import ca.uhn.fhir.model.dstu2.valueset.SearchParamTypeEnum; +import ca.uhn.fhir.model.primitive.BoundCodeDt; +import ca.uhn.fhir.model.primitive.CodeDt; import org.apache.commons.lang3.time.DateUtils; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.scheduling.annotation.Scheduled; -import ca.uhn.fhir.model.dstu2.composite.MetaDt; -import ca.uhn.fhir.model.dstu2.resource.Bundle; -import ca.uhn.fhir.model.dstu2.resource.SearchParameter; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; -public class FhirResourceDaoSearchParameterDstu2 extends FhirResourceDaoDstu2implements IFhirResourceDaoSearchParameter { +public class FhirResourceDaoSearchParameterDstu2 extends FhirResourceDaoDstu2 implements IFhirResourceDaoSearchParameter { @Autowired private IFhirSystemDao mySystemDao; - + + protected void markAffectedResources(SearchParameter theResource) { + markResourcesMatchingExpressionAsNeedingReindexing(theResource != null ? theResource.getXpath() : null); + } + /** * This method is called once per minute to perform any required re-indexing. During most passes this will * just check and find that there are no resources requiring re-indexing. In that case the method just returns @@ -40,7 +55,7 @@ public class FhirResourceDaoSearchParameterDstu2 extends FhirResourceDaoDstu2 status = theResource.getStatusElement().getValueAsEnum(); + List> base = Collections.emptyList(); + if (theResource.getBase() != null) { + base = Arrays.asList(theResource.getBaseElement()); + } + String expression = theResource.getXpath(); + FhirContext context = getContext(); + SearchParamTypeEnum type = theResource.getTypeElement().getValueAsEnum(); + + FhirResourceDaoSearchParameterR4.validateSearchParam(type, status, base, expression, context); + } + + } diff --git a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchParamExtractorDstu2.java b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchParamExtractorDstu2.java index 4b354cad14b..f7fccee9e37 100644 --- a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchParamExtractorDstu2.java +++ b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchParamExtractorDstu2.java @@ -227,6 +227,15 @@ public class SearchParamExtractorDstu2 extends BaseSearchParamExtractor implemen ResourceIndexedSearchParamNumber nextEntity = new ResourceIndexedSearchParamNumber(resourceName, new BigDecimal(nextValue.getValue())); nextEntity.setResource(theEntity); retVal.add(nextEntity); + } else if (nextObject instanceof DecimalDt) { + DecimalDt nextValue = (DecimalDt) nextObject; + if (nextValue.getValue() == null) { + continue; + } + + ResourceIndexedSearchParamNumber nextEntity = new ResourceIndexedSearchParamNumber(resourceName, nextValue.getValue()); + nextEntity.setResource(theEntity); + retVal.add(nextEntity); } else { if (!multiType) { throw new ConfigurationException("Search param " + resourceName + " is of unexpected datatype: " + nextObject.getClass()); diff --git a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchParamRegistryDstu2.java b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchParamRegistryDstu2.java index 8eb845e8475..cd54c40e78c 100644 --- a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchParamRegistryDstu2.java +++ b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchParamRegistryDstu2.java @@ -20,9 +20,234 @@ package ca.uhn.fhir.jpa.dao; * #L% */ +import ca.uhn.fhir.context.RuntimeSearchParam; +import ca.uhn.fhir.jpa.dao.dstu3.SearchParamRegistryDstu3; +import ca.uhn.fhir.jpa.search.JpaRuntimeSearchParam; +import ca.uhn.fhir.jpa.util.JpaConstants; +import ca.uhn.fhir.jpa.util.StopWatch; +import ca.uhn.fhir.model.api.ExtensionDt; +import ca.uhn.fhir.model.dstu2.resource.SearchParameter; +import ca.uhn.fhir.model.primitive.CodeDt; +import ca.uhn.fhir.rest.api.RestSearchParameterTypeEnum; +import ca.uhn.fhir.rest.api.server.IBundleProvider; +import org.apache.commons.lang3.time.DateUtils; +import org.hl7.fhir.instance.model.api.IBaseResource; +import org.hl7.fhir.instance.model.api.IIdType; +import org.hl7.fhir.instance.model.api.IPrimitiveType; +import org.springframework.beans.factory.annotation.Autowired; + +import java.util.*; + +import static org.apache.commons.lang3.StringUtils.isBlank; +import static org.apache.commons.lang3.StringUtils.isNotBlank; + public class SearchParamRegistryDstu2 extends BaseSearchParamRegistry { + private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(SearchParamRegistryDstu3.class); + public static final int MAX_MANAGED_PARAM_COUNT = 10000; + + private volatile Map> myActiveSearchParams; + + @Autowired + private DaoConfig myDaoConfig; + + private volatile long myLastRefresh; + + @Autowired + private IFhirResourceDao mySpDao; + @Override - protected void refreshCacheIfNecessary() { - // nothing yet + public void forceRefresh() { + synchronized (this) { + myLastRefresh = 0; + } } + + @Override + public Map> getActiveSearchParams() { + refreshCacheIfNecessary(); + return myActiveSearchParams; + } + + @Override + public Map getActiveSearchParams(String theResourceName) { + refreshCacheIfNecessary(); + return myActiveSearchParams.get(theResourceName); + } + + private Map getSearchParamMap(Map> searchParams, String theResourceName) { + Map retVal = searchParams.get(theResourceName); + if (retVal == null) { + retVal = new HashMap<>(); + searchParams.put(theResourceName, retVal); + } + return retVal; + } + + protected void refreshCacheIfNecessary() { + long refreshInterval = 60 * DateUtils.MILLIS_PER_MINUTE; + if (System.currentTimeMillis() - refreshInterval > myLastRefresh) { + synchronized (this) { + if (System.currentTimeMillis() - refreshInterval > myLastRefresh) { + StopWatch sw = new StopWatch(); + + Map> searchParams = new HashMap<>(); + for (Map.Entry> nextBuiltInEntry : getBuiltInSearchParams().entrySet()) { + for (RuntimeSearchParam nextParam : nextBuiltInEntry.getValue().values()) { + String nextResourceName = nextBuiltInEntry.getKey(); + getSearchParamMap(searchParams, nextResourceName).put(nextParam.getName(), nextParam); + } + } + + SearchParameterMap params = new SearchParameterMap(); + params.setLoadSynchronousUpTo(MAX_MANAGED_PARAM_COUNT); + + IBundleProvider allSearchParamsBp = mySpDao.search(params); + int size = allSearchParamsBp.size(); + + // Just in case.. + if (size > MAX_MANAGED_PARAM_COUNT) { + ourLog.warn("Unable to support >" + MAX_MANAGED_PARAM_COUNT + " search params!"); + size = MAX_MANAGED_PARAM_COUNT; + } + + List allSearchParams = allSearchParamsBp.getResources(0, size); + for (IBaseResource nextResource : allSearchParams) { + SearchParameter nextSp = (SearchParameter) nextResource; + JpaRuntimeSearchParam runtimeSp = toRuntimeSp(nextSp); + if (runtimeSp == null) { + continue; + } + + CodeDt nextBaseName = nextSp.getBaseElement(); + String resourceType = nextBaseName.getValue(); + if (isBlank(resourceType)) { + continue; + } + + Map searchParamMap = getSearchParamMap(searchParams, resourceType); + String name = runtimeSp.getName(); + if (myDaoConfig.isDefaultSearchParamsCanBeOverridden() || !searchParamMap.containsKey(name)) { + searchParamMap.put(name, runtimeSp); + } + + } + + Map> activeSearchParams = new HashMap<>(); + for (Map.Entry> nextEntry : searchParams.entrySet()) { + for (RuntimeSearchParam nextSp : nextEntry.getValue().values()) { + String nextName = nextSp.getName(); + if (nextSp.getStatus() != RuntimeSearchParam.RuntimeSearchParamStatusEnum.ACTIVE) { + nextSp = null; + } + + if (!activeSearchParams.containsKey(nextEntry.getKey())) { + activeSearchParams.put(nextEntry.getKey(), new HashMap()); + } + if (activeSearchParams.containsKey(nextEntry.getKey())) { + ourLog.debug("Replacing existing/built in search param {}:{} with new one", nextEntry.getKey(), nextName); + } + + if (nextSp != null) { + activeSearchParams.get(nextEntry.getKey()).put(nextName, nextSp); + } else { + activeSearchParams.get(nextEntry.getKey()).remove(nextName); + } + } + } + + myActiveSearchParams = activeSearchParams; + + super.populateActiveSearchParams(activeSearchParams); + + myLastRefresh = System.currentTimeMillis(); + ourLog.info("Refreshed search parameter cache in {}ms", sw.getMillis()); + } + } + } + } + + private JpaRuntimeSearchParam toRuntimeSp(SearchParameter theNextSp) { + String name = theNextSp.getCode(); + String description = theNextSp.getDescription(); + String path = theNextSp.getXpath(); + RestSearchParameterTypeEnum paramType = null; + RuntimeSearchParam.RuntimeSearchParamStatusEnum status = null; + switch (theNextSp.getTypeElement().getValueAsEnum()) { + case COMPOSITE: + paramType = RestSearchParameterTypeEnum.COMPOSITE; + break; + case DATE_DATETIME: + paramType = RestSearchParameterTypeEnum.DATE; + break; + case NUMBER: + paramType = RestSearchParameterTypeEnum.NUMBER; + break; + case QUANTITY: + paramType = RestSearchParameterTypeEnum.QUANTITY; + break; + case REFERENCE: + paramType = RestSearchParameterTypeEnum.REFERENCE; + break; + case STRING: + paramType = RestSearchParameterTypeEnum.STRING; + break; + case TOKEN: + paramType = RestSearchParameterTypeEnum.TOKEN; + break; + case URI: + paramType = RestSearchParameterTypeEnum.URI; + break; + } + if (theNextSp.getStatus() != null) { + switch (theNextSp.getStatusElement().getValueAsEnum()) { + case ACTIVE: + status = RuntimeSearchParam.RuntimeSearchParamStatusEnum.ACTIVE; + break; + case DRAFT: + status = RuntimeSearchParam.RuntimeSearchParamStatusEnum.DRAFT; + break; + case RETIRED: + status = RuntimeSearchParam.RuntimeSearchParamStatusEnum.RETIRED; + break; + } + } + Set providesMembershipInCompartments = Collections.emptySet(); + Set targets = toStrings(theNextSp.getTarget()); + + if (isBlank(name) || isBlank(path) || paramType == null) { + if (paramType != RestSearchParameterTypeEnum.COMPOSITE) { + return null; + } + } + + IIdType id = theNextSp.getIdElement(); + String uri = ""; + boolean unique = false; + + List uniqueExts = theNextSp.getUndeclaredExtensionsByUrl(JpaConstants.EXT_SP_UNIQUE); + if (uniqueExts.size() > 0) { + IPrimitiveType uniqueExtsValuePrimitive = uniqueExts.get(0).getValueAsPrimitive(); + if (uniqueExtsValuePrimitive != null) { + if ("true".equalsIgnoreCase(uniqueExtsValuePrimitive.getValueAsString())) { + unique = true; + } + } + } + + List components = Collections.emptyList(); + Collection> base = Arrays.asList(theNextSp.getBaseElement()); + JpaRuntimeSearchParam retVal = new JpaRuntimeSearchParam(id, uri, name, description, path, paramType, providesMembershipInCompartments, targets, status, unique, components, base); + return retVal; + } + + private Set toStrings(List theTarget) { + HashSet retVal = new HashSet(); + for (CodeDt next : theTarget) { + if (isNotBlank(next.getValue())) { + retVal.add(next.getValue()); + } + } + return retVal; + } + } diff --git a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoSearchParameterDstu3.java b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoSearchParameterDstu3.java index 5a635aa35a5..3d14727ce1b 100644 --- a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoSearchParameterDstu3.java +++ b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoSearchParameterDstu3.java @@ -1,27 +1,23 @@ package ca.uhn.fhir.jpa.dao.dstu3; +import ca.uhn.fhir.context.FhirContext; import ca.uhn.fhir.jpa.dao.BaseSearchParamExtractor; import ca.uhn.fhir.jpa.dao.IFhirResourceDaoSearchParameter; import ca.uhn.fhir.jpa.dao.IFhirSystemDao; import ca.uhn.fhir.jpa.dao.ISearchParamRegistry; +import ca.uhn.fhir.jpa.dao.r4.FhirResourceDaoSearchParameterR4; import ca.uhn.fhir.jpa.entity.ResourceTable; import ca.uhn.fhir.parser.DataFormatException; import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException; import ca.uhn.fhir.util.ElementUtil; import org.apache.commons.lang3.time.DateUtils; -import org.hl7.fhir.dstu3.model.Bundle; -import org.hl7.fhir.dstu3.model.Enumerations; -import org.hl7.fhir.dstu3.model.Meta; -import org.hl7.fhir.dstu3.model.SearchParameter; +import org.hl7.fhir.dstu3.model.*; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.scheduling.annotation.Scheduled; -import org.springframework.transaction.TransactionDefinition; -import org.springframework.transaction.TransactionStatus; -import org.springframework.transaction.support.TransactionCallback; -import org.springframework.transaction.support.TransactionTemplate; + +import java.util.List; import static org.apache.commons.lang3.StringUtils.isBlank; -import static org.apache.commons.lang3.StringUtils.isNotBlank; /* * #%L @@ -54,26 +50,7 @@ public class FhirResourceDaoSearchParameterDstu3 extends FhirResourceDaoDstu3 mySystemDao; protected void markAffectedResources(SearchParameter theResource) { - if (theResource != null) { - String expression = theResource.getExpression(); - if (isNotBlank(expression)) { - final String resourceType = expression.substring(0, expression.indexOf('.')); - ourLog.info("Marking all resources of type {} for reindexing due to updated search parameter with path: {}", resourceType, expression); - - TransactionTemplate txTemplate = new TransactionTemplate(myPlatformTransactionManager); - txTemplate.setPropagationBehavior(TransactionDefinition.PROPAGATION_REQUIRED); - int updatedCount = txTemplate.execute(new TransactionCallback() { - @Override - public Integer doInTransaction(TransactionStatus theStatus) { - return myResourceTableDao.markResourcesOfTypeAsRequiringReindexing(resourceType); - } - }); - - ourLog.info("Marked {} resources for reindexing", updatedCount); - } - } - - mySearchParamRegistry.forceRefresh(); + markResourcesMatchingExpressionAsNeedingReindexing(theResource != null ? theResource.getExpression() : null); } /** @@ -123,57 +100,13 @@ public class