Merge branch 'master' of github.com:jamesagnew/hapi-fhir
This commit is contained in:
jamesagnew
commit
8264f06ef7
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@ -117,56 +117,63 @@ public class Bundle extends BaseBundle /* implements IElement */{
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entry.getTitle().setValue(def.getName() + " " + StringUtils.defaultString(theResource.getId().getValue(), "(no ID)"));
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}
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if (theResource.getId() != null && StringUtils.isNotBlank(theResource.getId().getValue())) {
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if (theResource.getId() != null) {
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if (theResource.getId().isAbsolute()) {
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entry.getLinkSelf().setValue(theResource.getId().getValue());
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entry.getId().setValue(theResource.getId().toVersionless().getValue());
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} else if (StringUtils.isNotBlank(theResource.getId().getValue())) {
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StringBuilder b = new StringBuilder();
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b.append(theServerBase);
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if (b.length() > 0 && b.charAt(b.length() - 1) != '/') {
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StringBuilder b = new StringBuilder();
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b.append(theServerBase);
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if (b.length() > 0 && b.charAt(b.length() - 1) != '/') {
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b.append('/');
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}
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b.append(def.getName());
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b.append('/');
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}
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b.append(def.getName());
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b.append('/');
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String resId = theResource.getId().getIdPart();
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b.append(resId);
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String resId = theResource.getId().getIdPart();
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b.append(resId);
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entry.getId().setValue(b.toString());
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entry.getId().setValue(b.toString());
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if (isNotBlank(theResource.getId().getVersionIdPart())) {
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b.append('/');
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b.append(Constants.PARAM_HISTORY);
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b.append('/');
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b.append(theResource.getId().getVersionIdPart());
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} else {
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IdDt versionId = (IdDt) ResourceMetadataKeyEnum.VERSION_ID.get(theResource);
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if (versionId != null) {
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if (isNotBlank(theResource.getId().getVersionIdPart())) {
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b.append('/');
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b.append(Constants.PARAM_HISTORY);
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b.append('/');
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b.append(versionId.getValue());
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b.append(theResource.getId().getVersionIdPart());
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} else {
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IdDt versionId = (IdDt) ResourceMetadataKeyEnum.VERSION_ID.get(theResource);
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if (versionId != null) {
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b.append('/');
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b.append(Constants.PARAM_HISTORY);
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b.append('/');
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b.append(versionId.getValue());
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}
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}
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}
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String qualifiedId = b.toString();
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entry.getLinkSelf().setValue(qualifiedId);
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String qualifiedId = b.toString();
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entry.getLinkSelf().setValue(qualifiedId);
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// String resourceType = theContext.getResourceDefinition(theResource).getName();
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// String resourceType = theContext.getResourceDefinition(theResource).getName();
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String linkSearch = ResourceMetadataKeyEnum.LINK_SEARCH.get(theResource);
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if (isNotBlank(linkSearch)) {
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if (!UrlUtil.isAbsolute(linkSearch)) {
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linkSearch = (theServerBase + "/" + linkSearch);
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String linkSearch = ResourceMetadataKeyEnum.LINK_SEARCH.get(theResource);
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if (isNotBlank(linkSearch)) {
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if (!UrlUtil.isAbsolute(linkSearch)) {
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linkSearch = (theServerBase + "/" + linkSearch);
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}
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entry.getLinkSearch().setValue(linkSearch);
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}
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entry.getLinkSearch().setValue(linkSearch);
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}
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String linkAlternate = ResourceMetadataKeyEnum.LINK_ALTERNATE.get(theResource);
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if (isNotBlank(linkAlternate)) {
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if (!UrlUtil.isAbsolute(linkAlternate)) {
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linkSearch = (theServerBase + "/" + linkAlternate);
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String linkAlternate = ResourceMetadataKeyEnum.LINK_ALTERNATE.get(theResource);
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if (isNotBlank(linkAlternate)) {
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if (!UrlUtil.isAbsolute(linkAlternate)) {
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linkSearch = (theServerBase + "/" + linkAlternate);
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}
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entry.getLinkAlternate().setValue(linkSearch);
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}
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entry.getLinkAlternate().setValue(linkSearch);
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}
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}
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}
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InstantDt published = ResourceMetadataKeyEnum.PUBLISHED.get(theResource);
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@ -47,6 +47,7 @@ public class DateDt extends BaseDateTimeDt {
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@SimpleSetter(suffix="WithDayPrecision")
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public DateDt(@SimpleSetter.Parameter(name = "theDate") Date theDate) {
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setValue(theDate);
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setPrecision(DEFAULT_PRECISION);
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}
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/**
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@ -511,6 +511,10 @@ public class GenericClient extends BaseClient implements IGenericClient {
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return resp;
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}
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protected EncodingEnum getParamEncoding() {
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return myParamEncoding;
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}
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protected IResource parseResourceBody(String theResourceBody) {
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EncodingEnum encoding = null;
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for (int i = 0; i < theResourceBody.length() && encoding == null; i++) {
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@ -571,6 +575,11 @@ public class GenericClient extends BaseClient implements IGenericClient {
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}
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myId = getPreferredId(myResource, myId);
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// If an explicit encoding is chosen, we will re-serialize to ensure the right encoding
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if (getParamEncoding() != null) {
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myResourceBody = null;
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}
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BaseHttpClientInvocation invocation = MethodUtil.createCreateInvocation(myResource, myResourceBody, myId, myContext);
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RuntimeResourceDefinition def = myContext.getResourceDefinition(myResource);
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@ -1102,6 +1111,11 @@ public class GenericClient extends BaseClient implements IGenericClient {
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throw new InvalidRequestException("No ID supplied for resource to update, can not invoke server");
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}
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// If an explicit encoding is chosen, we will re-serialize to ensure the right encoding
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if (getParamEncoding() != null) {
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myResourceBody = null;
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}
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BaseHttpClientInvocation invocation = MethodUtil.createUpdateInvocation(myResource, myResourceBody, myId, myContext);
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RuntimeResourceDefinition def = myContext.getResourceDefinition(myResource);
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@ -31,4 +31,9 @@ public interface ITransaction {
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ITransactionTyped<Bundle> withBundle(Bundle theResources);
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// *****
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// TODO: add withString version
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// If we add a withString version, make sure to auto-detect content type!
