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hapi-fhir
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Squashed commit of the following: 

commit 408f2d82b762900de53ebe66dde8eec082e7bae7
Merge: 8da38d1a9e be19acb7c3
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Tue Oct 12 12:00:56 2021 -0400

    Merge branch 'master' into ja_20211011_fix_intermittent

commit 8da38d1a9e
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Oct 11 21:31:42 2021 -0400

    Test fixes

commit c73fd288f0
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Oct 11 20:53:04 2021 -0400

    Fix intermittent failure
This commit is contained in:
jamesagnew 2021-10-12 12:01:34 -04:00
parent be19acb7c3
commit 818c54f0b9
3 changed files with 39 additions and 37 deletions
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4
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/bulk/imprt/svc/BulkDataImportR4Test.java
View File

@ -89,8 +89,8 @@ public class BulkDataImportR4Test extends BaseJpaR4Test implements ITestDataBuil
public void testFlow_ErrorDuringWrite() {
myInterceptorRegistry.registerInterceptor(new MyFailAfterThreeCreatesInterceptor());
int transactionsPerFile = 10;
int fileCount = 10;
int transactionsPerFile = 5;
int fileCount = 5;
List<BulkImportJobFileJson> files = createInputFiles(transactionsPerFile, fileCount);
BulkImportJobJson job = new BulkImportJobJson();

4
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/config/TestR4Config.java
View File

@ -80,9 +80,9 @@ public class TestR4Config extends BaseJavaConfigR4 {
try {
retVal = new ConnectionWrapper(super.getConnection());
} catch (Exception e) {
ourLog.error("Exceeded maximum wait for connection", e);
ourLog.error("Exceeded maximum wait for connection (" + ourMaxThreads + " max)", e);
logGetConnectionStackTrace();
fail("Exceeded maximum wait for connection: " + e.toString());
fail("Exceeded maximum wait for connection (" + ourMaxThreads + " max): " + e);
retVal = null;
}

68
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/subscription/email/EmailSubscriptionDstu3Test.java
View File

