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Implement #826 - add OSGI support and Apache Karaf features with integration tests

This commit is contained in:
jpoth 2018-02-27 18:52:47 +01:00
parent 2eee606468
commit 66ebfa0ed3
65 changed files with 20308 additions and 30 deletions
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17
hapi-fhir-base/pom.xml
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@ -10,7 +10,7 @@
</parent>
<artifactId>hapi-fhir-base</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<url>http://jamesagnew.github.io/hapi-fhir/</url>
@ -150,6 +150,21 @@
</executions>
</plugin>
-->
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Import-Package>
<!--required when using servers-->
ca.uhn.fhir.rest.api.server;resolution:=optional,
ca.uhn.fhir.model.api;resolution:=optional,
*
</Import-Package>
</instructions>
</configuration>
</plugin>
</plugins>
<resources>
<resource>

7
hapi-fhir-client/pom.xml
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@ -9,7 +9,7 @@
</parent>
<artifactId>hapi-fhir-client</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR - Client Framework</name>
@ -69,6 +69,11 @@
<argLine>${argLine} -Dfile.encoding=UTF-8 -Xmx712m</argLine>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
</plugin>
</plugins>
</build>

18
hapi-fhir-converter/pom.xml
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@ -10,7 +10,7 @@
</parent>
<artifactId>hapi-fhir-converter</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<dependencies>
<dependency>
@ -134,5 +134,21 @@
<filtering>false</filtering>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Import-Package>
ca.uhn.fhir.rest.server*;resolution:=optional,
javax.servlet.http;resolution:=optional,
*
</Import-Package>
</instructions>
</configuration>
</plugin>
</plugins>
</build>
</project>

218
hapi-fhir-karaf-features/pom.xml Normal file
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@ -0,0 +1,218 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>3.3.0-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<groupId>ca.uhn.hapi.fhir.karaf</groupId>
<artifactId>hapi-fhir</artifactId>
<packaging>pom</packaging>
<name>HAPI FHIR - Apache Karaf :: Features</name>
<properties>
<features.file>features.xml</features.file>
<pax-logging-version>1.8.6</pax-logging-version>
<felix-framework-version>3.2.2</felix-framework-version>
</properties>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2.1</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu2.1</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-converter</artifactId>
<version>${project.version}</version>
</dependency>
<!-- The validate plugin will export these provided dependencies bundles export packages first -->
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.core</artifactId>
<version>4.3.1</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.ops4j.pax.logging</groupId>
<artifactId>pax-logging-api</artifactId>
<version>${pax-logging-version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.ops4j.pax.logging</groupId>
<artifactId>pax-logging-service</artifactId>
<version>${pax-logging-version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.felix</groupId>
<artifactId>org.apache.felix.framework</artifactId>
<version>${felix-framework-version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.felix</groupId>
<artifactId>org.apache.felix.configadmin</artifactId>
<version>1.8.8</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.aries.blueprint</groupId>
<artifactId>org.apache.aries.blueprint.api</artifactId>
<version>1.0.1</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.aries.blueprint</groupId>
<artifactId>org.apache.aries.blueprint.core</artifactId>
<version>1.0.1</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.karaf.shell</groupId>
<artifactId>org.apache.karaf.shell.core</artifactId>
<version>${apache_karaf_version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.karaf.features</groupId>
<artifactId>framework</artifactId>
<version>${apache_karaf_version}</version>
<type>kar</type>
<scope>provided</scope>
</dependency>
</dependencies>
<build>
<resources>
<resource>
<directory>src/main/resources</directory>
<filtering>true</filtering>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>3.0.2</version>
<executions>
<execution>
<id>filter</id>
<phase>generate-resources</phase>
<goals>
<goal>resources</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<executions>
<execution>
<id>attach-artifacts</id>
<phase>package</phase>
<goals>
<goal>attach-artifact</goal>
</goals>
<configuration>
<artifacts>
<artifact>
<file>target/classes/features.xml</file>
<type>xml</type>
<classifier>features</classifier>
</artifact>
</artifacts>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.karaf.tooling</groupId>
<artifactId>karaf-maven-plugin</artifactId>
<version>${apache_karaf_version}</version>
<configuration>
<descriptors>
<descriptor>file://${project.build.directory}/classes/${features.file}</descriptor>
<descriptor>mvn:org.apache.karaf.features/enterprise/${apache_karaf_version}/xml/features</descriptor>
</descriptors>
<distribution>org.apache.karaf.features:framework</distribution>
<javase>1.8</javase>
<framework>
<feature>framework</feature>
</framework>
<features>
<feature>hapi-fhir*</feature>
</features>
</configuration>
<executions>
<execution>
<id>validate</id>
<phase>process-resources</phase>
<goals>
<goal>verify</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>

128
hapi-fhir-karaf-features/src/main/resources/features.xml Normal file
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@ -0,0 +1,128 @@
<?xml version='1.0' encoding='UTF-8'?>
<!--
HAPI FHIR - Apache Karaf Features
Copyright (C) 2014 - 2018 University Health Network
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
-->
<features name='hapi-fhir-${project.version}' xmlns="http://karaf.apache.org/xmlns/features/v1.3.0">
<feature name='hapi-fhir' version='${project.version}' start-level='50'>
<feature prerequisite="true">wrap</feature>
<bundle dependency='true'>mvn:com.google.code.gson/gson/${gson_version}</bundle>
<bundle dependency='true'>mvn:org.apache.commons/commons-lang3/${commons_lang3_version}</bundle>
<bundle dependency='true'>mvn:commons-codec/commons-codec/${commons_codec_version}</bundle>
<bundle dependency='true'>mvn:commons-io/commons-io/${commons_io_version}</bundle>
<bundle dependency='true'>mvn:com.google.guava/guava/${guava_version}</bundle>
<bundle dependency='true'>wrap:mvn:com.google.errorprone/error_prone_annotations/${error_prone_annotations_version}</bundle>
<bundle dependency='true'>mvn:org.codehaus.woodstox/stax2-api/${stax2_api_version}</bundle>
<bundle dependency='true'>mvn:org.codehaus.woodstox/woodstox-core-asl/${woodstox_core_asl_version}</bundle>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-base/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-utilities' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir</feature>
<bundle dependency='true'>mvn:com.google.code.gson/gson/${gson_version}</bundle>
<bundle dependency='true'>mvn:commons-codec/commons-codec/${commons_codec_version}</bundle>
<bundle dependency='true'>mvn:commons-io/commons-io/${commons_io_version}</bundle>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-utilities/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-dstu2' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir</feature>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-structures-dstu2/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-hl7org-dstu2' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir</feature>
<feature version='${project.version}'>hapi-fhir-utilities</feature>
<bundle dependency='true'>
mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.saxon/${servicemix_saxon_version}
</bundle>
<bundle dependency='true'>
mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlresolver/${servicemix_xmlresolver_version}
</bundle>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-structures-hl7org-dstu2/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-dstu2.1' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir</feature>
<feature version='${project.version}'>hapi-fhir-utilities</feature>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-structures-dstu2.1/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-dstu3' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir</feature>
<feature version='${project.version}'>hapi-fhir-utilities</feature>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-structures-dstu3/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-r4' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir</feature>
<feature version='${project.version}'>hapi-fhir-utilities</feature>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-structures-r4/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-ph-schematron' version='${project.version}' start-level='50'>
<bundle dependency='true'>
mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.saxon/${servicemix_saxon_version}
</bundle>
<bundle dependency='true'>
mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlresolver/${servicemix_xmlresolver_version}
</bundle>
<bundle dependency='true'>mvn:com.google.code.findbugs/jsr305/${jsr305_version}</bundle>
<bundle>mvn:com.phloc/phloc-schematron/${phloc_schematron_version}</bundle>
<bundle>mvn:com.phloc/phloc-commons/${phloc_commons_version}</bundle>
</feature>
<feature name='hapi-fhir-validation' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir</feature>
<feature version='${project.version}'>hapi-fhir-utilities</feature>
<feature version='${project.version}'>hapi-fhir-ph-schematron</feature>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-converter/${project.version}</bundle>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-validation/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-validation-dstu2' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir-validation</feature>
<feature version='${project.version}'>hapi-fhir-dstu2</feature>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-validation-resources-dstu2/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-validation-hl7org-dstu2' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir-validation</feature>
<feature version='${project.version}'>hapi-fhir-hl7org-dstu2</feature>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-validation-resources-dstu2/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-validation-dstu2.1' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir-validation</feature>
<feature version='${project.version}'>hapi-fhir-dstu2.1</feature>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-validation-resources-dstu2.1/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-validation-dstu3' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir-validation</feature>
<feature version='${project.version}'>hapi-fhir-dstu3</feature>
<feature version='${project.version}'>hapi-fhir-r4</feature>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-validation-resources-dstu3/${project.version}</bundle>
</feature>
<feature name='hapi-fhir-validation-r4' version='${project.version}' start-level='50'>
<feature version='${project.version}'>hapi-fhir-validation</feature>
<feature version='${project.version}'>hapi-fhir-r4</feature>
<bundle>mvn:ca.uhn.hapi.fhir/hapi-fhir-validation-resources-r4/${project.version}</bundle>
</feature>
</features>

176
hapi-fhir-karaf-integration-tests/pom.xml Normal file
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@ -0,0 +1,176 @@
<!--
Licensed to the Apache Software Foundation (ASF) under one or more
contributor license agreements. See the NOTICE file distributed with
this work for additional information regarding copyright ownership.
The ASF licenses this file to You under the Apache License, Version 2.0
(the "License"); you may not use this file except in compliance with
the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
-->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>3.3.0-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<artifactId>hapi-fhir-karaf-integration-tests</artifactId>
<packaging>jar</packaging>
<name>HAPI-FHIR Apache Karaf Integration Tests</name>
<description>
Integration tests for the HAPI-FHIR Apache Karaf features
</description>
<properties>
<pax.exam.version>4.9.1</pax.exam.version>
</properties>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2.1</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu2.1</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation</artifactId>
<version>${project.version}</version>
</dependency>
<!-- karaf test -->
<dependency>
<groupId>org.ops4j.pax.exam</groupId>
<artifactId>pax-exam-container-karaf</artifactId>
<version>${pax.exam.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.ops4j.pax.exam</groupId>
<artifactId>pax-exam-junit4</artifactId>
<version>${pax.exam.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.xmlunit</groupId>
<artifactId>xmlunit-core</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.karaf</groupId>
<artifactId>apache-karaf</artifactId>
<version>${apache_karaf_version}</version>
<scope>test</scope>
<type>tar.gz</type>
</dependency>
<dependency>
<groupId>org.apache.karaf.shell</groupId>
<artifactId>org.apache.karaf.shell.console</artifactId>
<version>${apache_karaf_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir.karaf</groupId>
<artifactId>hapi-fhir</artifactId>
<version>${project.version}</version>
<classifier>features</classifier>
<type>xml</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.karaf.features</groupId>
<artifactId>enterprise</artifactId>
<version>${apache_karaf_version}</version>
<classifier>features</classifier>
<type>xml</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.servicemix.bundles</groupId>
<artifactId>org.apache.servicemix.bundles.hamcrest</artifactId>
<version>1.3_1</version>
<scope>runtime</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.servicemix.tooling</groupId>
<artifactId>depends-maven-plugin</artifactId>
<version>1.2</version>
<executions>
<execution>
<id>generate-depends-file</id>
<goals>
<goal>generate-depends-file</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<forkCount>1</forkCount>
<reuseForks>false</reuseForks>
</configuration>
</plugin>
</plugins>
</build>
</project>

132
hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/PaxExamOptions.java Normal file
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@ -0,0 +1,132 @@
package ca.uhn.fhir.tests.integration.karaf;
import org.ops4j.pax.exam.Option;
import org.ops4j.pax.exam.karaf.options.LogLevelOption;
import org.ops4j.pax.exam.options.DefaultCompositeOption;
import java.io.File;
import static org.ops4j.pax.exam.CoreOptions.maven;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.configureConsole;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.karafDistributionConfiguration;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.keepRuntimeFolder;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.logLevel;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.features;
public enum PaxExamOptions {
KARAF(
karafDistributionConfiguration()
.frameworkUrl(
maven()
.groupId("org.apache.karaf")
.artifactId("apache-karaf")
.versionAsInProject()
.type("zip"))
.name("Apache Karaf")
.useDeployFolder(false)
.unpackDirectory(new File("target/paxexam/unpack/")),
keepRuntimeFolder(),
configureConsole().ignoreLocalConsole(),
logLevel(LogLevelOption.LogLevel.INFO)
),
WRAP(
features(
maven()
.groupId("org.apache.karaf.features")
.artifactId("enterprise")
.type("xml")
.classifier("features")
.versionAsInProject(),
"wrap")
),
HAPI_FHIR_HL7ORG_DSTU2(
features(
maven()
.groupId("ca.uhn.hapi.fhir.karaf")
.artifactId("hapi-fhir")
.type("xml")
.classifier("features")
.versionAsInProject(),
"hapi-fhir-hl7org-dstu2")
),
HAPI_FHIR_DSTU2_1(
features(
maven()
.groupId("ca.uhn.hapi.fhir.karaf")
.artifactId("hapi-fhir")
.type("xml")
.classifier("features")
.versionAsInProject(),
"hapi-fhir-dstu2.1")
),
HAPI_FHIR_DSTU3(
features(
maven()
.groupId("ca.uhn.hapi.fhir.karaf")
.artifactId("hapi-fhir")
.type("xml")
.classifier("features")
.versionAsInProject(),
"hapi-fhir-dstu3")
),
HAPI_FHIR_R4(
features(
maven()
.groupId("ca.uhn.hapi.fhir.karaf")
.artifactId("hapi-fhir")
.type("xml")
.classifier("features")
.versionAsInProject(),
"hapi-fhir-r4")
),
HAPI_FHIR_VALIDATION_DSTU2(
features(
maven()
.groupId("ca.uhn.hapi.fhir.karaf")
.artifactId("hapi-fhir")
.type("xml")
.classifier("features")
.versionAsInProject(),
"hapi-fhir-validation-dstu2")
),
HAPI_FHIR_VALIDATION_HL7ORG_DSTU2(
features(
maven()
.groupId("ca.uhn.hapi.fhir.karaf")
.artifactId("hapi-fhir")
.type("xml")
.classifier("features")
.versionAsInProject(),
"hapi-fhir-validation-hl7org-dstu2")
),
HAPI_FHIR_VALIDATION_DSTU3(
features(
maven()
.groupId("ca.uhn.hapi.fhir.karaf")
.artifactId("hapi-fhir")
.type("xml")
.classifier("features")
.versionAsInProject(),
"hapi-fhir-validation-dstu3")
),
HAPI_FHIR_VALIDATION_R4(
features(
maven()
.groupId("ca.uhn.hapi.fhir.karaf")
.artifactId("hapi-fhir")
.type("xml")
.classifier("features")
.versionAsInProject(),
"hapi-fhir-validation-r4")
);
private final Option[] options;
PaxExamOptions(Option... options) {
this.options = options;
}
public Option option() {
return new DefaultCompositeOption(options);
}
}