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// *****
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}
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@ -44,6 +44,7 @@ import ca.uhn.fhir.model.dstu.resource.Binary;
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import ca.uhn.fhir.parser.DataFormatException;
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import ca.uhn.fhir.parser.IParser;
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import ca.uhn.fhir.rest.client.BaseHttpClientInvocation;
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import ca.uhn.fhir.rest.server.Constants;
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import ca.uhn.fhir.rest.server.EncodingEnum;
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import ca.uhn.fhir.rest.server.RestfulServer;
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import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
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@ -165,6 +166,10 @@ abstract class BaseHttpClientInvocationWithContents extends BaseHttpClientInvoca
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EncodingEnum encoding = null;
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encoding = theEncoding;
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if (myContents != null) {
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encoding = MethodUtil.detectEncoding(myContents);
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}
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if (encoding == EncodingEnum.JSON) {
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parser = myContext.newJsonParser();
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} else {
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@ -174,6 +179,7 @@ abstract class BaseHttpClientInvocationWithContents extends BaseHttpClientInvoca
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AbstractHttpEntity entity;
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if (myParams != null) {
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contentType= null;
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List<NameValuePair> parameters = new ArrayList<NameValuePair>();
|
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for (Entry<String, List<String>> nextParam : myParams.entrySet()) {
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List<String> value = nextParam.getValue();
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@ -215,7 +221,9 @@ abstract class BaseHttpClientInvocationWithContents extends BaseHttpClientInvoca
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HttpRequestBase retVal = createRequest(url, entity);
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super.addHeadersToRequest(retVal);
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// retVal.addHeader(Constants.HEADER_CONTENT_TYPE, con);
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if (contentType != null) {
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retVal.addHeader(Constants.HEADER_CONTENT_TYPE, contentType);
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}
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return retVal;
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}
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|
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@ -115,7 +115,8 @@ public class MethodUtil {
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}
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addTagsToPostOrPut(theResource, retVal);
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// addContentTypeHeaderBasedOnDetectedType(retVal, theResourceBody);
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return retVal;
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}
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@ -260,9 +261,23 @@ public class MethodUtil {
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}
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addTagsToPostOrPut(theResource, retVal);
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// addContentTypeHeaderBasedOnDetectedType(retVal, theResourceBody);
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return retVal;
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}
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public static EncodingEnum detectEncoding(String theBody) {
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for (int i = 0; i < theBody.length(); i++) {
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switch (theBody.charAt(i)) {
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case '<':
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return EncodingEnum.XML;
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case '{':
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return EncodingEnum.JSON;
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}
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}
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return EncodingEnum.XML;
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}
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public static HttpGetClientInvocation createConformanceInvocation() {
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return new HttpGetClientInvocation("metadata");
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}
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|
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@ -312,14 +312,28 @@ public abstract class BaseFhirDao implements IDao {
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continue;
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}
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String nextPath = nextSpDef.getPath();
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String nextPathsUnsplit = nextSpDef.getPath();
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if (isBlank(nextPathsUnsplit)) {
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continue;
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}
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boolean multiType = false;
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if (nextPath.endsWith("[x]")) {
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if (nextPathsUnsplit.endsWith("[x]")) {
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multiType = true;
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}
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List<Object> values = t.getValues(theResource, nextPath);
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List<Object> values = new ArrayList<Object>();
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String[] nextPathsSplit = nextPathsUnsplit.split("\\|");
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for (String nextPath : nextPathsSplit) {
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String nextPathTrimmed = nextPath.trim();
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try {
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values.addAll(t.getValues(theResource, nextPathTrimmed));
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} catch (Exception e) {
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ourLog.warn("Failed to index values from path[{}] in resource type[{}]: ", nextPathTrimmed, def.getName(), e.toString());
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}
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}
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for (Object nextObject : values) {
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if (nextObject == null) {
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continue;
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@ -338,7 +352,7 @@ public abstract class BaseFhirDao implements IDao {
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String typeString = nextValue.getReference().getResourceType();
