Speed up unit test
This commit is contained in:
jamesagnew
parent
09b0982df1
commit
6b96fefeb7
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@ -42,381 +42,361 @@ import ca.uhn.fhir.context.FhirContext;
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public class FhirInstanceValidatorTest {
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private static FhirContext ourCtx = FhirContext.forDstu2_1();
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirInstanceValidatorTest.class);
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private DefaultProfileValidationSupport myDefaultValidationSupport = new DefaultProfileValidationSupport();
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private FhirInstanceValidator myInstanceVal;
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private IValidationSupport myMockSupport;
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private static final DefaultProfileValidationSupport VALIDATION_SUPPORT = new DefaultProfileValidationSupport();
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private static FhirContext ourCtx = FhirContext.forDstu2_1();
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirInstanceValidatorTest.class);
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private DefaultProfileValidationSupport myDefaultValidationSupport = VALIDATION_SUPPORT;
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private FhirInstanceValidator myInstanceVal;
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private IValidationSupport myMockSupport;
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private FhirValidator myVal;
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private ArrayList<String> myValidConcepts;
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private Map<String, ValueSetExpansionComponent> mySupportedCodeSystemsForExpansion;
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private FhirValidator myVal;
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private ArrayList<String> myValidConcepts;
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private Map<String, ValueSetExpansionComponent> mySupportedCodeSystemsForExpansion;
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private void addValidConcept(String theSystem, String theCode) {
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myValidConcepts.add(theSystem + "___" + theCode);
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}
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private void addValidConcept(String theSystem, String theCode) {
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myValidConcepts.add(theSystem + "___" + theCode);
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}
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@SuppressWarnings("unchecked")
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@Before
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public void before() {
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myVal = ourCtx.newValidator();
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myVal.setValidateAgainstStandardSchema(false);
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myVal.setValidateAgainstStandardSchematron(false);
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@SuppressWarnings("unchecked")
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@Before
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public void before() {
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myVal = ourCtx.newValidator();
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myVal.setValidateAgainstStandardSchema(false);
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myVal.setValidateAgainstStandardSchematron(false);
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myInstanceVal = new FhirInstanceValidator();
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myVal.registerValidatorModule(myInstanceVal);
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myInstanceVal = new FhirInstanceValidator(VALIDATION_SUPPORT);
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myVal.registerValidatorModule(myInstanceVal);
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mySupportedCodeSystemsForExpansion = new HashMap<String, ValueSet.ValueSetExpansionComponent>();
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mySupportedCodeSystemsForExpansion = new HashMap<String, ValueSet.ValueSetExpansionComponent>();
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myValidConcepts = new ArrayList<String>();
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myValidConcepts = new ArrayList<String>();
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myMockSupport = mock(IValidationSupport.class);
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when(myMockSupport.expandValueSet(any(FhirContext.class), any(ConceptSetComponent.class))).thenAnswer(new Answer<ValueSetExpansionComponent>() {
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@Override
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public ValueSetExpansionComponent answer(InvocationOnMock theInvocation) throws Throwable {
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ConceptSetComponent arg = (ConceptSetComponent)theInvocation.getArguments()[0];
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ValueSetExpansionComponent retVal = mySupportedCodeSystemsForExpansion.get(arg.getSystem());
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if (retVal == null) {
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retVal = myDefaultValidationSupport.expandValueSet(any(FhirContext.class), arg);
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}
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ourLog.info("expandValueSet({}) : {}", new Object[] { theInvocation.getArguments()[0], retVal });
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return retVal;
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}
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});
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when(myMockSupport.isCodeSystemSupported(any(FhirContext.class), any(String.class))).thenAnswer(new Answer<Boolean>() {
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@Override
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public Boolean answer(InvocationOnMock theInvocation) throws Throwable {
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boolean retVal = mySupportedCodeSystemsForExpansion.containsKey(theInvocation.getArguments()[0]);
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ourLog.info("isCodeSystemSupported({}) : {}", new Object[] { theInvocation.getArguments()[0], retVal });
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return retVal;
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}
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});