@ -28,6 +28,7 @@ import javax.mail.internet.MimeMessage;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.function.Consumer;
import static ca.uhn.fhir.jpa.subscription.resthook.RestHookTestDstu3Test.logAllInterceptors;
import static org.junit.jupiter.api.Assertions.assertEquals;
@ -83,7 +84,7 @@ public class EmailSubscriptionDstu3Test extends BaseResourceProviderDstu3Test {
myDaoConfig.setEmailFromAddress("123@hapifhir.io");
}
private Subscription createSubscription(String theCriteria, String thePayload) throws InterruptedException {
private Subscription createSubscription(String theCriteria, String thePayload, Consumer<Subscription>... theModifiers) throws InterruptedException {
Subscription subscription = new Subscription();
subscription.setReason("Monitor new neonatal function (note, age will be determined by the monitor)");
subscription.setStatus(Subscription.SubscriptionStatus.REQUESTED);
@ -95,6 +96,12 @@ public class EmailSubscriptionDstu3Test extends BaseResourceProviderDstu3Test {
channel.setEndpoint("mailto:foo@example.com");
subscription.setChannel(channel);
if (theModifiers != null) {
for (Consumer<Subscription> next : theModifiers) {
next.accept(subscription);
}
}
MethodOutcome methodOutcome = ourClient.create().resource(subscription).execute();
subscription.setId(methodOutcome.getId().getIdPart());
mySubscriptionIds.add(methodOutcome.getId());
@ -157,30 +164,28 @@ public class EmailSubscriptionDstu3Test extends BaseResourceProviderDstu3Test {
/**
* Tests an email subscription with payload set to JSON. The email sent must include content in the body of the email that is formatted as JSON.
*/
@SuppressWarnings("unchecked")
@Test
public void testEmailSubscriptionWithCustom() throws Exception {
String payload = "application/fhir+json";
String code = "1000000050";
String criteria1 = "Observation?code=SNOMED-CT|" + code + "&_format=xml";
Subscription sub1 = createSubscription(criteria1, payload);
Subscription subscriptionTemp = ourClient.read(Subscription.class, sub1.getId());
assertNotNull(subscriptionTemp);
Consumer<Subscription> modifier = subscriptionTemp->{
subscriptionTemp.getChannel().addExtension()
.setUrl(HapiExtensions.EXT_SUBSCRIPTION_EMAIL_FROM)
.setValue(new StringType("mailto:myfrom@from.com"));
subscriptionTemp.getChannel().addExtension()
.setUrl(HapiExtensions.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE)
.setValue(new StringType("This is a subject"));
subscriptionTemp.setIdElement(subscriptionTemp.getIdElement().toUnqualifiedVersionless());
};
subscriptionTemp.getChannel().addExtension()
.setUrl(HapiExtensions.EXT_SUBSCRIPTION_EMAIL_FROM)
.setValue(new StringType("mailto:myfrom@from.com"));
subscriptionTemp.getChannel().addExtension()
.setUrl(HapiExtensions.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE)
.setValue(new StringType("This is a subject"));
subscriptionTemp.setIdElement(subscriptionTemp.getIdElement().toUnqualifiedVersionless());
Subscription sub1 = createSubscription(criteria1, payload, modifier);
ourLog.info(myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(subscriptionTemp));
ourClient.update().resource(subscriptionTemp).withId(subscriptionTemp.getIdElement()).execute();
waitForQueueToDrain();
mySubscriptionTestUtil.setEmailSender(subscriptionTemp.getIdElement(), new EmailSenderImpl(withMailConfig()));
mySubscriptionTestUtil.setEmailSender(sub1.getIdElement(), new EmailSenderImpl(withMailConfig()));
sendObservation(code, "SNOMED-CT");
waitForQueueToDrain();
@ -213,28 +218,27 @@ public class EmailSubscriptionDstu3Test extends BaseResourceProviderDstu3Test {
String code = "1000000050";
String criteria1 = "Observation?code=SNOMED-CT|" + code + "&_format=xml";
Subscription sub1 = createSubscription(criteria1, payload);
Subscription subscriptionTemp = ourClient.read(Subscription.class, sub1.getId());
assertNotNull(subscriptionTemp);
subscriptionTemp.getChannel().addExtension()
.setUrl(HapiExtensions.EXT_SUBSCRIPTION_EMAIL_FROM)
.setValue(new StringType("myfrom@from.com"));
subscriptionTemp.getChannel().addExtension()
.setUrl(HapiExtensions.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE)
.setValue(new StringType("This is a subject"));
subscriptionTemp.setIdElement(subscriptionTemp.getIdElement().toUnqualifiedVersionless());
Consumer<Subscription> modifier = subscriptionTemp ->{
subscriptionTemp.getChannel().addExtension()
.setUrl(HapiExtensions.EXT_SUBSCRIPTION_EMAIL_FROM)
.setValue(new StringType("myfrom@from.com"));
subscriptionTemp.getChannel().addExtension()
.setUrl(HapiExtensions.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE)
.setValue(new StringType("This is a subject"));
subscriptionTemp.setIdElement(subscriptionTemp.getIdElement().toUnqualifiedVersionless());
};
IIdType id = ourClient.update().resource(subscriptionTemp).withId(subscriptionTemp.getIdElement()).execute().getId();
ourLog.info("Subscription ID is: {}", id.getValue());
Subscription sub1 = createSubscription(criteria1, payload, modifier);
waitForQueueToDrain();
mySubscriptionTestUtil.setEmailSender(subscriptionTemp.getIdElement(), new EmailSenderImpl(withMailConfig()));
mySubscriptionTestUtil.setEmailSender(sub1.getIdElement(), new EmailSenderImpl(withMailConfig()));
sendObservation(code, "SNOMED-CT");
waitForQueueToDrain();
assertTrue(ourGreenMail.waitForIncomingEmail(1000, 1));
ourLog.info("About to wait for email reception");
assertTrue(ourGreenMail.waitForIncomingEmail(10000, 1));
List<MimeMessage> received = Arrays.asList(ourGreenMail.getReceivedMessages());
assertEquals(1, received.size());
@ -247,11 +251,9 @@ public class EmailSubscriptionDstu3Test extends BaseResourceProviderDstu3Test {
assertEquals("", received.get(0).getContent().toString().trim());
assertEquals(mySubscriptionIds.get(0).toUnqualifiedVersionless().getValue(), received.get(0).getHeader("X-FHIR-Subscription")[0]);
ourLog.info("Subscription: {}", myFhirCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(ourClient.history().onInstance(id).andReturnBundle(Bundle.class).execute()));
Subscription subscription = ourClient.read().resource(Subscription.class).withId(id.toUnqualifiedVersionless()).execute();
Subscription subscription = ourClient.read().resource(Subscription.class).withId(sub1.getIdElement().toUnqualifiedVersionless()).execute();
assertEquals(Subscription.SubscriptionStatus.ACTIVE, subscription.getStatus());
assertEquals("3", subscription.getIdElement().getVersionIdPart());
assertEquals("2", subscription.getIdElement().getVersionIdPart());
}
private void waitForQueueToDrain() throws InterruptedException {