Add schema initialization
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@ -88,7 +88,6 @@ public class PartitionLookupSvcImpl implements IPartitionLookupSvc {
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myPartitionDao.save(partitionEntity);
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}
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});
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}
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@Override
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@ -18,7 +18,7 @@
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<dependencies>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-server-empi</artifactId>
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<artifactId>hapi-fhir-jpaserver-migrate</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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@ -1,24 +0,0 @@
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package ca.uhn.fhir.jpa.batch.config;
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import ca.uhn.fhir.jpa.batch.svc.DummyService;
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import org.springframework.batch.core.configuration.annotation.BatchConfigurer;
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import org.springframework.batch.core.configuration.annotation.EnableBatchProcessing;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.Configuration;
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@Configuration
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@EnableBatchProcessing
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public class BatchConfig {
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@Bean
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public DummyService dummyService() {
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return new DummyService();
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}
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@Bean
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public BatchConfigurer jpaBatchConfigurer() {
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return new JpaBatchConfigurer();
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}
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}
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@ -2,17 +2,22 @@ package ca.uhn.fhir.jpa.batch.config;
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import org.springframework.batch.core.configuration.annotation.DefaultBatchConfigurer;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Qualifier;
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import org.springframework.orm.jpa.JpaTransactionManager;
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import org.springframework.stereotype.Component;
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import org.springframework.transaction.PlatformTransactionManager;
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/*//
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@Component
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public class JpaBatchConfigurer extends DefaultBatchConfigurer {
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@Autowired
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private PlatformTransactionManager myPlatformTransactionManager;
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@Qualifier
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private JpaTransactionManager myPlatformTransactionManager;
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@Override
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public PlatformTransactionManager getTransactionManager() {
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return myPlatformTransactionManager;
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}
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}
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*/
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@ -2,8 +2,9 @@ package ca.uhn.fhir.jpa.batch;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.jpa.api.dao.IFhirResourceDao;
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import ca.uhn.fhir.jpa.batch.config.BatchConfig;
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import ca.uhn.fhir.jpa.batch.config.BaseTestBatchConfig;
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import ca.uhn.fhir.jpa.batch.svc.DummyService;
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import ca.uhn.fhir.jpa.config.TestJpaR4Config;
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import ca.uhn.fhir.jpa.dao.index.IdHelperService;
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import ca.uhn.fhir.jpa.test.BaseJpaR4Test;
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import org.hl7.fhir.r4.model.Patient;
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@ -11,17 +12,26 @@ import org.hl7.fhir.r4.model.Person;
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import org.hl7.fhir.r4.model.Practitioner;
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import org.junit.runner.RunWith;
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import org.slf4j.Logger;
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import org.springframework.batch.core.Job;
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import org.springframework.batch.core.launch.JobLauncher;
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import org.springframework.batch.test.JobLauncherTestUtils;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.test.context.ContextConfiguration;
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import org.springframework.test.context.junit4.SpringRunner;
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import org.springframework.transaction.PlatformTransactionManager;
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import javax.annotation.PostConstruct;
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import static org.slf4j.LoggerFactory.getLogger;
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@RunWith(SpringRunner.class)
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@ContextConfiguration(classes = {BatchConfig.class})
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@ContextConfiguration(classes = {BaseTestBatchConfig.class, TestJpaR4Config.class})
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abstract public class BaseBatchR4Test extends BaseJpaR4Test {
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private static final Logger ourLog = getLogger(BaseBatchR4Test.class);
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@Autowired
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protected PlatformTransactionManager myPlatformTransactionManager;
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@Autowired
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protected FhirContext myFhirContext;
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@Autowired
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@ -34,4 +44,9 @@ abstract public class BaseBatchR4Test extends BaseJpaR4Test {
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protected IdHelperService myIdHelperService;
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@Autowired
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protected DummyService myDummyService;
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@Autowired
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protected JobLauncher myJobLauncher;
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@Autowired
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protected Job myJob;
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}
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@ -1,8 +1,57 @@
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package ca.uhn.fhir.jpa.batch.config;
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import ca.uhn.fhir.jpa.batch.svc.DummyService;
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import ca.uhn.fhir.jpa.config.TestJpaConfig;
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import org.springframework.batch.core.Job;
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import org.springframework.batch.core.Step;
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import org.springframework.batch.core.configuration.annotation.DefaultBatchConfigurer;
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import org.springframework.batch.core.configuration.annotation.EnableBatchProcessing;
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import org.springframework.batch.core.configuration.annotation.JobBuilderFactory;
