Merge branch 'master' into loinc_loader_update
This commit is contained in:
jamesagnew
commit
817569228b
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@ -2343,6 +2343,78 @@ public class FhirSystemDaoR4Test extends BaseJpaR4SystemTest {
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}
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@Test
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public void testTransactionWithConditionalUpdateDoesntUpdateIfNoChange() {
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Observation obs = new Observation();
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obs.addIdentifier()
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.setSystem("http://acme.org")
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.setValue("ID1");
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obs
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.getCode()
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.addCoding()
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.setSystem("http://loinc.org")
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.setCode("29463-7");
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obs.setEffective(new DateTimeType("2011-09-03T11:13:00-04:00"));
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obs.setValue(new Quantity()
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.setValue(new BigDecimal("123.4"))
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.setCode("kg")
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.setSystem("http://unitsofmeasure.org")
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.setUnit("kg"));
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Bundle input = new Bundle();
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input.setType(BundleType.TRANSACTION);
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input
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.addEntry()
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.setFullUrl("urn:uuid:0001")
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.setResource(obs)
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.getRequest()
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.setMethod(HTTPVerb.PUT)
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.setUrl("Observation?identifier=http%3A%2F%2Facme.org|ID1");
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Bundle output = mySystemDao.transaction(mySrd, input);
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assertEquals(1, output.getEntry().size());
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IdType id = new IdType(output.getEntry().get(0).getResponse().getLocation());
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assertEquals("Observation", id.getResourceType());
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assertEquals("1", id.getVersionIdPart());
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/*
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* Try again with same contents
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*/
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Observation obs2 = new Observation();
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obs2.addIdentifier()
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.setSystem("http://acme.org")
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.setValue("ID1");
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obs2
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.getCode()
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.addCoding()
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.setSystem("http://loinc.org")
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.setCode("29463-7");
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obs2.setEffective(new DateTimeType("2011-09-03T11:13:00-04:00"));
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obs2.setValue(new Quantity()
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.setValue(new BigDecimal("123.4"))
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.setCode("kg")
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.setSystem("http://unitsofmeasure.org")
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.setUnit("kg"));
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Bundle input2 = new Bundle();
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input2.setType(BundleType.TRANSACTION);
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input2
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.addEntry()
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.setFullUrl("urn:uuid:0001")
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.setResource(obs2)
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.getRequest()
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.setMethod(HTTPVerb.PUT)
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.setUrl("Observation?identifier=http%3A%2F%2Facme.org|ID1");
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Bundle output2 = mySystemDao.transaction(mySrd, input2);
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assertEquals(1, output2.getEntry().size());
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IdType id2 = new IdType(output2.getEntry().get(0).getResponse().getLocation());
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assertEquals("Observation", id2.getResourceType());
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assertEquals("1", id2.getVersionIdPart());
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assertEquals(id.getValue(), id2.getValue());
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}
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@Test
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public void testTransactionWithIfMatch() {
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Patient p = new Patient();
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@ -6,7 +6,7 @@
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<title>HAPI FHIR Changelog</title>
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</properties>
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<body>
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<release version="3.3.0" date="TBD">
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<release version="3.3.0" date="2018-03-29">
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<action type="add">
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This release corrects an inefficiency in the JPA Server, but requires a schema
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change in order to update. Prior to this version of HAPI FHIR, a CLOB column
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@ -14,12 +14,29 @@
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tables: HFJ_RESOURCE and HFJ_RES_VER. Because the same content was stored in two
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places, the database consumed more space than is needed to.
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<![CDATA[<br/><br/>]]>
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In order to reduce this duplication, two columns have been removed from the
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HFJ_RESOURCE table. This means that on any database that is being upgraded
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to HAPI FHIR 3.3.0+, you will need to remove the columns
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<![CDATA[<code>RES_TEXT</code> and <code>RES_ENCODING</code>]]> (or
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set them to nullable if you want an easy means of rolling back). Naturally
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you should back your database up prior to making this change.