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when(myMockSupport.fetchResource(any(FhirContext.class), any(Class.class), any(String.class)))
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.thenAnswer(new Answer<IBaseResource>() {
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@Override
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public IBaseResource answer(InvocationOnMock theInvocation) throws Throwable {
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IBaseResource retVal = myDefaultValidationSupport.fetchResource(
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(FhirContext) theInvocation.getArguments()[0], (Class<IBaseResource>) theInvocation.getArguments()[1],
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(String) theInvocation.getArguments()[2]);
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ourLog.info("fetchResource({}, {}) : {}",
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new Object[] { theInvocation.getArguments()[1], theInvocation.getArguments()[2], retVal });
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return retVal;
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}
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});
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when(myMockSupport.validateCode(any(FhirContext.class), any(String.class), any(String.class), any(String.class)))
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.thenAnswer(new Answer<CodeValidationResult>() {
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@Override
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public CodeValidationResult answer(InvocationOnMock theInvocation) throws Throwable {
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FhirContext ctx = (FhirContext) theInvocation.getArguments()[0];
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String system = (String) theInvocation.getArguments()[1];
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String code = (String) theInvocation.getArguments()[2];
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CodeValidationResult retVal;
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if (myValidConcepts.contains(system + "___" + code)) {
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retVal = new CodeValidationResult(new ConceptDefinitionComponent(new CodeType(code)));
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} else {
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retVal = myDefaultValidationSupport.validateCode(ctx, system, code, (String) theInvocation.getArguments()[2]);
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}
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ourLog.info("validateCode({}, {}, {}) : {}",
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new Object[] { system, code, (String) theInvocation.getArguments()[2], retVal });
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return retVal;
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}
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});
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when(myMockSupport.fetchCodeSystem(any(FhirContext.class), any(String.class))).thenAnswer(new Answer<ValueSet>() {
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@Override
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public ValueSet answer(InvocationOnMock theInvocation) throws Throwable {
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ValueSet retVal = myDefaultValidationSupport.fetchCodeSystem((FhirContext) theInvocation.getArguments()[0],(String) theInvocation.getArguments()[1]);
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ourLog.info("fetchCodeSystem({}) : {}", new Object[] { (String) theInvocation.getArguments()[1], retVal });
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return retVal;
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}
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});
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myMockSupport = mock(IValidationSupport.class);
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when(myMockSupport.expandValueSet(any(FhirContext.class), any(ConceptSetComponent.class))).thenAnswer(new Answer<ValueSetExpansionComponent>() {
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@Override
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public ValueSetExpansionComponent answer(InvocationOnMock theInvocation) throws Throwable {
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ConceptSetComponent arg = (ConceptSetComponent) theInvocation.getArguments()[0];
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ValueSetExpansionComponent retVal = mySupportedCodeSystemsForExpansion.get(arg.getSystem());
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if (retVal == null) {
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retVal = myDefaultValidationSupport.expandValueSet(any(FhirContext.class), arg);
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}
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ourLog.info("expandValueSet({}) : {}", new Object[] { theInvocation.getArguments()[0], retVal });
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return retVal;
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}
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});
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when(myMockSupport.isCodeSystemSupported(any(FhirContext.class), any(String.class))).thenAnswer(new Answer<Boolean>() {
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@Override
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public Boolean answer(InvocationOnMock theInvocation) throws Throwable {
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boolean retVal = mySupportedCodeSystemsForExpansion.containsKey(theInvocation.getArguments()[0]);
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ourLog.info("isCodeSystemSupported({}) : {}", new Object[] { theInvocation.getArguments()[0], retVal });
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return retVal;
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}
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});
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when(myMockSupport.fetchResource(any(FhirContext.class), any(Class.class), any(String.class))).thenAnswer(new Answer<IBaseResource>() {
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@Override
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public IBaseResource answer(InvocationOnMock theInvocation) throws Throwable {
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IBaseResource retVal = myDefaultValidationSupport.fetchResource((FhirContext) theInvocation.getArguments()[0], (Class<IBaseResource>) theInvocation.getArguments()[1], (String) theInvocation.getArguments()[2]);