FhirResourceDaoSearchParameterDstu3 extends FhirResourceDaoDstu3 status = theResource.getStatus(); + List base = theResource.getBase(); String expression = theResource.getExpression(); - if (theResource.getType() == Enumerations.SearchParamType.COMPOSITE && isBlank(expression)) { - - // this is ok - - } else if (isBlank(expression)) { - - throw new UnprocessableEntityException("SearchParameter.expression is missing"); - - } else { - - expression = expression.trim(); - theResource.setExpression(expression); - - String[] expressionSplit = BaseSearchParamExtractor.SPLIT.split(expression); - String allResourceName = null; - for (String nextPath : expressionSplit) { - nextPath = nextPath.trim(); - - int dotIdx = nextPath.indexOf('.'); - if (dotIdx == -1) { - throw new UnprocessableEntityException("Invalid SearchParameter.expression value \"" + nextPath + "\". Must start with a resource name"); - } - - String resourceName = nextPath.substring(0, dotIdx); - try { - getContext().getResourceDefinition(resourceName); - } catch (DataFormatException e) { - throw new UnprocessableEntityException("Invalid SearchParameter.expression value \"" + nextPath + "\": " + e.getMessage()); - } - - if (allResourceName == null) { - allResourceName = resourceName; - } else { - if (!allResourceName.equals(resourceName)) { - throw new UnprocessableEntityException("Invalid SearchParameter.expression value \"" + nextPath + "\". All paths in a single SearchParameter must match the same resource type"); - } - } - - } - - } // if have expression + FhirContext context = getContext(); + Enumerations.SearchParamType type = theResource.getType(); + FhirResourceDaoSearchParameterR4.validateSearchParam(type, status, base, expression, context); } } diff --git a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoSearchParameterR4.java b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoSearchParameterR4.java index 20070c88268..920cf6abd68 100644 --- a/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoSearchParameterR4.java +++ b/hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoSearchParameterR4.java @@ -1,7 +1,22 @@ package ca.uhn.fhir.jpa.dao.r4; +import ca.uhn.fhir.context.FhirContext; +import ca.uhn.fhir.jpa.dao.BaseSearchParamExtractor; +import ca.uhn.fhir.jpa.dao.IFhirResourceDaoSearchParameter; +import ca.uhn.fhir.jpa.dao.IFhirSystemDao; +import ca.uhn.fhir.jpa.entity.ResourceTable; +import ca.uhn.fhir.parser.DataFormatException; +import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException; +import ca.uhn.fhir.util.ElementUtil; +import org.apache.commons.lang3.time.DateUtils; +import org.hl7.fhir.instance.model.api.IPrimitiveType; +import org.hl7.fhir.r4.model.*; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.scheduling.annotation.Scheduled; + +import java.util.List; + import static org.apache.commons.lang3.StringUtils.isBlank; -import static org.apache.commons.lang3.StringUtils.isNotBlank; /* * #%L @@ -12,9 +27,9 @@ import static org.apache.commons.lang3.StringUtils.isNotBlank; * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at - * + * * http://www.apache.org/licenses/LICENSE-2.0 - * + * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. @@ -23,59 +38,16 @@ import static org.apache.commons.lang3.StringUtils.isNotBlank; * #L% */ -import org.apache.commons.lang3.time.DateUtils; -import org.hl7.fhir.r4.model.Bundle; -import org.hl7.fhir.r4.model.Enumerations; -import org.hl7.fhir.r4.model.Meta; -import org.hl7.fhir.r4.model.SearchParameter; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.scheduling.annotation.Scheduled; -import org.springframework.transaction.TransactionDefinition; -import org.springframework.transaction.TransactionStatus; -import org.springframework.transaction.annotation.Propagation; -import org.springframework.transaction.support.TransactionCallback; -import org.springframework.transaction.support.TransactionTemplate; - -import ca.uhn.fhir.jpa.dao.BaseSearchParamExtractor; -import ca.uhn.fhir.jpa.dao.IFhirResourceDaoSearchParameter; -import ca.uhn.fhir.jpa.dao.IFhirSystemDao; -import ca.uhn.fhir.jpa.dao.ISearchParamRegistry; -import ca.uhn.fhir.jpa.entity.ResourceTable; -import ca.uhn.fhir.parser.DataFormatException; -import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException; -import ca.uhn.fhir.util.ElementUtil; - public class FhirResourceDaoSearchParameterR4 extends FhirResourceDaoR4 implements IFhirResourceDaoSearchParameter { private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDaoSearchParameterR4.class); - @Autowired - private ISearchParamRegistry mySearchParamRegistry; @Autowired private IFhirSystemDao mySystemDao; protected void markAffectedResources(SearchParameter theResource) { - if (theResource != null) { - String expression = theResource.getExpression(); - if (isNotBlank(expression)) { - final String resourceType = expression.substring(0, expression.indexOf('.')); - ourLog.info("Marking all resources of type {} for reindexing due to updated search parameter with path: {}", resourceType, expression); - - TransactionTemplate txTemplate = new TransactionTemplate(myPlatformTransactionManager); - txTemplate.setPropagationBehavior(TransactionDefinition.PROPAGATION_REQUIRED); - int updatedCount = txTemplate.execute(new TransactionCallback() { - @Override - public Integer doInTransaction(TransactionStatus theStatus) { - return myResourceTableDao.markResourcesOfTypeAsRequiringReindexing(resourceType); - } - }); - - ourLog.info("Marked {} resources for reindexing", updatedCount); - } - } - - mySearchParamRegistry.forceRefresh(); + markResourcesMatchingExpressionAsNeedingReindexing(theResource != null ? theResource.getExpression() : null); } /** @@ -125,29 +97,37 @@ public class FhirResourceDaoSearchParameterR4 extends FhirResourceDaoR4 status = theResource.getStatus(); + List base = theResource.getBase(); + String expression = theResource.getExpression(); + FhirContext context = getContext(); + Enum type = theResource.getType(); + + FhirResourceDaoSearchParameterR4.validateSearchParam(type, status, base, expression, context); + } + + public static void validateSearchParam(Enum theType, Enum theStatus, List theBase, String theExpression, FhirContext theContext) { + if (theStatus == null) { + throw new UnprocessableEntityException("SearchParameter.status is missing or invalid"); } - if (ElementUtil.isEmpty(theResource.getBase())) { + if (ElementUtil.isEmpty(theBase)) { throw new UnprocessableEntityException("SearchParameter.base is missing"); } - String expression = theResource.getExpression(); - if (theResource.getType() == Enumerations.SearchParamType.COMPOSITE && isBlank(expression)) { + if (theType != null && theType.name().equals(Enumerations.SearchParamType.COMPOSITE.name()) && isBlank(theExpression)) { // this is ok - } else if (isBlank(expression)) { + } else if (isBlank(theExpression)) { throw new UnprocessableEntityException("SearchParameter.expression is missing"); } else { - expression = expression.trim(); - theResource.setExpression(expression); + theExpression = theExpression.trim(); - String[] expressionSplit = BaseSearchParamExtractor.SPLIT.split(expression); + String[] expressionSplit = BaseSearchParamExtractor.SPLIT.split(theExpression); String allResourceName = null; for (String nextPath : expressionSplit) { nextPath = nextPath.trim(); @@ -159,7 +139,7 @@ public class FhirResourceDaoSearchParameterR4 extends FhirResourceDaoR4 destinationAddresses = new ArrayList<>(); String[] destinationAddressStrings = StringUtils.split(endpointUrl, ","); for (String next : destinationAddressStrings) { - next = trim(defaultString(next)); - if (next.startsWith("mailto:")) { - next = next.substring("mailto:".length()); - } + next = processEmailAddressUri(next); if (isNotBlank(next)) { destinationAddresses.add(next); } } - String from = defaultString(subscription.getEmailDetails().getFrom(), mySubscriptionEmailInterceptor.getDefaultFromAddress()); + String from = processEmailAddressUri(defaultString(subscription.getEmailDetails().getFrom(), mySubscriptionEmailInterceptor.getDefaultFromAddress())); String subjectTemplate = defaultString(subscription.getEmailDetails().getSubjectTemplate(), provideDefaultSubjectTemplate()); EmailDetails details = new EmailDetails(); @@ -77,6 +74,14 @@ public class SubscriptionDeliveringEmailSubscriber extends BaseSubscriptionDeliv emailSender.send(details); } + private String processEmailAddressUri(String next) { + next = trim(defaultString(next)); + if (next.startsWith("mailto:")) { + next = next.substring("mailto:".length()); + } + return next; + } + private String provideDefaultSubjectTemplate() { return "HAPI FHIR Subscriptions"; diff --git a/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/BaseJpaDstu2Test.java b/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/BaseJpaDstu2Test.java index a1d35f4b229..90bf3a9b931 100644 --- a/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/BaseJpaDstu2Test.java +++ b/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/BaseJpaDstu2Test.java @@ -45,12 +45,17 @@ import static org.mockito.Mockito.mock; @RunWith(SpringJUnit4ClassRunner.class) @ContextConfiguration(classes = {TestDstu2Config.class}) public abstract class BaseJpaDstu2Test extends BaseJpaTest { + @Autowired + protected ISearchParamRegistry mySearchParamRegsitry; @Autowired protected ApplicationContext myAppCtx; @Autowired @Qualifier("myAppointmentDaoDstu2") protected IFhirResourceDao myAppointmentDao; @Autowired + @Qualifier("mySearchParameterDaoDstu2") + protected IFhirResourceDao mySearchParameterDao; + @Autowired @Qualifier("myBundleDaoDstu2") protected IFhirResourceDao myBundleDao; @Autowired diff --git a/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/FhirResourceDaoDstu2SearchCustomSearchParamTest.java b/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/FhirResourceDaoDstu2SearchCustomSearchParamTest.java new file mode 100644 index 00000000000..f330d1a765e --- /dev/null +++ b/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/FhirResourceDaoDstu2SearchCustomSearchParamTest.java @@ -0,0 +1,867 @@ +package ca.uhn.fhir.jpa.dao.dstu2; + +import ca.uhn.fhir.jpa.dao.SearchParameterMap; +import ca.uhn.fhir.jpa.dao.dstu3.BaseJpaDstu3Test; +import ca.uhn.fhir.model.api.ExtensionDt; +import ca.uhn.fhir.model.api.Include; +import ca.uhn.fhir.model.dstu2.composite.CodeableConceptDt; +import ca.uhn.fhir.model.dstu2.composite.CodingDt; +import ca.uhn.fhir.model.dstu2.composite.ResourceReferenceDt; +import ca.uhn.fhir.model.dstu2.resource.Appointment; +import ca.uhn.fhir.model.dstu2.resource.Patient; +import ca.uhn.fhir.model.dstu2.resource.Practitioner; +import ca.uhn.fhir.model.dstu2.resource.SearchParameter; +import ca.uhn.fhir.model.dstu2.valueset.*; +import ca.uhn.fhir.model.primitive.*; +import ca.uhn.fhir.rest.api.server.IBundleProvider; +import ca.uhn.fhir.rest.param.*; +import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException; +import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException; +import ca.uhn.fhir.util.TestUtil; +import org.hl7.fhir.instance.model.api.IIdType; +import org.junit.AfterClass; +import org.junit.Before; +import org.junit.Test; + +import java.util.List; + +import static org.hamcrest.Matchers.*; +import static org.junit.Assert.*; + +public class FhirResourceDaoDstu2SearchCustomSearchParamTest extends BaseJpaDstu2Test { + private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDaoDstu2SearchCustomSearchParamTest.class); + + @Before + public void beforeDisableResultReuse() { + myDaoConfig.setReuseCachedSearchResultsForMillis(null); + } + + @Test + public void testCreateInvalidParamInvalidResourceName() { + SearchParameter fooSp = new SearchParameter(); + fooSp.setBase(ResourceTypeEnum.PATIENT); + fooSp.setCode("foo"); + fooSp.setType(SearchParamTypeEnum.TOKEN); + fooSp.setXpath("PatientFoo.gender"); + fooSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + fooSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + try { + mySearchParameterDao.create(fooSp, mySrd); + fail(); + } catch (UnprocessableEntityException e) { + assertEquals("Invalid SearchParameter.expression value \"PatientFoo.gender\": Unknown resource name \"PatientFoo\" (this name is not known in FHIR version \"DSTU2\")", e.getMessage()); + } + } + + @Test + public void testCreateInvalidNoBase() { + SearchParameter fooSp = new SearchParameter(); + fooSp.setCode("foo"); + fooSp.setType(SearchParamTypeEnum.TOKEN); + fooSp.setXpath("Patient.gender"); + fooSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + fooSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + try { + mySearchParameterDao.create(fooSp, mySrd); + fail(); + } catch (UnprocessableEntityException e) { + assertEquals("SearchParameter.base is missing", e.getMessage()); + } + } + + @Test + public void testCreateInvalidParamMismatchedResourceName() { + SearchParameter fooSp = new SearchParameter(); + fooSp.setBase(ResourceTypeEnum.PATIENT); + fooSp.setCode("foo"); + fooSp.setType(SearchParamTypeEnum.TOKEN); + fooSp.setXpath("Patient.gender or Observation.code"); + fooSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + fooSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + try { + mySearchParameterDao.create(fooSp, mySrd); + fail(); + } catch (UnprocessableEntityException e) { + assertEquals("Invalid SearchParameter.expression value \"Observation.code\". All paths in a single SearchParameter must match the same resource type", e.getMessage()); + } + } + + @Test + public void testCreateInvalidParamNoPath() { + SearchParameter fooSp = new SearchParameter(); + fooSp.setBase(ResourceTypeEnum.PATIENT); + fooSp.setCode("foo"); + fooSp.setType(SearchParamTypeEnum.TOKEN); + fooSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + fooSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + try { + mySearchParameterDao.create(fooSp, mySrd); + fail(); + } catch (UnprocessableEntityException e) { + assertEquals("SearchParameter.expression is missing", e.getMessage()); + } + } + + @Test + public void testCreateInvalidParamNoResourceName() { + SearchParameter fooSp = new SearchParameter(); + fooSp.setBase(ResourceTypeEnum.PATIENT); + fooSp.setCode("foo"); + fooSp.setType(SearchParamTypeEnum.TOKEN); + fooSp.setXpath("gender"); + fooSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + fooSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + try { + mySearchParameterDao.create(fooSp, mySrd); + fail(); + } catch (UnprocessableEntityException e) { + assertEquals("Invalid SearchParameter.expression value \"gender\". Must start with a resource name", e.getMessage()); + } + } + + @Test + public void testCreateInvalidParamParamNullStatus() { + + SearchParameter fooSp = new SearchParameter(); + fooSp.setBase(ResourceTypeEnum.PATIENT); + fooSp.setCode("foo"); + fooSp.setType(SearchParamTypeEnum.TOKEN); + fooSp.setXpath("Patient.gender"); + fooSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + fooSp.setStatus((ConformanceResourceStatusEnum) null); + try { + mySearchParameterDao.create(fooSp, mySrd); + fail(); + } catch (UnprocessableEntityException e) { + assertEquals("SearchParameter.status is missing or invalid", e.getMessage()); + } + + } + + @Test + public void testExtensionWithNoValueIndexesWithoutFailure() { + SearchParameter eyeColourSp = new SearchParameter(); + eyeColourSp.setBase(ResourceTypeEnum.PATIENT); + eyeColourSp.setCode("eyecolour"); + eyeColourSp.setType(SearchParamTypeEnum.TOKEN); + eyeColourSp.setXpath("Patient.extension('http://acme.org/eyecolour')"); + eyeColourSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + eyeColourSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + mySearchParameterDao.create(eyeColourSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient p1 = new Patient(); + p1.setActive(true); + p1.addUndeclaredExtension(false, "http://acme.org/eyecolour").addUndeclaredExtension(false, "http://foo").setValue(new StringDt("VAL")); + IIdType p1id = myPatientDao.create(p1).getId().toUnqualifiedVersionless(); + + } + + @Test + public void testSearchForExtensionToken() { + SearchParameter eyeColourSp = new SearchParameter(); + eyeColourSp.setBase(ResourceTypeEnum.PATIENT); + eyeColourSp.setCode("eyecolour"); + eyeColourSp.setType(SearchParamTypeEnum.TOKEN); + eyeColourSp.setXpath("Patient.extension('http://acme.org/eyecolour')"); + eyeColourSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + eyeColourSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + mySearchParameterDao.create(eyeColourSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient p1 = new Patient(); + p1.setActive(true); + p1.addUndeclaredExtension(false, "http://acme.org/eyecolour").setValue(new CodeDt("blue")); + IIdType p1id = myPatientDao.create(p1).getId().toUnqualifiedVersionless(); + + Patient p2 = new Patient(); + p2.setActive(true); + p2.addUndeclaredExtension(false, "http://acme.org/eyecolour").setValue(new CodeDt("green")); + IIdType p2id = myPatientDao.create(p2).getId().toUnqualifiedVersionless(); + + // Try with custom gender SP + SearchParameterMap map = new SearchParameterMap(); + map.add("eyecolour", new TokenParam(null, "blue")); + IBundleProvider results = myPatientDao.search(map); + List foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p1id.getValue())); + + } + + @Test + public void testSearchForExtensionTwoDeepCoding() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("foobar"); + siblingSp.setType(SearchParamTypeEnum.TOKEN); + siblingSp.setXpath("Patient.extension('http://acme.org/foo').extension('http://acme.org/bar')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + siblingSp.addTarget(ResourceTypeEnum.ORGANIZATION); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient patient = new Patient(); + patient.addName().addFamily("P2"); + ExtensionDt extParent = patient + .addUndeclaredExtension(false, + "http://acme.org/foo"); + extParent + .addUndeclaredExtension(false, + "http://acme.org/bar") + .setValue(new CodingDt().setSystem("foo").setCode("bar")); + + IIdType p2id = myPatientDao.create(patient).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + map = new SearchParameterMap(); + map.add("foobar", new TokenParam("foo", "bar")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + } + + @Test + public void testSearchForExtensionTwoDeepCodeableConcept() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("foobar"); + siblingSp.setType(SearchParamTypeEnum.TOKEN); + siblingSp.setXpath("Patient.extension('http://acme.org/foo').extension('http://acme.org/bar')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + siblingSp.addTarget(ResourceTypeEnum.ORGANIZATION); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient patient = new Patient(); + patient.addName().addFamily("P2"); + ExtensionDt extParent = patient + .addUndeclaredExtension(false,"http://acme.org/foo"); + extParent + .addUndeclaredExtension(false, + "http://acme.org/bar") + .setValue(new CodeableConceptDt().addCoding(new CodingDt().setSystem("foo").setCode("bar"))); + + IIdType p2id = myPatientDao.create(patient).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + map = new SearchParameterMap(); + map.add("foobar", new TokenParam("foo", "bar")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + } + + @Test + public void testSearchForExtensionTwoDeepReferenceWrongType() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("foobar"); + siblingSp.setType(SearchParamTypeEnum.REFERENCE); + siblingSp.setXpath("Patient.extension('http://acme.org/foo').extension('http://acme.org/bar')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + siblingSp.addTarget(ResourceTypeEnum.OBSERVATION); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Appointment apt = new Appointment(); + apt.setStatus(AppointmentStatusEnum.ARRIVED); + IIdType aptId = myAppointmentDao.create(apt).getId().toUnqualifiedVersionless(); + + Patient patient = new Patient(); + patient.addName().addFamily("P2"); + ExtensionDt extParent = patient + .addUndeclaredExtension(false, + "http://acme.org/foo"); + + extParent + .addUndeclaredExtension(false, + "http://acme.org/bar") + .setValue(new ResourceReferenceDt(aptId.getValue())); + + IIdType p2id = myPatientDao.create(patient).