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Merge branch 'master' into ja_20241106_mdm_virtualization

This commit is contained in:
James Agnew 2024-11-13 14:10:46 -05:00
parent 76865940d1 cdb0a9c480
commit 7c98bfdd9f
80 changed files with 115 additions and 81 deletions
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2
hapi-deployable-pom/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-android/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-base/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

4
hapi-fhir-bom/pom.xml
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@ -4,7 +4,7 @@
<modelVersion>4.0.0</modelVersion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-bom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<packaging>pom</packaging>
<name>HAPI FHIR BOM</name>
@ -12,7 +12,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-checkstyle/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-cli/hapi-fhir-cli-api/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
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<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-cli/hapi-fhir-cli-app/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-cli</artifactId>
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<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-cli/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
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<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-client-okhttp/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-client/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-converter/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-dist/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
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<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-docs/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
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<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

8
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/contributing/hacking_guide.md
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@ -51,6 +51,14 @@ HAPI is built primary using [Apache Maven](http://maven.apache.org/). Even if yo
[INFO] Finished at: 2016-02-27T15:05:35+00:00
```
# Rebuilding the Database Schema
Database schema is built as part of your maven build, but in case you need to rebuild it later, you can use the command:
```bash
mvn hapi-tinder:generate-ddl
```
# Troubleshooting
If the build fails to execute successfully, try the following:

2
hapi-fhir-jacoco/pom.xml
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@ -11,7 +11,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jaxrsserver-base/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpa/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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5
hapi-fhir-jpaserver-base/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
@ -414,7 +414,6 @@
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>${project.version}</version>
<executions>
<execution>
<id>build_dstu2</id>
@ -525,7 +524,6 @@
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>${project.version}</version>
<executions>
<execution>
<goals>
@ -534,6 +532,7 @@
</execution>
</executions>
<configuration>
<skip>false</skip>
<packageNames>
<packageName>ca.uhn.fhir.jpa.entity</packageName>
<packageName>ca.uhn.fhir.jpa.model.entity</packageName>

2
hapi-fhir-jpaserver-elastic-test-utilities/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-hfql/pom.xml
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@ -3,7 +3,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-ips/pom.xml
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@ -3,7 +3,7 @@
<parent>
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</parent>

2
hapi-fhir-jpaserver-mdm/pom.xml
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@ -6,7 +6,7 @@
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-model/pom.xml
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@ -5,7 +5,7 @@
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2
hapi-fhir-jpaserver-searchparam/pom.xml
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@ -5,7 +5,7 @@
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2
hapi-fhir-jpaserver-subscription/pom.xml
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@ -5,7 +5,7 @@
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2
hapi-fhir-jpaserver-test-dstu2/pom.xml
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@ -6,7 +6,7 @@
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2
hapi-fhir-jpaserver-test-dstu3/pom.xml
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@ -6,7 +6,7 @@
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2
hapi-fhir-jpaserver-test-r4/pom.xml
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@ -6,7 +6,7 @@
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2
hapi-fhir-jpaserver-test-r4b/pom.xml
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@ -6,7 +6,7 @@
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2
hapi-fhir-jpaserver-test-r5/pom.xml
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@ -6,7 +6,7 @@
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2
hapi-fhir-jpaserver-test-utilities/pom.xml
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@ -6,7 +6,7 @@
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2
hapi-fhir-jpaserver-uhnfhirtest/pom.xml
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@ -5,7 +5,7 @@
<parent>
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2
hapi-fhir-server-cds-hooks/pom.xml
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@ -7,7 +7,7 @@
<parent>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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2
hapi-fhir-server-mdm/pom.xml
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@ -7,7 +7,7 @@
<parent>
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2
hapi-fhir-server-openapi/pom.xml
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@ -5,7 +5,7 @@
<parent>
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2
hapi-fhir-server/pom.xml
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@ -5,7 +5,7 @@
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2
hapi-fhir-serviceloaders/hapi-fhir-caching-api/pom.xml
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@ -7,7 +7,7 @@