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if (isBlank(typeString)) {
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throw new InvalidRequestException("Invalid resource reference found at path[" + nextPath + "] - Does not contain resource type - " + nextValue.getReference().getValue());
|
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throw new InvalidRequestException("Invalid resource reference found at path[" + nextPathsUnsplit + "] - Does not contain resource type - " + nextValue.getReference().getValue());
|
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}
|
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Class<? extends IResource> type = getContext().getResourceDefinition(typeString).getImplementingClass();
|
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String id = nextValue.getReference().getIdPart();
|
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|
|
@ -355,14 +369,14 @@ public abstract class BaseFhirDao implements IDao {
|
|||
valueOf = translateForcedIdToPid(nextValue.getReference());
|
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} catch (Exception e) {
|
||||
String resName = getContext().getResourceDefinition(type).getName();
|
||||
throw new InvalidRequestException("Resource " + resName + "/" + id + " not found, specified in path: " + nextPath + " (this is an invalid ID, must be numeric on this server)");
|
||||
throw new InvalidRequestException("Resource " + resName + "/" + id + " not found, specified in path: " + nextPathsUnsplit + " (this is an invalid ID, must be numeric on this server)");
|
||||
}
|
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ResourceTable target = myEntityManager.find(ResourceTable.class, valueOf);
|
||||
if (target == null) {
|
||||
String resName = getContext().getResourceDefinition(type).getName();
|
||||
throw new InvalidRequestException("Resource " + resName + "/" + id + " not found, specified in path: " + nextPath);
|
||||
throw new InvalidRequestException("Resource " + resName + "/" + id + " not found, specified in path: " + nextPathsUnsplit);
|
||||
}
|
||||
nextEntity = new ResourceLink(nextPath, theEntity, target);
|
||||
nextEntity = new ResourceLink(nextPathsUnsplit, theEntity, target);
|
||||
} else {
|
||||
if (!multiType) {
|
||||
throw new ConfigurationException("Search param " + nextSpDef.getName() + " is of unexpected datatype: " + nextObject.getClass());
|
||||
|
|
@ -392,6 +406,9 @@ public abstract class BaseFhirDao implements IDao {
|
|||
}
|
||||
|
||||
String nextPath = nextSpDef.getPath();
|
||||
if (isBlank(nextPath)) {
|
||||
continue;
|
||||
}
|
||||
|
||||
boolean multiType = false;
|
||||
if (nextPath.endsWith("[x]")) {
|
||||
|
|
@ -447,6 +464,10 @@ public abstract class BaseFhirDao implements IDao {
|
|||
}
|
||||
|
||||
String nextPath = nextSpDef.getPath();
|
||||
if (isBlank(nextPath)) {
|
||||
continue;
|
||||
}
|
||||
|
||||
List<Object> values = t.getValues(theResource, nextPath);
|
||||
for (Object nextObject : values) {
|
||||
if (nextObject == null || ((IDatatype) nextObject).isEmpty()) {
|
||||
|
|
@ -526,6 +547,10 @@ public abstract class BaseFhirDao implements IDao {
|
|||
}
|
||||
|
||||
String nextPath = nextSpDef.getPath();
|
||||
if (isBlank(nextPath)) {
|
||||
continue;
|
||||
}
|
||||
|
||||
List<Object> values = t.getValues(theResource, nextPath);
|
||||
for (Object nextObject : values) {
|
||||
if (nextObject == null || ((IDatatype) nextObject).isEmpty()) {
|
||||
|
|
@ -572,12 +597,13 @@ public abstract class BaseFhirDao implements IDao {
|
|||
if (nextSpDef.getParamType() != SearchParamTypeEnum.STRING) {
|
||||
continue;
|
||||
}
|
||||
if (nextSpDef.getPath().isEmpty()) {
|
||||
continue; // TODO: implement phoenetic, and any others that have
|
||||
// no path
|
||||
}
|
||||
|
||||
String nextPath = nextSpDef.getPath();
|
||||
if (isBlank(nextPath)) {
|
||||
// TODO: implement phoenetic, and any others that have no path
|
||||
continue;
|
||||
}
|
||||
|
||||
List<Object> values = t.getValues(theResource, nextPath);
|
||||
for (Object nextObject : values) {
|
||||
if (nextObject == null || ((IDatatype) nextObject).isEmpty()) {
|
||||
|
|
@ -663,9 +689,9 @@ public abstract class BaseFhirDao implements IDao {
|
|||
}
|
||||
|
||||
String nextPath = nextSpDef.getPath();
|
||||
if (nextPath.isEmpty()) {
|
||||
if (isBlank(nextPath)) {
|
||||
continue;
|
||||
}
|
||||
}
|
||||
|
||||
boolean multiType = false;
|
||||
if (nextPath.endsWith("[x]")) {
|
||||
|
|
|
|||
|
|
@ -138,8 +138,12 @@
|
|||
<packageBase>ca.uhn.test.jpasrv</packageBase>
|
||||
<baseResourceNames>
|
||||
<baseResourceName>device</baseResourceName>
|
||||
<baseResourceName>documentmanifest</baseResourceName>
|
||||
<baseResourceName>documentreference</baseResourceName>
|
||||
<baseResourceName>encounter</baseResourceName>
|
||||
<baseResourceName>diagnosticorder</baseResourceName>
|
||||
<baseResourceName>diagnosticreport</baseResourceName>
|
||||
<baseResourceName>imagingstudy</baseResourceName>
|
||||
<baseResourceName>location</baseResourceName>
|
||||
<baseResourceName>observation</baseResourceName>
|
||||
<baseResourceName>organization</baseResourceName>
|
||||
|
|
|
|||
|
|
@ -24,6 +24,9 @@
|
|||
<bean id="myDiagnosticReportDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
|
||||
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.DiagnosticReport"/>
|
||||
</bean>
|
||||
<bean id="myImagingStudyDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
|
||||
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.ImagingStudy"/>
|
||||
</bean>
|
||||
<bean id="myLocationDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
|
||||
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Location"/>
|
||||
</bean>
|
||||
|
|
@ -43,6 +46,17 @@
|
|||
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Encounter"/>
|
||||
</bean>
|
||||
|
||||
<bean id="myDiagnosticOrderDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
|
||||
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.DiagnosticOrder"/>
|
||||
</bean>
|
||||
<bean id="myDocumentManifestDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
|
||||
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.DocumentManifest"/>
|
||||
</bean>
|
||||
<bean id="myDocumentReferenceDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
|
||||
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.DocumentReference"/>
|
||||
</bean>
|
||||
|
||||
|
||||
<bean id="myPersistenceDataSource" class="org.springframework.jdbc.datasource.DriverManagerDataSource" lazy-init="true">
|
||||
<property name="url" value="jdbc:derby:memory:myUnitTestDB;create=true" />
|
||||
<!-- <property name="url" value="jdbc:derby:directory:myUnitTestDB;create=true" /> -->
|
||||
|
|
|
|||
|
|
@ -1,10 +1,14 @@
|
|||
package ca.uhn.fhir.jpa.test;
|
||||
|
||||
import static org.hamcrest.Matchers.*;
|
||||
import static org.junit.Assert.*;
|
||||
import static org.hamcrest.Matchers.containsString;
|
||||
import static org.junit.Assert.assertEquals;
|
||||
import static org.junit.Assert.assertNotNull;
|
||||
import static org.junit.Assert.assertThat;
|
||||
import static org.junit.Assert.fail;
|
||||
|
||||
import java.util.Date;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.eclipse.jetty.server.Server;
|
||||
import org.eclipse.jetty.servlet.ServletContextHandler;
|
||||
import org.eclipse.jetty.servlet.ServletHolder;
|
||||
|
|
@ -22,7 +26,11 @@ import ca.uhn.fhir.model.api.Bundle;
|
|||
import ca.uhn.fhir.model.api.IResource;
|
||||
import ca.uhn.fhir.model.dstu.composite.PeriodDt;
|
||||
import ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt;
|
||||
import ca.uhn.fhir.model.dstu.resource.DiagnosticOrder;
|
||||
import ca.uhn.fhir.model.dstu.resource.DocumentManifest;
|
||||
import ca.uhn.fhir.model.dstu.resource.DocumentReference;
|
||||
import ca.uhn.fhir.model.dstu.resource.Encounter;
|
||||
import ca.uhn.fhir.model.dstu.resource.ImagingStudy;
|
||||
import ca.uhn.fhir.model.dstu.resource.Location;
|
||||