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ourLog.info("fetchResource({}, {}) : {}", new Object[] { theInvocation.getArguments()[1], theInvocation.getArguments()[2], retVal });
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return retVal;
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}
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});
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when(myMockSupport.validateCode(any(FhirContext.class), any(String.class), any(String.class), any(String.class))).thenAnswer(new Answer<CodeValidationResult>() {
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@Override
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public CodeValidationResult answer(InvocationOnMock theInvocation) throws Throwable {
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FhirContext ctx = (FhirContext) theInvocation.getArguments()[0];
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String system = (String) theInvocation.getArguments()[1];
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String code = (String) theInvocation.getArguments()[2];
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CodeValidationResult retVal;
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if (myValidConcepts.contains(system + "___" + code)) {
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retVal = new CodeValidationResult(new ConceptDefinitionComponent(new CodeType(code)));
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} else {
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retVal = myDefaultValidationSupport.validateCode(ctx, system, code, (String) theInvocation.getArguments()[2]);
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}
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ourLog.info("validateCode({}, {}, {}) : {}", new Object[] { system, code, (String) theInvocation.getArguments()[2], retVal });
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return retVal;
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}
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});
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when(myMockSupport.fetchCodeSystem(any(FhirContext.class), any(String.class))).thenAnswer(new Answer<ValueSet>() {
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@Override
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public ValueSet answer(InvocationOnMock theInvocation) throws Throwable {
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ValueSet retVal = myDefaultValidationSupport.fetchCodeSystem((FhirContext) theInvocation.getArguments()[0], (String) theInvocation.getArguments()[1]);
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ourLog.info("fetchCodeSystem({}) : {}", new Object[] { (String) theInvocation.getArguments()[1], retVal });
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return retVal;
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}
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});
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}
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}
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private List<SingleValidationMessage> logResultsAndReturnNonInformationalOnes(ValidationResult theOutput) {
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List<SingleValidationMessage> retVal = new ArrayList<SingleValidationMessage>();
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private List<SingleValidationMessage> logResultsAndReturnNonInformationalOnes(ValidationResult theOutput) {
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List<SingleValidationMessage> retVal = new ArrayList<SingleValidationMessage>();
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int index = 0;
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for (SingleValidationMessage next : theOutput.getMessages()) {
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ourLog.info("Result {}: {} - {} - {}",
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new Object[] { index, next.getSeverity(), next.getLocationString(), next.getMessage() });
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index++;
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int index = 0;
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for (SingleValidationMessage next : theOutput.getMessages()) {
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ourLog.info("Result {}: {} - {} - {}", new Object[] { index, next.getSeverity(), next.getLocationString(), next.getMessage() });
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index++;
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if (next.getSeverity() != ResultSeverityEnum.INFORMATION) {
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retVal.add(next);
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}
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}
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if (next.getSeverity() != ResultSeverityEnum.INFORMATION) {
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retVal.add(next);
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}
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}
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return retVal;
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}
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return retVal;
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}
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private List<SingleValidationMessage> logResultsAndReturnAll(ValidationResult theOutput) {
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List<SingleValidationMessage> retVal = new ArrayList<SingleValidationMessage>();
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private List<SingleValidationMessage> logResultsAndReturnAll(ValidationResult theOutput) {
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List<SingleValidationMessage> retVal = new ArrayList<SingleValidationMessage>();
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int index = 0;
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for (SingleValidationMessage next : theOutput.getMessages()) {
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ourLog.info("Result {}: {} - {} - {}",
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new Object[] { index, next.getSeverity(), next.getLocationString(), next.getMessage() });
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index++;
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int index = 0;
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for (SingleValidationMessage next : theOutput.getMessages()) {
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ourLog.info("Result {}: {} - {} - {}", new Object[] { index, next.getSeverity(), next.getLocationString(), next.getMessage() });
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index++;
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retVal.add(next);
