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Merge branch 'master' of github.com:jamesagnew/hapi-fhir 

Conflicts:
	hapi-fhir-tutorial/simple-server/src/main/java/ca/uhn/fhir/example/ex3/Example03_PatientResourceProvider.java
	hapi-fhir-tutorial/simple-server/src/main/java/ca/uhn/fhir/example/ex3/Example03_SimpleRestfulServer.java
	src/changes/changes.xml
This commit is contained in:
James Agnew 2014-12-03 13:49:19 -05:00
parent 3ca9fbbebb df05f00b80
commit 826fa1d7c1
25 changed files with 1007 additions and 136 deletions
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1
.classpath
View File

@ -1,5 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="src" path="hapi-fhir-structures-dstu/target/generated-sources/tinder"/>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
<classpathentry kind="output" path="bin"/>
</classpath>

35
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/base/composite/BaseHumanNameDt.java
View File

@ -20,6 +20,9 @@ package ca.uhn.fhir.model.base.composite;
* #L%
*/
import java.util.ArrayList;
import java.util.List;
import org.apache.commons.lang3.builder.ToStringBuilder;
import org.apache.commons.lang3.builder.ToStringStyle;
@ -100,6 +103,28 @@ public abstract class BaseHumanNameDt extends BaseIdentifiableElement {
return ca.uhn.fhir.util.DatatypeUtil.joinStringsSpaceSeparated(getSuffix());
}
/**
* Gets the value(s) for <b>text</b> (Text representation of the full name).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* A full text representation of the name
* </p>
*/
public abstract StringDt getText() ;
/**
* Sets the value(s) for <b>text</b> (Text representation of the full name)
*
* <p>
* <b>Definition:</b>
* A full text representation of the name
* </p>
*/
public abstract BaseHumanNameDt setText(StringDt theValue);
@Override
public String toString() {
ToStringBuilder b = new ToStringBuilder(this, ToStringStyle.SHORT_PREFIX_STYLE);
@ -108,4 +133,14 @@ public abstract class BaseHumanNameDt extends BaseIdentifiableElement {
return b.toString();
}
public String getNameAsSingleString(){
List<StringDt> nameParts = new ArrayList<StringDt>();
nameParts.addAll(getPrefix());
nameParts.addAll(getGiven());
nameParts.addAll(getFamily());
nameParts.addAll(getSuffix());
if(nameParts.size() > 0) return ca.uhn.fhir.util.DatatypeUtil.joinStringsSpaceSeparated(nameParts);
else return getText().getValue();
}
}

127
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/primitive/BaseDateTimeDt.java
View File

