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Replaced references to SystemIdentifier with SystemUrlAndVersion.

This commit is contained in:
ianmarshall 2020-09-30 22:04:08 -04:00
parent 90f1981817
commit 7899837fe0
1 changed files with 32 additions and 32 deletions
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64
hapi-fhir-validation/src/main/java/org/hl7/fhir/common/hapi/validation/support/InMemoryTerminologyServerValidationSupport.java
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@ -124,12 +124,12 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
@Override
public CodeValidationResult
validateCodeInValueSet(ValidationSupportContext theValidationSupportContext, ConceptValidationOptions theOptions, String theCodeSystemIdentifier, String theCode, String theDisplay, @Nonnull IBaseResource theValueSet) {
org.hl7.fhir.r5.model.ValueSet expansion = expandValueSetToCanonical(theValidationSupportContext, theValueSet, theCodeSystemIdentifier, theCode);
validateCodeInValueSet(ValidationSupportContext theValidationSupportContext, ConceptValidationOptions theOptions, String theCodeSystemUrlAndVersion, String theCode, String theDisplay, @Nonnull IBaseResource theValueSet) {
org.hl7.fhir.r5.model.ValueSet expansion = expandValueSetToCanonical(theValidationSupportContext, theValueSet, theCodeSystemUrlAndVersion, theCode);
if (expansion == null) {
return null;
}
return validateCodeInExpandedValueSet(theValidationSupportContext, theOptions, theCodeSystemIdentifier, theCode, theDisplay, expansion);
return validateCodeInExpandedValueSet(theValidationSupportContext, theOptions, theCodeSystemUrlAndVersion, theCode, theDisplay, expansion);
}
@ -208,13 +208,13 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
}
private CodeValidationResult validateCodeInExpandedValueSet(ValidationSupportContext theValidationSupportContext, ConceptValidationOptions theOptions, String theCodeSystemIdentifierToValidate, String theCodeToValidate, String theDisplayToValidate, IBaseResource theExpansion) {
private CodeValidationResult validateCodeInExpandedValueSet(ValidationSupportContext theValidationSupportContext, ConceptValidationOptions theOptions, String theCodeSystemUrlAndVersionToValidate, String theCodeToValidate, String theDisplayToValidate, IBaseResource theExpansion) {
assert theExpansion != null;
boolean caseSensitive = true;
IBaseResource codeSystemToValidateResource = null;
if (!theOptions.isInferSystem() && isNotBlank(theCodeSystemIdentifierToValidate)) {
codeSystemToValidateResource = theValidationSupportContext.getRootValidationSupport().fetchCodeSystem(theCodeSystemIdentifierToValidate);
if (!theOptions.isInferSystem() && isNotBlank(theCodeSystemUrlAndVersionToValidate)) {
codeSystemToValidateResource = theValidationSupportContext.getRootValidationSupport().fetchCodeSystem(theCodeSystemUrlAndVersionToValidate);
}
List<FhirVersionIndependentConcept> codes = new ArrayList<>();
@ -291,13 +291,13 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
String codeSystemUrlToValidate=null;
String codeSystemVersionToValidate=null;
if (theCodeSystemIdentifierToValidate != null) {
int versionIndex = theCodeSystemIdentifierToValidate.indexOf("|");
if (theCodeSystemUrlAndVersionToValidate != null) {
int versionIndex = theCodeSystemUrlAndVersionToValidate.indexOf("|");
if (versionIndex > -1) {
codeSystemUrlToValidate = theCodeSystemIdentifierToValidate.substring(0, versionIndex);
codeSystemVersionToValidate = theCodeSystemIdentifierToValidate.substring(versionIndex+1);
codeSystemUrlToValidate = theCodeSystemUrlAndVersionToValidate.substring(0, versionIndex);
codeSystemVersionToValidate = theCodeSystemUrlAndVersionToValidate.substring(versionIndex+1);
} else {