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}
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retVal.add(next);
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}
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return retVal;
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}
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return retVal;
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}
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@Rule
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public TestRule watcher = new TestWatcher() {
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protected void starting(Description description) {
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ourLog.info("Starting test: " + description.getMethodName());
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}
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};
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@Test
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public void testValidateRawJsonResource() {
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// @formatter:off
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@Rule
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public TestRule watcher = new TestWatcher() {
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protected void starting(Description description) {
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ourLog.info("Starting test: " + description.getMethodName());
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}
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};
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@Test
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public void testValidateRawJsonResource() {
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// @formatter:off
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String input = "{" + "\"resourceType\":\"Patient\"," + "\"id\":\"123\"" + "}";
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// @formatter:on
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ValidationResult output = myVal.validateWithResult(input);
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assertEquals(output.toString(), 0, output.getMessages().size());
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}
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ValidationResult output = myVal.validateWithResult(input);
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assertEquals(output.toString(), 0, output.getMessages().size());
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}
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@Test
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public void testValidateRawJsonResourceBadAttributes() {
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// @formatter:off
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@Test
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public void testValidateRawJsonResourceBadAttributes() {
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// @formatter:off
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String input = "{" + "\"resourceType\":\"Patient\"," + "\"id\":\"123\"," + "\"foo\":\"123\"" + "}";
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// @formatter:on
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ValidationResult output = myVal.validateWithResult(input);
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assertEquals(output.toString(), 1, output.getMessages().size());
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ourLog.info(output.getMessages().get(0).getLocationString());
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ourLog.info(output.getMessages().get(0).getMessage());
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assertEquals("/foo", output.getMessages().get(0).getLocationString());
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assertEquals("Element is unknown or does not match any slice", output.getMessages().get(0).getMessage());
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}
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ValidationResult output = myVal.validateWithResult(input);
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assertEquals(output.toString(), 1, output.getMessages().size());
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ourLog.info(output.getMessages().get(0).getLocationString());
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ourLog.info(output.getMessages().get(0).getMessage());
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assertEquals("/foo", output.getMessages().get(0).getLocationString());
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assertEquals("Element is unknown or does not match any slice", output.getMessages().get(0).getMessage());
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}
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@Test
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public void testValidateRawXmlResource() {
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// @formatter:off
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@Test
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public void testValidateRawXmlResource() {
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// @formatter:off
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String input = "<Patient xmlns=\"http://hl7.org/fhir\">" + "<id value=\"123\"/>" + "</Patient>";
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// @formatter:on
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ValidationResult output = myVal.validateWithResult(input);
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assertEquals(output.toString(), 0, output.getMessages().size());
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}
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ValidationResult output = myVal.validateWithResult(input);
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assertEquals(output.toString(), 0, output.getMessages().size());
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}
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@Test
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public void testValidateRawXmlResourceBadAttributes() {
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// @formatter:off
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@Test
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public void testValidateRawXmlResourceBadAttributes() {
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// @formatter:off
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String input = "<Patient xmlns=\"http://hl7.org/fhir\">" + "<id value=\"123\"/>" + "<foo value=\"222\"/>"
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+ "</Patient>";