331
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package ca.uhn.fhir.tests.integration.karaf.dstu2;
import java.io.IOException;
import java.nio.charset.StandardCharsets;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Date;
import java.util.List;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.api.ExtensionDt;
import ca.uhn.fhir.model.api.ResourceMetadataKeyEnum;
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.model.dstu2.composite.CodeableConceptDt;
import ca.uhn.fhir.model.dstu2.composite.ResourceReferenceDt;
import ca.uhn.fhir.model.dstu2.resource.Bundle;
import ca.uhn.fhir.model.dstu2.resource.Condition;
import ca.uhn.fhir.model.dstu2.resource.OperationOutcome;
import ca.uhn.fhir.model.dstu2.resource.Patient;
import ca.uhn.fhir.model.dstu2.valueset.ConditionVerificationStatusEnum;
import ca.uhn.fhir.model.dstu2.valueset.NarrativeStatusEnum;
import ca.uhn.fhir.model.primitive.DateDt;
import ca.uhn.fhir.model.primitive.InstantDt;
import ca.uhn.fhir.model.primitive.StringDt;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.parser.StrictErrorHandler;
import ca.uhn.fhir.validation.FhirValidator;
import ca.uhn.fhir.validation.SchemaBaseValidator;
import ca.uhn.fhir.validation.ValidationFailureException;
import ca.uhn.fhir.validation.ValidationResult;
import ca.uhn.fhir.validation.schematron.SchematronBaseValidator;
import org.apache.commons.io.IOUtils;
import org.hamcrest.Matcher;
import org.hamcrest.Matchers;
import org.hamcrest.core.StringContains;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.ops4j.pax.exam.Configuration;
import org.ops4j.pax.exam.Option;
import org.ops4j.pax.exam.junit.PaxExam;
import org.ops4j.pax.exam.spi.reactors.ExamReactorStrategy;
import org.ops4j.pax.exam.spi.reactors.PerClass;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.HAPI_FHIR_VALIDATION_DSTU2;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.KARAF;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.WRAP;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.not;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import static org.ops4j.pax.exam.CoreOptions.mavenBundle;
import static org.ops4j.pax.exam.CoreOptions.options;
import static org.ops4j.pax.exam.CoreOptions.when;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.debugConfiguration;
/**
* Useful docs about this test: https://ops4j1.jira.com/wiki/display/paxexam/FAQ
*/
@RunWith(PaxExam.class)
@ExamReactorStrategy(PerClass.class)
public class Dstu2ResourceValidatorDstu2Test {
private FhirContext ourCtx = FhirContext.forDstu2();
private final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(Dstu2ResourceValidatorDstu2Test.class);
@Configuration
public Option[] config() throws IOException {
return options(
KARAF.option(),
WRAP.option(),
HAPI_FHIR_VALIDATION_DSTU2.option(),
mavenBundle().groupId("org.apache.servicemix.bundles").artifactId("org.apache.servicemix.bundles.hamcrest").versionAsInProject(),
when(false)
.useOptions(
debugConfiguration("5005", true))
);
}
private FhirValidator createFhirValidator() {
FhirValidator val = ourCtx.newValidator();
val.setValidateAgainstStandardSchema(true);
val.setValidateAgainstStandardSchematron(true);
return val;
}
private String logOperationOutcome(ValidationResult result) {
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
ourLog.info(encoded);
return encoded;
}
/**
* See issue #50
*/
@Test()
public void testOutOfBoundsDate() {
Patient p = new Patient();
p.setBirthDate(new DateDt("2000-12-31"));
// Put in an invalid date
IParser parser = ourCtx.newXmlParser();
parser.setParserErrorHandler(new StrictErrorHandler());
String encoded = parser.setPrettyPrint(true).encodeResourceToString(p).replace("2000-12-31", "2000-15-31");
ourLog.info(encoded);
assertThat(encoded, StringContains.containsString("2000-15-31"));
ValidationResult result = ourCtx.newValidator().validateWithResult(encoded);
String resultString = parser.setPrettyPrint(true).encodeResourceToString(result.toOperationOutcome());
ourLog.info(resultString);
assertEquals(2, ((OperationOutcome)result.toOperationOutcome()).getIssue().size());
assertThat(resultString, StringContains.containsString("cvc-pattern-valid"));
try {
parser.parseResource(encoded);
fail();
} catch (DataFormatException e) {
assertEquals("DataFormatException at [[row,col {unknown-source}]: [2,4]]: Invalid attribute value \"2000-15-31\": Invalid date/time format: \"2000-15-31\"", e.getMessage());
}
}
@Test
public void testSchemaBundleValidatorIsSuccessful() throws IOException {
String res = IOUtils.toString(getClass().getClassLoader().getResourceAsStream("bundle-example.json"), StandardCharsets.UTF_8);
Bundle b = ourCtx.newJsonParser().parseResource(Bundle.class, res);
ourLog.info(ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(b));
FhirValidator val = createFhirValidator();
ValidationResult result = val.validateWithResult(b);
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
assertTrue(result.toString(), result.isSuccessful());
assertNotNull(operationOutcome);
assertEquals(1, operationOutcome.getIssue().size());
}
@SuppressWarnings("deprecation")
@Test
public void testSchemaResourceValidator() throws IOException {
String res = IOUtils.toString(getClass().getClassLoader().getResourceAsStream("patient-example-dicom.json"));
Patient p = ourCtx.newJsonParser().parseResource(Patient.class, res);
ourLog.info(ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(p));
FhirValidator val = ourCtx.newValidator();
val.setValidateAgainstStandardSchema(true);
val.setValidateAgainstStandardSchematron(false);
val.validate(p);
p.getAnimal().getBreed().setText("The Breed");
try {
val.validate(p);
fail();
} catch (ValidationFailureException e) {
OperationOutcome operationOutcome = (OperationOutcome) e.getOperationOutcome();
ourLog.info(ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome));
assertEquals(1, operationOutcome.getIssue().size());
assertThat(operationOutcome.getIssueFirstRep().getDetailsElement().getValue(), containsString("cvc-complex-type"));
}
}
/**
* Make sure that the elements that appear in all resources (meta, language, extension, etc)
* all appear in the correct order
*/
@Test
public void testValidateResourceWithResourceElements() {
TestPatientFor327 patient = new TestPatientFor327();
patient.setBirthDate(new Date(), TemporalPrecisionEnum.DAY);
patient.setId("123");
patient.getText().setDiv("<div>FOO</div>");
patient.getText().setStatus(NarrativeStatusEnum.GENERATED);
patient.getLanguage().setValue("en");
patient.addUndeclaredExtension(true, "http://foo").setValue(new StringDt("MOD"));
ResourceMetadataKeyEnum.UPDATED.put(patient, new InstantDt(new Date()));
List<ResourceReferenceDt> conditions = new ArrayList<ResourceReferenceDt>();
Condition condition = new Condition();
condition.getPatient().setReference("Patient/123");
condition.addBodySite().setText("BODY SITE");
condition.getCode().setText("CODE");
condition.setVerificationStatus(ConditionVerificationStatusEnum.CONFIRMED);
conditions.add(new ResourceReferenceDt(condition));
patient.setCondition(conditions);
patient.addIdentifier().setSystem("http://foo").setValue("123");
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(patient);
ourLog.info(encoded);
FhirValidator val = createFhirValidator();
ValidationResult result = val.validateWithResult(encoded);
String messageString = logOperationOutcome(result);
assertTrue(result.isSuccessful());
assertThat(messageString, containsString("No issues"));
}
/**
* See
* https://groups.google.com/d/msgid/hapi-fhir/a266083f-6454-4cf0-a431-c6500f052bea%40googlegroups.com?utm_medium=
* email&utm_source=footer
*/
@Test
public void testValidateWithExtensionsJson() {
PatientProfileDstu2 myPatient = new PatientProfileDstu2();
myPatient.setColorPrimary(new CodeableConceptDt("http://example.com#animalColor", "furry-grey"));
myPatient.setColorSecondary(new CodeableConceptDt("http://example.com#animalColor", "furry-white"));
myPatient.setOwningOrganization(new ResourceReferenceDt("Organization/2.25.79433498044103547197447759549862032393"));
myPatient.addName().addFamily("FamilyName");
myPatient.addUndeclaredExtension(new ExtensionDt().setUrl("http://foo.com/example").setValue(new StringDt("String Extension")));
IParser p = FhirContext.forDstu2().newJsonParser().setPrettyPrint(true);
String messageString = p.encodeResourceToString(myPatient);
ourLog.info(messageString);
//@formatter:off
assertThat(messageString, stringContainsInOrder(
"meta",
"String Extension",
"Organization/2.25.79433498044103547197447759549862032393",
"furry-grey",
"furry-white",
"FamilyName"
));
assertThat(messageString, not(stringContainsInOrder(
"extension",
"meta"
)));
//@formatter:on
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
ValidationResult result = val.validateWithResult(messageString);
logOperationOutcome(result);
assertTrue(result.isSuccessful());
assertThat(messageString, containsString("valueReference"));
assertThat(messageString, not(containsString("valueResource")));
}
private Matcher<? super String> stringContainsInOrder(java.lang.String... substrings) {
return Matchers.stringContainsInOrder(Arrays.asList(substrings));
}
/**
* See
* https://groups.google.com/d/msgid/hapi-fhir/a266083f-6454-4cf0-a431-c6500f052bea%40googlegroups.com?utm_medium=
* email&utm_source=footer
*/
@Test
public void testValidateWithExtensionsXml() {
PatientProfileDstu2 myPatient = new PatientProfileDstu2();
myPatient.setColorPrimary(new CodeableConceptDt("http://example.com#animalColor", "furry-grey"));
myPatient.setColorSecondary(new CodeableConceptDt("http://example.com#animalColor", "furry-white"));
myPatient.setOwningOrganization(new ResourceReferenceDt("Organization/2.25.79433498044103547197447759549862032393"));
myPatient.addName().addFamily("FamilyName");
myPatient.addUndeclaredExtension(new ExtensionDt().setUrl("http://foo.com/example").setValue(new StringDt("String Extension")));
IParser p = FhirContext.forDstu2().newXmlParser().setPrettyPrint(true);
String messageString = p.encodeResourceToString(myPatient);
ourLog.info(messageString);
//@formatter:off
assertThat(messageString, stringContainsInOrder(
"meta",
"Organization/2.25.79433498044103547197447759549862032393",
"furry-grey",
"furry-white",
"String Extension",
"FamilyName"
));
assertThat(messageString, not(stringContainsInOrder(
"extension",
"meta"
)));
assertThat(messageString, containsString("url=\"http://ahr.copa.inso.tuwien.ac.at/StructureDefinition/Patient#animal-colorSecondary\""));
assertThat(messageString, containsString("url=\"http://foo.com/example\""));
//@formatter:on
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
ValidationResult result = val.validateWithResult(messageString);
logOperationOutcome(result);
assertTrue(result.isSuccessful());
assertThat(messageString, containsString("valueReference"));
assertThat(messageString, not(containsString("valueResource")));
}
@ResourceDef(name = "Patient")
public static class TestPatientFor327 extends Patient {
private static final long serialVersionUID = 1L;
@Child(name = "testCondition")
@ca.uhn.fhir.model.api.annotation.Extension(url = "testCondition", definedLocally = true, isModifier = false)
private List<ResourceReferenceDt> testConditions = null;
public List<ResourceReferenceDt> getConditions() {
return this.testConditions;
}
public void setCondition(List<ResourceReferenceDt> ref) {
this.testConditions = ref;
}
}
}

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package ca.uhn.fhir.tests.integration.karaf.dstu2;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.model.dstu2.composite.CodeableConceptDt;
import ca.uhn.fhir.model.dstu2.composite.ResourceReferenceDt;
import ca.uhn.fhir.model.dstu2.resource.Patient;
import ca.uhn.fhir.util.ElementUtil;
@ResourceDef(name="Patient", profile = "http://ahr.copa.inso.tuwien.ac.at/StructureDefinition/Patient")
public class PatientProfileDstu2 extends Patient {
private static final long serialVersionUID = 1L;
@Child(name="owner", min=0, max=1)
@Extension(url="http://ahr.copa.inso.tuwien.ac.at/StructureDefinition/Patient#owningOrganization", definedLocally=false, isModifier=false)
@Description(shortDefinition="The organization that owns this animal")
private ResourceReferenceDt owningOrganization;
public ResourceReferenceDt getOwningOrganization() {
if (owningOrganization == null) {
owningOrganization = new ResourceReferenceDt();
}
return owningOrganization;
}
public PatientProfileDstu2 setOwningOrganization(ResourceReferenceDt owningOrganization) {
this.owningOrganization = owningOrganization;
return this;
}
@Child(name="colorPrimary", min=0, max=1)
@Extension(url="http://ahr.copa.inso.tuwien.ac.at/StructureDefinition/Patient#animal-colorPrimary", definedLocally=false, isModifier=false)
@Description(shortDefinition="The animals primary color")
private CodeableConceptDt colorPrimary;
@Child(name="colorSecondary", min=0, max=1)
@Extension(url="http://ahr.copa.inso.tuwien.ac.at/StructureDefinition/Patient#animal-colorSecondary", definedLocally=false, isModifier=false)
@Description(shortDefinition="The animals secondary color")
private CodeableConceptDt colorSecondary;
public CodeableConceptDt getColorPrimary() {
if (this.colorPrimary == null) {
return new CodeableConceptDt();
}
return colorPrimary;
}
public void setColorPrimary(CodeableConceptDt colorPrimary) {
this.colorPrimary = colorPrimary;
}
public CodeableConceptDt getColorSecondary() {
if (this.colorSecondary == null) {
return new CodeableConceptDt();
}
return colorSecondary;
}
public void setColorSecondary(CodeableConceptDt colorSecondary) {
this.colorSecondary = colorSecondary;
}
@Override
public boolean isEmpty() {
return super.isEmpty() && ElementUtil.isEmpty(owningOrganization) && ElementUtil.isEmpty(colorPrimary)
&& ElementUtil.isEmpty(colorSecondary) ;
}
}

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package ca.uhn.fhir.tests.integration.karaf.dstu21;
import java.util.ArrayList;
import java.util.List;
import ca.uhn.fhir.model.api.annotation.Block;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.dstu2016may.model.Identifier;
import org.hl7.fhir.dstu2016may.model.Patient;
@ResourceDef(name = "Patient")
public class PatientWithExtendedContactDstu3 extends Patient {
private static final long serialVersionUID = 1L;
/**
* A contact party (e.g. guardian, partner, friend) for the patient.
*/
@Child(name = "contact", type = {}, order = Child.REPLACE_PARENT, min = 0, max = Child.MAX_UNLIMITED, modifier = false, summary = false)
@Description(shortDefinition = "A contact party (e.g. guardian, partner, friend) for the patient", formalDefinition = "A contact party (e.g. guardian, partner, friend) for the patient.")
protected List<CustomContactComponent> customContact;
public List<CustomContactComponent> getCustomContact() {
if (customContact == null) {
customContact = new ArrayList<CustomContactComponent>();
}
return customContact;
}
@Block()
public static class CustomContactComponent extends ContactComponent {
private static final long serialVersionUID = 1L;
@Child(name = "contact-eyecolour", type = { Identifier.class }, modifier = true)
@Description(shortDefinition = "Application ID")
@Extension(url = "http://foo.com/contact-eyecolour", definedLocally = false, isModifier = false)
private Identifier myEyeColour;
/*
* Get messageHeaderApplicationId
*/
public Identifier getEyeColour() {
if (myEyeColour == null) {
myEyeColour = new Identifier();
}
return myEyeColour;
}
/*
* Set messageHeaderApplicationId
*/
public void setEyeColour(Identifier messageHeaderApplicationId) {
this.myEyeColour = messageHeaderApplicationId;
}
}
}

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package ca.uhn.fhir.tests.integration.karaf.dstu2hl7org;
import java.io.IOException;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.validation.FhirValidator;
import ca.uhn.fhir.validation.ValidationResult;
import org.hl7.fhir.instance.hapi.validation.DefaultProfileValidationSupport;
import org.hl7.fhir.instance.hapi.validation.FhirInstanceValidator;
import org.hl7.fhir.instance.model.DateType;
import org.hl7.fhir.instance.model.Observation;
import org.hl7.fhir.instance.model.QuestionnaireResponse;
import org.hl7.fhir.instance.model.StringType;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.ops4j.pax.exam.Configuration;
import org.ops4j.pax.exam.Option;
import org.ops4j.pax.exam.junit.PaxExam;
import org.ops4j.pax.exam.spi.reactors.ExamReactorStrategy;
import org.ops4j.pax.exam.spi.reactors.PerClass;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.HAPI_FHIR_VALIDATION_HL7ORG_DSTU2;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.KARAF;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.WRAP;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.not;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.assertTrue;
import static org.ops4j.pax.exam.CoreOptions.mavenBundle;
import static org.ops4j.pax.exam.CoreOptions.options;
import static org.ops4j.pax.exam.CoreOptions.when;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.debugConfiguration;
/**
* Useful docs about this test: https://ops4j1.jira.com/wiki/display/paxexam/FAQ
*/
@RunWith(PaxExam.class)
@ExamReactorStrategy(PerClass.class)
public class FhirInstanceValidatorTest {
private FhirInstanceValidator ourValidator = new FhirInstanceValidator(new DefaultProfileValidationSupport());
private FhirContext ourCtxHl7OrgDstu2 = FhirContext.forDstu2Hl7Org();
private final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirInstanceValidatorTest.class);
@Configuration
public Option[] config() throws IOException {
return options(
KARAF.option(),
WRAP.option(),
HAPI_FHIR_VALIDATION_HL7ORG_DSTU2.option(),
mavenBundle().groupId("org.apache.servicemix.bundles").artifactId("org.apache.servicemix.bundles.hamcrest").versionAsInProject(),
when(false)
.useOptions(
debugConfiguration("5005", true))
);
}
@Test
public void testQuestionnaireResponse() {
QuestionnaireResponse qr = new QuestionnaireResponse();
qr.setStatus(QuestionnaireResponse.QuestionnaireResponseStatus.COMPLETED);
qr.getGroup().addGroup().addQuestion().setLinkId("foo");
qr.getGroup().addQuestion().setLinkId("bar");
FhirValidator val = ourCtxHl7OrgDstu2.newValidator();
val.registerValidatorModule(ourValidator);
ValidationResult result = val.validateWithResult(qr);
String encoded = ourCtxHl7OrgDstu2.newJsonParser().setPrettyPrint(true).encodeResourceToString(result.toOperationOutcome());
ourLog.info(encoded);
assertTrue(result.isSuccessful());
}
@Test
public void testObservation() {
Observation o = new Observation();
o.addIdentifier().setSystem("http://acme.org").setValue("1234");
o.setStatus(Observation.ObservationStatus.FINAL);
o.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
o.getEncounter().setReference("Encounter/1234");
FhirValidator val = ourCtxHl7OrgDstu2.newValidator();
val.registerValidatorModule(ourValidator);
ValidationResult result = val.validateWithResult(o);
String encoded = ourCtxHl7OrgDstu2.newJsonParser().setPrettyPrint(true).encodeResourceToString(result.toOperationOutcome());
ourLog.info(encoded);
assertTrue(result.isSuccessful());
}
@Test
public void testParametersWithTwoParameters() {
org.hl7.fhir.instance.model.Patient patient = new org.hl7.fhir.instance.model.Patient();
patient.addName().addGiven("James");
patient.setBirthDateElement(new DateType("2011-02-02"));
org.hl7.fhir.instance.model.Parameters input = new org.hl7.fhir.instance.model.Parameters();
input.addParameter().setName("mode").setValue(new StringType("create"));
input.addParameter().setName("resource").setResource(patient);
FhirValidator val = ourCtxHl7OrgDstu2.newValidator();
val.registerValidatorModule(ourValidator);
ValidationResult result = val.validateWithResult(input);
String encoded = ourCtxHl7OrgDstu2.newJsonParser().setPrettyPrint(true).encodeResourceToString(result.toOperationOutcome());
ourLog.info(encoded);
assertTrue(result.isSuccessful());
assertThat(encoded, not(containsString("A parameter must have a value or a resource, but not both")));
}
@Test
public void testParametersHl7OrgDstu2() {
org.hl7.fhir.instance.model.Patient patient = new org.hl7.fhir.instance.model.Patient();
patient.addName().addGiven("James");
patient.setBirthDateElement(new DateType("2011-02-02"));
org.hl7.fhir.instance.model.Parameters input = new org.hl7.fhir.instance.model.Parameters();
input.addParameter().setName("resource").setResource(patient);
FhirValidator val = ourCtxHl7OrgDstu2.newValidator();
val.registerValidatorModule(ourValidator);
ValidationResult result = val.validateWithResult(input);
ourLog.info(ourCtxHl7OrgDstu2.newJsonParser().setPrettyPrint(true).encodeResourceToString(result.toOperationOutcome()));
assertTrue(result.isSuccessful());
}
}