import ca.uhn.fhir.model.dstu.resource.Observation;
|
||||
import ca.uhn.fhir.model.dstu.resource.Organization;
|
||||
|
|
@ -41,7 +49,11 @@ import ca.uhn.fhir.rest.gclient.TokenClientParam;
|
|||
import ca.uhn.fhir.rest.server.RestfulServer;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
|
||||
import ca.uhn.test.jpasrv.DiagnosticOrderResourceProvider;
|
||||
import ca.uhn.test.jpasrv.DocumentManifestResourceProvider;
|
||||
import ca.uhn.test.jpasrv.DocumentReferenceResourceProvider;
|
||||
import ca.uhn.test.jpasrv.EncounterResourceProvider;
|
||||
import ca.uhn.test.jpasrv.ImagingStudyResourceProvider;
|
||||
import ca.uhn.test.jpasrv.LocationResourceProvider;
|
||||
import ca.uhn.test.jpasrv.ObservationResourceProvider;
|
||||
import ca.uhn.test.jpasrv.OrganizationResourceProvider;
|
||||
|
|
@ -49,58 +61,74 @@ import ca.uhn.test.jpasrv.PatientResourceProvider;
|
|||
|
||||
public class CompleteResourceProviderTest {
|
||||
|
||||
private static IFhirResourceDao<Observation> observationDao;
|
||||
private static ClassPathXmlApplicationContext ourAppCtx;
|
||||
|
||||
private static IGenericClient ourClient;
|
||||
private static FhirContext ourCtx;
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(CompleteResourceProviderTest.class);
|
||||
private static IFhirResourceDao<Observation> ourObservationDao;
|
||||
private static IFhirResourceDao<Patient> ourPatientDao;
|
||||
private static IFhirResourceDao<Questionnaire> ourQuestionnaireDao;
|
||||
private static IFhirResourceDao<ImagingStudy> ourImagingStudyDao;
|
||||
private static Server ourServer;
|
||||
private static IFhirResourceDao<Patient> patientDao;
|
||||
|
||||
// private static JpaConformanceProvider ourConfProvider;
|
||||
|
||||
// @Test
|
||||
// public void test01UploadTestResources() throws Exception {
|
||||
//
|
||||
// IGenericClient client = ourCtx.newRestfulGenericClient("http://localhost:8888/fhir/context");
|
||||
//
|
||||
// File[] files = new File("src/test/resources/resources").listFiles(new PatternFilenameFilter(".*patient.*"));
|
||||
// for (File file : files) {
|
||||
// ourLog.info("Uploading: {}", file);
|
||||
// Patient patient = ourCtx.newXmlParser().parseResource(Patient.class, new FileReader(file));
|
||||
// client.create(patient);
|
||||
// }
|
||||
//
|
||||
// files = new File("src/test/resources/resources").listFiles(new PatternFilenameFilter(".*questionnaire.*"));
|
||||
// for (File file : files) {
|
||||
// ourLog.info("Uploading: {}", file);
|
||||
// Questionnaire patient = ourCtx.newXmlParser().parseResource(Questionnaire.class, new FileReader(file));
|
||||
// client.create(patient);
|
||||
// }
|
||||
//
|
||||
// }
|
||||
|
||||
private static IFhirResourceDao<Questionnaire> questionnaireDao;
|
||||
|
||||
/**
|
||||
* See issue #52
|
||||
*/
|
||||
@Test
|
||||
public void testUpdateWithClientSuppliedIdWhichDoesntExist() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testUpdateWithClientSuppliedIdWhichDoesntExist");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testUpdateWithClientSuppliedIdWhichDoesntExist");
|
||||
MethodOutcome outcome = ourClient.update().resource(p1).withId("testUpdateWithClientSuppliedIdWhichDoesntExist").execute();
|
||||
assertEquals(true, outcome.getCreated().booleanValue());
|
||||
IdDt p1Id = outcome.getId();
|
||||
|
||||
assertThat(p1Id.getValue(), containsString("Patient/testUpdateWithClientSuppliedIdWhichDoesntExist/_history"));
|
||||
|
||||
Bundle actual = ourClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndCode("urn:system", "testUpdateWithClientSuppliedIdWhichDoesntExist")).encodedJson().prettyPrint().execute();
|
||||
assertEquals(1, actual.size());
|
||||
assertEquals(p1Id.getIdPart(), actual.getEntries().get(0).getId().getIdPart());
|
||||
|
||||
public void testImagingStudyResources() throws Exception {
|
||||
IGenericClient client = ourClient;
|
||||
|
||||
int initialSize = client.search().forResource(ImagingStudy.class).execute().size();
|
||||
|
||||
String resBody = IOUtils.toString(CompleteResourceProviderTest.class.getResource("/imagingstudy.json"));
|
||||
client.create().resource(resBody).execute();
|
||||
|
||||
int newSize = client.search().forResource(ImagingStudy.class).execute().size();
|
||||
|
||||
assertEquals(1, newSize - initialSize);
|
||||
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* See issue #52
|
||||
*/
|
||||
@Test
|
||||
public void testDiagnosticOrderResources() throws Exception {
|
||||
IGenericClient client = ourClient;
|
||||
|
||||
int initialSize = client.search().forResource(DiagnosticOrder.class).execute().size();
|
||||
|
||||
DiagnosticOrder res = new DiagnosticOrder();
|
||||
res.addIdentifier("urn:foo", "123");
|
||||
|
||||
client.create().resource(res).execute();
|
||||
|
||||
int newSize = client.search().forResource(DiagnosticOrder.class).execute().size();
|
||||
|
||||
assertEquals(1, newSize - initialSize);
|
||||
|
||||
}
|
||||
|
||||
|
||||
private void delete(String theResourceType, String theParamName, String theParamValue) {
|
||||
Bundle resources = ourClient.search().forResource(theResourceType).where(new StringClientParam(theParamName).matches().value(theParamValue)).execute();
|
||||
for (IResource next : resources.toListOfResources()) {
|
||||
ourLog.info("Deleting resource: {}", next.getId());
|
||||
ourClient.delete().resource(next).execute();
|
||||
}
|
||||
}
|
||||
|
||||
private void deleteToken(String theResourceType, String theParamName, String theParamSystem, String theParamValue) {
|
||||
Bundle resources = ourClient.search().forResource(theResourceType).where(new TokenClientParam(theParamName).exactly().systemAndCode(theParamSystem, theParamValue)).execute();
|
||||
for (IResource next : resources.toListOfResources()) {
|
||||
ourLog.info("Deleting resource: {}", next.getId());
|
||||
ourClient.delete().resource(next).execute();
|
||||
}
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testCreateWithClientSuppliedId() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testCreateWithId01");
|
||||
|
|
@ -130,134 +158,6 @@ public class CompleteResourceProviderTest {
|
|||
assertNotNull(history.getEntries().get(0).getResource());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testTryToCreateResourceWithReferenceThatDoesntExist() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testTryToCreateResourceWithReferenceThatDoesntExist01");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testTryToCreateResourceWithReferenceThatDoesntExist01");
|
||||
p1.addName().addFamily("testTryToCreateResourceWithReferenceThatDoesntExistFamily01").addGiven("testTryToCreateResourceWithReferenceThatDoesntExistGiven01");
|
||||
p1.setManagingOrganization(new ResourceReferenceDt("Organization/1323123232349875324987529835"));
|
||||
|
||||
try {
|
||||
ourClient.create(p1).getId();
|
||||
fail();
|
||||
} catch (InvalidRequestException e) {
|
||||
assertThat(e.getMessage(), containsString("Organization/1323123232349875324987529835"));
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSaveAndRetrieveExistingNarrative() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testSaveAndRetrieveExistingNarrative01");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.getText().setStatus(NarrativeStatusEnum.GENERATED);
|
||||
p1.getText().getDiv().setValueAsString("<div>HELLO WORLD</div>");
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testSaveAndRetrieveExistingNarrative01");
|
||||
|
||||
IdDt newId = ourClient.create(p1).getId();
|
||||
|
||||
Patient actual = ourClient.read(Patient.class, newId);
|
||||
assertEquals("<div xmlns=\"http://www.w3.org/1999/xhtml\">HELLO WORLD</div>", actual.getText().getDiv().getValueAsString());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSaveAndRetrieveWithoutNarrative() {
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testSearchByResourceChain01");
|
||||
|
||||
IdDt newId = ourClient.create(p1).getId();
|
||||
|
||||
Patient actual = ourClient.read(Patient.class, newId);
|
||||