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// @formatter:on
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ValidationResult output = myVal.validateWithResult(input);
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assertEquals(output.toString(), 1, output.getMessages().size());
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ourLog.info(output.getMessages().get(0).getLocationString());
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ourLog.info(output.getMessages().get(0).getMessage());
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assertEquals("/f:Patient/f:foo", output.getMessages().get(0).getLocationString());
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assertEquals("Element is unknown or does not match any slice", output.getMessages().get(0).getMessage());
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}
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ValidationResult output = myVal.validateWithResult(input);
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assertEquals(output.toString(), 1, output.getMessages().size());
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ourLog.info(output.getMessages().get(0).getLocationString());
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ourLog.info(output.getMessages().get(0).getMessage());
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assertEquals("/f:Patient/f:foo", output.getMessages().get(0).getLocationString());
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assertEquals("Element is unknown or does not match any slice", output.getMessages().get(0).getMessage());
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}
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@Test
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public void testValidateResourceFailingInvariant() {
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Observation input = new Observation();
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@Test
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public void testValidateResourceFailingInvariant() {
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Observation input = new Observation();
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// Has a value, but not a status (which is required)
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input.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
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input.setValue(new StringType("AAA"));
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// Has a value, but not a status (which is required)
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input.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
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input.setValue(new StringType("AAA"));
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ValidationResult output = myVal.validateWithResult(input);
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assertThat(output.getMessages().size(), greaterThan(0));
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assertEquals("Element '/f:Observation.status': minimum required = 1, but only found 0",
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output.getMessages().get(0).getMessage());
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ValidationResult output = myVal.validateWithResult(input);
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assertThat(output.getMessages().size(), greaterThan(0));
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assertEquals("Element '/f:Observation.status': minimum required = 1, but only found 0", output.getMessages().get(0).getMessage());
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}
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}
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/**
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* See #216
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*/
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@Test
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public void testValidateRawXmlInvalidChoiceName() throws Exception {
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String input = IOUtils
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.toString(FhirInstanceValidator.class.getResourceAsStream("/medicationstatement_invalidelement.xml"));
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ValidationResult output = myVal.validateWithResult(input);
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/**
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* See #216
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*/
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@Test
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public void testValidateRawXmlInvalidChoiceName() throws Exception {
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String input = IOUtils.toString(FhirInstanceValidator.class.getResourceAsStream("/medicationstatement_invalidelement.xml"));
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ValidationResult output = myVal.validateWithResult(input);
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List<SingleValidationMessage> res = logResultsAndReturnAll(output);
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ourLog.info(res.toString());
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for (SingleValidationMessage nextMessage : res) {
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if (nextMessage.getSeverity() == ResultSeverityEnum.ERROR) {
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fail(nextMessage.toString());
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}
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}
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// TODO: we should really not have any errors at all here, but for
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// now we aren't validating snomed codes correctly
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// assertEquals(output.toString(), 0, res.size());
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List<SingleValidationMessage> res = logResultsAndReturnAll(output);
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ourLog.info(res.toString());
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}
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for (SingleValidationMessage nextMessage : res) {
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if (nextMessage.getSeverity() == ResultSeverityEnum.ERROR) {
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fail(nextMessage.toString());
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}
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}
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@Test
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public void testValidateResourceContainingProfileDeclarationDoesntResolve() {