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hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu2hl7org/MyObservationWithExtensions.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu2hl7org;
import ca.uhn.fhir.model.api.annotation.Block;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.util.ElementUtil;
import org.hl7.fhir.instance.model.Attachment;
import org.hl7.fhir.instance.model.BackboneElement;
import org.hl7.fhir.instance.model.DateType;
import org.hl7.fhir.instance.model.Patient;
import org.hl7.fhir.instance.model.StringType;
import org.hl7.fhir.instance.model.api.IBaseBackboneElement;
@ResourceDef(name="Patient")
public class MyObservationWithExtensions extends Patient {
@Extension(url = "urn:patientext:att", definedLocally = false, isModifier = false)
@Child(name = "extAtt", order = 0)
private Attachment myExtAtt;
@Extension(url = "urn:patientext:moreext", definedLocally = false, isModifier = false)
@Child(name = "moreExt", order = 1)
private MoreExt myMoreExt;
@Extension(url = "urn:modext", definedLocally = false, isModifier = true)
@Child(name = "modExt", order = 2)
private DateType myModExt;
public Attachment getExtAtt() {
return myExtAtt;
}
public MoreExt getMoreExt() {
return myMoreExt;
}
public void setMoreExt(MoreExt theMoreExt) {
myMoreExt = theMoreExt;
}
public DateType getModExt() {
return myModExt;
}
public void setModExt(DateType theModExt) {
myModExt = theModExt;
}
public void setExtAtt(Attachment theExtAtt) {
myExtAtt = theExtAtt;
}
@Override
public boolean isEmpty() {
return super.isEmpty() && ElementUtil.isEmpty(myExtAtt, myModExt, myMoreExt);
}
/**
* Block class for child element: <b>Observation.referenceRange</b> (Provides guide for interpretation)
*
* <p>
* <b>Definition:</b> Guidance on how to interpret the value by comparison to a normal or recommended range
* </p>
*/
@Block(name = "Observation.someExtensions")
public static class MoreExt extends BackboneElement implements IBaseBackboneElement {
@Extension(url = "urn:patientext:moreext:1", definedLocally = false, isModifier = false)
@Child(name = "str1", order = 0)
private StringType myStr1;
@Extension(url = "urn:patientext:moreext:2", definedLocally = false, isModifier = false)
@Child(name = "str2", order = 1)
private StringType myStr2;
public StringType getStr1() {
return myStr1;
}
public void setStr1(StringType theStr1) {
myStr1 = theStr1;
}
public StringType getStr2() {
return myStr2;
}
public void setStr2(StringType theStr2) {
myStr2 = theStr2;
}
@Override
public boolean isEmpty() {
return ElementUtil.isEmpty(myStr1, myStr2);
}
@Override
public BackboneElement copy() {
throw new UnsupportedOperationException();
}
}
}

11
hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu2hl7org/MyOrganizationDstu2.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu2hl7org;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.instance.model.Organization;
@ResourceDef()
public class MyOrganizationDstu2 extends Organization {
private static final long serialVersionUID = 1L;
}

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hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu2hl7org/MyPatientHl7Org.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu2hl7org;
import java.util.ArrayList;
import java.util.List;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.instance.model.DateTimeType;
import org.hl7.fhir.instance.model.Patient;
import org.hl7.fhir.instance.model.Reference;
import org.hl7.fhir.instance.model.StringType;
@ResourceDef()
public class MyPatientHl7Org extends Patient {
private static final long serialVersionUID = 1L;
@Child(name="petName")
@Extension(url="http://example.com/dontuse#petname", definedLocally=false, isModifier=false)
@Description(shortDefinition="The name of the patient's favourite pet")
private StringType myPetName;
@Child(name="importantDates", max=Child.MAX_UNLIMITED)
@Extension(url="http://example.com/dontuse#importantDates", definedLocally=false, isModifier=true)
@Description(shortDefinition="Some dates of note for the patient")
private List<DateTimeType> myImportantDates;
@Child(name="managingOrganization", order=Child.REPLACE_PARENT, min=0, max=1, type={
MyOrganizationDstu2.class })
@Description(
shortDefinition="Organization that is the custodian of the patient record",
formalDefinition="Organization that is the custodian of the patient record"
)
private Reference myManagingOrganization;
@Override
public boolean isEmpty() {
return super.isEmpty() && myPetName.isEmpty();
}
public List<DateTimeType> getImportantDates() {
if (myImportantDates==null) {
myImportantDates = new ArrayList<DateTimeType>();
}
return myImportantDates;
}
public StringType getPetName() {
return myPetName;
}
public void setImportantDates(List<DateTimeType> theImportantDates) {
myImportantDates = theImportantDates;
}
public void setPetName(StringType thePetName) {
myPetName = thePetName;
}
}

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hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu2hl7org/MyPatientWithOneDeclaredEnumerationExtension.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu2hl7org;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.instance.model.Address.AddressUse;
import org.hl7.fhir.instance.model.Enumeration;
import org.hl7.fhir.instance.model.Patient;
@ResourceDef(name = "Patient")
public class MyPatientWithOneDeclaredEnumerationExtension extends Patient {
private static final long serialVersionUID = 1L;
@Child(order = 0, name = "foo")
@ca.uhn.fhir.model.api.annotation.Extension(url = "urn:foo", definedLocally = true, isModifier = false)
private Enumeration<AddressUse> myFoo;
public Enumeration<AddressUse> getFoo() {
return myFoo;
}
public void setFoo(Enumeration<AddressUse> theFoo) {
myFoo = theFoo;
}
}

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package ca.uhn.fhir.tests.integration.karaf.dstu2hl7org;
import java.util.List;
import ca.uhn.fhir.model.api.annotation.Block;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.instance.model.BackboneElement;
import org.hl7.fhir.instance.model.CodeableConcept;
import org.hl7.fhir.instance.model.DateType;
import org.hl7.fhir.instance.model.DomainResource;
import org.hl7.fhir.instance.model.Identifier;
import org.hl7.fhir.instance.model.ResourceType;
import org.hl7.fhir.instance.model.StringType;
@ResourceDef(name = "ResourceWithExtensionsA", id="0001")
public class ResourceWithExtensionsA extends DomainResource {
/*
* NB: several unit tests depend on the structure here
* so check the unit tests immediately after any changes
*/
private static final long serialVersionUID = 1L;
@Child(name = "foo1", type = StringType.class, order = 0, min = 0, max = Child.MAX_UNLIMITED)
@Extension(url = "http://foo/#f1", definedLocally=true, isModifier=false)
private List<StringType> myFoo1;
@Child(name = "foo2", type = StringType.class, order = 1, min = 0, max = 1)
@Extension(url = "http://foo/#f2", definedLocally=true, isModifier=true)
private StringType myFoo2;
@Child(name = "bar1", type = Bar1.class, order = 2, min = 1, max = Child.MAX_UNLIMITED)
@Extension(url = "http://bar/#b1", definedLocally=true, isModifier=false)
private List<Bar1> myBar1;
@Child(name = "bar2", type = Bar1.class, order = 3, min = 1, max = Child.MAX_UNLIMITED)
@Extension(url = "http://bar/#b2", definedLocally=true, isModifier=false)
private Bar1 myBar2;
@Child(name="baz", type = CodeableConcept.class, order = 4)
@Extension(url= "http://baz/#baz", definedLocally=true, isModifier=false)
@Description(shortDefinition = "Contains a codeable concept")
private CodeableConcept myBaz;
@Child(name = "identifier", type = Identifier.class, order = 0, min = 0, max = Child.MAX_UNLIMITED)
private List<Identifier> myIdentifier;
public List<Bar1> getBar1() {
return myBar1;
}
public Bar1 getBar2() {
return myBar2;
}
public List<StringType> getFoo1() {
return myFoo1;
}
public StringType getFoo2() {
return myFoo2;
}
public CodeableConcept getBaz() { return myBaz; }
public List<Identifier> getIdentifier() {
return myIdentifier;
}
public void setBar1(List<Bar1> theBar1) {
myBar1 = theBar1;
}
public void setBar2(Bar1 theBar2) {
myBar2 = theBar2;
}
public void setFoo1(List<StringType> theFoo1) {
myFoo1 = theFoo1;
}
public void setFoo2(StringType theFoo2) {
myFoo2 = theFoo2;
}
public void setBaz(CodeableConcept myBaz) { this.myBaz = myBaz; }
public void setIdentifier(List<Identifier> theValue) {
myIdentifier = theValue;
}
@Block(name = "Bar1")
public static class Bar1 extends BackboneElement {
public Bar1() {
super();
}
@Child(name = "bar11", type = DateType.class, order = 0, min = 0, max = Child.MAX_UNLIMITED)
@Extension(url = "http://bar/#b1/1", definedLocally=true, isModifier=false)
private List<DateType> myBar11;
@Child(name = "bar12", type = DateType.class, order = 1, min = 0, max = Child.MAX_UNLIMITED)
@Extension(url = "http://bar/#b1/2", definedLocally=true, isModifier=false)
private List<Bar2> myBar12;
@Override
public boolean isEmpty() {
return false; // not implemented
}
public List<DateType> getBar11() {
return myBar11;
}
public List<Bar2> getBar12() {
return myBar12;
}
public void setBar11(List<DateType> theBar11) {
myBar11 = theBar11;
}
public void setBar12(List<Bar2> theBar12) {
myBar12 = theBar12;
}
@Override
public BackboneElement copy() {
// TODO Auto-generated method stub
return null;
}
}
@Block(name = "Bar2")
public static class Bar2 extends BackboneElement {
@Child(name = "bar121", type = DateType.class, order = 0, min = 0, max = Child.MAX_UNLIMITED)
@Extension(url = "http://bar/#b1/2/1", definedLocally=true, isModifier=false)
private List<DateType> myBar121;
@Child(name = "bar122", type = DateType.class, order = 1, min = 0, max = Child.MAX_UNLIMITED)
@Extension(url = "http://bar/#b1/2/2", definedLocally=true, isModifier=false)
private List<DateType> myBar122;
@Override
public boolean isEmpty() {
return false; // not implemented
}
public List<DateType> getBar121() {
return myBar121;
}
public List<DateType> getBar122() {
return myBar122;
}
public void setBar121(List<DateType> theBar121) {
myBar121 = theBar121;
}
public void setBar122(List<DateType> theBar122) {
myBar122 = theBar122;
}
@Override
public BackboneElement copy() {
// TODO Auto-generated method stub
return null;
}
}
@Override
public boolean isEmpty() {
return false; // not implemented
}
@Override
public DomainResource copy() {
// TODO Auto-generated method stub
return null;
}
@Override
public ResourceType getResourceType() {
// TODO Auto-generated method stub
return null;
}
}

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hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu3/CustomDiagnosticReport.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu3;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.dstu3.model.DiagnosticReport;
@ResourceDef(name = "DiagnosticReport", profile = CustomDiagnosticReport.PROFILE)
public class CustomDiagnosticReport extends DiagnosticReport {
public static final String PROFILE = "http://custom_DiagnosticReport";
private static final long serialVersionUID = 1L;
}

13
hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu3/CustomObservation.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu3;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.dstu3.model.Observation;
@ResourceDef(name = "Observation", profile = CustomObservation.PROFILE)
public class CustomObservation extends Observation {
public static final String PROFILE = "http://custom_Observation";
private static final long serialVersionUID = 1L;
}

29
hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu3/CustomPatientDstu3.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu3;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.dstu3.model.BooleanType;
import org.hl7.fhir.dstu3.model.Patient;
@ResourceDef(name = "Patient", profile = "Patient")
public class CustomPatientDstu3 extends Patient {
private static final long serialVersionUID = 1L;
@Child(name = "homeless", order = 1)
@Extension(url = "/StructureDefinition/homeless", definedLocally = true, isModifier = false)
@Description(shortDefinition = "The patient being homeless, true if homeless")
private BooleanType homeless;
public BooleanType getHomeless() {
return homeless;
}
public void setHomeless(final BooleanType homeless) {
this.homeless = homeless;
}
}

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hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu3/Dstu3JsonParserTest.java Normal file
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hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu3/Dstu3XmlParserTest.java Normal file
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hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu3/FooMessageHeader.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu3;
import ca.uhn.fhir.model.api.annotation.Block;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.dstu3.model.Identifier;
import org.hl7.fhir.dstu3.model.MessageHeader;
import org.hl7.fhir.exceptions.FHIRException;
@ResourceDef(name = "MessageHeader")
public class FooMessageHeader extends MessageHeader {
private static final long serialVersionUID = 1L;
@Block()
public static class FooMessageSourceComponent extends MessageSourceComponent {
private static final long serialVersionUID = 1L;
@Child(name = "ext-messageheader-application-id", type = Identifier.class, modifier = true)
@Description(shortDefinition = "Message Header Application ID")
@Extension(url = "http://foo", definedLocally = false, isModifier = false)
private Identifier messageHeaderApplicationId;
/*
* Get messageHeaderApplicationId
*/
public Identifier getMessageHeaderApplicationId() throws FHIRException {
if (messageHeaderApplicationId == null) {
messageHeaderApplicationId = new Identifier();
}
return messageHeaderApplicationId;
}
/*
* Set messageHeaderApplicationId
*/
public void setmessageHeaderApplicationId(Identifier messageHeaderApplicationId) {
this.messageHeaderApplicationId = messageHeaderApplicationId;
}
}
}

57
hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu3/FooMessageHeaderWithExplicitField.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu3;
import ca.uhn.fhir.model.api.annotation.Block;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.dstu3.model.Identifier;
import org.hl7.fhir.dstu3.model.MessageHeader;
import org.hl7.fhir.exceptions.FHIRException;
@ResourceDef(name = "FooMessageHeader")
public class FooMessageHeaderWithExplicitField extends MessageHeader {
private static final long serialVersionUID = 1L;
/**
* The source application from which this message originated.
*/
@Child(name = "source", type = {}, order = Child.REPLACE_PARENT, min = 1, max = 1, modifier = false, summary = true)
@Description(shortDefinition = "Message Source Application", formalDefinition = "The source application from which this message originated.")
protected FooMessageSourceComponent source;
public void setSourceNew(FooMessageSourceComponent theSource) {
source = theSource;
}
@Block()
public static class FooMessageSourceComponent extends MessageSourceComponent {
private static final long serialVersionUID = 1L;
@Child(name = "ext-messageheader-application-id", type = Identifier.class, modifier = true)
@Description(shortDefinition = "Message Header Application ID")
@Extension(url = "http://foo", definedLocally = false, isModifier = false)
private Identifier messageHeaderApplicationId;
/*
* Get messageHeaderApplicationId
*/
public Identifier getMessageHeaderApplicationId() throws FHIRException {
if (messageHeaderApplicationId == null) {
messageHeaderApplicationId = new Identifier();
}
return messageHeaderApplicationId;
}
/*
* Set messageHeaderApplicationId
*/
public void setmessageHeaderApplicationId(Identifier messageHeaderApplicationId) {
this.messageHeaderApplicationId = messageHeaderApplicationId;
}
}
}

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hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu3/MyPatientWithCustomUrlExtension.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu3;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.dstu3.model.IdType;
import org.hl7.fhir.dstu3.model.Patient;
import org.hl7.fhir.dstu3.model.StringType;
@ResourceDef()
public class MyPatientWithCustomUrlExtension extends Patient {
private static final long serialVersionUID = 1L;
@Child(name = "petName")
@Extension(url = "/petname", definedLocally = false, isModifier = false)
@Description(shortDefinition = "The name of the patient's favourite pet")
private StringType myPetName;
@Child(name = "customid")
@Extension(url = "/customid", definedLocally = false, isModifier = false)
@Description(shortDefinition = "The customid of the patient's ")
private IdType myCustomId;
public StringType getPetName() {
if (myPetName == null) {
myPetName = new StringType();
}
return myPetName;
}
public void setPetName(final StringType thePetName) {
myPetName = thePetName;
}
@Override
public boolean isEmpty() {
return super.isEmpty() && getCustomId().isEmpty() && getPetName().isEmpty();
}
public IdType getCustomId() {
if (myCustomId == null) {
myCustomId = new IdType();
}
return myCustomId;
}
public void setCustomId(final IdType myCustomId) {
this.myCustomId = myCustomId;
}
}

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hapi-fhir-karaf-integration-tests/src/test/java/ca/uhn/fhir/tests/integration/karaf/dstu3/MyPatientWithOneDeclaredEnumerationExtensionDstu3.java Normal file
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package ca.uhn.fhir.tests.integration.karaf.dstu3;
import java.util.List;
import ca.uhn.fhir.model.api.annotation.Block;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import org.hl7.fhir.dstu3.model.Address.AddressUse;
import org.hl7.fhir.dstu3.model.Enumeration;
import org.hl7.fhir.dstu3.model.Identifier;
import org.hl7.fhir.dstu3.model.Patient;
@ResourceDef(name = "Patient")
public class MyPatientWithOneDeclaredEnumerationExtensionDstu3 extends Patient {
private static final long serialVersionUID = 1L;
@Child(order = 0, name = "foo")
@Extension(url = "urn:foo", definedLocally = true, isModifier = false)
private Enumeration<AddressUse> myFoo;
/**
* A contact party (e.g. guardian, partner, friend) for the patient.
*/
@Child(name = "contact", type = {}, order=Child.REPLACE_PARENT, min=0, max=Child.MAX_UNLIMITED, modifier=false, summary=false)
@Description(shortDefinition="A contact party (e.g. guardian, partner, friend) for the patient", formalDefinition="A contact party (e.g. guardian, partner, friend) for the patient." )
protected List<ContactComponent> contact;
public Enumeration<AddressUse> getFoo() {
return myFoo;
}
public void setFoo(Enumeration<AddressUse> theFoo) {
myFoo = theFoo;
}
@Block()
public static class MessageSourceComponent extends ContactComponent {
private static final long serialVersionUID = 1L;
@Child(name = "contact-eyecolour", type = { Identifier.class }, modifier = true)
@Description(shortDefinition = "Application ID")
@Extension(url = "http://foo.com/contact-eyecolour", definedLocally = false, isModifier = false)
private Identifier myEyeColour;
/*
* Get messageHeaderApplicationId
*/
public Identifier getEyeColour() {
if (myEyeColour == null) {
myEyeColour = new Identifier();
}
return myEyeColour;
}
/*
* Set messageHeaderApplicationId
*/
public void setEyeColour(Identifier messageHeaderApplicationId) {
this.myEyeColour = messageHeaderApplicationId;
}
}
}