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + map = new SearchParameterMap(); + map.add("foobar", new ReferenceParam(aptId.getValue())); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, empty()); + } + + @Test + public void testSearchForExtensionTwoDeepReferenceWithoutType() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("foobar"); + siblingSp.setType(SearchParamTypeEnum.REFERENCE); + siblingSp.setXpath("Patient.extension('http://acme.org/foo').extension('http://acme.org/bar')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Appointment apt = new Appointment(); + apt.setStatus(AppointmentStatusEnum.ARRIVED); + IIdType aptId = myAppointmentDao.create(apt).getId().toUnqualifiedVersionless(); + + Patient patient = new Patient(); + patient.addName().addFamily("P2"); + ExtensionDt extParent = patient + .addUndeclaredExtension(false, + "http://acme.org/foo"); + + extParent + .addUndeclaredExtension(false, + "http://acme.org/bar") + .setValue(new ResourceReferenceDt(aptId.getValue())); + + IIdType p2id = myPatientDao.create(patient).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + map = new SearchParameterMap(); + map.add("foobar", new ReferenceParam(aptId.getValue())); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + } + + @Test + public void testSearchForExtensionTwoDeepReference() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("foobar"); + siblingSp.setType(SearchParamTypeEnum.REFERENCE); + siblingSp.setXpath("Patient.extension('http://acme.org/foo').extension('http://acme.org/bar')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + siblingSp.addTarget(ResourceTypeEnum.APPOINTMENT); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Appointment apt = new Appointment(); + apt.setStatus(AppointmentStatusEnum.ARRIVED); + IIdType aptId = myAppointmentDao.create(apt).getId().toUnqualifiedVersionless(); + + Patient patient = new Patient(); + patient.addName().addFamily("P2"); + ExtensionDt extParent = patient + .addUndeclaredExtension(false, "http://acme.org/foo"); + + extParent + .addUndeclaredExtension(false, "http://acme.org/bar") + .setValue(new ResourceReferenceDt(aptId.getValue())); + + IIdType p2id = myPatientDao.create(patient).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + map = new SearchParameterMap(); + map.add("foobar", new ReferenceParam(aptId.getValue())); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + } + + @Test + public void testSearchForExtensionTwoDeepDate() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("foobar"); + siblingSp.setType(SearchParamTypeEnum.DATE_DATETIME); + siblingSp.setXpath("Patient.extension('http://acme.org/foo').extension('http://acme.org/bar')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Appointment apt = new Appointment(); + apt.setStatus(AppointmentStatusEnum.ARRIVED); + IIdType aptId = myAppointmentDao.create(apt).getId().toUnqualifiedVersionless(); + + Patient patient = new Patient(); + patient.addName().addFamily("P2"); + ExtensionDt extParent = patient + .addUndeclaredExtension(false, + "http://acme.org/foo"); + + extParent + .addUndeclaredExtension(false, + "http://acme.org/bar") + .setValue(new DateDt("2012-01-02")); + + IIdType p2id = myPatientDao.create(patient).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + map = new SearchParameterMap(); + map.add("foobar", new DateParam("2012-01-02")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + } + + @Test + public void testSearchForExtensionTwoDeepNumber() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("foobar"); + siblingSp.setType(SearchParamTypeEnum.NUMBER); + siblingSp.setXpath("Patient.extension('http://acme.org/foo').extension('http://acme.org/bar')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient patient = new Patient(); + patient.addName().addFamily("P2"); + ExtensionDt extParent = patient + .addUndeclaredExtension(false, + "http://acme.org/foo"); + extParent + .addUndeclaredExtension(false, + "http://acme.org/bar") + .setValue(new IntegerDt(5)); + + IIdType p2id = myPatientDao.create(patient).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + map = new SearchParameterMap(); + map.add("foobar", new NumberParam("5")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + } + + @Test + public void testSearchForExtensionTwoDeepDecimal() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("foobar"); + siblingSp.setType(SearchParamTypeEnum.NUMBER); + siblingSp.setXpath("Patient.extension('http://acme.org/foo').extension('http://acme.org/bar')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient patient = new Patient(); + patient.addName().addFamily("P2"); + ExtensionDt extParent = patient + .addUndeclaredExtension(false, + "http://acme.org/foo"); + extParent + .addUndeclaredExtension(false, + "http://acme.org/bar") + .setValue(new DecimalDt("2.1")); + + IIdType p2id = myPatientDao.create(patient).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + map = new SearchParameterMap(); + map.add("foobar", new NumberParam("2.1")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + } + + @Test + public void testSearchForExtensionTwoDeepString() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("foobar"); + siblingSp.setType(SearchParamTypeEnum.STRING); + siblingSp.setXpath("Patient.extension('http://acme.org/foo').extension('http://acme.org/bar')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient patient = new Patient(); + patient.addName().addFamily("P2"); + ExtensionDt extParent = patient + .addUndeclaredExtension(false, + "http://acme.org/foo"); + extParent + .addUndeclaredExtension(false, + "http://acme.org/bar") + .setValue(new StringDt("HELLOHELLO")); + + IIdType p2id = myPatientDao.create(patient).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + map = new SearchParameterMap(); + map.add("foobar", new StringParam("hello")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + } + + @Test + public void testSearchForExtensionReferenceWithNonMatchingTarget() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("sibling"); + siblingSp.setType(SearchParamTypeEnum.REFERENCE); + siblingSp.setXpath("Patient.extension('http://acme.org/sibling')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + siblingSp.addTarget(ResourceTypeEnum.ORGANIZATION); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient p1 = new Patient(); + p1.addName().addFamily("P1"); + IIdType p1id = myPatientDao.create(p1).getId().toUnqualifiedVersionless(); + + Patient p2 = new Patient(); + p2.addName().addFamily("P2"); + p2.addUndeclaredExtension(false, "http://acme.org/sibling").setValue(new ResourceReferenceDt(p1id)); + IIdType p2id = myPatientDao.create(p2).