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addValidConcept("http://loinc.org", "12345");
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// TODO: we should really not have any errors at all here, but for
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// now we aren't validating snomed codes correctly
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// assertEquals(output.toString(), 0, res.size());
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Observation input = new Observation();
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input.getMeta().addProfile("http://foo/myprofile");
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}
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input.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
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input.setStatus(ObservationStatus.FINAL);
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@Test
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public void testValidateResourceContainingProfileDeclarationDoesntResolve() {
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addValidConcept("http://loinc.org", "12345");
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myInstanceVal.setValidationSupport(myMockSupport);
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ValidationResult output = myVal.validateWithResult(input);
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List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
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assertEquals(errors.toString(), 1, errors.size());
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assertEquals("StructureDefinition reference \"http://foo/myprofile\" could not be resolved",
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errors.get(0).getMessage());
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}
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Observation input = new Observation();
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input.getMeta().addProfile("http://foo/myprofile");
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@Test
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public void testValidateResourceContainingProfileDeclaration() {
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||||
addValidConcept("http://loinc.org", "12345");
|
||||
input.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
|
||||
Observation input = new Observation();
|
||||
input.getMeta().addProfile("http://hl7.org/fhir/StructureDefinition/devicemetricobservation");
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
|
||||
assertEquals(errors.toString(), 1, errors.size());
|
||||
assertEquals("StructureDefinition reference \"http://foo/myprofile\" could not be resolved", errors.get(0).getMessage());
|
||||
}
|
||||
|
||||
input.addIdentifier().setSystem("http://acme").setValue("12345");
|
||||
input.getEncounter().setReference("http://foo.com/Encounter/9");
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
|
||||
@Test
|
||||
public void testValidateResourceContainingProfileDeclaration() {
|
||||
addValidConcept("http://loinc.org", "12345");
|
||||
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
|
||||
Observation input = new Observation();
|
||||
input.getMeta().addProfile("http://hl7.org/fhir/StructureDefinition/devicemetricobservation");
|
||||
|
||||
assertThat(errors.toString(),
|
||||
containsString("Element '/f:Observation.subject': minimum required = 1, but only found 0"));
|
||||
assertThat(errors.toString(), containsString("Element encounter @ /f:Observation: max allowed = 0, but found 1"));
|
||||
assertThat(errors.toString(),
|
||||
containsString("Element '/f:Observation.device': minimum required = 1, but only found 0"));
|
||||
assertThat(errors.toString(), containsString(""));
|
||||
}
|
||||
input.addIdentifier().setSystem("http://acme").setValue("12345");
|
||||
input.getEncounter().setReference("http://foo.com/Encounter/9");
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
|
||||
|
||||
@Test
|
||||
public void testValidateResourceWithDefaultValueset() {
|
||||
Observation input = new Observation();
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
|
||||
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().setText("No code here!");
|
||||
assertThat(errors.toString(), containsString("Element '/f:Observation.subject': minimum required = 1, but only found 0"));
|
||||
assertThat(errors.toString(), containsString("Element encounter @ /f:Observation: max allowed = 0, but found 1"));
|
||||
assertThat(errors.toString(), containsString("Element '/f:Observation.device': minimum required = 1, but only found 0"));
|
||||
assertThat(errors.toString(), containsString(""));
|
||||
}
|
||||
|
||||
ourLog.info(ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(input));
|
||||
@Test
|
||||
public void testValidateResourceWithDefaultValueset() {
|
||||
Observation input = new Observation();
|
||||
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
assertEquals(output.getMessages().size(), 0);
|
||||
}
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().setText("No code here!");
|
||||
|
||||
@Test
|
||||
public void testValidateResourceWithDefaultValuesetBadCode() {
|
||||
String input = "<Observation xmlns=\"http://hl7.org/fhir\">\n" + " <status value=\"notvalidcode\"/>\n"
|
||||
+ " <code>\n" + " <text value=\"No code here!\"/>\n" + " </code>\n" + "</Observation>";
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
assertEquals(
|
||||
"The value provided is not in the value set http://hl7.org/fhir/ValueSet/observation-status (http://hl7.org/fhir/ValueSet/observation-status, and a code is required from this value set",
|
||||
output.getMessages().get(0).getMessage());
|
||||
}
|
||||
ourLog.info(ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(input));
|
||||
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
assertEquals(output.getMessages().size(), 0);
|
||||
}
|
||||
|
||||
|
||||
|
||||
@Test
|
||||
public void testValidateResourceWithValuesetExpansionBad() {
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.addIdentifier().setSystem("http://example.com/").setValue("12345").getType().addCoding().setSystem("http://example.com/foo/bar").setCode("bar");
|
||||
@Test
|
||||
public void testValidateResourceWithDefaultValuesetBadCode() {
|
||||
String input = "<Observation xmlns=\"http://hl7.org/fhir\">\n" + " <status value=\"notvalidcode\"/>\n" + " <code>\n" + " <text value=\"No code here!\"/>\n" + " </code>\n" + "</Observation>";
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
assertEquals("The value provided is not in the value set http://hl7.org/fhir/ValueSet/observation-status (http://hl7.org/fhir/ValueSet/observation-status, and a code is required from this value set", output.getMessages().get(0).getMessage());