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package ca.uhn.fhir.tests.integration.karaf.dstu3;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.util.ElementUtil;
import org.hl7.fhir.dstu3.model.CodeableConcept;
import org.hl7.fhir.dstu3.model.Patient;
import org.hl7.fhir.dstu3.model.Reference;
@ResourceDef(name="Patient", profile = "http://hl7.org/fhir/StructureDefinition/Patient")
public class PatientProfileDstu3 extends Patient {
private static final long serialVersionUID = 1L;
@Child(name="owner", min=0, max=1)
@Extension(url="http://ahr.copa.inso.tuwien.ac.at/StructureDefinition/Patient#owningOrganization", definedLocally=false, isModifier=false)
@Description(shortDefinition="The organization that owns this animal")
private Reference owningOrganization;
public Reference getOwningOrganization() {
if (owningOrganization == null) {
owningOrganization = new Reference();
}
return owningOrganization;
}
public PatientProfileDstu3 setOwningOrganization(Reference owningOrganization) {
this.owningOrganization = owningOrganization;
return this;
}
@Child(name="colorPrimary", min=0, max=1)
@Extension(url="http://ahr.copa.inso.tuwien.ac.at/StructureDefinition/Patient#animal-colorPrimary", definedLocally=false, isModifier=false)
@Description(shortDefinition="The animals primary color")
private CodeableConcept colorPrimary;
@Child(name="colorSecondary", min=0, max=1)
@Extension(url="http://ahr.copa.inso.tuwien.ac.at/StructureDefinition/Patient#animal-colorSecondary", definedLocally=false, isModifier=false)
@Description(shortDefinition="The animals secondary color")
private CodeableConcept colorSecondary;
public CodeableConcept getColorPrimary() {
if (this.colorPrimary == null) {
return new CodeableConcept();
}
return colorPrimary;
}
public void setColorPrimary(CodeableConcept colorPrimary) {
this.colorPrimary = colorPrimary;
}
public CodeableConcept getColorSecondary() {
if (this.colorSecondary == null) {
return new CodeableConcept();
}
return colorSecondary;
}
public void setColorSecondary(CodeableConcept colorSecondary) {
this.colorSecondary = colorSecondary;
}
@Override
public boolean isEmpty() {
return super.isEmpty() && ElementUtil.isEmpty(owningOrganization) && ElementUtil.isEmpty(colorPrimary)
&& ElementUtil.isEmpty(colorSecondary) ;
}
}

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package ca.uhn.fhir.tests.integration.karaf.dstu3;
import ca.uhn.fhir.model.api.annotation.Block;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.util.ElementUtil;
import org.hl7.fhir.dstu3.model.BackboneElement;
import org.hl7.fhir.dstu3.model.Patient;
import org.hl7.fhir.dstu3.model.StringType;
@ResourceDef(name = "Patient")
public class PatientWithCustomCompositeExtension extends Patient {
private static final long serialVersionUID = 1L;
/**
* A custom extension
*/
@Child(name = "foo")
@Extension(url="http://acme.org/fooParent", definedLocally = false, isModifier = false)
protected FooParentExtension fooParentExtension;
public FooParentExtension getFooParentExtension() {
return fooParentExtension;
}
@Override
public boolean isEmpty() {
return super.isEmpty() && ElementUtil.isEmpty(fooParentExtension);
}
public void setFooParentExtension(FooParentExtension theFooParentExtension) {
fooParentExtension = theFooParentExtension;
}
@Block
public static class FooParentExtension extends BackboneElement {
private static final long serialVersionUID = 4522090347756045145L;
@Child(name = "childA")
@Extension(url = "http://acme.org/fooChildA", definedLocally = false, isModifier = false)
private StringType myChildA;
@Child(name = "childB")
@Extension(url = "http://acme.org/fooChildB", definedLocally = false, isModifier = false)
private StringType myChildB;
@Override
public FooParentExtension copy() {
FooParentExtension copy = new FooParentExtension();
copy.myChildA = myChildA;
copy.myChildB = myChildB;
return copy;
}
@Override
public boolean isEmpty() {
return super.isEmpty() && ElementUtil.isEmpty(myChildA, myChildB);
}
public StringType getChildA() {
return myChildA;
}
public StringType getChildB() {
return myChildB;
}
public void setChildA(StringType theChildA) {
myChildA = theChildA;
}
public void setChildB(StringType theChildB) {
myChildB = theChildB;
}
}
}

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package ca.uhn.fhir.tests.integration.karaf.dstu3;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.parser.StrictErrorHandler;
import ca.uhn.fhir.validation.*;
import ca.uhn.fhir.validation.schematron.SchematronBaseValidator;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.Validate;
import org.hamcrest.core.StringContains;
import org.hl7.fhir.dstu3.conformance.ProfileUtilities;
import org.hl7.fhir.dstu3.context.IWorkerContext;
import org.hl7.fhir.dstu3.hapi.ctx.HapiWorkerContext;
import org.hl7.fhir.dstu3.hapi.validation.DefaultProfileValidationSupport;
import org.hl7.fhir.dstu3.hapi.validation.FhirInstanceValidator;
import org.hl7.fhir.dstu3.model.*;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.ops4j.pax.exam.Configuration;
import org.ops4j.pax.exam.Option;
import org.ops4j.pax.exam.junit.PaxExam;
import org.ops4j.pax.exam.spi.reactors.ExamReactorStrategy;
import org.ops4j.pax.exam.spi.reactors.PerClass;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Date;
import java.util.List;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.HAPI_FHIR_VALIDATION_DSTU3;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.KARAF;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.WRAP;
import static org.hamcrest.Matchers.*;
import static org.junit.Assert.*;
import static org.ops4j.pax.exam.CoreOptions.mavenBundle;
import static org.ops4j.pax.exam.CoreOptions.options;
import static org.ops4j.pax.exam.CoreOptions.when;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.debugConfiguration;
/**
* Useful docs about this test: https://ops4j1.jira.com/wiki/display/paxexam/FAQ
*/
@RunWith(PaxExam.class)
@ExamReactorStrategy(PerClass.class)
public class ResourceValidatorDstu3FeatureTest {
private final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ResourceValidatorDstu3FeatureTest.class);
private FhirContext ourCtx = FhirContext.forDstu3();
@Configuration
public Option[] config() throws IOException {
return options(
KARAF.option(),
HAPI_FHIR_VALIDATION_DSTU3.option(),
mavenBundle().groupId("org.apache.servicemix.bundles").artifactId("org.apache.servicemix.bundles.hamcrest").versionAsInProject(),
WRAP.option(),
when(false)
.useOptions(
debugConfiguration("5005", true))
);
}
private List<SingleValidationMessage> logResultsAndReturnNonInformationalOnes(ValidationResult theOutput) {
List<SingleValidationMessage> retVal = new ArrayList<>();
int index = 0;
for (SingleValidationMessage next : theOutput.getMessages()) {
ourLog.info("Result {}: {} - {} - {}",
new Object[]{index, next.getSeverity(), next.getLocationString(), next.getMessage()});
index++;
if (next.getSeverity() != ResultSeverityEnum.INFORMATION) {
retVal.add(next);
}
}
return retVal;
}
/**
* See issue #50
*/
@Test
public void testOutOfBoundsDate() {
Patient p = new Patient();
p.setBirthDateElement(new DateType("2000-12-31"));
// Put in an invalid date
IParser parser = ourCtx.newXmlParser();
parser.setParserErrorHandler(new StrictErrorHandler());
String encoded = parser.setPrettyPrint(true).encodeResourceToString(p).replace("2000-12-31", "2000-15-31");
ourLog.info(encoded);
assertThat(encoded, StringContains.containsString("2000-15-31"));
ValidationResult result = ourCtx.newValidator().validateWithResult(encoded);
String resultString = parser.setPrettyPrint(true).encodeResourceToString(result.toOperationOutcome());
ourLog.info(resultString);
assertEquals(2, ((OperationOutcome) result.toOperationOutcome()).getIssue().size());
assertThat(resultString, StringContains.containsString("cvc-pattern-valid"));
try {
parser.parseResource(encoded);
fail();
} catch (DataFormatException e) {
assertEquals("DataFormatException at [[row,col {unknown-source}]: [2,4]]: Invalid attribute value \"2000-15-31\": Invalid date/time format: \"2000-15-31\"", e.getMessage());
}
}
@Test
public void testValidateCareTeamXsd() {
CareTeam careTeam = new CareTeam();
careTeam
.addParticipant()
.setMember(new Reference("http://example.com/Practitioner/1647bbb2-3b12-43cc-923c-a475f817e881"))
.setOnBehalfOf(new Reference("Organization/5859a28f-01e7-42d8-a8ba-48b31679a828"));
IParser parser = ourCtx.newXmlParser().setPrettyPrint(true);
String encoded = parser.encodeResourceToString(careTeam);
ourLog.info(encoded);
FhirValidator val = ourCtx.newValidator();
ValidationResult result = val.validateWithResult(encoded);
String resultString = parser.setPrettyPrint(true).encodeResourceToString(result.toOperationOutcome());
ourLog.info(resultString);
assertThat(resultString, containsString("No issues detected during validation"));
}
@Test
public void testValidateCodeableConceptContainingOnlyBadCode() {
Patient p = new Patient();
p.getMaritalStatus().addCoding().setSystem("http://hl7.org/fhir/v3/MaritalStatus").setCode("FOO");
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult output = val.validateWithResult(p);
List<SingleValidationMessage> all = logResultsAndReturnNonInformationalOnes(output);
assertEquals("None of the codes provided are in the value set http://hl7.org/fhir/ValueSet/marital-status (http://hl7.org/fhir/ValueSet/marital-status, and a code should come from this value set unless it has no suitable code) (codes = http://hl7.org/fhir/v3/MaritalStatus#FOO)", output.getMessages().get(0).getMessage());
assertEquals(ResultSeverityEnum.WARNING, output.getMessages().get(0).getSeverity());
}
@Test
public void testValidateCodeableConceptContainingOnlyGoodCode() {
Patient p = new Patient();
p.getMaritalStatus().addCoding().setSystem("http://hl7.org/fhir/v3/MaritalStatus").setCode("M");
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult output = val.validateWithResult(p);
List<SingleValidationMessage> all = logResultsAndReturnNonInformationalOnes(output);
assertEquals(0, all.size());
assertEquals(0, output.getMessages().size());
}
@Test
public void testValidateJsonNumericId() {
String input = "{\"resourceType\": \"Patient\",\n" +
" \"id\": 123,\n" +
" \"meta\": {\n" +
" \"versionId\": \"29\",\n" +
" \"lastUpdated\": \"2015-12-22T19:53:11.000Z\"\n" +
" },\n" +
" \"communication\": {\n" +
" \"language\": {\n" +
" \"coding\": [\n" +
" {\n" +
" \"system\": \"urn:ietf:bcp:47\",\n" +
" \"code\": \"hi\",\n" +
" \"display\": \"Hindi\",\n" +
" \"userSelected\": false\n" +
" }],\n" +
" \"text\": \"Hindi\"\n" +
" },\n" +
" \"preferred\": true\n" +
" }\n" +
"}";
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult output = val.validateWithResult(input);
OperationOutcome operationOutcome = (OperationOutcome) output.toOperationOutcome();
String encoded = ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
// ourLog.info(encoded);
assertThat(encoded, containsString("Error parsing JSON: the primitive value must be a string"));
}
@Test
public void testValidateQuestionnaireWithCanonicalUrl() {
String input = "{\n" +
" \"resourceType\": \"Questionnaire\",\n" +
" \"url\": \"http://some.example.url\",\n" +
" \"status\": \"active\",\n" +
" \"subjectType\": [\n" +
" \"Patient\"\n" +
" ],\n" +
" \"item\": [\n" +
" {\n" +
" \"linkId\": \"example-question\",\n" +
" \"text\": \"Is the sky blue?\",\n" +
" \"type\": \"choice\",\n" +
" \"options\": {\n" +
" \"reference\": \"http://loinc.org/vs/LL3044-6\"\n" +
" }\n" +
" }\n" +
" ]\n" +
"}";
Questionnaire q = new Questionnaire();
q = ourCtx.newJsonParser().parseResource(Questionnaire.class, input);
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult result = val.validateWithResult(q);
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
ourLog.info(encoded);
}
/**
* Make sure that the elements that appear in all resources (meta, language, extension, etc) all appear in the correct order
*/
@Test
public void testValidateResourceWithResourceElements() {
TestPatientFor327 patient = new TestPatientFor327();
patient.setBirthDate(new Date());
patient.setId("123");
patient.getText().setDivAsString("<div>FOO</div>");
patient.getText().setStatus(Narrative.NarrativeStatus.GENERATED);
patient.getLanguageElement().setValue("en");
patient.addExtension().setUrl("http://foo").setValue(new StringType("MOD"));
patient.getMeta().setLastUpdated(new Date());
List<Reference> conditions = new ArrayList<Reference>();
Condition condition = new Condition();
condition.getSubject().setReference("Patient/123");
condition.addBodySite().setText("BODY SITE");
condition.getCode().setText("CODE");
condition.setClinicalStatus(Condition.ConditionClinicalStatus.ACTIVE);
condition.setVerificationStatus(Condition.ConditionVerificationStatus.CONFIRMED);
conditions.add(new Reference(condition));
patient.setCondition(conditions);
patient.addIdentifier().setSystem("http://foo").setValue("123");
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(patient);
ourLog.info(encoded);
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult result = val.validateWithResult(encoded);
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
String ooencoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
ourLog.info(ooencoded);
assertTrue(result.isSuccessful());
assertThat(ooencoded, containsString("Unknown extension http://foo"));
}
/**
* See https://groups.google.com/d/msgid/hapi-fhir/a266083f-6454-4cf0-a431-c6500f052bea%40googlegroups.com?utm_medium= email&utm_source=footer
*/
@Test
public void testValidateWithExtensionsJson() {
PatientProfileDstu3 myPatient = new PatientProfileDstu3();
myPatient.setId("1");
myPatient.setColorPrimary(new CodeableConcept().addCoding(new Coding().setSystem("http://example.com#animalColor").setCode("furry-grey")));
myPatient.setColorSecondary(new CodeableConcept().addCoding(new Coding().setSystem("http://example.com#animalColor").setCode("furry-white")));
myPatient.setOwningOrganization(new Reference("Organization/2.25.79433498044103547197447759549862032393"));
myPatient.addName().setFamily("FamilyName");
myPatient.addExtension().setUrl("http://foo.com/example").setValue(new StringType("String Extension"));
IParser p = ourCtx.newJsonParser().setPrettyPrint(true);
String messageString = p.encodeResourceToString(myPatient);
// ourLog.info(messageString);
String[] strings = {"meta",
"String Extension",
"Organization/2.25.79433498044103547197447759549862032393",
"furry-grey",
"furry-white",
"FamilyName"};
assertThat(messageString, stringContainsInOrder(
Arrays.asList(strings)
));
String[] strings1 = {"extension",
"meta"};
assertThat(messageString, not(stringContainsInOrder(
Arrays.asList(strings1)
)));
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult result = val.validateWithResult(messageString);
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
ourLog.info(encoded);
assertTrue(result.isSuccessful());
assertThat(messageString, containsString("valueReference"));
assertThat(messageString, not(containsString("valueResource")));
}
/**
* See https://groups.google.com/d/msgid/hapi-fhir/a266083f-6454-4cf0-a431-c6500f052bea%40googlegroups.com?utm_medium= email&utm_source=footer
*/
@Test
public void testValidateWithExtensionsXml() {
PatientProfileDstu3 myPatient = new PatientProfileDstu3();
myPatient.setId("1");
myPatient.setColorPrimary(new CodeableConcept().addCoding(new Coding().setSystem("http://example.com#animalColor").setCode("furry-grey")));
myPatient.setColorSecondary(new CodeableConcept().addCoding(new Coding().setSystem("http://example.com#animalColor").setCode("furry-white")));
myPatient.setOwningOrganization(new Reference("Organization/2.25.79433498044103547197447759549862032393"));
myPatient.addName().setFamily("FamilyName");
myPatient.addExtension().setUrl("http://foo.com/example").setValue(new StringType("String Extension"));
IParser p = ourCtx.newXmlParser().setPrettyPrint(true);
String messageString = p.encodeResourceToString(myPatient);
ourLog.info(messageString);
//@formatter:off
String[] strings = {"meta",
"Organization/2.25.79433498044103547197447759549862032393",
"furry-grey",
"furry-white",
"String Extension",
"FamilyName"};
assertThat(messageString, stringContainsInOrder(
Arrays.asList(strings)
));
String[] strings1 = {"extension",
"meta"};
assertThat(messageString, not(stringContainsInOrder(
Arrays.asList(strings1)
)));
assertThat(messageString, containsString("url=\"http://ahr.copa.inso.tuwien.ac.at/StructureDefinition/Patient#animal-colorSecondary\""));
assertThat(messageString, containsString("url=\"http://foo.com/example\""));
//@formatter:on
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult result = val.validateWithResult(messageString);
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
ourLog.info(encoded);
assertTrue(result.isSuccessful());
assertThat(messageString, containsString("valueReference"));
assertThat(messageString, not(containsString("valueResource")));
}
@ResourceDef(name = "Patient")
public static class TestPatientFor327 extends Patient {
private static final long serialVersionUID = 1L;
@Child(name = "testCondition")
@ca.uhn.fhir.model.api.annotation.Extension(url = "testCondition", definedLocally = true, isModifier = false)
private List<Reference> testConditions = null;
public List<Reference> getConditions() {
return this.testConditions;
}
public void setCondition(List<Reference> ref) {
this.testConditions = ref;
}
}
}