@ -42,16 +42,11 @@ import ca.uhn.fhir.parser.DataFormatException;
public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
/**
* For unit tests only
*/
static List<FastDateFormat> getFormatters() {
return ourFormatters;
}
/*
* Add any new formatters to the static block below!!
*/
private static final List<FastDateFormat> ourFormatters;
private static final Pattern ourYearDashMonthDashDayPattern = Pattern.compile("[0-9]{4}-[0-9]{2}-[0-9]{2}");
private static final Pattern ourYearDashMonthPattern = Pattern.compile("[0-9]{4}-[0-9]{2}");
private static final FastDateFormat ourYearFormat = FastDateFormat.getInstance("yyyy");
@ -67,8 +62,8 @@ public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
private static final FastDateFormat ourYearMonthFormat = FastDateFormat.getInstance("yyyy-MM");
private static final FastDateFormat ourYearMonthNoDashesFormat = FastDateFormat.getInstance("yyyyMM");
private static final Pattern ourYearMonthPattern = Pattern.compile("[0-9]{4}[0-9]{2}");
private static final Pattern ourYearPattern = Pattern.compile("[0-9]{4}");
static {
ArrayList<FastDateFormat> formatters = new ArrayList<FastDateFormat>();
formatters.add(ourYearFormat);
@ -86,9 +81,51 @@ public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
}
private TemporalPrecisionEnum myPrecision = TemporalPrecisionEnum.SECOND;
private TimeZone myTimeZone;
private TimeZone myTimeZone;
private boolean myTimeZoneZulu = false;
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(BaseDateTimeDt.class);
/**
* Constructor
*/
public BaseDateTimeDt() {
// nothing
}
/**
* Constructor
*
* @throws DataFormatException
* If the specified precision is not allowed for this type
*/
public BaseDateTimeDt(Date theDate, TemporalPrecisionEnum thePrecision) {
setValue(theDate, thePrecision);
if (isPrecisionAllowed(thePrecision) == false) {
throw new DataFormatException("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support " + thePrecision + " precision): " + theDate);
}
}
/**
* Constructor
*
* @throws DataFormatException
* If the specified precision is not allowed for this type
*/
public BaseDateTimeDt(String theString) {
setValueAsString(theString);
if (isPrecisionAllowed(getPrecision()) == false) {
throw new DataFormatException("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support " + getPrecision() + " precision): " + theString);
}
}
/**
* Constructor
*/
public BaseDateTimeDt(Date theDate, TemporalPrecisionEnum thePrecision, TimeZone theTimeZone) {
this(theDate, thePrecision);
setTimeZone(theTimeZone);
}
private void clearTimeZone() {
myTimeZone = null;
@ -136,6 +173,10 @@ public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
}
}
/**
* Returns the default precision for the given datatype
*/
protected abstract TemporalPrecisionEnum getDefaultPrecisionForDatatype();
/**
* Gets the precision for this datatype (using the default for the given type if not set)
@ -150,13 +191,8 @@ public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
}
/**
* Returns the default precision for the given datatype
*/
protected abstract TemporalPrecisionEnum getDefaultPrecisionForDatatype();
/**
* Returns the TimeZone associated with this dateTime's value. May return
* <code>null</code> if no timezone was supplied.
* Returns the TimeZone associated with this dateTime's value. May return <code>null</code> if no timezone was
* supplied.
*/
public TimeZone getTimeZone() {
return myTimeZone;
@ -204,57 +240,52 @@ public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
protected Date parse(String theValue) throws DataFormatException {
try {
if (theValue.length() == 4 && ourYearPattern.matcher(theValue).matches()) {
if (isPrecisionAllowed(YEAR)) {
if (!isPrecisionAllowed(YEAR)) {
ourLog.debug("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support YEAR precision): " + theValue);
}
setPrecision(YEAR);
clearTimeZone();
return ((ourYearFormat).parse(theValue));
} else {
throw new DataFormatException("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support YEAR precision): " + theValue);
}
} else if (theValue.length() == 6 && ourYearMonthPattern.matcher(theValue).matches()) {
// Eg. 198401 (allow this just to be lenient)
if (isPrecisionAllowed(MONTH)) {
if (!isPrecisionAllowed(MONTH)) {
ourLog.debug("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support DAY precision): " + theValue);
}
setPrecision(MONTH);
clearTimeZone();
return ((ourYearMonthNoDashesFormat).parse(theValue));
} else {
throw new DataFormatException("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support DAY precision): " + theValue);
}
} else if (theValue.length() == 7 && ourYearDashMonthPattern.matcher(theValue).matches()) {
// E.g. 1984-01 (this is valid according to the spec)
if (isPrecisionAllowed(MONTH)) {
if (!isPrecisionAllowed(MONTH)) {
ourLog.debug("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support MONTH precision): " + theValue);
}
setPrecision(MONTH);
clearTimeZone();
return ((ourYearMonthFormat).parse(theValue));
} else {
throw new DataFormatException("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support MONTH precision): " + theValue);
}
} else if (theValue.length() == 8 && ourYearMonthDayPattern.matcher(theValue).matches()) {
// Eg. 19840101 (allow this just to be lenient)
if (isPrecisionAllowed(DAY)) {
if (!isPrecisionAllowed(DAY)) {
ourLog.debug("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support DAY precision): " + theValue);
}
setPrecision(DAY);
clearTimeZone();
return ((ourYearMonthDayNoDashesFormat).parse(theValue));
} else {
throw new DataFormatException("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support DAY precision): " + theValue);
}
} else if (theValue.length() == 10 && ourYearDashMonthDashDayPattern.matcher(theValue).matches()) {
// E.g. 1984-01-01 (this is valid according to the spec)
if (isPrecisionAllowed(DAY)) {
if (!isPrecisionAllowed(DAY)) {
ourLog.debug("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support DAY precision): " + theValue);
}
setPrecision(DAY);
clearTimeZone();
return ((ourYearMonthDayFormat).parse(theValue));
} else {
throw new DataFormatException("Invalid date/time string (datatype " + getClass().getSimpleName() + " does not support DAY precision): " + theValue);
}
} else if (theValue.length() >= 18) { // date and time with possible time zone
int dotIndex = theValue.indexOf('.', 18);
boolean hasMillis = dotIndex > -1;
if (!hasMillis && !isPrecisionAllowed(SECOND)) {
throw new DataFormatException("Invalid date/time string (data type does not support SECONDS precision): " + theValue);
ourLog.debug("Invalid date/time string (data type does not support SECONDS precision): " + theValue);
} else if (hasMillis && !isPrecisionAllowed(MILLI)) {
throw new DataFormatException("Invalid date/time string (data type " + getClass().getSimpleName() + " does not support MILLIS precision):" + theValue);
ourLog.debug("Invalid date/time string (data type " + getClass().getSimpleName() + " does not support MILLIS precision):" + theValue);
}
Date retVal;
@ -262,10 +293,11 @@ public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
try {
if (hasOffset(theValue)) {
retVal = ourYearMonthDayTimeMilliZoneFormat.parse(theValue);
} else if (theValue.endsWith("Z"))
} else if (theValue.endsWith("Z")) {
retVal = ourYearMonthDayTimeMilliUTCZFormat.parse(theValue);
else
} else {
retVal = ourYearMonthDayTimeMilliFormat.parse(theValue);
}
} catch (ParseException p2) {
throw new DataFormatException("Invalid data/time string (" + p2.getMessage() + "): " + theValue);
}
@ -316,8 +348,6 @@ public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
updateStringValue();
}
private void setTimeZone(String theValueString, boolean hasMillis) {
clearTimeZone();
int timeZoneStart = 19;
@ -332,13 +362,11 @@ public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
}
}
public void setTimeZone(TimeZone theTimeZone) {
myTimeZone = theTimeZone;
updateStringValue();
}
public void setTimeZoneZulu(boolean theTimeZoneZulu) {
myTimeZoneZulu = theTimeZoneZulu;
updateStringValue();
@ -353,8 +381,10 @@ public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
/**
* Sets the value of this date/time using the specified level of precision
*
* @param theValue The date value
* @param thePrecision The precision
* @param theValue
* The date value
* @param thePrecision
* The precision
* @throws DataFormatException
*/
public void setValue(Date theValue, TemporalPrecisionEnum thePrecision) throws DataFormatException {
@ -369,4 +399,11 @@ public abstract class BaseDateTimeDt extends BasePrimitive<Date> {
super.setValueAsString(theValue);
}
/**
* For unit tests only
*/
static List<FastDateFormat> getFormatters() {
return ourFormatters;
}
}