<parent>
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4
hapi-fhir-serviceloaders/hapi-fhir-caching-caffeine/pom.xml
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@ -7,7 +7,7 @@
<parent>
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<relativePath>../pom.xml</relativePath>
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@ -21,7 +21,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-caching-api</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
</dependency>
<dependency>

2
hapi-fhir-serviceloaders/hapi-fhir-caching-guava/pom.xml
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@ -7,7 +7,7 @@
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2
hapi-fhir-serviceloaders/hapi-fhir-caching-testing/pom.xml
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@ -7,7 +7,7 @@
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2
hapi-fhir-serviceloaders/pom.xml
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2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-autoconfigure/pom.xml
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@ -5,7 +5,7 @@
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2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-client-apache/pom.xml
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<artifactId>hapi-fhir-spring-boot-sample-client-apache</artifactId>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-client-okhttp/pom.xml
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2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-server-jersey/pom.xml
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2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/pom.xml
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2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-starter/pom.xml
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2
hapi-fhir-spring-boot/pom.xml
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@ -5,7 +5,7 @@
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2
hapi-fhir-sql-migrate/pom.xml
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@ -5,7 +5,7 @@
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2
hapi-fhir-storage-batch2-jobs/pom.xml
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2
hapi-fhir-storage-batch2-test-utilities/pom.xml
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@ -7,7 +7,7 @@
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2
hapi-fhir-storage-batch2/pom.xml
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2
hapi-fhir-storage-cr/pom.xml
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@ -7,7 +7,7 @@
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<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage-mdm/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage-test-utilities/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-dstu2.1/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-dstu2/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-dstu3/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-hl7org-dstu2/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-r4/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-r4b/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-r5/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-test-utilities/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-testpage-overlay/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-dstu2.1/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-dstu2/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-dstu3/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-r4/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-r4b/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-r5/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

3
hapi-tinder-plugin/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
@ -265,6 +265,7 @@
<configuration>
<!-- see http://jira.codehaus.org/browse/MNG-5346 -->
<skipErrorNoDescriptorsFound>true</skipErrorNoDescriptorsFound>
<goalPrefix>hapi-tinder</goalPrefix>
</configuration>
<executions>

1
hapi-tinder-plugin/src/main/java/ca/uhn/fhir/tinder/ddl/DdlGeneratorHibernate61.java
View File

@ -250,6 +250,7 @@ public class DdlGeneratorHibernate61 {
Resource resource = loader.getResource(prependFile);
try (Writer w = new FileWriter(outputFile, true)) {
w.append(resource.getContentAsString(StandardCharsets.UTF_8));
ourLog.info("Added contents of file: {}", prependFile);
} catch (IOException e) {
throw new MojoFailureException("Failed to write to file " + outputFile + ": " + e.getMessage(), e);
}

7
hapi-tinder-plugin/src/main/java/ca/uhn/fhir/tinder/ddl/GenerateDdlMojo.java
View File

@ -36,11 +36,18 @@ public class GenerateDdlMojo extends AbstractMojo {
@Parameter
String outputDirectory;
@Parameter(defaultValue = "false")
boolean skip;
@Parameter(defaultValue = "${project}", readonly = true)
private transient MavenProject project;
@Override
public void execute() throws MojoExecutionException, MojoFailureException {
if (skip) {
return;
}
ourLog.info("Going to generate DDL files in directory: {}", outputDirectory);
File outputDirectoryFile = new File(outputDirectory);

2
hapi-tinder-test/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

20
pom.xml
View File

@ -8,7 +8,7 @@
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<packaging>pom</packaging>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<name>HAPI-FHIR</name>
<description>An open-source implementation of the FHIR specification in Java.</description>
@ -2618,6 +2618,24 @@
</excludes>
</configuration>
</plugin>
<!-- Generate the DDL schema files -->
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>7.7.3-SNAPSHOT</version>
<executions>
<execution>
<goals>
<goal>generate-ddl</goal>
</goals>
</execution>
</executions>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself. -->
<plugin>
<groupId>org.eclipse.m2e</groupId>

2
tests/hapi-fhir-base-test-jaxrsserver-kotlin/pom.xml
View File

@ -7,7 +7,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../../pom.xml</relativePath>
</parent>

2
tests/hapi-fhir-base-test-mindeps-client/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../../pom.xml</relativePath>
</parent>

2
tests/hapi-fhir-base-test-mindeps-server/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.7.2-SNAPSHOT</version>
<version>7.7.3-SNAPSHOT</version>
<relativePath>../../pom.xml</relativePath>
</parent>