|
||||
}
|
||||
|
||||
ValidationResult output = myVal.validateWithResult(patient);
|
||||
List<SingleValidationMessage> all = logResultsAndReturnAll(output);
|
||||
assertEquals(1, all.size());
|
||||
assertEquals("/f:Patient/f:identifier/f:type", all.get(0).getLocationString());
|
||||
assertEquals("None of the codes provided are in the value set http://hl7.org/fhir/ValueSet/identifier-type (http://hl7.org/fhir/ValueSet/identifier-type, and a code should come from this value set unless it has no suitable code", all.get(0).getMessage());
|
||||
assertEquals(ResultSeverityEnum.WARNING, all.get(0).getSeverity());
|
||||
@Test
|
||||
public void testValidateResourceWithValuesetExpansionBad() {
|
||||
|
||||
}
|
||||
Patient patient = new Patient();
|
||||
patient.addIdentifier().setSystem("http://example.com/").setValue("12345").getType().addCoding().setSystem("http://example.com/foo/bar").setCode("bar");
|
||||
|
||||
ValidationResult output = myVal.validateWithResult(patient);
|
||||
List<SingleValidationMessage> all = logResultsAndReturnAll(output);
|
||||
assertEquals(1, all.size());
|
||||
assertEquals("/f:Patient/f:identifier/f:type", all.get(0).getLocationString());
|
||||
assertEquals("None of the codes provided are in the value set http://hl7.org/fhir/ValueSet/identifier-type (http://hl7.org/fhir/ValueSet/identifier-type, and a code should come from this value set unless it has no suitable code", all.get(0).getMessage());
|
||||
assertEquals(ResultSeverityEnum.WARNING, all.get(0).getSeverity());
|
||||
|
||||
@Test
|
||||
public void testValidateResourceWithValuesetExpansionGood() {
|
||||
Patient patient = new Patient();
|
||||
patient.addIdentifier().setSystem("http://system").setValue("12345").getType().addCoding().setSystem("http://hl7.org/fhir/v2/0203").setCode("MR");
|
||||
}
|
||||
|
||||
ValidationResult output = myVal.validateWithResult(patient);
|
||||
List<SingleValidationMessage> all = logResultsAndReturnAll(output);
|
||||
assertEquals(0, all.size());
|
||||
}
|
||||
@Test
|
||||
public void testValidateResourceWithValuesetExpansionGood() {
|
||||
Patient patient = new Patient();
|
||||
patient.addIdentifier().setSystem("http://system").setValue("12345").getType().addCoding().setSystem("http://hl7.org/fhir/v2/0203").setCode("MR");
|
||||
|
||||
@Test
|
||||
public void testValidateResourceWithExampleBindingCodeValidationFailing() {
|
||||
Observation input = new Observation();
|
||||
ValidationResult output = myVal.validateWithResult(patient);
|
||||
List<SingleValidationMessage> all = logResultsAndReturnAll(output);
|
||||
assertEquals(0, all.size());
|
||||
}
|
||||
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
@Test
|
||||
public void testValidateResourceWithExampleBindingCodeValidationFailing() {
|
||||
Observation input = new Observation();
|
||||
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
|
||||
assertEquals(errors.toString(), 0, errors.size());
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
|
||||
|
||||
}
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
|
||||
assertEquals(errors.toString(), 0, errors.size());
|
||||
|
||||
@Test
|
||||
public void testValidateResourceWithExampleBindingCodeValidationPassingLoinc() {
|
||||
Observation input = new Observation();
|
||||
}
|
||||
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
addValidConcept("http://loinc.org", "12345");
|
||||
@Test
|
||||
public void testValidateResourceWithExampleBindingCodeValidationPassingLoinc() {
|
||||
Observation input = new Observation();
|
||||
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
addValidConcept("http://loinc.org", "12345");
|
||||
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
|
||||
assertEquals(errors.toString(), 0, errors.size());
|
||||
}
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().addCoding().setSystem("http://loinc.org").setCode("12345");
|
||||
|
||||
@Test
|
||||
public void testValidateResourceWithExampleBindingCodeValidationPassingLoincWithExpansion() {
|
||||
Observation input = new Observation();
|
||||
|
||||
ValueSetExpansionComponent expansionComponent = new ValueSetExpansionComponent();
|
||||
expansionComponent.addContains().setSystem("http://loinc.org").setCode("12345").setDisplay("Some display code");
|
||||
|
||||
mySupportedCodeSystemsForExpansion.put("http://loinc.org", expansionComponent);
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
addValidConcept("http://loinc.org", "12345");
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
|
||||
assertEquals(errors.toString(), 0, errors.size());
|
||||
}
|
||||
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().addCoding().setSystem("http://loinc.org").setCode("1234");
|
||||
@Test
|
||||
public void testValidateResourceWithExampleBindingCodeValidationPassingLoincWithExpansion() {
|
||||
Observation input = new Observation();
|
||||
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
|
||||
assertEquals(errors.toString(), 0, errors.size());
|
||||
|
||||
|
||||
}
|
||||
ValueSetExpansionComponent expansionComponent = new ValueSetExpansionComponent();
|
||||
expansionComponent.addContains().setSystem("http://loinc.org").setCode("12345").setDisplay("Some display code");
|
||||
|
||||
@Test
|
||||
public void testValidateResourceWithExampleBindingCodeValidationPassingNonLoinc() {
|
||||
Observation input = new Observation();
|
||||
mySupportedCodeSystemsForExpansion.put("http://loinc.org", expansionComponent);
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
addValidConcept("http://loinc.org", "12345");
|
||||
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
addValidConcept("http://acme.org", "12345");
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().addCoding().setSystem("http://loinc.org").setCode("1234");
|
||||
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().addCoding().setSystem("http://acme.org").setCode("12345");
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
|
||||
assertEquals(errors.toString(), 0, errors.size());
|
||||
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnAll(output);
|
||||
assertEquals(errors.toString(), 0, errors.size());
|
||||
}
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testValidateResourceWithExampleBindingCodeValidationPassingNonLoinc() {
|
||||
Observation input = new Observation();
|
||||
|
||||
myInstanceVal.setValidationSupport(myMockSupport);
|
||||
addValidConcept("http://acme.org", "12345");
|
||||
|
||||
input.setStatus(ObservationStatus.FINAL);
|
||||
input.getCode().addCoding().setSystem("http://acme.org").setCode("12345");
|
||||
|
||||
ValidationResult output = myVal.validateWithResult(input);
|
||||
List<SingleValidationMessage> errors = logResultsAndReturnAll(output);
|
||||
assertEquals(errors.toString(), 0, errors.size());
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
Loading…
Reference in New Issue