assertThat(actual.getText().getDiv().getValueAsString(), containsString("<td>Identifier</td><td>testSearchByResourceChain01</td>"));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSaveAndRetrieveWithContained() {
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testSaveAndRetrieveWithContained01");
|
||||
|
||||
Organization o1 = new Organization();
|
||||
o1.addIdentifier().setSystem("urn:system").setValue("testSaveAndRetrieveWithContained02");
|
||||
|
||||
p1.getManagingOrganization().setResource(o1);
|
||||
|
||||
IdDt newId = ourClient.create().resource(p1).execute().getId();
|
||||
|
||||
Patient actual = ourClient.read(Patient.class, newId);
|
||||
assertEquals(1, actual.getContained().getContainedResources().size());
|
||||
assertThat(actual.getText().getDiv().getValueAsString(), containsString("<td>Identifier</td><td>testSaveAndRetrieveWithContained01</td>"));
|
||||
|
||||
Bundle b = ourClient.search().forResource("Patient").where(Patient.IDENTIFIER.exactly().systemAndCode("urn:system","testSaveAndRetrieveWithContained01")).execute();
|
||||
assertEquals(1, b.size());
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testSearchByIdentifier() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testSearchByIdentifier01");
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testSearchByIdentifier02");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testSearchByIdentifier01");
|
||||
p1.addName().addFamily("testSearchByIdentifierFamily01").addGiven("testSearchByIdentifierGiven01");
|
||||
IdDt p1Id = ourClient.create(p1).getId();
|
||||
|
||||
Patient p2 = new Patient();
|
||||
p2.addIdentifier().setSystem("urn:system").setValue("testSearchByIdentifier02");
|
||||
p2.addName().addFamily("testSearchByIdentifierFamily01").addGiven("testSearchByIdentifierGiven02");
|
||||
ourClient.create(p2).getId();
|
||||
|
||||
Bundle actual = ourClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndCode("urn:system", "testSearchByIdentifier01")).encodedJson().prettyPrint().execute();
|
||||
assertEquals(1, actual.size());
|
||||
assertEquals(p1Id.getIdPart(), actual.getEntries().get(0).getId().getIdPart());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchByIdentifierWithoutSystem() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "", "testSearchByIdentifierWithoutSystem01");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setValue("testSearchByIdentifierWithoutSystem01");
|
||||
IdDt p1Id = ourClient.create(p1).getId();
|
||||
|
||||
Bundle actual = ourClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndCode(null, "testSearchByIdentifierWithoutSystem01")).encodedJson().prettyPrint().execute();
|
||||
assertEquals(1, actual.size());
|
||||
assertEquals(p1Id.getIdPart(), actual.getEntries().get(0).getId().getIdPart());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testUpdateRejectsInvalidTypes() throws InterruptedException {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testUpdateRejectsInvalidTypes");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier("urn:system", "testUpdateRejectsInvalidTypes");
|
||||
p1.addName().addFamily("Tester").addGiven("testUpdateRejectsInvalidTypes");
|
||||
IdDt p1id = ourClient.create().resource(p1).execute().getId();
|
||||
|
||||
Organization p2 = new Organization();
|
||||
p2.getName().setValue("testUpdateRejectsInvalidTypes");
|
||||
try {
|
||||
ourClient.update().resource(p2).withId("Organization/" + p1id.getIdPart()).execute();
|
||||
fail();
|
||||
} catch (UnprocessableEntityException e) {
|
||||
// good
|
||||
}
|
||||
|
||||
try {
|
||||
ourClient.update().resource(p2).withId("Patient/" + p1id.getIdPart()).execute();
|
||||
fail();
|
||||
} catch (UnprocessableEntityException e) {
|
||||
// good
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDeepChaining() {
|
||||
delete("Location", Location.SP_NAME, "testDeepChainingL1");
|
||||
|
|
@ -297,20 +197,86 @@ public class CompleteResourceProviderTest {
|
|||
|
||||
}
|
||||
|
||||
private void delete(String theResourceType, String theParamName, String theParamValue) {
|
||||
Bundle resources = ourClient.search().forResource(theResourceType).where(new StringClientParam(theParamName).matches().value(theParamValue)).execute();
|
||||
for (IResource next : resources.toListOfResources()) {
|
||||
ourLog.info("Deleting resource: {}", next.getId());
|
||||
ourClient.delete().resource(next).execute();
|
||||
}
|
||||
@Test
|
||||
public void testSaveAndRetrieveExistingNarrative() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testSaveAndRetrieveExistingNarrative01");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.getText().setStatus(NarrativeStatusEnum.GENERATED);
|
||||
p1.getText().getDiv().setValueAsString("<div>HELLO WORLD</div>");
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testSaveAndRetrieveExistingNarrative01");
|
||||
|
||||
IdDt newId = ourClient.create(p1).getId();
|
||||
|
||||
Patient actual = ourClient.read(Patient.class, newId);
|
||||
assertEquals("<div xmlns=\"http://www.w3.org/1999/xhtml\">HELLO WORLD</div>", actual.getText().getDiv().getValueAsString());
|
||||
}
|
||||
|
||||
private void deleteToken(String theResourceType, String theParamName, String theParamSystem, String theParamValue) {
|
||||
Bundle resources = ourClient.search().forResource(theResourceType).where(new TokenClientParam(theParamName).exactly().systemAndCode(theParamSystem, theParamValue)).execute();
|
||||
for (IResource next : resources.toListOfResources()) {
|
||||
ourLog.info("Deleting resource: {}", next.getId());
|
||||
ourClient.delete().resource(next).execute();
|
||||
}
|
||||
@Test
|
||||
public void testSaveAndRetrieveWithContained() {
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testSaveAndRetrieveWithContained01");
|
||||
|
||||
Organization o1 = new Organization();
|
||||
o1.addIdentifier().setSystem("urn:system").setValue("testSaveAndRetrieveWithContained02");
|
||||
|
||||
p1.getManagingOrganization().setResource(o1);
|
||||
|
||||
IdDt newId = ourClient.create().resource(p1).execute().getId();
|
||||
|
||||
Patient actual = ourClient.read(Patient.class, newId);
|
||||
assertEquals(1, actual.getContained().getContainedResources().size());
|
||||
assertThat(actual.getText().getDiv().getValueAsString(), containsString("<td>Identifier</td><td>testSaveAndRetrieveWithContained01</td>"));
|
||||
|
||||
Bundle b = ourClient.search().forResource("Patient").where(Patient.IDENTIFIER.exactly().systemAndCode("urn:system", "testSaveAndRetrieveWithContained01")).execute();
|
||||
assertEquals(1, b.size());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSaveAndRetrieveWithoutNarrative() {
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testSearchByResourceChain01");
|
||||
|
||||
IdDt newId = ourClient.create(p1).getId();
|
||||
|
||||
Patient actual = ourClient.read(Patient.class, newId);
|
||||
assertThat(actual.getText().getDiv().getValueAsString(), containsString("<td>Identifier</td><td>testSearchByResourceChain01</td>"));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchByIdentifier() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testSearchByIdentifier01");
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testSearchByIdentifier02");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testSearchByIdentifier01");
|
||||
p1.addName().addFamily("testSearchByIdentifierFamily01").addGiven("testSearchByIdentifierGiven01");
|
||||
IdDt p1Id = ourClient.create(p1).getId();
|
||||
|
||||
Patient p2 = new Patient();
|
||||
p2.addIdentifier().setSystem("urn:system").setValue("testSearchByIdentifier02");
|
||||
p2.addName().addFamily("testSearchByIdentifierFamily01").addGiven("testSearchByIdentifierGiven02");
|
||||
ourClient.create(p2).getId();
|
||||
|
||||
Bundle actual = ourClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndCode("urn:system", "testSearchByIdentifier01")).encodedJson().prettyPrint().execute();
|
||||
assertEquals(1, actual.size());
|
||||