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package ca.uhn.fhir.tests.integration.karaf.r4;
import java.io.IOException;
import java.util.List;
import ca.uhn.fhir.context.FhirContext;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r4.hapi.ctx.DefaultProfileValidationSupport;
import org.hl7.fhir.r4.hapi.ctx.HapiWorkerContext;
import org.hl7.fhir.r4.model.Base;
import org.hl7.fhir.r4.model.BooleanType;
import org.hl7.fhir.r4.model.Observation;
import org.hl7.fhir.r4.model.Patient;
import org.hl7.fhir.r4.model.StringType;
import org.hl7.fhir.r4.model.StructureDefinition;
import org.hl7.fhir.r4.utils.FHIRPathEngine;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.ops4j.pax.exam.Configuration;
import org.ops4j.pax.exam.Option;
import org.ops4j.pax.exam.junit.PaxExam;
import org.ops4j.pax.exam.spi.reactors.ExamReactorStrategy;
import org.ops4j.pax.exam.spi.reactors.PerClass;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.HAPI_FHIR_VALIDATION_R4;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.KARAF;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.WRAP;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
import static org.ops4j.pax.exam.CoreOptions.mavenBundle;
import static org.ops4j.pax.exam.CoreOptions.options;
import static org.ops4j.pax.exam.CoreOptions.when;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.debugConfiguration;
/**
* Useful docs about this test: https://ops4j1.jira.com/wiki/display/paxexam/FAQ
*/
@RunWith(PaxExam.class)
@ExamReactorStrategy(PerClass.class)
public class FhirInstanceValidatorR4Test {
private FhirContext ourCtx = FhirContext.forR4();
private FHIRPathEngine ourEngine = new FHIRPathEngine(new HapiWorkerContext(ourCtx, new DefaultProfileValidationSupport()));
private final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirInstanceValidatorR4Test.class);
@Configuration
public Option[] config() throws IOException {
return options(
KARAF.option(),
HAPI_FHIR_VALIDATION_R4.option(),
mavenBundle().groupId("org.apache.servicemix.bundles").artifactId("org.apache.servicemix.bundles.hamcrest").versionAsInProject(),
WRAP.option(),
when(false)
.useOptions(
debugConfiguration("5005", true))
);
}
@Test
public void testAs() throws Exception {
Observation obs = new Observation();
obs.setValue(new StringType("FOO"));
List<Base> value = ourEngine.evaluate(obs, "Observation.value.as(String)");
assertEquals(1, value.size());
assertEquals("FOO", ((StringType)value.get(0)).getValue());
}
@Test
public void testExistsWithNoValue() throws FHIRException {
Patient patient = new Patient();
patient.setDeceased(new BooleanType());
List<Base> eval = ourEngine.evaluate(patient, "Patient.deceased.exists()");
ourLog.info(eval.toString());
assertFalse(((BooleanType)eval.get(0)).getValue());
}
@Test
public void testExistsWithValue() throws FHIRException {
Patient patient = new Patient();
patient.setDeceased(new BooleanType(false));
List<Base> eval = ourEngine.evaluate(patient, "Patient.deceased.exists()");
ourLog.info(eval.toString());
assertTrue(((BooleanType)eval.get(0)).getValue());
}
@Test
public void testConcatenation() throws FHIRException {
String exp = "Patient.name.family & '.'";
Patient p = new Patient();
p.addName().setFamily("TEST");
String result = ourEngine.evaluateToString(p, exp);
assertEquals("TEST.", result);
}
@Test
public void testConcatenationFunction() throws FHIRException {
String exp = "element.first().path.startsWith(%resource.type) and element.tail().all(path.startsWith(%resource.type&'.'))";
StructureDefinition sd = new StructureDefinition();
StructureDefinition.StructureDefinitionDifferentialComponent diff = sd.getDifferential();
diff.addElement().setPath("Patient.name");
Patient p = new Patient();
p.addName().setFamily("TEST");
List<Base> result = ourEngine.evaluate(null, p, diff, exp);
ourLog.info(result.toString());
// assertEquals("TEST.", result);
}
}

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package ca.uhn.fhir.tests.integration.karaf.r4;
import java.io.IOException;
import java.util.HashSet;
import java.util.Set;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.parser.IParser;
import com.google.common.collect.Sets;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.hl7.fhir.r4.model.Bundle;
import org.hl7.fhir.r4.model.Extension;
import org.hl7.fhir.r4.model.Medication;
import org.hl7.fhir.r4.model.MedicationDispense;
import org.hl7.fhir.r4.model.MedicationRequest;
import org.hl7.fhir.r4.model.Patient;
import org.hl7.fhir.r4.model.Reference;
import org.hl7.fhir.r4.model.StringType;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.ops4j.pax.exam.Configuration;
import org.ops4j.pax.exam.Option;
import org.ops4j.pax.exam.junit.PaxExam;
import org.ops4j.pax.exam.spi.reactors.ExamReactorStrategy;
import org.ops4j.pax.exam.spi.reactors.PerClass;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.HAPI_FHIR_R4;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.KARAF;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.WRAP;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.core.IsNot.not;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertNotEquals;
import static org.junit.Assert.assertThat;
import static org.ops4j.pax.exam.CoreOptions.mavenBundle;
import static org.ops4j.pax.exam.CoreOptions.options;
import static org.ops4j.pax.exam.CoreOptions.when;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.debugConfiguration;
/**
* Useful docs about this test: https://ops4j1.jira.com/wiki/display/paxexam/FAQ
*/
@RunWith(PaxExam.class)
@ExamReactorStrategy(PerClass.class)
public class R4JsonParserTest {
private final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(R4JsonParserTest.class);
private FhirContext ourCtx = FhirContext.forR4();
@Configuration
public Option[] config() throws IOException {
return options(
KARAF.option(),
WRAP.option(),
HAPI_FHIR_R4.option(),
mavenBundle().groupId("org.apache.servicemix.bundles").artifactId("org.apache.servicemix.bundles.hamcrest").versionAsInProject(),
when(false)
.useOptions(
debugConfiguration("5005", true))
);
}
private Bundle createBundleWithPatient() {
Bundle b = new Bundle();
b.setId("BUNDLEID");
b.getMeta().addProfile("http://FOO");
Patient p = new Patient();
p.setId("PATIENTID");
p.getMeta().addProfile("http://BAR");
p.addName().addGiven("GIVEN");
b.addEntry().setResource(p);
return b;
}
/**
* See #814
*/
@Test
public void testDuplicateContainedResourcesNotOutputtedTwice() {
MedicationDispense md = new MedicationDispense();
MedicationRequest mr = new MedicationRequest();
md.addAuthorizingPrescription().setResource(mr);
Medication med = new Medication();
md.setMedication(new Reference(med));
mr.setMedication(new Reference(med));
String encoded = ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(md);
ourLog.info(encoded);
int idx = encoded.indexOf("\"Medication\"");
assertNotEquals(-1, idx);
idx = encoded.indexOf("\"Medication\"", idx + 1);
assertEquals(-1, idx);
}
/**
* See #814
*/
@Test
public void testDuplicateContainedResourcesNotOutputtedTwiceWithManualIds() {
MedicationDispense md = new MedicationDispense();
MedicationRequest mr = new MedicationRequest();
mr.setId("#MR");
md.addAuthorizingPrescription().setResource(mr);
Medication med = new Medication();
med.setId("#MED");
md.setMedication(new Reference(med));
mr.setMedication(new Reference(med));
String encoded = ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(md);
ourLog.info(encoded);
int idx = encoded.indexOf("\"Medication\"");
assertNotEquals(-1, idx);
idx = encoded.indexOf("\"Medication\"", idx + 1);
assertEquals(-1, idx);
}
@Test
public void testExcludeNothing() {
IParser parser = ourCtx.newJsonParser().setPrettyPrint(true);
Set<String> excludes = new HashSet<>();
// excludes.add("*.id");
parser.setDontEncodeElements(excludes);
Bundle b = createBundleWithPatient();
String encoded = parser.encodeResourceToString(b);
ourLog.info(encoded);
assertThat(encoded, containsString("BUNDLEID"));
assertThat(encoded, containsString("http://FOO"));
assertThat(encoded, containsString("PATIENTID"));
assertThat(encoded, containsString("http://BAR"));
assertThat(encoded, containsString("GIVEN"));
b = parser.parseResource(Bundle.class, encoded);
assertEquals("BUNDLEID", b.getIdElement().getIdPart());
assertEquals("Patient/PATIENTID", ((Patient) b.getEntry().get(0).getResource()).getId());
assertEquals("GIVEN", ((Patient) b.getEntry().get(0).getResource()).getNameFirstRep().getGivenAsSingleString());
}
@Test
public void testExcludeRootStuff() {
IParser parser = ourCtx.newJsonParser().setPrettyPrint(true);
Set<String> excludes = new HashSet<>();
excludes.add("id");
excludes.add("meta");
parser.setDontEncodeElements(excludes);
Bundle b = createBundleWithPatient();
String encoded = parser.encodeResourceToString(b);
ourLog.info(encoded);
assertThat(encoded, not(containsString("BUNDLEID")));
assertThat(encoded, not(containsString("http://FOO")));
assertThat(encoded, (containsString("PATIENTID")));
assertThat(encoded, (containsString("http://BAR")));
assertThat(encoded, containsString("GIVEN"));
b = parser.parseResource(Bundle.class, encoded);
assertNotEquals("BUNDLEID", b.getIdElement().getIdPart());
assertEquals("Patient/PATIENTID", ((Patient) b.getEntry().get(0).getResource()).getId());
assertEquals("GIVEN", ((Patient) b.getEntry().get(0).getResource()).getNameFirstRep().getGivenAsSingleString());
}
@Test
public void testExcludeStarDotStuff() {
IParser parser = ourCtx.newJsonParser().setPrettyPrint(true);
Set<String> excludes = new HashSet<>();
excludes.add("*.id");
excludes.add("*.meta");
parser.setDontEncodeElements(excludes);
Bundle b = createBundleWithPatient();
String encoded = parser.encodeResourceToString(b);
ourLog.info(encoded);
assertThat(encoded, not(containsString("BUNDLEID")));
assertThat(encoded, not(containsString("http://FOO")));
assertThat(encoded, not(containsString("PATIENTID")));
assertThat(encoded, not(containsString("http://BAR")));
assertThat(encoded, containsString("GIVEN"));
b = parser.parseResource(Bundle.class, encoded);
assertNotEquals("BUNDLEID", b.getIdElement().getIdPart());
assertNotEquals("Patient/PATIENTID", ((Patient) b.getEntry().get(0).getResource()).getId());
assertEquals("GIVEN", ((Patient) b.getEntry().get(0).getResource()).getNameFirstRep().getGivenAsSingleString());
}
/**
* Test that long JSON strings don't get broken up
*/
@Test
public void testNoBreakInLongString() {
String longString = StringUtils.leftPad("", 100000, 'A');
Patient p = new Patient();
p.addName().setFamily(longString);
String encoded = ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p);
assertThat(encoded, containsString(longString));
}
@Test
public void testParseAndEncodeExtensionWithValueWithExtension() {
String input = "{\n" +
" \"resourceType\": \"Patient\",\n" +
" \"extension\": [\n" +
" {\n" +
" \"url\": \"https://purl.org/elab/fhir/network/StructureDefinition/1/BirthWeight\",\n" +
" \"_valueDecimal\": {\n" +
" \"extension\": [\n" +
" {\n" +
" \"url\": \"http://www.hl7.org/fhir/extension-data-absent-reason.html\",\n" +
" \"valueCoding\": {\n" +
" \"system\": \"http://hl7.org/fhir/ValueSet/birthweight\",\n" +
" \"code\": \"Underweight\",\n" +
" \"userSelected\": false\n" +
" }\n" +
" }\n" +
" ]\n" +
" }\n" +
" }\n" +
" ],\n" +
" \"identifier\": [\n" +
" {\n" +
" \"system\": \"https://purl.org/elab/fhir/network/StructureDefinition/1/EuroPrevallStudySubjects\",\n" +
" \"value\": \"1\"\n" +
" }\n" +
" ],\n" +
" \"gender\": \"female\"\n" +
"}";
IParser jsonParser = ourCtx.newJsonParser();
IParser xmlParser = ourCtx.newXmlParser();
jsonParser.setDontEncodeElements(Sets.newHashSet("id", "meta"));
xmlParser.setDontEncodeElements(Sets.newHashSet("id", "meta"));
Patient parsed = jsonParser.parseResource(Patient.class, input);
ourLog.info(jsonParser.setPrettyPrint(true).encodeResourceToString(parsed));
assertThat(xmlParser.encodeResourceToString(parsed), containsString("Underweight"));
assertThat(jsonParser.encodeResourceToString(parsed), containsString("Underweight"));
}
@Test
public void testParseExtensionOnPrimitive() throws IOException {
String input = IOUtils.toString(R4JsonParserTest.class.getResourceAsStream("/extension-on-line.txt"));
IParser parser = ourCtx.newJsonParser().setPrettyPrint(true);
Patient pt = parser.parseResource(Patient.class, input);
StringType line0 = pt.getAddressFirstRep().getLine().get(0);
assertEquals("535 Sheppard Avenue West, Unit 1907", line0.getValue());
Extension houseNumberExt = line0.getExtensionByUrl("http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-houseNumber");
assertEquals("535", ((StringType) houseNumberExt.getValue()).getValue());
}
}

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package ca.uhn.fhir.tests.integration.karaf.r4;
import java.io.IOException;
import java.util.HashSet;
import java.util.Set;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.parser.IParser;
import com.google.common.collect.Sets;
import org.hamcrest.core.IsNot;
import org.hl7.fhir.r4.model.Bundle;
import org.hl7.fhir.r4.model.Patient;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.ops4j.pax.exam.Configuration;
import org.ops4j.pax.exam.Option;
import org.ops4j.pax.exam.junit.PaxExam;
import org.ops4j.pax.exam.spi.reactors.ExamReactorStrategy;
import org.ops4j.pax.exam.spi.reactors.PerClass;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.HAPI_FHIR_R4;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.KARAF;
import static ca.uhn.fhir.tests.integration.karaf.PaxExamOptions.WRAP;
import static org.hamcrest.Matchers.containsString;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertNotEquals;
import static org.junit.Assert.assertThat;
import static org.ops4j.pax.exam.CoreOptions.mavenBundle;
import static org.ops4j.pax.exam.CoreOptions.options;
import static org.ops4j.pax.exam.CoreOptions.when;
import static org.ops4j.pax.exam.karaf.options.KarafDistributionOption.debugConfiguration;
/**
* Useful docs about this test: https://ops4j1.jira.com/wiki/display/paxexam/FAQ
*/
@RunWith(PaxExam.class)
@ExamReactorStrategy(PerClass.class)
public class R4XmlParserTest {
private final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(R4XmlParserTest.class);
private FhirContext ourCtx = FhirContext.forR4();
@Configuration
public Option[] config() throws IOException {
return options(
KARAF.option(),
WRAP.option(),
HAPI_FHIR_R4.option(),
mavenBundle().groupId("org.apache.servicemix.bundles").artifactId("org.apache.servicemix.bundles.hamcrest").versionAsInProject(),
when(false)
.useOptions(
debugConfiguration("5005", true))
);
}
private Bundle createBundleWithPatient() {
Bundle b = new Bundle();
b.setId("BUNDLEID");
b.getMeta().addProfile("http://FOO");
Patient p = new Patient();
p.setId("PATIENTID");
p.getMeta().addProfile("http://BAR");
p.addName().addGiven("GIVEN");
b.addEntry().setResource(p);
return b;
}
@Test
public void testParseAndEncodeXmlNumericEntity() {
String input = "<Patient xmlns=\"http://hl7.org/fhir\">\n" +
" <name>\n" +
" <family value=\"A &#xA; B\"/>\n" +
" </name>\n" +
"</Patient>";
Patient p = ourCtx.newXmlParser().parseResource(Patient.class, input);
assertEquals("A \n B", p.getNameFirstRep().getFamily());
String output = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(p);
ourLog.info(output);
}
@Test
public void testExcludeNothing() {
IParser parser = ourCtx.newXmlParser().setPrettyPrint(true);
Set<String> excludes = new HashSet<>();
// excludes.add("*.id");
parser.setDontEncodeElements(excludes);
Bundle b = createBundleWithPatient();
String encoded = parser.encodeResourceToString(b);
ourLog.info(encoded);
assertThat(encoded, containsString("BUNDLEID"));
assertThat(encoded, containsString("http://FOO"));
assertThat(encoded, containsString("PATIENTID"));
assertThat(encoded, containsString("http://BAR"));
assertThat(encoded, containsString("GIVEN"));
b = parser.parseResource(Bundle.class, encoded);
assertEquals("BUNDLEID", b.getIdElement().getIdPart());
assertEquals("Patient/PATIENTID", ((Patient) b.getEntry().get(0).getResource()).getId());
assertEquals("GIVEN", ((Patient) b.getEntry().get(0).getResource()).getNameFirstRep().getGivenAsSingleString());
}
@Test
public void testExcludeRootStuff() {
IParser parser = ourCtx.newXmlParser().setPrettyPrint(true);
Set<String> excludes = new HashSet<>();
excludes.add("id");
excludes.add("meta");
parser.setDontEncodeElements(excludes);
Bundle b = createBundleWithPatient();
String encoded = parser.encodeResourceToString(b);
ourLog.info(encoded);
assertThat(encoded, IsNot.not(containsString("BUNDLEID")));
assertThat(encoded, IsNot.not(containsString("http://FOO")));
assertThat(encoded, (containsString("PATIENTID")));
assertThat(encoded, (containsString("http://BAR")));
assertThat(encoded, containsString("GIVEN"));
b = parser.parseResource(Bundle.class, encoded);
assertNotEquals("BUNDLEID", b.getIdElement().getIdPart());
assertEquals("Patient/PATIENTID", ((Patient) b.getEntry().get(0).getResource()).getId());
assertEquals("GIVEN", ((Patient) b.getEntry().get(0).getResource()).getNameFirstRep().getGivenAsSingleString());
}
@Test
public void testExcludeStarDotStuff() {
IParser parser = ourCtx.newXmlParser().setPrettyPrint(true);
Set<String> excludes = new HashSet<>();
excludes.add("*.id");
excludes.add("*.meta");
parser.setDontEncodeElements(excludes);
Bundle b = createBundleWithPatient();
String encoded = parser.encodeResourceToString(b);
ourLog.info(encoded);
assertThat(encoded, IsNot.not(containsString("BUNDLEID")));
assertThat(encoded, IsNot.not(containsString("http://FOO")));
assertThat(encoded, IsNot.not(containsString("PATIENTID")));
assertThat(encoded, IsNot.not(containsString("http://BAR")));
assertThat(encoded, containsString("GIVEN"));
b = parser.parseResource(Bundle.class, encoded);
assertNotEquals("BUNDLEID", b.getIdElement().getIdPart());
assertNotEquals("Patient/PATIENTID", ((Patient) b.getEntry().get(0).getResource()).getId());
assertEquals("GIVEN", ((Patient) b.getEntry().get(0).getResource()).getNameFirstRep().getGivenAsSingleString());
}
@Test
public void testParseAndEncodeExtensionWithValueWithExtension() {
String input = "<Patient xmlns=\"http://hl7.org/fhir\">\n" +
" <extension url=\"https://purl.org/elab/fhir/network/StructureDefinition/1/BirthWeight\">\n" +
" <valueDecimal>\n" +
" <extension url=\"http://www.hl7.org/fhir/extension-data-absent-reason.html\">\n" +
" <valueCoding>\n" +
" <system value=\"http://hl7.org/fhir/ValueSet/birthweight\"/>\n" +
" <code value=\"Underweight\"/>\n" +
" <userSelected value=\"false\"/>\n" +
" </valueCoding>\n" +
" </extension>\n" +
" </valueDecimal>\n" +
" </extension>\n" +
" <identifier>\n" +
" <system value=\"https://purl.org/elab/fhir/network/StructureDefinition/1/EuroPrevallStudySubjects\"/>\n" +
" <value value=\"1\"/>\n" +
" </identifier>\n" +
" <gender value=\"female\"/>\n" +
"</Patient>";
IParser xmlParser = ourCtx.newXmlParser();
IParser jsonParser = ourCtx.newJsonParser();
jsonParser.setDontEncodeElements(Sets.newHashSet("id", "meta"));
xmlParser.setDontEncodeElements(Sets.newHashSet("id", "meta"));
Patient parsed = xmlParser.parseResource(Patient.class, input);
ourLog.info(jsonParser.setPrettyPrint(true).encodeResourceToString(parsed));
assertThat(xmlParser.encodeResourceToString(parsed), containsString("Underweight"));
assertThat(jsonParser.encodeResourceToString(parsed), containsString("Underweight"));
}
}