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + // Search by ref + map = new SearchParameterMap(); + map.add("sibling", new ReferenceParam(p1id.getValue())); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, empty()); + + // Search by chain + map = new SearchParameterMap(); + map.add("sibling", new ReferenceParam("name", "P1")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, empty()); + + } + + + + @Test + public void testSearchForExtensionReferenceWithoutTarget() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("sibling"); + siblingSp.setType(SearchParamTypeEnum.REFERENCE); + siblingSp.setXpath("Patient.extension('http://acme.org/sibling')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient p1 = new Patient(); + p1.addName().addFamily("P1"); + IIdType p1id = myPatientDao.create(p1).getId().toUnqualifiedVersionless(); + + Patient p2 = new Patient(); + p2.addName().addFamily("P2"); + p2.addUndeclaredExtension(false, "http://acme.org/sibling").setValue(new ResourceReferenceDt(p1id)); + + IIdType p2id = myPatientDao.create(p2).getId().toUnqualifiedVersionless(); + Appointment app = new Appointment(); + app.addParticipant().getActor().setReference(p2id.getValue()); + IIdType appid = myAppointmentDao.create(app).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + // Search by ref + map = new SearchParameterMap(); + map.add("sibling", new ReferenceParam(p1id.getValue())); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + + // Search by chain + map = new SearchParameterMap(); + map.add("sibling", new ReferenceParam("name", "P1")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + + // Search by two level chain + map = new SearchParameterMap(); + map.add("patient", new ReferenceParam("sibling.name", "P1")); + results = myAppointmentDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, containsInAnyOrder(appid.getValue())); + + + } + + @Test + public void testSearchForExtensionReferenceWithTarget() { + SearchParameter siblingSp = new SearchParameter(); + siblingSp.setBase(ResourceTypeEnum.PATIENT); + siblingSp.setCode("sibling"); + siblingSp.setType(SearchParamTypeEnum.REFERENCE); + siblingSp.setXpath("Patient.extension('http://acme.org/sibling')"); + siblingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + siblingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + siblingSp.addTarget(ResourceTypeEnum.PATIENT); + mySearchParameterDao.create(siblingSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient p1 = new Patient(); + p1.addName().addFamily("P1"); + IIdType p1id = myPatientDao.create(p1).getId().toUnqualifiedVersionless(); + + Patient p2 = new Patient(); + p2.addName().addFamily("P2"); + p2.addUndeclaredExtension(false, "http://acme.org/sibling").setValue(new ResourceReferenceDt(p1id)); + IIdType p2id = myPatientDao.create(p2).getId().toUnqualifiedVersionless(); + + Appointment app = new Appointment(); + app.addParticipant().getActor().setReference(p2id.getValue()); + IIdType appid = myAppointmentDao.create(app).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + // Search by ref + map = new SearchParameterMap(); + map.add("sibling", new ReferenceParam(p1id.getValue())); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + + // Search by chain + map = new SearchParameterMap(); + map.add("sibling", new ReferenceParam("name", "P1")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(p2id.getValue())); + + // Search by two level chain + map = new SearchParameterMap(); + map.add("patient", new ReferenceParam("sibling.name", "P1")); + results = myAppointmentDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, containsInAnyOrder(appid.getValue())); + + } + + @Test + public void testIncludeExtensionReferenceAsRecurse() { + SearchParameter attendingSp = new SearchParameter(); + attendingSp.setBase(ResourceTypeEnum.PATIENT); + attendingSp.setCode("attending"); + attendingSp.setType(SearchParamTypeEnum.REFERENCE); + attendingSp.setXpath("Patient.extension('http://acme.org/attending')"); + attendingSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + attendingSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + attendingSp.addTarget(ResourceTypeEnum.PRACTITIONER); + IIdType spId = mySearchParameterDao.create(attendingSp, mySrd).getId().toUnqualifiedVersionless(); + + mySearchParamRegsitry.forceRefresh(); + + Practitioner p1 = new Practitioner(); + p1.getName().addFamily("P1"); + IIdType p1id = myPractitionerDao.create(p1).getId().toUnqualifiedVersionless(); + + Patient p2 = new Patient(); + p2.addName().addFamily("P2"); + p2.addUndeclaredExtension(false, "http://acme.org/attending").setValue(new ResourceReferenceDt(p1id)); + IIdType p2id = myPatientDao.create(p2).getId().toUnqualifiedVersionless(); + + Appointment app = new Appointment(); + app.addParticipant().getActor().setReference(p2id.getValue()); + IIdType appId = myAppointmentDao.create(app).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + map = new SearchParameterMap(); + map.addInclude(new Include("Appointment:patient", true)); + map.addInclude(new Include("Patient:attending", true)); + results = myAppointmentDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(appId.getValue(), p2id.getValue(), p1id.getValue())); + + } + + @Test + public void testSearchWithCustomParam() { + + SearchParameter fooSp = new SearchParameter(); + fooSp.setBase(ResourceTypeEnum.PATIENT); + fooSp.setCode("foo"); + fooSp.setType(SearchParamTypeEnum.TOKEN); + fooSp.setXpath("Patient.gender"); + fooSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + fooSp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + IIdType spId = mySearchParameterDao.create(fooSp, mySrd).getId().toUnqualifiedVersionless(); + + mySearchParamRegsitry.forceRefresh(); + + Patient pat = new Patient(); + pat.setGender(AdministrativeGenderEnum.MALE); + IIdType patId = myPatientDao.create(pat, mySrd).getId().toUnqualifiedVersionless(); + + Patient pat2 = new Patient(); + pat.setGender(AdministrativeGenderEnum.FEMALE); + IIdType patId2 = myPatientDao.create(pat2, mySrd).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + // Try with custom gender SP + map = new SearchParameterMap(); + map.add("foo", new TokenParam(null, "male")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(patId.getValue())); + + // Try with normal gender SP + map = new SearchParameterMap(); + map.add("gender", new TokenParam(null, "male")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(patId.getValue())); + + // Delete the param + mySearchParameterDao.delete(spId, mySrd); + + mySearchParamRegsitry.forceRefresh(); + mySystemDao.performReindexingPass(100); + + // Try with custom gender SP + map = new SearchParameterMap(); + map.add("foo", new TokenParam(null, "male")); + try { + myPatientDao.search(map).size(); + fail(); + } catch (InvalidRequestException e) { + assertEquals("Unknown search parameter foo for resource type Patient", e.getMessage()); + } + } + + @Test + public void testSearchWithCustomParamDraft() { + + SearchParameter fooSp = new SearchParameter(); + fooSp.setBase(ResourceTypeEnum.PATIENT); + fooSp.setCode("foo"); + fooSp.setType(SearchParamTypeEnum.TOKEN); + fooSp.setXpath("Patient.gender"); + fooSp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + fooSp.setStatus(ConformanceResourceStatusEnum.DRAFT); + mySearchParameterDao.create(fooSp, mySrd); + + mySearchParamRegsitry.forceRefresh(); + + Patient