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import org.springframework.batch.core.configuration.annotation.StepBuilderFactory;
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import org.springframework.batch.repeat.RepeatStatus;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.Configuration;
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import org.springframework.orm.jpa.JpaTransactionManager;
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import org.springframework.transaction.PlatformTransactionManager;
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@Configuration
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public class BaseTestBatchConfig {
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@EnableBatchProcessing
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public class BaseTestBatchConfig extends DefaultBatchConfigurer {
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@Autowired
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private JpaTransactionManager myPlatformTransactionManager;
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@Autowired
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private JobBuilderFactory myJobBuilderFactory;
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@Autowired
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private StepBuilderFactory myStepBuilderFactory;
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@Override
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public PlatformTransactionManager getTransactionManager() {
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return myPlatformTransactionManager;
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}
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@Bean
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public DummyService myDummyService() {
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return new DummyService();
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}
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@Bean
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public Job testJob() {
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return myJobBuilderFactory.get("testJob")
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.start(testStep())
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.build();
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}
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@Bean
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public Step testStep() {
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return myStepBuilderFactory.get("testStep").tasklet((theStepContribution, theChunkContext) -> {
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System.out.println("woo!");
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return RepeatStatus.FINISHED;
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}).build();
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}
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}
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@ -2,11 +2,17 @@ package ca.uhn.fhir.jpa.batch.svc;
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import ca.uhn.fhir.jpa.batch.BaseBatchR4Test;
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import org.junit.Test;
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import org.springframework.batch.core.JobParameters;
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import org.springframework.batch.core.JobParametersInvalidException;
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import org.springframework.batch.core.repository.JobExecutionAlreadyRunningException;
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import org.springframework.batch.core.repository.JobInstanceAlreadyCompleteException;
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import org.springframework.batch.core.repository.JobRestartException;
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public class BatchSvcTest extends BaseBatchR4Test {
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@Test
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public void testApplicationContextLoads(){
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public void testApplicationContextLoads() throws JobParametersInvalidException, JobExecutionAlreadyRunningException, JobRestartException, JobInstanceAlreadyCompleteException {
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myDummyService.test();
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myJobLauncher.run(myJob, new JobParameters());
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}
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}
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@ -1,7 +1,7 @@
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<configuration>
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<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
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<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
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<level>TRACE</level>
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<level>INFO</level>
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</filter>
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<encoder>
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<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
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@ -19,7 +19,7 @@
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<logger name="org.eclipse.jetty.websocket" additivity="false" level="info">
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<appender-ref ref="STDOUT" />
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</logger>
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<logger name="org.eclipse" additivity="false" level="error">
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</logger>
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@ -48,7 +48,7 @@
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<appender-ref ref="STDOUT" />
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</logger>
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<appender name="BATCH_TROUBLESHOOTING" class="ch.qos.logback.core.rolling.RollingFileAppender">
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<filter class="ch.qos.logback.classic.filter.ThresholdFilter"><level>DEBUG</level></filter>
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<filter class="ch.qos.logback.classic.filter.ThresholdFilter"><level>INFO</level></filter>
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<file>${smile.basedir}/log/batch-troubleshooting.log</file>
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<rollingPolicy class="ch.qos.logback.core.rolling.FixedWindowRollingPolicy">
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<fileNamePattern>${smile.basedir}/log/batch-troubleshooting.log.%i.gz</fileNamePattern>
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@ -42,6 +42,12 @@
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<artifactId>hapi-fhir-jpaserver-base</artifactId>
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<version>${project.version}</version>
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</dependency>
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<!-- Need this for the schema files from spring batch -->
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<dependency>
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<groupId>org.springframework.batch</groupId>
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<artifactId>spring-batch-core</artifactId>
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<version>4.2.2.RELEASE</version>
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</dependency>
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<!-- Test Database -->
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<dependency>
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@ -0,0 +1,35 @@
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package ca.uhn.fhir.jpa.migrate.providers;
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import ca.uhn.fhir.jpa.migrate.DriverTypeEnum;
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import ca.uhn.fhir.jpa.migrate.tasks.SchemaInitializationProvider;
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import com.google.common.collect.Maps;
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import javax.annotation.Nonnull;
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import java.util.Map;
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public class SpringBatchSchemaMigrationProvider extends SchemaInitializationProvider {
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private static final Map<DriverTypeEnum, String> ourBatchDriverMap;