assertEquals(p1Id.getIdPart(), actual.getEntries().get(0).getId().getIdPart());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchByIdentifierWithoutSystem() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "", "testSearchByIdentifierWithoutSystem01");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setValue("testSearchByIdentifierWithoutSystem01");
|
||||
IdDt p1Id = ourClient.create(p1).getId();
|
||||
|
||||
Bundle actual = ourClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndCode(null, "testSearchByIdentifierWithoutSystem01")).encodedJson().prettyPrint()
|
||||
.execute();
|
||||
assertEquals(1, actual.size());
|
||||
assertEquals(p1Id.getIdPart(), actual.getEntries().get(0).getId().getIdPart());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
|
|
@ -348,6 +314,70 @@ public class CompleteResourceProviderTest {
|
|||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testTryToCreateResourceWithReferenceThatDoesntExist() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testTryToCreateResourceWithReferenceThatDoesntExist01");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testTryToCreateResourceWithReferenceThatDoesntExist01");
|
||||
p1.addName().addFamily("testTryToCreateResourceWithReferenceThatDoesntExistFamily01").addGiven("testTryToCreateResourceWithReferenceThatDoesntExistGiven01");
|
||||
p1.setManagingOrganization(new ResourceReferenceDt("Organization/1323123232349875324987529835"));
|
||||
|
||||
try {
|
||||
ourClient.create(p1).getId();
|
||||
fail();
|
||||
} catch (InvalidRequestException e) {
|
||||
assertThat(e.getMessage(), containsString("Organization/1323123232349875324987529835"));
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testUpdateRejectsInvalidTypes() throws InterruptedException {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testUpdateRejectsInvalidTypes");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier("urn:system", "testUpdateRejectsInvalidTypes");
|
||||
p1.addName().addFamily("Tester").addGiven("testUpdateRejectsInvalidTypes");
|
||||
IdDt p1id = ourClient.create().resource(p1).execute().getId();
|
||||
|
||||
Organization p2 = new Organization();
|
||||
p2.getName().setValue("testUpdateRejectsInvalidTypes");
|
||||
try {
|
||||
ourClient.update().resource(p2).withId("Organization/" + p1id.getIdPart()).execute();
|
||||
fail();
|
||||
} catch (UnprocessableEntityException e) {
|
||||
// good
|
||||
}
|
||||
|
||||
try {
|
||||
ourClient.update().resource(p2).withId("Patient/" + p1id.getIdPart()).execute();
|
||||
fail();
|
||||
} catch (UnprocessableEntityException e) {
|
||||
// good
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testUpdateWithClientSuppliedIdWhichDoesntExist() {
|
||||
deleteToken("Patient", Patient.SP_IDENTIFIER, "urn:system", "testUpdateWithClientSuppliedIdWhichDoesntExist");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier().setSystem("urn:system").setValue("testUpdateWithClientSuppliedIdWhichDoesntExist");
|
||||
MethodOutcome outcome = ourClient.update().resource(p1).withId("testUpdateWithClientSuppliedIdWhichDoesntExist").execute();
|
||||
assertEquals(true, outcome.getCreated().booleanValue());
|
||||
IdDt p1Id = outcome.getId();
|
||||
|
||||
assertThat(p1Id.getValue(), containsString("Patient/testUpdateWithClientSuppliedIdWhichDoesntExist/_history"));
|
||||
|
||||
Bundle actual = ourClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndCode("urn:system", "testUpdateWithClientSuppliedIdWhichDoesntExist")).encodedJson()
|
||||
.prettyPrint().execute();
|
||||
assertEquals(1, actual.size());
|
||||
assertEquals(p1Id.getIdPart(), actual.getEntries().get(0).getId().getIdPart());
|
||||
|
||||
}
|
||||
|
||||
@AfterClass
|
||||
public static void afterClass() throws Exception {
|
||||
ourServer.stop();
|
||||
|
|
@ -364,17 +394,17 @@ public class CompleteResourceProviderTest {
|
|||
if (true) {
|
||||
ourAppCtx = new ClassPathXmlApplicationContext("fhir-spring-test-config.xml");
|
||||
|
||||
patientDao = (IFhirResourceDao<Patient>) ourAppCtx.getBean("myPatientDao", IFhirResourceDao.class);
|
||||
ourPatientDao = (IFhirResourceDao<Patient>) ourAppCtx.getBean("myPatientDao", IFhirResourceDao.class);
|
||||
PatientResourceProvider patientRp = new PatientResourceProvider();
|
||||
patientRp.setDao(patientDao);
|
||||
patientRp.setDao(ourPatientDao);
|
||||
|
||||
questionnaireDao = (IFhirResourceDao<Questionnaire>) ourAppCtx.getBean("myQuestionnaireDao", IFhirResourceDao.class);
|
||||
ourQuestionnaireDao = (IFhirResourceDao<Questionnaire>) ourAppCtx.getBean("myQuestionnaireDao", IFhirResourceDao.class);
|
||||
QuestionnaireResourceProvider questionnaireRp = new QuestionnaireResourceProvider();
|
||||
questionnaireRp.setDao(questionnaireDao);
|
||||
questionnaireRp.setDao(ourQuestionnaireDao);
|
||||
|
||||
observationDao = (IFhirResourceDao<Observation>) ourAppCtx.getBean("myObservationDao", IFhirResourceDao.class);
|
||||
ourObservationDao = (IFhirResourceDao<Observation>) ourAppCtx.getBean("myObservationDao", IFhirResourceDao.class);
|
||||
ObservationResourceProvider observationRp = new ObservationResourceProvider();
|
||||
observationRp.setDao(observationDao);
|
||||
observationRp.setDao(ourObservationDao);
|
||||
|
||||
IFhirResourceDao<Location> locationDao = (IFhirResourceDao<Location>) ourAppCtx.getBean("myLocationDao", IFhirResourceDao.class);
|
||||
LocationResourceProvider locationRp = new LocationResourceProvider();
|
||||
|
|
@ -388,7 +418,23 @@ public class CompleteResourceProviderTest {
|
|||
OrganizationResourceProvider organizationRp = new OrganizationResourceProvider();
|
||||
organizationRp.setDao(organizationDao);
|
||||
|
||||
restServer.setResourceProviders(encounterRp, locationRp, patientRp, questionnaireRp, observationRp, organizationRp);
|
||||
IFhirResourceDao<ImagingStudy> imagingStudyDao = (IFhirResourceDao<ImagingStudy>) ourAppCtx.getBean("myImagingStudyDao", IFhirResourceDao.class);
|
||||
ImagingStudyResourceProvider imagingStudyRp = new ImagingStudyResourceProvider();
|
||||
imagingStudyRp.setDao(imagingStudyDao);
|
||||
|
||||
IFhirResourceDao<DiagnosticOrder> diagnosticOrderDao =ourAppCtx.getBean("myDiagnosticOrderDao", IFhirResourceDao.class);
|
||||
DiagnosticOrderResourceProvider diagnosticOrderRp = new DiagnosticOrderResourceProvider();
|
||||
diagnosticOrderRp.setDao(diagnosticOrderDao);
|
||||
|
||||
IFhirResourceDao<DocumentManifest> documentManifestDao =ourAppCtx.getBean("myDocumentManifestDao", IFhirResourceDao.class);
|
||||
DocumentManifestResourceProvider documentManifestRp = new DocumentManifestResourceProvider();
|
||||
documentManifestRp.setDao(documentManifestDao);
|
||||
|
||||
IFhirResourceDao<DocumentReference> documentReferenceDao =ourAppCtx.getBean("myDocumentReferenceDao", IFhirResourceDao.class);
|
||||
DocumentReferenceResourceProvider documentReferenceRp = new DocumentReferenceResourceProvider();
|
||||
documentReferenceRp.setDao(documentReferenceDao);
|
||||
|
||||
restServer.setResourceProviders(diagnosticOrderRp, documentManifestRp, documentReferenceRp, encounterRp, locationRp, patientRp, questionnaireRp, observationRp, organizationRp, imagingStudyRp);
|
||||
restServer.getFhirContext().setNarrativeGenerator(new DefaultThymeleafNarrativeGenerator());
|
||||
|
||||
IFhirSystemDao systemDao = (IFhirSystemDao) ourAppCtx.getBean("mySystemDao", IFhirSystemDao.class);
|
||||
|
|
@ -414,7 +460,7 @@ public class CompleteResourceProviderTest {
|
|||
}
|
||||
|
||||
ourCtx = restServer.getFhirContext();
|
||||
// ourCtx.getRestfulClientFactory().setProxy("localhost", 8888);
|
||||
// ourCtx.getRestfulClientFactory().setProxy("localhost", 8888);
|
||||
|
||||
ourClient = ourCtx.newRestfulGenericClient(serverBase);
|
||||
// ourClient = ourCtx.newRestfulGenericClient("http://fhir.healthintersections.com.au/open");
|
||||
|
|
|
|||
|
|
@ -0,0 +1,2 @@
|
|||
{
|
||||