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{
"resourceType": "Bundle",
"id": "example",
"meta": {
"versionId": "1",
"lastUpdated": "2014-08-18T01:43:30Z"
},
"type": "searchset",
"total": 3,
"link": [
{
"relation": "next",
"url": "https://example.com/base/MedicationOrder?patient=347&searchId=ff15fd40-ff71-4b48-b366-09c706bed9d0&page=2"
},
{
"relation": "self",
"url": "https://example.com/base/MedicationOrder?patient=347&_include=MedicationOrder.medication"
}
],
"entry": [
{
"fullUrl": "http://example.com/base/MedicationOrder/3123/_history/1",
"resource": {
"resourceType": "MedicationOrder",
"id": "3123",
"meta" : {
"versionId" : "1",
"lastUpdated" : "2014-08-16T05:31:17Z"
},
"patient": {
"reference": "Patient/347"
},
"medicationReference": {
"reference": "Medication/example"
}
},
"search": {
"mode": "match",
"score": 1
}
},
{
"fullUrl": "http://example.com/base/Medication/example",
"resource": {
"resourceType": "Medication",
"id": "example"
},
"search": {
"mode": "include"
}
}
]
}

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<Bundle
xmlns="http://hl7.org/fhir">
<id value="487d3669-0e1c-4867-b124-400d1849548d"></id>
<type value="searchset"></type>
<base value="http://localhost:19080/fhir/dstu1"></base>
<link>
<relation value="just trying add link"></relation>
<url value="blarion"></url>
</link>
<link>
<relation value="self"></relation>
<url value="http://localhost:19080/fhir/dstu1/Observation?subject.identifier=puppet|CLONE-AA102"></url>
</link>
<entry>
<link>
<relation value="orionhealth.edit"></relation>
<url value="Observation"></url>
</link>
<resource>
<Observation
xmlns="http://hl7.org/fhir">
<id value="0d87f02c-da2c-4551-9ead-2956f0165a4f"></id>
<extension url="http://orionhealth.com/fhir/extensions#created-by"></extension>
<extension url="http://orionhealth.com/fhir/extensions#last-modified-by"></extension>
<extension url="http://orionhealth.com/fhir/extensions#received-instant">
<valueInstant value="2015-06-25T17:08:47.190+12:00"></valueInstant>
</extension>
<code>
<coding>
<system value="http://loinc.org"></system>
<code value="8867-4"></code>
</coding>
</code>
<valueString value="observationValue"></valueString>
<status value="final"></status>
<reliability value="ok"></reliability>
<subject>
<reference value="Patient/INGE6TSFFVAUCMJQGJAHA5LQOBSXI"></reference>
</subject>
</Observation>
</resource>
</entry>
<entry>
<link>
<relation value="orionhealth.edit"></relation>
<url value="Observation"></url>
</link>
<resource>
<Observation
xmlns="http://hl7.org/fhir">
<id value="c54ac0cc-a99f-40aa-9541-c5aa853a2e88"></id>
<extension url="http://orionhealth.com/fhir/extensions#created-by"></extension>
<extension url="http://orionhealth.com/fhir/extensions#last-modified-by"></extension>
<extension url="http://orionhealth.com/fhir/extensions#received-instant">
<valueInstant value="2015-06-25T17:08:47.190+12:00"></valueInstant>
</extension>
<code>
<coding>
<system value="http://loinc.org"></system>
<code value="3141-9"></code>
</coding>
</code>
<valueString value="observationValue"></valueString>
<status value="final"></status>
<reliability value="ok"></reliability>
<subject>
<reference value="Patient/INGE6TSFFVAUCMJQGJAHA5LQOBSXI"></reference>
</subject>
</Observation>
</resource>
</entry>
</Bundle>

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<Bundle xmlns="http://hl7.org/fhir">
<id value="fe7ff16d-8bdf-47a5-9de3-20165c6fe440" />
<meta>
<lastUpdated value="2016-08-25T12:17:12.159-04:00" />
</meta>
<type value="searchset" />
<total value="208" />
<link>
<relation value="self" />
<url value="http://foo.uhn.on.ca:25180/uhn-fhir-service-2.1/DiagnosticReport?_format=xml&amp;_include=DiagnosticReport%3Aencounter&amp;_include=Encounter%3AfacilityLocation&amp;_include=Observation%3Aperformer&amp;_include=DiagnosticReport%3Aresult&amp;_include=Encounter%3Alocation&amp;_include=Location.partOf&amp;_include=Encounter%3Aparticipant&amp;_include=DiagnosticReport%3Apatient&amp;subject%3Aidentifier=urn%3Aoid%3A2.16.840.1.113883.3.239.18.148%7C7000135" />
</link>
<entry>
<fullUrl value="http://uhnvesb01d.uhn.on.ca:25180/uhn-fhir-service-2.1/DiagnosticReport/7162221" />
<resource>
<DiagnosticReport xmlns="http://hl7.org/fhir">
<id value="7162221" />
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/diagnosticreport" />
</meta>
<contained>
<Observation xmlns="http://hl7.org/fhir">
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/observation" />
</meta>
<extension url="http://fhir.uhn.ca/Profile/observation#source_system_status">
<valueString value="F" />
</extension>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.6" />
<code value="10017.1" />
</coding>
<text value="Date Dictated" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<issued value="2014-09-26T11:55:33.000-04:00" />
<valueString value="Fri, 26 Sep 2014" />
<interpretation>
<coding>
<system value="urn:uhn:qcpr:interpretation_codes" />
<code value="N" />
</coding>
</interpretation>
</Observation>
</contained>
<extension url="http://fhir.uhn.ca/Profile/diagnosticreport#source_system_status">
<valueString value="F" />
</extension>
<identifier>
<system value="urn:uhn:qcpr:order_ids" />
<value value="GI93#discharge_5677961273802d07ad7d079141525bba" />
</identifier>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.5" />
<code value="5053" />
</coding>
<text value="Unscheduled Discharge Summary" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<encounter>
<reference value="Encounter/5885735" />
</encounter>
<effectiveDateTime value="2014-09-26T11:55:00-04:00" />
<issued value="2014-09-26T11:55:33.000-04:00" />
</DiagnosticReport>
</resource>
</entry>
</Bundle>

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<Bundle xmlns="http://hl7.org/fhir">
<id value="fe7ff16d-8bdf-47a5-9de3-20165c6fe440" />
<meta>
<lastUpdated value="2016-08-25T12:17:12.159-04:00" />
</meta>
<type value="searchset" />
<total value="208" />
<link>
<relation value="self" />
<url value="http://foo.uhn.on.ca:25180/uhn-fhir-service-2.1/DiagnosticReport?_format=xml&amp;_include=DiagnosticReport%3Aencounter&amp;_include=Encounter%3AfacilityLocation&amp;_include=Observation%3Aperformer&amp;_include=DiagnosticReport%3Aresult&amp;_include=Encounter%3Alocation&amp;_include=Location.partOf&amp;_include=Encounter%3Aparticipant&amp;_include=DiagnosticReport%3Apatient&amp;subject%3Aidentifier=urn%3Aoid%3A2.16.840.1.113883.3.239.18.148%7C7000135" />
</link>
<entry>
<fullUrl value="http://uhnvesb01d.uhn.on.ca:25180/uhn-fhir-service-2.1/DiagnosticReport/7162221" />
<resource>
<DiagnosticReport xmlns="http://hl7.org/fhir">
<id value="7162221" />
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/diagnosticreport" />
</meta>
<extension url="http://fhir.uhn.ca/Profile/diagnosticreport#source_system_status">
<valueString value="F" />
</extension>
<identifier>
<system value="urn:uhn:qcpr:order_ids" />
<value value="GI93#discharge_5677961273802d07ad7d079141525bba" />
</identifier>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.5" />
<code value="5053" />
</coding>
<text value="Unscheduled Discharge Summary" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<encounter>
<reference value="Encounter/5885735" />
</encounter>
<effectiveDateTime value="2014-09-26T11:55:00-04:00" />
<issued value="2014-09-26T11:55:33.000-04:00" />
<result>
<reference value="#1" />
</result>
</DiagnosticReport>
</resource>
</entry>
</Bundle>

317
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<Bundle xmlns="http://hl7.org/fhir">
<id value="fe7ff16d-8bdf-47a5-9de3-20165c6fe440" />
<meta>
<lastUpdated value="2016-08-25T12:17:12.159-04:00" />
</meta>
<type value="searchset" />
<total value="208" />
<link>
<relation value="self" />
<url value="http://foo.uhn.on.ca:25180/uhn-fhir-service-2.1/DiagnosticReport?_format=xml&amp;_include=DiagnosticReport%3Aencounter&amp;_include=Encounter%3AfacilityLocation&amp;_include=Observation%3Aperformer&amp;_include=DiagnosticReport%3Aresult&amp;_include=Encounter%3Alocation&amp;_include=Location.partOf&amp;_include=Encounter%3Aparticipant&amp;_include=DiagnosticReport%3Apatient&amp;subject%3Aidentifier=urn%3Aoid%3A2.16.840.1.113883.3.239.18.148%7C7000135" />
</link>
<entry>
<fullUrl value="http://uhnvesb01d.uhn.on.ca:25180/uhn-fhir-service-2.1/DiagnosticReport/7162221" />
<resource>
<DiagnosticReport xmlns="http://hl7.org/fhir">
<id value="7162221" />
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/diagnosticreport" />
</meta>
<contained>
<Observation xmlns="http://hl7.org/fhir">
<id value="1" />
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/observation" />
</meta>
<extension url="http://fhir.uhn.ca/Profile/observation#source_system_status">
<valueString value="F" />
</extension>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.6" />
<code value="10017.1" />
</coding>
<text value="Date Dictated" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<issued value="2014-09-26T11:55:33.000-04:00" />
<valueString value="Fri, 26 Sep 2014" />
<interpretation>
<coding>
<system value="urn:uhn:qcpr:interpretation_codes" />
<code value="N" />
</coding>
</interpretation>
</Observation>
</contained>
<contained>
<Observation xmlns="http://hl7.org/fhir">
<id value="2" />
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/observation" />
</meta>
<extension url="http://fhir.uhn.ca/Profile/observation#source_system_status">
<valueString value="F" />
</extension>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.6" />
<code value="1126527.2" />
</coding>
<text value="Dictated by" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<issued value="2014-09-26T11:55:33.000-04:00" />
<performer>
<reference value="#3" />
</performer>
<valueString value="Gered Trystan King" />
<interpretation>
<coding>
<system value="urn:uhn:qcpr:interpretation_codes" />
<code value="normal" />
</coding>
</interpretation>
</Observation>
</contained>
<contained>
<Practitioner xmlns="http://hl7.org/fhir">
<id value="3" />
<identifier>
<system value="urn:uhn:qcpr:user_ids" />
<value value="160920" />
</identifier>
<name>
<family value="Gered Trystan King" />
</name>
</Practitioner>
</contained>
<contained>
<Observation xmlns="http://hl7.org/fhir">
<id value="4" />
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/observation" />
</meta>
<extension url="http://fhir.uhn.ca/Profile/observation#source_system_status">
<valueString value="F" />
</extension>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.6" />
<code value="14002.3" />
</coding>
<text value="Attending/Staff" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<issued value="2014-09-26T11:55:33.000-04:00" />
<performer>
<reference value="#5" />
</performer>
<valueString value="Gered Trystan King" />
<interpretation>
<coding>
<system value="urn:uhn:qcpr:interpretation_codes" />
<code value="normal" />
</coding>
</interpretation>
</Observation>
</contained>
<contained>
<Practitioner xmlns="http://hl7.org/fhir">
<id value="5" />
<identifier>
<system value="urn:uhn:qcpr:user_ids" />
<value value="160920" />
</identifier>
<name>
<family value="Gered Trystan King" />
</name>
</Practitioner>
</contained>
<contained>
<Observation xmlns="http://hl7.org/fhir">
<id value="6" />
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/observation" />
</meta>
<extension url="http://fhir.uhn.ca/Profile/observation#source_system_status">
<valueString value="F" />
</extension>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.6" />
<code value="10063.4" />
</coding>
<text value="Distribute Y/N?" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<issued value="2014-09-26T11:55:33.000-04:00" />
<valueString value="yes" />
<interpretation>
<coding>
<system value="urn:uhn:qcpr:interpretation_codes" />
<code value="N" />
</coding>
</interpretation>
</Observation>
</contained>
<contained>
<Observation xmlns="http://hl7.org/fhir">
<id value="7" />
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/observation" />
</meta>
<extension url="http://fhir.uhn.ca/Profile/observation#source_system_status">
<valueString value="F" />
</extension>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.6" />
<code value="14001.5" />
</coding>
<text value="Medical Records Report" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<issued value="2014-09-26T11:55:33.000-04:00" />
<valueString value="Medical Records Report" />
</Observation>
</contained>
<contained>
<Observation xmlns="http://hl7.org/fhir">
<id value="8" />
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/observation" />
</meta>
<extension url="http://fhir.uhn.ca/Profile/observation#source_system_status">
<valueString value="F" />
</extension>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.6" />
<code value="10060.6" />
</coding>
<text value="Report Type" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<issued value="2014-09-26T11:55:33.000-04:00" />
<valueString value="Unscheduled Discharge Summary" />
<interpretation>
<coding>
<system value="urn:uhn:qcpr:interpretation_codes" />
<code value="N" />
</coding>
</interpretation>
</Observation>
</contained>
<contained>
<Observation xmlns="http://hl7.org/fhir">
<id value="9" />
<meta>
<lastUpdated value="2014-09-26T11:55:33.000-04:00" />
<profile value="http://fhir.uhn.ca/Profile/observation" />
</meta>
<extension url="http://fhir.uhn.ca/Profile/observation#source_system_status">
<valueString value="F" />
</extension>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.6" />
<code value="10064.7" />
</coding>
<text value="Review/Query?" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<issued value="2014-09-26T11:55:33.000-04:00" />
<valueString value="no" />
<interpretation>
<coding>
<system value="urn:uhn:qcpr:interpretation_codes" />
<code value="N" />
</coding>
</interpretation>
</Observation>
</contained>
<extension url="http://fhir.uhn.ca/Profile/diagnosticreport#source_system_status">
<valueString value="F" />
</extension>
<identifier>
<system value="urn:uhn:qcpr:order_ids" />
<value value="GI93#discharge_5677961273802d07ad7d079141525bba" />
</identifier>
<status value="final" />
<code>
<coding>
<system value="urn:oid:1.3.6.1.4.1.12201.102.5" />
<code value="5053" />
</coding>
<text value="Unscheduled Discharge Summary" />
</code>
<subject>
<reference value="Patient/5556918" />
</subject>
<context>
<reference value="Encounter/5885735" />
</context>
<effectiveDateTime value="2014-09-26T11:55:00-04:00" />
<issued value="2014-09-26T11:55:33.000-04:00" />
<result>
<reference value="#1" />
</result>
<result>
<reference value="#2" />
</result>
<result>
<reference value="#4" />
</result>
<result>
<reference value="#6" />
</result>
<result>
<reference value="#7" />
</result>
<result>
<reference value="#8" />
</result>
<result>
<reference value="#9" />
</result>
</DiagnosticReport>
</resource>
</entry>
</Bundle>