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static {
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ourBatchDriverMap = Maps.newHashMap();
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ourBatchDriverMap.put(DriverTypeEnum.H2_EMBEDDED, "schema-h2.sql");
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ourBatchDriverMap.put(DriverTypeEnum.DERBY_EMBEDDED, "schema-derby.sql");
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ourBatchDriverMap.put(DriverTypeEnum.MARIADB_10_1, "schema-mysql.sql");//not sure if correct
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ourBatchDriverMap.put(DriverTypeEnum.MYSQL_5_7, "schema-mysql.sql");//not sure if correct
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ourBatchDriverMap.put(DriverTypeEnum.POSTGRES_9_4, "schema-postgresql.sql");
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ourBatchDriverMap.put(DriverTypeEnum.ORACLE_12C, "schema-oracle10g.sql");//not sure if correct
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ourBatchDriverMap.put(DriverTypeEnum.MSSQL_2012, "schema-mysql.sql");//not sure if correct
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}
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public SpringBatchSchemaMigrationProvider() {
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super("Spring Batch", "/org/springframework/batch/core", "BATCH_JOB_INSTANCE");
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}
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@Nonnull
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@Override
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protected String getInitScript(DriverTypeEnum theDriverType) {
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return ourBatchDriverMap.get(theDriverType);
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}
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}
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@ -21,6 +21,7 @@ package ca.uhn.fhir.jpa.migrate.tasks;
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*/
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import ca.uhn.fhir.jpa.migrate.DriverTypeEnum;
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import ca.uhn.fhir.jpa.migrate.providers.SpringBatchSchemaMigrationProvider;
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import ca.uhn.fhir.jpa.migrate.taskdef.AddColumnTask;
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import ca.uhn.fhir.jpa.migrate.taskdef.ArbitrarySqlTask;
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import ca.uhn.fhir.jpa.migrate.taskdef.BaseTableColumnTypeTask;
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@ -103,6 +104,8 @@ public class HapiFhirJpaMigrationTasks extends BaseMigrationTasks<VersionEnum> {
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empiLink.addIndex("20200517.5", "IDX_EMPI_PERSON_TGT").unique(true).withColumns("PERSON_PID", "TARGET_PID");
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version.initializeSchema("20200526.1", "Spring Batch", new SpringBatchSchemaMigrationProvider());
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}
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protected void init500() { // 20200218 - 20200519
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@ -2,6 +2,7 @@ package ca.uhn.fhir.jpa.migrate.taskdef;
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import ca.uhn.fhir.jpa.migrate.DriverTypeEnum;
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import ca.uhn.fhir.jpa.migrate.JdbcUtils;
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import ca.uhn.fhir.jpa.migrate.providers.SpringBatchSchemaMigrationProvider;
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import ca.uhn.fhir.jpa.migrate.tasks.api.ISchemaInitializationProvider;
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import org.apache.commons.lang3.builder.HashCodeBuilder;
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import org.junit.Test;
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@ -12,6 +13,7 @@ import java.util.List;
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import java.util.function.Supplier;
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import static org.hamcrest.Matchers.containsInAnyOrder;
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import static org.hamcrest.Matchers.hasItems;
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import static org.junit.Assert.assertThat;
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public class InitializeSchemaTaskTest extends BaseTest {
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@ -34,6 +36,21 @@ public class InitializeSchemaTaskTest extends BaseTest {
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getMigrator().migrate();
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}
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@Test
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public void testInitializeBatch() throws SQLException {
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InitializeSchemaTask task = new InitializeSchemaTask("1", "2", new SpringBatchSchemaMigrationProvider());
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getMigrator().addTask(task);
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getMigrator().migrate();
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assertThat(JdbcUtils.getTableNames(getConnectionProperties()), hasItems(
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"BATCH_JOB_INSTANCE",
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"BATCH_JOB_EXECUTION",
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"BATCH_JOB_EXECUTION_PARAMS",
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"BATCH_JOB_EXECUTION_CONTEXT",
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"BATCH_STEP_EXECUTION",
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"BATCH_STEP_EXECUTION_CONTEXT"
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));
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}
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private class TestProvider implements ISchemaInitializationProvider {
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@Override
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public List<String> getSqlStatements(DriverTypeEnum theDriverType) {
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@ -24,10 +24,13 @@ import ca.uhn.fhir.jpa.api.config.DaoConfig;
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import ca.uhn.fhir.jpa.model.config.PartitionSettings;
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import ca.uhn.fhir.jpa.model.entity.ModelConfig;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.Configuration;
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import org.springframework.context.annotation.Primary;
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import org.springframework.orm.jpa.JpaTransactionManager;
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import javax.persistence.EntityManagerFactory;
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// TODO RC1 can use in jpa tests?
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@Configuration
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public class TestJpaConfig {
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@Bean
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public DaoConfig daoConfig() {
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@ -41,6 +44,7 @@ public class TestJpaConfig {
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}
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@Bean
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@Primary
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public JpaTransactionManager transactionManager(EntityManagerFactory entityManagerFactory) {
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JpaTransactionManager retVal = new JpaTransactionManager();
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retVal.setEntityManagerFactory(entityManagerFactory);
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@ -22,8 +22,6 @@ package ca.uhn.fhir.jpa.test;
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import ca.uhn.fhir.jpa.config.TestJpaR4Config;
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import org.springframework.test.context.ContextConfiguration;
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@ContextConfiguration(classes = {TestJpaR4Config.class})
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public abstract class BaseJpaR4Test extends BaseJpaTest {
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}
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