pat = new Patient(); + pat.setGender(AdministrativeGenderEnum.MALE); + IIdType patId = myPatientDao.create(pat, mySrd).getId().toUnqualifiedVersionless(); + + Patient pat2 = new Patient(); + pat.setGender(AdministrativeGenderEnum.FEMALE); + IIdType patId2 = myPatientDao.create(pat2, mySrd).getId().toUnqualifiedVersionless(); + + SearchParameterMap map; + IBundleProvider results; + List foundResources; + + // Try with custom gender SP (should find nothing) + map = new SearchParameterMap(); + map.add("foo", new TokenParam(null, "male")); + try { + myPatientDao.search(map).size(); + fail(); + } catch (InvalidRequestException e) { + assertEquals("Unknown search parameter foo for resource type Patient", e.getMessage()); + } + + // Try with normal gender SP + map = new SearchParameterMap(); + map.add("gender", new TokenParam(null, "male")); + results = myPatientDao.search(map); + foundResources = toUnqualifiedVersionlessIdValues(results); + assertThat(foundResources, contains(patId.getValue())); + + } + + @Test + public void testCustomReferenceParameter() throws Exception { + SearchParameter sp = new SearchParameter(); + sp.setBase(ResourceTypeEnum.PATIENT); + sp.setCode("myDoctor"); + sp.setType(SearchParamTypeEnum.REFERENCE); + sp.setXpath("Patient.extension('http://fmcna.com/myDoctor')"); + sp.setXpathUsage(XPathUsageTypeEnum.NORMAL); + sp.setStatus(ConformanceResourceStatusEnum.ACTIVE); + mySearchParameterDao.create(sp); + + Practitioner pract = new Practitioner(); + pract.setId("A"); + pract.getName().addFamily("PRACT"); + myPractitionerDao.update(pract); + + Patient pat = new Patient(); + pat.addUndeclaredExtension(false, "http://fmcna.com/myDoctor").setValue(new ResourceReferenceDt("Practitioner/A")); + + IIdType pid = myPatientDao.create(pat, mySrd).getId().toUnqualifiedVersionless(); + + SearchParameterMap params = new SearchParameterMap(); + params.add("myDoctor", new ReferenceParam("A")); + IBundleProvider outcome = myPatientDao.search(params); + List ids = toUnqualifiedVersionlessIdValues(outcome); + ourLog.info("IDS: " + ids); + assertThat(ids, contains(pid.getValue())); + } + + @AfterClass + public static void afterClassClearContext() { + TestUtil.clearAllStaticFieldsForUnitTest(); + } + +} diff --git a/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3SearchCustomSearchParamTest.java b/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3SearchCustomSearchParamTest.java index 0951698ca1c..e90a6f1fc45 100644 --- a/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3SearchCustomSearchParamTest.java +++ b/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3SearchCustomSearchParamTest.java @@ -130,7 +130,7 @@ public class FhirResourceDaoDstu3SearchCustomSearchParamTest extends BaseJpaDstu mySearchParameterDao.create(fooSp, mySrd); fail(); } catch (UnprocessableEntityException e) { - assertEquals("SearchParameter.status is missing or invalid: null", e.getMessage()); + assertEquals("SearchParameter.status is missing or invalid", e.getMessage()); } } diff --git a/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchCustomSearchParamTest.java b/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchCustomSearchParamTest.java index 121b48d8d7e..36ec78c6f00 100644 --- a/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchCustomSearchParamTest.java +++ b/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchCustomSearchParamTest.java @@ -132,7 +132,7 @@ public class FhirResourceDaoR4SearchCustomSearchParamTest extends BaseJpaR4Test mySearchParameterDao.create(fooSp, mySrd); fail(); } catch (UnprocessableEntityException e) { - assertEquals("SearchParameter.status is missing or invalid: null", e.getMessage()); + assertEquals("SearchParameter.status is missing or invalid", e.getMessage()); } } diff --git a/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/subscription/email/EmailSubscriptionDstu3Test.java b/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/subscription/email/EmailSubscriptionDstu3Test.java index d3e9c7657b4..84c12f14348 100644 --- a/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/subscription/email/EmailSubscriptionDstu3Test.java +++ b/hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/subscription/email/EmailSubscriptionDstu3Test.java @@ -176,6 +176,53 @@ public class EmailSubscriptionDstu3Test extends BaseResourceProviderDstu3Test { String criteria1 = "Observation?code=SNOMED-CT|" + code + "&_format=xml"; Subscription sub1 = createSubscription(criteria1, payload); + Subscription subscriptionTemp = ourClient.read(Subscription.class, sub1.getId()); + Assert.assertNotNull(subscriptionTemp); + subscriptionTemp.getChannel().addExtension() + .setUrl(JpaConstants.EXT_SUBSCRIPTION_EMAIL_FROM) + .setValue(new StringType("mailto:myfrom@from.com")); + subscriptionTemp.getChannel().addExtension() + .setUrl(JpaConstants.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE) + .setValue(new StringType("This is a subject")); + subscriptionTemp.setIdElement(subscriptionTemp.getIdElement().toUnqualifiedVersionless()); + + + ourLog.info(myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(subscriptionTemp)); + + ourClient.update().resource(subscriptionTemp).withId(subscriptionTemp.getIdElement()).execute(); + waitForQueueToDrain(); + + + sendObservation(code, "SNOMED-CT"); + waitForQueueToDrain(); + + waitForSize(1, 20000, new Callable() { + @Override + public Number call() throws Exception { + return ourTestSmtp.getReceivedMessages().length; + } + }); + + List received = Arrays.asList(ourTestSmtp.getReceivedMessages()); + assertEquals(1, received.size()); + assertEquals(1, received.get(0).getFrom().length); + assertEquals("myfrom@from.com", ((InternetAddress)received.get(0).getFrom()[0]).getAddress()); + assertEquals(1, received.get(0).getAllRecipients().length); + assertEquals("foo@example.com", ((InternetAddress)received.get(0).getAllRecipients()[0]).getAddress()); + assertEquals("text/plain; charset=us-ascii", received.get(0).getContentType()); + assertEquals("This is a subject", received.get(0).getSubject().toString().trim()); + assertEquals("This is the body", received.get(0).getContent().toString().trim()); + assertEquals(mySubscriptionIds.get(0).toUnqualifiedVersionless().getValue(), received.get(0).getHeader("X-FHIR-Subscription")[0]); + } + + @Test + public void testEmailSubscriptionWithCustomNoMailtoOnFrom() throws Exception { + String payload = "This is the body"; + + String code = "1000000050"; + String criteria1 = "Observation?code=SNOMED-CT|" + code + "&_format=xml"; + Subscription sub1 = createSubscription(criteria1, payload); + Subscription subscriptionTemp = ourClient.read(Subscription.class, sub1.getId()); Assert.assertNotNull(subscriptionTemp); subscriptionTemp.getChannel().addExtension()