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hapi-fhir-karaf-integration-tests/src/test/resources/dstu3/myconsent-resource.json Normal file
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{
"resourceType": "Consent",
"id": "consent-example-basic",
"text": {
"status": "generated",
"div": "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n <p>\n\tAuthorize Normal access for Treatment\n\t</p><p>\n Patient &quot;P. van de Heuvel&quot; wishes to have all of the PHI collected at the Good Health Psychiatric Hospital \n available for normal treatment use.\n </p>\n </div>"
},
"status": "active",
"patient": {
"reference": "Patient/f001",
"display": "P. van de Heuvel"
},
"period": {
"start": "1964-01-01",
"end": "2016-01-01"
},
"dateTime": "2016-05-11",
"organization": [
{
"reference": "Organization/Infoway",
"display": "Canada Infoway"
}
],
"sourceAttachment": {
"title": "The terms of the consent in lawyer speak."
},
"identifier": [
{
"use": "usual",
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/v2/0203",
"code": "MR"
}
]
},
"system": "urn:oid:1.2.36.146.595.217.0.1",
"value": "12345",
"period": {
"start": "2001-05-06"
},
"assigner": {
"display": "Acme Healthcare"
}
}
],
"extension":[
{
"url" : "http://hl7.org/fhir/StructureDefinition/PruebaExtension",
"valueString" : "123456789"
}
],
"policyRule": "http://goodhealth.org/consent/policy/opt-in"
}

140
hapi-fhir-karaf-integration-tests/src/test/resources/example-patient-general-hl7orgdstu2.json Normal file
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{
"resourceType":"Patient",
"text":{
"status":"generated",
"div":"<div>\n <table>\n <tbody>\n <tr>\n <td>Name</td>\n <td>Peter James <b>Chalmers</b> (\"Jim\")</td>\n </tr>\n <tr>\n <td>Address</td>\n <td>534 Erewhon, Pleasantville, Vic, 3999</td>\n </tr>\n <tr>\n <td>Contacts</td>\n <td>Home: unknown. Work: (03) 5555 6473</td>\n </tr>\n <tr>\n <td>Id</td>\n <td>MRN: 12345 (Acme Healthcare)</td>\n </tr>\n </tbody>\n </table>\n </div>"
},
"extension":[
{
"url":"urn:patientext:att",
"valueAttachment":{
"contentType":"aaaa",
"data":"AAAA"
}
},
{
"url":"urn:patientext:moreext",
"extension":[
{
"url":"urn:patientext:moreext:1",
"valueString":"str1"
},
{
"url":"urn:patientext:moreext:2",
"valueString":"str2"
}
]
}
],
"modifierExtension":[
{
"url":"urn:modext",
"valueDate":"2011-01-02"
}
],
"identifier":[
{
"use":"usual",
"system":"urn:oid:1.2.36.146.595.217.0.1",
"value":"12345",
"period":{
"start":"2001-05-06"
},
"assigner":{
"display":"Acme Healthcare"
}
}
],
"active":true,
"name":[
{
"use":"official",
"family":[
"Chalmers"
],
"given":[
"Peter",
"James"
]
},
{
"use":"usual",
"given":[
"Jim"
]
}
],
"telecom":[
{
"use":"home"
},
{
"system":"phone",
"value":"(03) 5555 6473",
"use":"work"
}
],
"gender":"male",
"birthDate":"1974-12-25",
"deceasedBoolean":false,
"address":[
{
"use":"home",
"line":[
"534 Erewhon St"
],
"city":"PleasantVille",
"state":"Vic",
"postalCode":"3999"
},
{
"use":"old",
"line":[
"SecondAddress"
]
}
],
"contact":[
{
"relationship":[
{
"coding":[
{
"system":"http://hl7.org/fhir/patient-contact-relationship",
"code":"partner"
}
]
}
],
"name":{
"family":[
"du",
"Marché"
],
"_family":[
{
"extension":[
{
"url":"http://hl7.org/fhir/Profile/iso-21090#qualifier",
"valueCode":"VV"
}
]
},
null
],
"given":[
"Bénédicte"
]
},
"telecom":[
{
"system":"phone",
"value":"+33 (237) 998327"
}
]
}
],
"managingOrganization":{
"reference":"Organization/1"
}
}

128
hapi-fhir-karaf-integration-tests/src/test/resources/example-patient-general-hl7orgdstu2.xml Normal file
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<Patient xmlns="http://hl7.org/fhir">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<table>
<tbody>
<tr>
<td>Name</td>
<td>Peter James <b>Chalmers</b> (&quot;Jim&quot;)</td>
</tr>
<tr>
<td>Address</td>
<td>534 Erewhon, Pleasantville, Vic, 3999</td>
</tr>
<tr>
<td>Contacts</td>
<td>Home: unknown. Work: (03) 5555 6473</td>
</tr>
<tr>
<td>Id</td>
<td>MRN: 12345 (Acme Healthcare)</td>
</tr>
</tbody>
</table>
</div>
</text>
<extension url="urn:patientext:att">
<valueAttachment>
<contentType value="aaaa"/>
<data value="AAAA"/>
</valueAttachment>
</extension>
<extension url="urn:patientext:moreext">
<extension url="urn:patientext:moreext:1">
<valueString value="str1"/>
</extension>
<extension url="urn:patientext:moreext:2">
<valueString value="str2"/>
</extension>
</extension>
<modifierExtension url="urn:modext">
<valueDate value="2011-01-02"/>
</modifierExtension>
<identifier>
<use value="usual"/>
<system value="urn:oid:1.2.36.146.595.217.0.1"/>
<value value="12345"/>
<period>
<start value="2001-05-06"/>
</period>
<assigner>
<display value="Acme Healthcare"/>
</assigner>
</identifier>
<active value="true"/>
<name>
<use value="official"/>
<family value="Chalmers"/>
<given value="Peter"/>
<given value="James"/>
</name>
<name>
<use value="usual"/>
<given value="Jim"/>
</name>
<telecom>
<use value="home"/>
</telecom>
<telecom>
<system value="phone"/>
<value value="(03) 5555 6473"/>
<use value="work"/>
</telecom>
<gender value="male"/>
<birthDate value="1974-12-25"/>
<deceasedBoolean value="false"/>
<address>
<use value="home"/>
<line value="534 Erewhon St"/>
<city value="PleasantVille"/>
<state value="Vic"/>
<postalCode value="3999"/>
</address>
<address>
<use value="old"/>
<line value="SecondAddress"/>
</address>
<contact>
<relationship>
<coding>
<system value="http://hl7.org/fhir/patient-contact-relationship"/>
<code value="partner"/>
</coding>
</relationship>
<name>
<family value="du">
<extension url="http://hl7.org/fhir/Profile/iso-21090#qualifier">
<valueCode value="VV"/>
</extension>
</family>
<family value="Marché"/>
<given value="Bénédicte"/>
</name>
<telecom>
<system value="phone"/>
<value value="+33 (237) 998327"/>
</telecom>
</contact>
<managingOrganization>
<reference value="Organization/1"/>
</managingOrganization>
</Patient>

58
hapi-fhir-karaf-integration-tests/src/test/resources/extension-on-line.txt Normal file
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{
"resourceType": "Patient",
"name": [
{
"family": "Doe",
"given": [
"John",
"W."
]
}
],
"gender": "male",
"birthDate": "2012-02-14",
"address": [
{
"use": "home",
"line": [
"535 Sheppard Avenue West, Unit 1907",
"RR 66, Station A, RPO 123"
],
"_line": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-houseNumber",
"valueString": "535"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-streetName",
"valueString": "Sheppard"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-streetNameType",
"valueString": "Avenue"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-direction",
"valueString": "West"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-unitID",
"valueString": "1907"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-postBox",
"valueString": "1234"
}
]
}
],
"city": "Toronto",
"state": "ON",
"postalCode": "M3H4X8"
}
]
}

60
hapi-fhir-karaf-integration-tests/src/test/resources/patient-example-dicom.json Normal file
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{
"resourceType": "Patient",
"id": "dicom",
"text": {
"status": "generated",
"div": "<div> Patient MINT_TEST, ID = MINT1234. Age = 56y, Size =\n 1.83m, Weight = 72.58kg </div>"
},
"http://nema.org/fhir/extensions#0010:1010": [
{
"valueQuantity": {
"value": 56,
"units": "Y"
}
}
],
"http://nema.org/fhir/extensions#0010:1020": [
{
"valueQuantity": {
"value": 1.83,
"units": "m"
}
}
],
"http://nema.org/fhir/extensions#0010:1030": [
{
"valueQuantity": {
"value": 72.58,
"units": "kg"
}
}
],
"identifier": [
{
"system": "http://nema.org/examples/patients",
"value": "MINT1234"
}
],
"name": [
{
"family": [
"MINT_TEST"
]
}
],
"gender": "male",
"_gender": {
"http://nema.org/examples/extensions#gender": [
{
"valueCoding": {
"system": "http://nema.org/examples/gender",
"code": "M"
}
}
]
},
"managingOrganization": {
"reference": "Organization/1"
},
"active": true
}

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<QuestionnaireResponse xmlns="http://hl7.org/fhir">
<identifier>
<value value="1234567890"/>
</identifier>
<questionnaire>
<reference value="Questionnaire/q_jon"/>
</questionnaire>
<status value="completed"/>
<subject>
<reference value="http://fhirtest.uhn.ca/baseDstu3/Patient/proband"/>
</subject>
<author>
<reference value="http://fhirtest.uhn.ca/baseDstu3/Practitioner/f007"/>
</author>
<authored value="2016-01-08"/>
<item>
<linkId value="root"/>
<item>
<linkId value="g1"/>
<text value="CLINICAL INFORMATION"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="1.1"/>
</extension>
<linkId value="1.1"/>
<text value="Patient Clinical Information"/>
<answer>
<valueString value="Previous chest X-RAY was suspicious. Heavy smoker, 15 pack years."/>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="1.2"/>
</extension>
<linkId value="1.2"/>
<text value="Previous Examination (Date and Modality)"/>
<answer>
<valueString value="Chest XR - September 23, 2015"/>
</answer>
</item>
</item>
<item>
<linkId value="g2"/>
<text value="IMAGING PROCEDURE DESCRIPTION"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="2.1"/>
</extension>
<linkId value="2.1"/>
<text value="Overall Image Quality:"/>
<answer>
<valueCoding>
<code value="2.1a"/>
<display value="Adequate"/>
</valueCoding>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="2.2"/>
</extension>
<linkId value="2.2"/>
<text value="Intravenous Contrast Used?"/>
<answer>
<valueBoolean value="false"/>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="2.3"/>
</extension>
<linkId value="2.3"/>
<text value="Additional Comments"/>
<answer>
<valueString value="n/a."/>
</answer>
</item>
</item>
<item>
<linkId value="g3"/>
<text value="FINDINGS"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3"/>
</extension>
<linkId value="g3.0"/>
<text value="T Category"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.1"/>
</extension>
<linkId value="g3.1"/>
<text value="Location of Main Nodule/Mass (Primary tumor, or Reference tumor)"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.1.1"/>
</extension>
<linkId value="q3.1.1"/>
<text value="Location of main nodule/mass:"/>
<answer>
<valueCoding>
<code value="3.1.1a"/>
<display value="Peripheral"/>
</valueCoding>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.1.2"/>
</extension>
<linkId value="3.1.2"/>
<answer>
<valueString value="Right Upper Lung, Posterior segment."/>
</answer>
</item>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.2"/>
</extension>
<linkId value="g3.2"/>
<text value="Size and characteristics of main nodule/mass"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.2.1"/>
</extension>
<linkId value="3.2.1"/>
<text value="Size of the nodule/mass:"/>
<answer>
<valueCoding>
<code value="3.2.1a"/>
<display value="Solid nodule/mass"/>
</valueCoding>
</answer>
<item><!-- Measurement, image, series, etc for all 3 answer choices goes here. Conditonal. -->
<linkId value="g3.2.1"/>
<item><!-- Group for answer choice a -->
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-enableWhen"><!-- Note that this extension is at the group level. -->
<extension url="#question">
<valueString value="3.2.1"/>
</extension>
<extension url="#answer">
<valueCoding>
<code value="3.2.1a"/>
</valueCoding>
</extension>
</extension>
<linkId value="g3.2.1a"/>
<item>
<linkId value="3.2.1a"/>
<text value="largest dimension:"/>
<answer>
<valueInteger value="20"/>
</answer>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl">
<valueCodeableConcept>
<coding>
<system value="http://hl7.org/fhir/ValueSet/questionnaire-item-control"/>
<code value="unit"/>
</coding>
</valueCodeableConcept>
</extension>
<text value="mm"/>
</item>
</item>
<item>
<linkId value="3.2.1a.image"/>
<text value="image"/>
<answer>
<valueString value="32"/>
</answer>
</item>
<item>
<linkId value="3.2.1a.series"/>
<text value="series"/>
<answer>
<valueString value="3"/>
</answer>
</item>
</item>
</item>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.2.2"/>
</extension>
<linkId value="3.2.2"/>
<text value="Plane in which the mass was measured:"/>
<answer>
<valueCoding>
<code value="3.2.2a"/>
<display value="Axial"/>
</valueCoding>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.2.3"/>
</extension>
<linkId value="3.2.3"/>
<answer>
<valueString value="Solid attenuation of mass, margins spiculated."/>
</answer>
</item>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.3"/>
</extension>
<linkId value="g3.3"/>
<text value="Structures directly involved"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.3.1"/>
</extension>
<linkId value="3.3.1"/>
<text value="State if there is bronchial involvement:"/>
<answer>
<valueCoding>
<code value="3.3.1b"/>
<display value="No"/>
</valueCoding>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.3.2"/>
</extension>
<linkId value="3.3.2"/>
<text value="Is there direct involvement of any other anatomical structures?"/>
<answer>
<valueBoolean value="false"/>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.3.3"/>
</extension>
<linkId value="3.3.3"/>
<text value="Are there additional suspicious pulmonary nodules?"/>
<answer>
<valueBoolean value="false"/>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="3.3.4"/>
</extension>
<linkId value="3.3.4"/>
<text value="Other notable intrathoracic findings (eg lymphangitis carcinomatosis):"/>
<answer>
<valueString value="n/a"/>
</answer>
</item>
</item>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="4"/>
</extension>
<linkId value="4.0"/>
<text value="N Category"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="4.1"/>
</extension>
<linkId value="4.1"/>
<text value="Are there enlarged lymph nodes?"/>
<answer>
<valueBoolean value="false"/>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="4.2"/>
</extension>
<linkId value="4.2"/>
<text value="Other notable findings:"/>
<answer>
<valueString value="Liner / scar atelectasis lingua, anterior segment of right upper lobe and bilateral lower lobes."/>
</answer>
</item>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="5"/>
</extension>
<linkId value="5.0"/>
<text value="M Category (Suspicious Extrathoracic Findings (M1b))"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="5.1"/>
</extension>
<linkId value="5.1"/>
<text value="Are there suspicious extrathoracic findings?"/>
<answer>
<valueBoolean value="true"/>
</answer>
<item>
<linkId value="g5.1.yes"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-enableWhen">
<extension url="#question">
<valueString value="5.1"/>
</extension>
<extension url="#answer">
<valueBoolean value="true"/>
</extension>
</extension>
<linkId value="5.1.yes"/>
<text value="Applicable Structures and Descriptions:"/>
<answer>
<valueCoding>
<code value="5.1.yes.d"/>
<display value="Other"/>
</valueCoding>
</answer>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-enableWhen">
<extension url="#question">
<valueString value="5.1.yes"/>
</extension>
<extension url="#answer">
<valueCoding>
<code value="5.1.yes.d"/>
</valueCoding>
</extension>
</extension>
<linkId value="5.1.yes.d.description"/>
<text value="Description of structures:"/>
<answer>
<valueString value="3 cm calcified thyroid nodule on TUL left."/>
</answer>
</item>
</item>
</item>
</item>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="6"/>
</extension>
<linkId value="6.0"/>
<text value="Additional Findings"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="6.1"/>
</extension>
<linkId value="6.1"/>
<text value="Are there additional findings?"/>
<answer>
<valueBoolean value="true"/>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="6.2"/>
</extension>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-enableWhen">
<extension url="#question">
<valueString value="6.1"/>
</extension>
<extension url="#answer">
<valueBoolean value="true"/>
</extension>
</extension>
<linkId value="6.2"/>
<text value="Findings and Descriptions:"/>
<answer>
<valueString value="Oligemic changes in right upper lobe from possible old pulmonary embolus."/>
</answer>
</item>
</item>
</item>
<item>
<linkId value="g7"/>
<text value="IMPRESSIONS"/>
<item>
<linkId value="g7.1"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="7.1"/>
</extension>
<linkId value="7.1"/>
<text value="Impression/Summary:"/>
<answer>
<valueString value="Spiculated mass in posterior segment of right upper lobe that has increasing size from 16 to 20 mm."/>
</answer>
</item>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="7.2"/>
</extension>
<linkId value="g7.2"/>
<text value="Radiologic Staging (TNM Version – 7th edition)"/>
<item>
<linkId value="g7.20"/>
<text value="If this is a biopsy proven carcinoma, the preliminary radiologic stage is:"/>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="i)"/>
</extension>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-questionControl" >
<valueCodeableConcept>
<coding>
<code value="radio-button"/>
<display value="Radio Button"/>
</coding>
</valueCodeableConcept>
</extension>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-choiceOrientation" >
<valueCode value="horizontal"/>
</extension>
<linkId value="7.2i"/>
<text value="Primary Tumour (T):"/>
<answer>
<valueCoding>
<code value="T1a"/>
<display value="T1a"/>
</valueCoding>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="ii)"/>
</extension>
<linkId value="7.2ii"/>
<text value="Regional Lymph Nodes (N):"/>
<answer>
<valueCoding>
<code value="N0"/>
<display value="N0"/>
</valueCoding>
</answer>
</item>
<item>
<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-label">
<valueString value="iii)"/>
</extension>
<linkId value="7.2iii"/>
<text value="Distant Metastasis (M):"/>
<answer>
<valueCoding>
<code value="M0"/>
<display value="M0"/>
</valueCoding>
</answer>
</item>
</item>
</item>
</item>
</item>
</QuestionnaireResponse>