"resourceType" : "ImagingStudy","text" : {"status" : "generated","div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\">Image 1 from Series 3: CT Images on Patient MINT (MINT1234) taken at 1-Jan 2011 01:20 AM</div>"},"dateTime" : "2011-01-01T11:01:20","uid" : "urn:oid:2.16.124.113543.6003.1154777499.30246.19789.3503430045","numberOfSeries" : 1,"numberOfInstances" : 1,"series" : [{"number" : 3,"modality" : "CT","uid" : "urn:oid:2.16.124.113543.6003.2588828330.45298.17418.2723805630","description" : "CT Surview 180","numberOfInstances" : 1,"instance" : [{"number" : 1,"uid" : "urn:oid:2.16.124.113543.6003.189642796.63084.16748.2599092903","sopclass" : "urn:oid:1.2.840.10008.5.1.4.1.1.2","url" : "http://localhost/fhir/Binary/@1.2.840.11361907579238403408700.3.0.14.19970327150033"}]}]}
|
||||
|
|
@ -1,5 +1,5 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<faceted-project>
|
||||
<installed facet="jst.utility" version="1.0"/>
|
||||
<installed facet="java" version="1.7"/>
|
||||
<installed facet="java" version="1.6"/>
|
||||
</faceted-project>
|
||||
|
|
|
|||
|
|
@ -4,6 +4,7 @@ import static org.hamcrest.Matchers.*;
|
|||
import static org.junit.Assert.*;
|
||||
import static org.mockito.Mockito.*;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.StringReader;
|
||||
import java.net.URLEncoder;
|
||||
import java.nio.charset.Charset;
|
||||
|
|
@ -23,6 +24,7 @@ import org.apache.http.client.methods.HttpPut;
|
|||
import org.apache.http.client.methods.HttpUriRequest;
|
||||
import org.apache.http.message.BasicHeader;
|
||||
import org.apache.http.message.BasicStatusLine;
|
||||
import org.apache.http.util.EncodingUtils;
|
||||
import org.hamcrest.core.StringContains;
|
||||
import org.junit.Before;
|
||||
import org.junit.BeforeClass;
|
||||
|
|
@ -177,25 +179,133 @@ public class GenericClientTest {
|
|||
assertEquals("44", outcome.getId().getIdPart());
|
||||
assertEquals("22", outcome.getId().getVersionIdPart());
|
||||
|
||||
int count = 0;
|
||||
|
||||
assertEquals("http://example.com/fhir/Patient", capt.getValue().getURI().toString());
|
||||
assertEquals("POST", capt.getValue().getMethod());
|
||||
Header catH = capt.getValue().getFirstHeader("Category");
|
||||
assertNotNull(Arrays.asList(capt.getValue().getAllHeaders()).toString(), catH);
|
||||
assertEquals("urn:happytag; label=\"This is a happy resource\"; scheme=\"http://hl7.org/fhir/tag\"", catH.getValue());
|
||||
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.XML.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
count++;
|
||||
|
||||
/*
|
||||
* Try fluent options
|
||||
*/
|
||||
when(myHttpResponse.getEntity().getContent()).thenReturn(new ReaderInputStream(new StringReader(""), Charset.forName("UTF-8")));
|
||||
client.create().resource(p1).withId("123").execute();
|
||||
assertEquals("http://example.com/fhir/Patient/123", capt.getAllValues().get(1).getURI().toString());
|
||||
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.XML.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
count++;
|
||||
|
||||
String resourceText = "<Patient xmlns=\"http://hl7.org/fhir\"> </Patient>";
|
||||
when(myHttpResponse.getEntity().getContent()).thenReturn(new ReaderInputStream(new StringReader(""), Charset.forName("UTF-8")));
|
||||
client.create().resource(resourceText).withId("123").execute();
|
||||
assertEquals("http://example.com/fhir/Patient/123", capt.getAllValues().get(2).getURI().toString());
|
||||
assertEquals(resourceText, IOUtils.toString(((HttpPost) capt.getAllValues().get(2)).getEntity().getContent()));
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.XML.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
count++;
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testCreateWithStringAutoDetectsEncoding() throws Exception {
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier("foo:bar", "12345");
|
||||
p1.addName().addFamily("Smith").addGiven("John");
|
||||
|
||||
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
|
||||
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
|
||||
when(myHttpResponse.getStatusLine()).thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 201, "OK"));
|
||||
when(myHttpResponse.getAllHeaders()).thenReturn(new Header[] { new BasicHeader(Constants.HEADER_LOCATION, "/Patient/44/_history/22") });
|
||||
when(myHttpResponse.getEntity().getContentType()).thenReturn(new BasicHeader("content-type", Constants.CT_FHIR_XML + "; charset=UTF-8"));
|
||||
when(myHttpResponse.getEntity().getContent()).thenReturn(new ReaderInputStream(new StringReader(""), Charset.forName("UTF-8")));
|
||||
|
||||
IGenericClient client = myCtx.newRestfulGenericClient("http://example.com/fhir");
|
||||
|
||||
int count = 0;
|
||||
client.create().resource(myCtx.newXmlParser().encodeResourceToString(p1)).execute();
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.XML.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
assertThat(extractBody(capt, count), containsString("value=\"John\""));
|
||||
count++;
|
||||
|
||||
client.create().resource(myCtx.newJsonParser().encodeResourceToString(p1)).execute();
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.JSON.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
assertThat(extractBody(capt, count), containsString("[\"John\"]"));
|
||||
count++;
|
||||
|
||||
/*
|
||||
* e.g. Now try with reversed encoding (provide a string that's in JSON and ask the client to use XML)
|
||||
*/
|
||||
|
||||
client.create().resource(myCtx.newXmlParser().encodeResourceToString(p1)).encodedJson().execute();
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.JSON.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
assertThat(extractBody(capt, count), containsString("[\"John\"]"));
|
||||
count++;
|
||||
|
||||
client.create().resource(myCtx.newJsonParser().encodeResourceToString(p1)).encodedXml().execute();
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.XML.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
assertThat(extractBody(capt, count), containsString("value=\"John\""));
|
||||
count++;
|
||||
|
||||
}
|
||||
|
||||
private String extractBody(ArgumentCaptor<HttpUriRequest> capt, int count) throws IOException {
|
||||
String body = IOUtils.toString(((HttpEntityEnclosingRequestBase) capt.getAllValues().get(count)).getEntity().getContent());
|
||||
return body;
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testUpdateWithStringAutoDetectsEncoding() throws Exception {
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addIdentifier("foo:bar", "12345");
|
||||
p1.addName().addFamily("Smith").addGiven("John");
|
||||
|
||||
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
|
||||
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
|
||||
when(myHttpResponse.getStatusLine()).thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 201, "OK"));
|
||||
when(myHttpResponse.getAllHeaders()).thenReturn(new Header[] { new BasicHeader(Constants.HEADER_LOCATION, "/Patient/44/_history/22") });
|
||||
when(myHttpResponse.getEntity().getContentType()).thenReturn(new BasicHeader("content-type", Constants.CT_FHIR_XML + "; charset=UTF-8"));
|
||||
when(myHttpResponse.getEntity().getContent()).thenReturn(new ReaderInputStream(new StringReader(""), Charset.forName("UTF-8")));
|
||||
|
||||
IGenericClient client = myCtx.newRestfulGenericClient("http://example.com/fhir");
|
||||
|
||||
int count = 0;
|
||||
client.update().resource(myCtx.newXmlParser().encodeResourceToString(p1)).withId("1").execute();
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.XML.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
assertThat(extractBody(capt, count), containsString("value=\"John\""));
|
||||
count++;
|
||||
|
||||
client.update().resource(myCtx.newJsonParser().encodeResourceToString(p1)).withId("1").execute();
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.JSON.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
assertThat(extractBody(capt, count), containsString("[\"John\"]"));
|
||||
count++;
|
||||
|
||||
/*
|
||||
* e.g. Now try with reversed encoding (provide a string that's in JSON and ask the client to use XML)
|
||||
*/
|
||||
|
||||
client.update().resource(myCtx.newXmlParser().encodeResourceToString(p1)).withId("1").encodedJson().execute();