codeSystemUrlToValidate = theCodeSystemIdentifierToValidate;
codeSystemUrlToValidate = theCodeSystemUrlAndVersionToValidate;
}
}
for (FhirVersionIndependentConcept nextExpansionCode : codes) {
@ -332,10 +332,10 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
String message;
if ("fragment".equals(codeSystemResourceContentMode)) {
severity = ValidationMessage.IssueSeverity.WARNING;
message = "Unknown code in fragment CodeSystem '" + (isNotBlank(theCodeSystemIdentifierToValidate) ? theCodeSystemIdentifierToValidate + "#" : "") + theCodeToValidate + "'";
message = "Unknown code in fragment CodeSystem '" + (isNotBlank(theCodeSystemUrlAndVersionToValidate) ? theCodeSystemUrlAndVersionToValidate + "#" : "") + theCodeToValidate + "'";
} else {
severity = ValidationMessage.IssueSeverity.ERROR;
message = "Unknown code '" + (isNotBlank(theCodeSystemIdentifierToValidate) ? theCodeSystemIdentifierToValidate + "#" : "") + theCodeToValidate + "'";
message = "Unknown code '" + (isNotBlank(theCodeSystemUrlAndVersionToValidate) ? theCodeSystemUrlAndVersionToValidate + "#" : "") + theCodeToValidate + "'";
}
return new CodeValidationResult()
@ -349,7 +349,7 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
}
@Nullable
private org.hl7.fhir.r5.model.ValueSet expandValueSetDstu2Hl7Org(ValidationSupportContext theValidationSupportContext, ValueSet theInput, @Nullable String theWantSystemIdentifier, @Nullable String theWantCode) {
private org.hl7.fhir.r5.model.ValueSet expandValueSetDstu2Hl7Org(ValidationSupportContext theValidationSupportContext, ValueSet theInput, @Nullable String theWantSystemUrlAndVersion, @Nullable String theWantCode) {
Function<String, CodeSystem> codeSystemLoader = t -> {
org.hl7.fhir.dstu2.model.ValueSet codeSystem = (org.hl7.fhir.dstu2.model.ValueSet) theValidationSupportContext.getRootValidationSupport().fetchCodeSystem(t);
CodeSystem retVal = new CodeSystem();
@ -362,12 +362,12 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
};
org.hl7.fhir.r5.model.ValueSet input = ValueSet10_50.convertValueSet(theInput);
org.hl7.fhir.r5.model.ValueSet output = expandValueSetR5(theValidationSupportContext, input, codeSystemLoader, valueSetLoader, theWantSystemIdentifier, theWantCode);
org.hl7.fhir.r5.model.ValueSet output = expandValueSetR5(theValidationSupportContext, input, codeSystemLoader, valueSetLoader, theWantSystemUrlAndVersion, theWantCode);
return (output);
}
@Nullable
private org.hl7.fhir.r5.model.ValueSet expandValueSetDstu2(ValidationSupportContext theValidationSupportContext, ca.uhn.fhir.model.dstu2.resource.ValueSet theInput, @Nullable String theWantSystemIdentifier, @Nullable String theWantCode) {
private org.hl7.fhir.r5.model.ValueSet expandValueSetDstu2(ValidationSupportContext theValidationSupportContext, ca.uhn.fhir.model.dstu2.resource.ValueSet theInput, @Nullable String theWantSystemUrlAndVersion, @Nullable String theWantCode) {
IParser parserRi = FhirContext.forCached(FhirVersionEnum.DSTU2_HL7ORG).newJsonParser();
IParser parserHapi = FhirContext.forCached(FhirVersionEnum.DSTU2).newJsonParser();
@ -390,7 +390,7 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
org.hl7.fhir.dstu2.model.ValueSet valueSetRi = parserRi.parseResource(org.hl7.fhir.dstu2.model.ValueSet.class, parserHapi.encodeResourceToString(theInput));
org.hl7.fhir.r5.model.ValueSet input = ValueSet10_50.convertValueSet(valueSetRi);
org.hl7.fhir.r5.model.ValueSet output = expandValueSetR5(theValidationSupportContext, input, codeSystemLoader, valueSetLoader, theWantSystemIdentifier, theWantCode);
org.hl7.fhir.r5.model.ValueSet output = expandValueSetR5(theValidationSupportContext, input, codeSystemLoader, valueSetLoader, theWantSystemUrlAndVersion, theWantCode);
return (output);
}