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hapi-fhir-karaf-integration-tests/src/test/resources/r4/bundle-with-no-type.json Normal file
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{
"resourceType": "Bundle",
"entry": [
{
"fullUrl": "http://localhost:5555/phr/baseDstu3/Person/PERSON1",
"resource": {
"resourceType": "Person",
"id": "PERSON1",
"meta": {
"versionId": "1",
"lastUpdated": "2017-08-17T16:19:40.109+03:00"
},
"identifier": [
{
"value": "081181-9984"
}
],
"name": [
{
"text": "Anna Testi",
"family": "Testi",
"given": [
"Anna"
]
},
{
"family": "asdfas"
}
],
"telecom": [
{
"use": "home"
},
{
"system": "phone",
"value": "(044) 1234567",
"use": "work"
}
],
"gender": "female",
"birthDate": "1981-11-08",
"address": [
{
"line": [
"Osuuspankkitie 2"
],
"city": "Helsinki",
"postalCode": "00120",
"country": "Suomi"
},
{
"city": "Blo-49847020"
}
],
"active": true,
"link": [
{
"target": {
"reference": "Patient/PATIENT1",
"display": "Anna Testi"
}
}
]
},
"request": {
"method": "PUT",
"url": "Person/PERSON1",
"ifMatch": "1"
}
}
]
}

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hapi-fhir-karaf-integration-tests/src/test/resources/r4/diagnosticreport-example-gingival-mass.json Normal file
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hapi-fhir-karaf-integration-tests/src/test/resources/sample-document.xml Normal file
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hapi-fhir-karaf-integration-tests/src/test/resources/testscript-search.json Normal file
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{
"resourceType": "TestScript",
"id": "search",
"text": {
"status": "generated",
"div": "<div><p><b>Generated Narrative with Details</b></p><p><b>id</b>: search</p><p><b>name</b>: Read, Search and Conditional Create and Delete</p><p><b>description</b>: Test Script for testing search, read, and conditional create and delete</p><h3>Fixtures</h3><table><tr><td>-</td><td><b>Resource</b></td></tr><tr><td>*</td><td><a>Patient/patient-example.xml</a></td></tr></table><blockquote><p><b>variable</b></p><p><b>name</b>: V1</p><p><b>sourceId</b>: R1</p><p><b>headerField</b>: Location</p></blockquote><blockquote><p><b>variable</b></p><p><b>name</b>: V2</p><p><b>sourceId</b>: R3</p><p><b>path</b>: fhir:Patient/fhir:name/fhir:given/@value</p></blockquote><blockquote><p><b>setup</b></p><blockquote><p><b>action</b></p><h3>Operations</h3><table><tr><td>-</td><td><b>Type</b></td><td><b>Resource</b></td><td><b>Params</b></td></tr><tr><td>*</td><td>delete</td><td>Patient</td><td>given=John&amp;family=Doe</td></tr></table></blockquote></blockquote><blockquote><p><b>test</b></p><p><b>name</b>: Create</p><p><b>description</b>: Create, read, search, conditional create, conditional delete.</p><blockquote><p><b>metadata</b></p><h3>Links</h3><table><tr><td>-</td><td><b>Url</b></td><td><b>Description</b></td></tr><tr><td>*</td><td><a>http://hl7.org/implement/standards/FHIR-Develop/patient.html</a></td><td>FHIR Patient</td></tr></table><blockquote><p><b>operation</b></p><p><b>type</b>: create</p><p><b>resource</b>: Patient</p><p><b>description</b>: Conditional Create Operation</p><p><b>link</b>: <a>http://hl7-fhir.github.io/http.html#2.1.0.13.1</a></p><p><b>required</b>: true</p><p><b>validated</b>: true</p></blockquote><blockquote><p><b>operation</b></p><p><b>type</b>: delete</p><p><b>resource</b>: Patient</p><p><b>description</b>: Conditional Delete Operation</p><p><b>link</b>: <a>http://hl7-fhir.github.io/http.html#2.1.0.12.1</a></p><p><b>required</b>: true</p><p><b>validated</b>: true</p></blockquote><blockquote><p><b>operation</b></p><p><b>type</b>: read</p><p><b>resource</b>: Patient</p><p><b>description</b>: Patient Read Operation</p><p><b>link</b>: <a>http://hl7.org/implement/standards/FHIR-Develop/http.html#read</a></p><p><b>validated</b>: true</p></blockquote><blockquote><p><b>operation</b></p><p><b>type</b>: search</p><p><b>resource</b>: Patient</p><p><b>description</b>: Patient Search Operation</p><p><b>link</b>: <a>http://hl7-fhir.github.io/http.html#2.1.0.14</a></p><p><b>validated</b>: true</p></blockquote></blockquote><blockquote><p><b>action</b></p><h3>Operations</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Operations</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Operations</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Operations</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Operations</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Operations</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Operations</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote></blockquote></div>"
},
"url": "http://hl7.org/fhir/TestScript/search",
"name": "Read, Search and Conditional Create and Delete",
"status": "draft",
"description": "Test Script for testing search, read, and conditional create and delete",
"metadata": {
"capability": [
{
"required": true,
"description": "Patient Create and Read Operations",
"link": [
"http://hl7.org/implement/standards/FHIR-Develop/http.html#create",
"http://hl7.org/implement/standards/FHIR-Develop/http.html#read"
],
"conformance": {
"reference": "Conformance/example"
}
},
{
"required": true,
"description": "Patient Conditional Delete Operation",
"link": [
"http://hl7-fhir.github.io/http.html#2.1.0.12.1"
],
"conformance": {
"reference": "Conformance/example"
}
},
{
"required": true,
"description": "Patient Conditional Create Operation",
"link": [
"http://hl7-fhir.github.io/http.html#2.1.0.13.1"
],
"conformance": {
"reference": "Conformance/example"
}
}
]
},
"fixture": [
{
"id": "example-patient",
"resource": {
"reference": "Patient/example"
}
}
],
"variable": [
{
"name": "V1",
"headerField": "Location",
"sourceId": "R1"
},
{
"name": "V2",
"path": "fhir:Patient/fhir:name/fhir:given/@value",
"sourceId": "R3"
},
{
"name": "DefaultValue",
"defaultValue": "Replace at Runtime"
}
],
"setup": {
"action": [
{
"fhir_comments": [
" Conditional Delete "
],
"operation": {
"type": {
"code": "delete"
},
"resource": "Patient",
"params": "given=John&family=Doe"
}
}
]
},
"test": [
{
"id": "Test1",
"name": "Create",
"description": "Create, read, search, conditional create, conditional delete.",
"metadata": {
"link": [
{
"url": "http://hl7.org/implement/standards/FHIR-Develop/patient.html",
"description": "FHIR Patient"
}
],
"capability": [
{
"validated": true,
"description": "Patient Search Operation",
"link": [
"http://hl7.org/implement/standards/FHIR-Develop/http.html#search"
],
"conformance": {
"reference": "Conformance/example"
}
}
]
},
"action": [
{
"fhir_comments": [
" Create the patient using fixture "
],
"operation": {
"type": {
"code": "create"
},
"sourceId": "example-patient"
}
},
{
"assert": {
"responseCode": "201"
}
},
{
"fhir_comments": [
" Patient search by name. Save the responseBody in 'F1' fixture.\n\t\t\t\tSave the responseHeader in H1 "
],
"operation": {
"type": {
"code": "search"
},
"resource": "Patient",
"contentType": "json",
"params": "?given=John&family=Doe",
"responseId": "R1"
}
},
{
"fhir_comments": [
" Verify that the Location in response-header is valid "
],
"assert": {
"headerField": "Location",
"operator": "notEmpty",
"warningOnly": true
}
},
{
"fhir_comments": [
" Verify that the birthdate got persisted and is being returned properly "
],
"assert": {
"operator": "equals",
"path": "fhir:Patient/fhir:birthDate/@value",
"sourceId": "R1",
"value": "1974-12-31"
}
},
{
"fhir_comments": [
" Verify that the navigation links are valid "
],
"assert": {
"navigationLinks": true,
"warningOnly": true
}
},
{
"fhir_comments": [
" Use the Location returned earlier to grab the resource\n\t\t \t\tto verify that Location was pointing to correct resource. "
],
"operation": {
"type": {
"code": "search"
},
"accept": "json",
"responseId": "R2",
"url": "${V1}"
}
},
{
"assert": {
"contentType": "json"
}
},
{
"assert": {
"response": "okay"
}
},
{
"fhir_comments": [
" Search for the resource but this time using the birthdate\n\t\t\t\tas a search parameter to make sure search by birthDate works "
],
"operation": {
"type": {
"code": "search"
},
"resource": "Patient",
"accept": "json",
"params": "?given=John&family=Doe&birthdate=1974-12-31",
"responseId": "R3"
}
},
{
"assert": {
"contentType": "json"
}
},
{
"assert": {
"response": "okay"
}
},
{
"fhir_comments": [
" Verify that the birthDate matches expectations "
],
"assert": {
"compareToSourceId": "R2",
"compareToSourcePath": "fhir:Patient/fhir:birthDate/@value",
"path": "fhir:Patient/fhir:birthDate/@value",
"sourceId": "R3"
}
},
{
"fhir_comments": [
" Verify that the name matches expectations "
],
"assert": {
"path": "fhir:Patient/fhir:name/fhir:given/@value",
"sourceId": "R3",
"value": "John"
}
},
{
"fhir_comments": [
" Conditional Create "
],
"operation": {
"type": {
"code": "create"
},
"requestHeader": [
{
"field": "If-None-Exist",
"value": "Patient?given=John&Doe&birthdate=1974-12-31"
}
],
"sourceId": "F1"
}
},
{
"fhir_comments": [
" The response code of 200 verifies that the resource\n\t\t\t\talready exists and did not get created "
],
"assert": {
"responseCode": "200"
}
},
{
"fhir_comments": [
" Conditional Delete "
],
"operation": {
"type": {
"code": "delete"
},
"resource": "Patient",
"params": "?given=John&family=Doe&birthdate=1974-12-31"
}
},
{
"fhir_comments": [
" Search again and make sure the patient has been deleted.\n\t\t \t\t This time perform read by id using variable "
],
"operation": {
"type": {
"code": "read"
},
"resource": "Patient",
"params": "/${V2}"
}
},
{
"assert": {
"responseCode": "410"
}
}
]
}
]
}

18
hapi-fhir-structures-dstu2.1/pom.xml
View File

@ -10,7 +10,7 @@
</parent>
<artifactId>hapi-fhir-structures-dstu2.1</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR Structures - DSTU2.1 (2016May)</name>
@ -273,6 +273,22 @@
<fork>true</fork>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
<Import-Package>
javax.servlet*;resolution:=optional,
*
</Import-Package>
</instructions>
</configuration>
</plugin>
</plugins>
</build>

18
hapi-fhir-structures-dstu2/pom.xml
View File

@ -9,7 +9,7 @@
</parent>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR Structures - DSTU2 (FHIR v1.0.0)</name>
@ -357,6 +357,22 @@
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
<Import-Package>
javax.servlet*;resolution:=optional,
*
</Import-Package>
</instructions>
</configuration>
</plugin>
</plugins>
<pluginManagement>
<plugins>

15
hapi-fhir-structures-dstu3/pom.xml
View File

@ -10,7 +10,7 @@
</parent>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR Structures - DSTU3</name>
@ -28,6 +28,18 @@
<build>
<plugins>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
</instructions>
</configuration>
</plugin>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
@ -268,5 +280,4 @@
<scope>test</scope>
</dependency>
</dependencies>
</project>

18
hapi-fhir-structures-hl7org-dstu2/pom.xml
View File

@ -10,7 +10,7 @@
</parent>
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR Structures - HL7.org DSTU2</name>
@ -272,6 +272,22 @@
<fork>true</fork>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
<Import-Package>
javax.servlet*;resolution:=optional,
*
</Import-Package>
</instructions>
</configuration>
</plugin>
</plugins>
</build>

14
hapi-fhir-structures-r4/pom.xml
View File

@ -10,7 +10,7 @@
</parent>
<artifactId>hapi-fhir-structures-r4</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR Structures - FHIR R4</name>
@ -262,6 +262,18 @@
<fork>true</fork>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
</instructions>
</configuration>
</plugin>
</plugins>
</build>

7
hapi-fhir-utilities/pom.xml
View File

@ -10,7 +10,7 @@
</parent>
<artifactId>hapi-fhir-utilities</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR - Utilities</name>
@ -122,6 +122,11 @@
<fork>true</fork>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
</plugin>
</plugins>
</build>

16
hapi-fhir-validation-resources-dstu2.1/pom.xml
View File

@ -9,7 +9,7 @@
</parent>
<artifactId>hapi-fhir-validation-resources-dstu2.1</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR - Validation Resources DSTU2.1 (2016May)</name>
@ -20,6 +20,20 @@
<filtering>false</filtering>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
</instructions>
</configuration>
</plugin>
</plugins>
</build>
</project>

16
hapi-fhir-validation-resources-dstu2/pom.xml
View File

@ -9,7 +9,7 @@
</parent>
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR - Validation Resources (DSTU2)</name>
@ -20,6 +20,20 @@
<filtering>false</filtering>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
</instructions>
</configuration>
</plugin>
</plugins>
</build>
</project>

16
hapi-fhir-validation-resources-dstu3/pom.xml
View File

@ -9,7 +9,7 @@
</parent>
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR - Validation Resources (DSTU3)</name>
@ -34,6 +34,20 @@
<filtering>false</filtering>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
</instructions>
</configuration>
</plugin>
</plugins>
</build>
</project>

16
hapi-fhir-validation-resources-r4/pom.xml
View File

@ -9,7 +9,7 @@
</parent>
<artifactId>hapi-fhir-validation-resources-r4</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR - Validation Resources (FHIR R4)</name>
@ -34,6 +34,20 @@
<filtering>false</filtering>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
</instructions>
</configuration>
</plugin>
</plugins>
</build>
</project>

14
hapi-fhir-validation/pom.xml
View File

@ -10,7 +10,7 @@
</parent>
<artifactId>hapi-fhir-validation</artifactId>
<packaging>jar</packaging>
<packaging>bundle</packaging>
<name>HAPI FHIR - Validation</name>
@ -246,6 +246,18 @@
<fork>true</fork>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
</instructions>
</configuration>
</plugin>
</plugins>
</build>

28
pom.xml
View File

@ -407,11 +407,19 @@
<scmPubCheckoutDirectory>${user.home}/sites/scm/hapi-fhir</scmPubCheckoutDirectory>
<!-- Dependency Versions -->
<apache_karaf_version>4.1.4</apache_karaf_version>
<commons_codec_version>1.10</commons_codec_version>
<commons_io_version>2.5</commons_io_version>
<commons_lang3_version>3.6</commons_lang3_version>
<derby_version>10.14.1.0</derby_version>
<error_prone_annotations_version>2.0.18</error_prone_annotations_version>
<guava_version>23.0</guava_version>
<gson_version>2.8.1</gson_version>
<jaxb_api_version>2.3.0</jaxb_api_version>
<jaxb_core_version>2.3.0</jaxb_core_version>
<jersey_version>2.25.1</jersey_version>
<jetty_version>9.4.8.v20171121</jetty_version>
<jsr305_version>3.0.2</jsr305_version>
<!--<hibernate_version>5.2.10.Final</hibernate_version>-->
<hibernate_version>5.2.12.Final</hibernate_version>
<hibernate_validator_version>5.4.1.Final</hibernate_validator_version>
@ -422,9 +430,13 @@
<maven_license_plugin_version>1.8</maven_license_plugin_version>
<phloc_schematron_version>2.7.1</phloc_schematron_version>
<phloc_commons_version>4.4.11</phloc_commons_version>
<servicemix_saxon_version>9.5.1-5_1</servicemix_saxon_version>
<servicemix_xmlresolver_version>1.2_5</servicemix_xmlresolver_version>
<spring_version>5.0.3.RELEASE</spring_version>
<spring-boot.version>1.5.6.RELEASE</spring-boot.version>
<stax2_api_version>3.1.4</stax2_api_version>
<thymeleaf-version>3.0.9.RELEASE</thymeleaf-version>
<woodstox_core_asl_version>4.4.1</woodstox_core_asl_version>
<!-- We are aiming to still work on a very old version of SLF4j even though we depend on the newest, just to be nice to users of the API. This version is tested in the hapi-fhir-cobertura. -->
<slf4j_target_version>1.6.0</slf4j_target_version>
@ -508,7 +520,7 @@
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>23.0</version>
<version>${guava_version}</version>
</dependency>
<dependency>
<groupId>com.phloc</groupId>
@ -538,12 +550,12 @@
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.10</version>
<version>${commons_codec_version}</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.5</version>
<version>${commons_io_version}</version>
</dependency>
<dependency>
<groupId>directory-naming</groupId>
@ -590,7 +602,7 @@
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
<version>2.8.1</version>
<version>${gson_version}</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
@ -684,7 +696,7 @@
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.6</version>
<version>${commons_lang3_version}</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
@ -799,7 +811,7 @@
<dependency>
<groupId>org.codehaus.woodstox</groupId>
<artifactId>woodstox-core-asl</artifactId>
<version>4.4.1</version>
<version>${woodstox_core_asl_version}</version>
</dependency>
<dependency>
<groupId>org.ebaysf.web</groupId>
@ -1093,7 +1105,7 @@
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>3.3.0</version>
<version>3.5.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
@ -1926,6 +1938,8 @@
<module>hapi-tinder-plugin</module>
<module>hapi-tinder-test</module>
<module>hapi-fhir-client</module>
<module>hapi-fhir-karaf-features</module>
<module>hapi-fhir-karaf-integration-tests</module>
<module>hapi-fhir-server</module>
<module>hapi-fhir-validation</module>
<!--<module>hapi-fhir-narrativegenerator</module>-->