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.JSON.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
assertThat(extractBody(capt, count), containsString("[\"John\"]"));
|
||||
count++;
|
||||
|
||||
client.update().resource(myCtx.newJsonParser().encodeResourceToString(p1)).withId("1").encodedXml().execute();
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.XML.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
assertThat(extractBody(capt, count), containsString("value=\"John\""));
|
||||
count++;
|
||||
}
|
||||
|
||||
@Test
|
||||
|
|
@ -503,8 +613,7 @@ public class GenericClientTest {
|
|||
capt.getValue().getURI().toString());
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
@Test
|
||||
public void testSearchWithAbsoluteUrl() throws Exception {
|
||||
|
||||
|
|
@ -518,7 +627,9 @@ public class GenericClientTest {
|
|||
|
||||
IGenericClient client = myCtx.newRestfulGenericClient("http://example.com/fhir");
|
||||
|
||||
Bundle response = client.search(new UriDt("http://example.com/fhir/Patient?birthdate=%3C%3D2012-01-22&birthdate=%3E2011-01-01&_include=Patient.managingOrganization&_sort%3Aasc=birthdate&_sort%3Adesc=name&_count=123&_format=json"));
|
||||
Bundle response = client
|
||||
.search(new UriDt(
|
||||
"http://example.com/fhir/Patient?birthdate=%3C%3D2012-01-22&birthdate=%3E2011-01-01&_include=Patient.managingOrganization&_sort%3Aasc=birthdate&_sort%3Adesc=name&_count=123&_format=json"));
|
||||
|
||||
assertEquals(
|
||||
"http://example.com/fhir/Patient?birthdate=%3C%3D2012-01-22&birthdate=%3E2011-01-01&_include=Patient.managingOrganization&_sort%3Aasc=birthdate&_sort%3Adesc=name&_count=123&_format=json",
|
||||
|
|
@ -527,7 +638,6 @@ public class GenericClientTest {
|
|||
assertEquals(1, response.size());
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testSearchWithAbsoluteUrlAndType() throws Exception {
|
||||
|
||||
|
|
@ -541,7 +651,10 @@ public class GenericClientTest {
|
|||
|
||||
IGenericClient client = myCtx.newRestfulGenericClient("http://example.com/fhir");
|
||||
|
||||
Bundle response = client.search(Patient.class, new UriDt("http://example.com/fhir/Patient?birthdate=%3C%3D2012-01-22&birthdate=%3E2011-01-01&_include=Patient.managingOrganization&_sort%3Aasc=birthdate&_sort%3Adesc=name&_count=123&_format=json"));
|
||||
Bundle response = client
|
||||
.search(Patient.class,
|
||||
new UriDt(
|
||||
"http://example.com/fhir/Patient?birthdate=%3C%3D2012-01-22&birthdate=%3E2011-01-01&_include=Patient.managingOrganization&_sort%3Aasc=birthdate&_sort%3Adesc=name&_count=123&_format=json"));
|
||||
|
||||
assertEquals(
|
||||
"http://example.com/fhir/Patient?birthdate=%3C%3D2012-01-22&birthdate=%3E2011-01-01&_include=Patient.managingOrganization&_sort%3Aasc=birthdate&_sort%3Adesc=name&_count=123&_format=json",
|
||||
|
|
@ -549,7 +662,7 @@ public class GenericClientTest {
|
|||
|
||||
assertEquals(1, response.size());
|
||||
}
|
||||
|
||||
|
||||
@SuppressWarnings("unused")
|
||||
@Test
|
||||
public void testSearchByNumberExact() throws Exception {
|
||||
|
|
@ -975,19 +1088,26 @@ public class GenericClientTest {
|
|||
p1.setId("44");
|
||||
client.update().resource(p1).execute();
|
||||
|
||||
int count = 0;
|
||||
|
||||
assertEquals(1, capt.getAllValues().size());
|
||||
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.XML.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
count++;
|
||||
|
||||
MethodOutcome outcome = client.update().resource(p1).execute();
|
||||
assertEquals("44", outcome.getId().getIdPart());
|
||||
assertEquals("22", outcome.getId().getVersionIdPart());
|
||||
|
||||
assertEquals(2, capt.getAllValues().size());
|
||||
|
||||
|
||||
assertEquals("http://example.com/fhir/Patient/44", capt.getValue().getURI().toString());
|
||||
assertEquals("PUT", capt.getValue().getMethod());
|
||||
Header catH = capt.getValue().getFirstHeader("Category");
|
||||
assertNotNull(Arrays.asList(capt.getValue().getAllHeaders()).toString(), catH);
|
||||
assertEquals("urn:happytag; label=\"This is a happy resource\"; scheme=\"http://hl7.org/fhir/tag\"", catH.getValue());
|
||||
assertEquals(1, capt.getAllValues().get(count).getHeaders(Constants.HEADER_CONTENT_TYPE).length);
|
||||
assertEquals(EncodingEnum.XML.getResourceContentType(), capt.getAllValues().get(count).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
|
||||
|
||||
/*
|
||||
* Try fluent options
|
||||
|
|
|
|||
|
|
@ -25,6 +25,7 @@ import org.junit.Before;
|
|||
import org.junit.BeforeClass;
|
||||
import org.junit.Test;
|
||||
|
||||
import ca.uhn.fhir.model.api.Bundle;
|
||||
import ca.uhn.fhir.model.api.IResource;
|
||||
import ca.uhn.fhir.model.dstu.composite.HumanNameDt;
|
||||
import ca.uhn.fhir.model.dstu.composite.IdentifierDt;
|
||||
|
|
@ -223,6 +224,25 @@ public class ServerFeaturesTest {
|
|||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchReturnWithAbsoluteIdSpecified() throws Exception {
|
||||
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient/?_query=findPatientsWithAbsoluteIdSpecified");
|
||||
httpGet.addHeader("Accept", Constants.CT_FHIR_XML + "; pretty=true");
|
||||
CloseableHttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
|
||||
Bundle bundle = servlet.getFhirContext().newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(1,bundle.size());
|
||||
|
||||
assertEquals("http://absolute.com/Patient/123", bundle.getEntries().get(0).getId().getValue());
|
||||
assertEquals("http://absolute.com/Patient/123/_history/22", bundle.getEntries().get(0).getLinkSelf().getValue());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchWithWildcardRetVal() throws Exception {
|
||||
|
||||
|
|
@ -345,6 +365,15 @@ public class ServerFeaturesTest {
|
|||
return Collections.singletonList(p);
|
||||
}
|
||||
|
||||
@Search(queryName = "findPatientsWithAbsoluteIdSpecified")
|
||||
public List<Patient> findPatientsWithAbsoluteIdSpecified() {
|
||||
Patient p = new Patient();
|
||||
p.addIdentifier().setSystem("foo");
|
||||
p.setId("http://absolute.com/Patient/123/_history/22");
|
||||
return Collections.singletonList(p);
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public Class<Patient> getResourceType() {
|
||||
return Patient.class;
|
||||
|
|
|
|||
|
|
@ -102,6 +102,30 @@
|
|||
invalid dates, e.g. "2001-15-01". Thanks to Joe Athman for reporting and
|
||||
helping to come up with a fix!
|
||||
</action>
|
||||
<action type="add">
|
||||
When using Generic Client, if performing a
|
||||
<![CDATA[create]]> or <![CDATA[update]]> operation using a String as the resource body,
|
||||
the client will auto-detect the FHIR encoding style and send an appropriate Content-Type header.
|
||||
</action>
|
||||
<action type="fix" issue="52">
|
||||
JPA module (and public HAPI-FHIR test server) were unable to process resource types
|
||||
where at least one search parameter has no path specified. These now correctly save
|
||||
(although the server does not yet process these params, and it should). Thanks to
|
||||
GitHub user shvoidlee for reporting and help with analysis!
|
||||
</action>
|
||||
<action type="fix">
|
||||
Generic/Fluent Client "create" and "update" method requests were not setting a content type header
|
||||
</action>
|
||||
<action type="add" issue="53" dev="petromykhailysyn">
|
||||
DateDt left precision value as null in the constructor
|
||||
<![CDATA[DateDt(Date)]]>.
|
||||
</action>
|
||||
<action type="fix">
|
||||
RESTful server now doesn't overwrite resource IDs if they are absolute. In other words, if
|
||||
a server's Resource Provider returns a resource with ID "Patient/123" it will be translated to
|
||||
"[base url]/Patient/123" but if the RP returns ID "http://foo/Patient/123" the ID will be
|
||||
returned exactly as is. Thanks to Bill de Beaubien for the suggestion!
|
||||
</action>
|
||||
</release>
|
||||
<release version="0.7" date="2014-Oct-23">
|
||||
<action type="add" issue="30">
|
||||
|
|
|
|||
Loading…
Reference in New Issue