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In order to reduce this duplication, the
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<![CDATA[<code>RES_TEXT</code> and <code>RES_ENCODING</code>]]>
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columns have been
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<![CDATA[<b>dropped</b>]]>
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from the
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<![CDATA[<code>HFJ_RESOURCE]]>
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table, and the
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<![CDATA[<code>RES_TEXT</code> and <code>RES_ENCODING</code>]]>
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columns have been
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<![CDATA[<b>made NULLABLE</b>]]>
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on the
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<![CDATA[<code>HFJ_RES_VER]]>
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table.
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<![CDATA[<br/><br/>]]>
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The following migration script may be used to apply these changes to
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your database. Naturally you should back your database up prior to
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making this change.
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<![CDATA[
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<pre>ALTER TABLE hfj_resource DROP COLUMN res_text;
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ALTER TABLE hfj_resource DROP COLUMN res_encoding;
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ALTER TABLE hfj_res_ver ALTER COLUMN res_encoding DROP NOT NULL;
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ALTER TABLE hfj_res_ver ALTER COLUMN res_text DROP NOT NULL;</pre>
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]]>
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</action>
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<action type="fix">
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The validation module has been refactored to use the R4 (currently maintained)
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@ -41,7 +58,7 @@
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</ul>
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]]>
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</action>
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<action tyoe="add" issue="871">
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<action type="add" issue="871">
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A number of HAPI FHIR modules have been converted so that they now work
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as OSGi modules. Unlike the previous OSGi module, which was a mega-JAR
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with all of HAPI FHIR in it, this is simply the appropriate
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@ -69,6 +69,62 @@
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</section>
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<section name="Announcements">
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<p>
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<b>Mar 29, 2018 - HAPI FHIR 3.3.0 Released</b> -
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The next release of HAPI has now been uploaded to the Maven repos and
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GitHub's releases section.
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</p>
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<p>
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This release brings logs of fixes and some significant enhancements.See the
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<a href="http://hapifhir.io/changes-report.html">changelog</a> for a full list
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of changes. Notable changes include:
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</p>
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<ul>
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<li>
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A schema change to the JPA server has been made which will result in
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significantly less storage space being used and better write performance
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for repositories which contain a large number of resource, or larger
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resource bodies. Prior to this change, resource bodies were stored in
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duplicate in two places in the database and this has now been corrected.
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<br/><br/>
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Note that a database migration script must be run for this upgrade, see
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the changelog for details.
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</li>
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<li>
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The validator has been refactored to use a single codebase across DSTU3/R4
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validation which means that any fixes and enhancements will now affect both.
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This makes the DSTU3 validator much more complete in terms of support for
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advanced validation as well.
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</li>
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<li>
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Several significant features were contributed by the community, including
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native OSGi support (several HAPI FHIR JARs now have OSGi metadata included)
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as well as initial experimental support for ElasticSearch instead of
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Raw Lucene for the JPA server.
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</li>
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<li>
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Several enhancements and bugfixes have been made to the interceptor
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framework.
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</li>
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<li>
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Many other bugfixes and enhancements have been made as well
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</li>
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</ul>
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<p>
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Note also that we are hiring! If you have an interest in helping us develop
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HAPI FHIR or work on implementation projects, please
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<a href="mailto:jamesagnew@gmail.com">get in touch</a>!
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</p>
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<p>
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Thanks to everyone who contributed to this release! The HAPI FHIR community
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continues to get bigger and bigger. Together we are transforming healthcare.
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</p>
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<p>
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- <a href="https://github.com/jamesagnew/">James Agnew</a>
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</p>
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<br/><br/>
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<p>
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<b>Jan 13, 2018 - HAPI FHIR 3.2.0 Released</b> -
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The next release of HAPI has now been uploaded to the Maven repos and
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@ -111,8 +167,9 @@
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<p>
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- <a href="https://github.com/jamesagnew/">James Agnew</a>
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</p>
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<br/><br/>
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<!--
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<br/><br/>
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<p>
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<b>November 23, 2017 - HAPI FHIR 3.1.0 Released</b> -
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The next release of HAPI has now been uploaded to the Maven repos and
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@ -271,7 +328,6 @@
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</p>
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<br/><br/>
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<!--
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<p>
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<b>June 8, 2017 - HAPI FHIR 2.5 Released</b> -
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The next release of HAPI has now been uploaded to the Maven repos and
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