@ -439,7 +439,7 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
}
@Nullable
private org.hl7.fhir.r5.model.ValueSet expandValueSetDstu3(ValidationSupportContext theValidationSupportContext, org.hl7.fhir.dstu3.model.ValueSet theInput, @Nullable String theWantSystemIdentifier, @Nullable String theWantCode) {
private org.hl7.fhir.r5.model.ValueSet expandValueSetDstu3(ValidationSupportContext theValidationSupportContext, org.hl7.fhir.dstu3.model.ValueSet theInput, @Nullable String theWantSystemUrlAndVersion, @Nullable String theWantCode) {
Function<String, org.hl7.fhir.r5.model.CodeSystem> codeSystemLoader = t -> {
org.hl7.fhir.dstu3.model.CodeSystem codeSystem = (org.hl7.fhir.dstu3.model.CodeSystem) theValidationSupportContext.getRootValidationSupport().fetchCodeSystem(t);
return CodeSystem30_50.convertCodeSystem(codeSystem);
@ -450,12 +450,12 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
};
org.hl7.fhir.r5.model.ValueSet input = ValueSet30_50.convertValueSet(theInput);
org.hl7.fhir.r5.model.ValueSet output = expandValueSetR5(theValidationSupportContext, input, codeSystemLoader, valueSetLoader, theWantSystemIdentifier, theWantCode);
org.hl7.fhir.r5.model.ValueSet output = expandValueSetR5(theValidationSupportContext, input, codeSystemLoader, valueSetLoader, theWantSystemUrlAndVersion, theWantCode);
return (output);
}
@Nullable
private org.hl7.fhir.r5.model.ValueSet expandValueSetR4(ValidationSupportContext theValidationSupportContext, org.hl7.fhir.r4.model.ValueSet theInput, @Nullable String theWantSystemIdentifier, @Nullable String theWantCode) {
private org.hl7.fhir.r5.model.ValueSet expandValueSetR4(ValidationSupportContext theValidationSupportContext, org.hl7.fhir.r4.model.ValueSet theInput, @Nullable String theWantSystemUrlAndVersion, @Nullable String theWantCode) {
Function<String, org.hl7.fhir.r5.model.CodeSystem> codeSystemLoader = t -> {
org.hl7.fhir.r4.model.CodeSystem codeSystem = (org.hl7.fhir.r4.model.CodeSystem) theValidationSupportContext.getRootValidationSupport().fetchCodeSystem(t);
return CodeSystem40_50.convertCodeSystem(codeSystem);
@ -466,7 +466,7 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
};
org.hl7.fhir.r5.model.ValueSet input = ValueSet40_50.convertValueSet(theInput);
org.hl7.fhir.r5.model.ValueSet output = expandValueSetR5(theValidationSupportContext, input, codeSystemLoader, valueSetLoader, theWantSystemIdentifier, theWantCode);
org.hl7.fhir.r5.model.ValueSet output = expandValueSetR5(theValidationSupportContext, input, codeSystemLoader, valueSetLoader, theWantSystemUrlAndVersion, theWantCode);
return (output);
}
@ -479,12 +479,12 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
}
@Nullable
private org.hl7.fhir.r5.model.ValueSet expandValueSetR5(ValidationSupportContext theValidationSupportContext, org.hl7.fhir.r5.model.ValueSet theInput, Function<String, CodeSystem> theCodeSystemLoader, Function<String, org.hl7.fhir.r5.model.ValueSet> theValueSetLoader, @Nullable String theWantSystemIdentifier, @Nullable String theWantCode) {
private org.hl7.fhir.r5.model.ValueSet expandValueSetR5(ValidationSupportContext theValidationSupportContext, org.hl7.fhir.r5.model.ValueSet theInput, Function<String, CodeSystem> theCodeSystemLoader, Function<String, org.hl7.fhir.r5.model.ValueSet> theValueSetLoader, @Nullable String theWantSystemUrlAndVersion, @Nullable String theWantCode) {
Set<FhirVersionIndependentConcept> concepts = new HashSet<>();
try {
expandValueSetR5IncludeOrExclude(theValidationSupportContext, concepts, theCodeSystemLoader, theValueSetLoader, theInput.getCompose().getInclude(), true, theWantSystemIdentifier, theWantCode);
expandValueSetR5IncludeOrExclude(theValidationSupportContext, concepts, theCodeSystemLoader, theValueSetLoader, theInput.getCompose().getExclude(), false, theWantSystemIdentifier, theWantCode);
expandValueSetR5IncludeOrExclude(theValidationSupportContext, concepts, theCodeSystemLoader, theValueSetLoader, theInput.getCompose().getInclude(), true, theWantSystemUrlAndVersion, theWantCode);
expandValueSetR5IncludeOrExclude(theValidationSupportContext, concepts, theCodeSystemLoader, theValueSetLoader, theInput.getCompose().getExclude(), false, theWantSystemUrlAndVersion, theWantCode);
} catch (ExpansionCouldNotBeCompletedInternallyException e) {
return null;
}
@ -501,16 +501,16 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
return retVal;
}
private void expandValueSetR5IncludeOrExclude(ValidationSupportContext theValidationSupportContext, Set<FhirVersionIndependentConcept> theConcepts, Function<String, CodeSystem> theCodeSystemLoader, Function<String, org.hl7.fhir.r5.model.ValueSet> theValueSetLoader, List<org.hl7.fhir.r5.model.ValueSet.ConceptSetComponent> theComposeList, boolean theComposeListIsInclude, @Nullable String theWantSystemIdentifier, @Nullable String theWantCode) throws ExpansionCouldNotBeCompletedInternallyException {
private void expandValueSetR5IncludeOrExclude(ValidationSupportContext theValidationSupportContext, Set<FhirVersionIndependentConcept> theConcepts, Function<String, CodeSystem> theCodeSystemLoader, Function<String, org.hl7.fhir.r5.model.ValueSet> theValueSetLoader, List<org.hl7.fhir.r5.model.ValueSet.ConceptSetComponent> theComposeList, boolean theComposeListIsInclude, @Nullable String theWantSystemUrlAndVersion, @Nullable String theWantCode) throws ExpansionCouldNotBeCompletedInternallyException {
String wantSystemUrl = null;
String wantSystemVersion = null;
if (theWantSystemIdentifier != null) {
int versionIndex = theWantSystemIdentifier.indexOf("|");
if (theWantSystemUrlAndVersion != null) {
int versionIndex = theWantSystemUrlAndVersion.indexOf("|");
if (versionIndex > -1) {
wantSystemUrl = theWantSystemIdentifier.substring(0,versionIndex);
wantSystemVersion = theWantSystemIdentifier.substring(versionIndex+1);
wantSystemUrl = theWantSystemUrlAndVersion.substring(0,versionIndex);
wantSystemVersion = theWantSystemUrlAndVersion.substring(versionIndex+1);
} else {
wantSystemUrl = theWantSystemIdentifier;
wantSystemUrl = theWantSystemUrlAndVersion;
}
}
@ -572,7 +572,7 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
* enumerate a set of good codes for them is a nice compromise there.
*/
for (org.hl7.fhir.r5.model.ValueSet.ConceptSetComponent next : theComposeList) {
if (Objects.equals(next.getSystem(), theWantSystemIdentifier)) {
if (Objects.equals(next.getSystem(), theWantSystemUrlAndVersion)) {
Optional<org.hl7.fhir.r5.model.ValueSet.ConceptReferenceComponent> matchingEnumeratedConcept = next.getConcept().stream().filter(t -> Objects.equals(t.getCode(), theWantCode)).findFirst();
if (matchingEnumeratedConcept.isPresent()) {
CodeSystem.ConceptDefinitionComponent conceptDefinition = new CodeSystem.ConceptDefinitionComponent()
@ -607,7 +607,7 @@ public class InMemoryTerminologyServerValidationSupport implements IValidationSu
for (CanonicalType nextValueSetInclude : nextInclude.getValueSet()) {
org.hl7.fhir.r5.model.ValueSet vs = theValueSetLoader.apply(nextValueSetInclude.getValueAsString());
if (vs != null) {
org.hl7.fhir.r5.model.ValueSet subExpansion = expandValueSetR5(theValidationSupportContext, vs, theCodeSystemLoader, theValueSetLoader, theWantSystemIdentifier, theWantCode);
org.hl7.fhir.r5.model.ValueSet subExpansion = expandValueSetR5(theValidationSupportContext, vs, theCodeSystemLoader, theValueSetLoader, theWantSystemUrlAndVersion, theWantCode);
if (subExpansion == null) {
throw new ExpansionCouldNotBeCompletedInternallyException();
}