30
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/primitive/DateDt.java
View File

@ -25,7 +25,16 @@ import java.util.Date;
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
import ca.uhn.fhir.model.api.annotation.DatatypeDef;
import ca.uhn.fhir.model.api.annotation.SimpleSetter;
import ca.uhn.fhir.parser.DataFormatException;
/**
* Represents a FHIR date datatype. Valid precisions values for this type are:
* <ul>
* <li>{@link TemporalPrecisionEnum#YEAR}
* <li>{@link TemporalPrecisionEnum#MONTH}
* <li>{@link TemporalPrecisionEnum#DAY}
* </ul>
*/
@DatatypeDef(name = "date")
public class DateDt extends BaseDateTimeDt {
@ -44,10 +53,9 @@ public class DateDt extends BaseDateTimeDt {
/**
* Constructor which accepts a date value and uses the {@link #DEFAULT_PRECISION} for this type
*/
@SimpleSetter(suffix="WithDayPrecision")
@SimpleSetter(suffix = "WithDayPrecision")
public DateDt(@SimpleSetter.Parameter(name = "theDate") Date theDate) {
setValue(theDate);
setPrecision(DEFAULT_PRECISION);
super(theDate, DEFAULT_PRECISION);
}
/**
@ -57,11 +65,23 @@ public class DateDt extends BaseDateTimeDt {
* <li>{@link TemporalPrecisionEnum#MONTH}
* <li>{@link TemporalPrecisionEnum#DAY}
* </ul>
*
* @throws DataFormatException
* If the specified precision is not allowed for this type
*/
@SimpleSetter
public DateDt(@SimpleSetter.Parameter(name = "theDate") Date theDate, @SimpleSetter.Parameter(name = "thePrecision") TemporalPrecisionEnum thePrecision) {
setValue(theDate);
setPrecision(thePrecision);
super(theDate, thePrecision);
}
/**
* Constructor which accepts a date as a string in FHIR format
*
* @throws DataFormatException
* If the precision in the date string is not allowed for this type
*/
public DateDt(String theDate) {
super(theDate);
}
@Override

69
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/primitive/DateTimeDt.java
View File

@ -26,7 +26,18 @@ import java.util.TimeZone;
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
import ca.uhn.fhir.model.api.annotation.DatatypeDef;
import ca.uhn.fhir.model.api.annotation.SimpleSetter;
import ca.uhn.fhir.parser.DataFormatException;
/**
* Represents a FHIR dateTime datatype. Valid precisions values for this type are:
* <ul>
* <li>{@link TemporalPrecisionEnum#YEAR}
* <li>{@link TemporalPrecisionEnum#MONTH}
* <li>{@link TemporalPrecisionEnum#DAY}
* <li>{@link TemporalPrecisionEnum#SECOND}
* <li>{@link TemporalPrecisionEnum#MILLI}
* </ul>
*/
@DatatypeDef(name = "dateTime")
public class DateTimeDt extends BaseDateTimeDt {
@ -43,18 +54,44 @@ public class DateTimeDt extends BaseDateTimeDt {
}
/**
* Create a new DateTimeDt
* Create a new DateTimeDt with seconds precision and the local time zone
*/
@SimpleSetter(suffix = "WithSecondsPrecision")
public DateTimeDt(@SimpleSetter.Parameter(name = "theDate") Date theDate) {
setValue(theDate);
setPrecision(DEFAULT_PRECISION);
setTimeZone(TimeZone.getDefault());
super(theDate, DEFAULT_PRECISION, TimeZone.getDefault());
}
/**
* Constructor which accepts a date value and a precision value. Valid
* precisions values for this type are:
* Constructor which accepts a date value and a precision value. Valid precisions values for this type are:
* <ul>
* <li>{@link TemporalPrecisionEnum#YEAR}
* <li>{@link TemporalPrecisionEnum#MONTH}
* <li>{@link TemporalPrecisionEnum#DAY}
* <li>{@link TemporalPrecisionEnum#SECOND}
* <li>{@link TemporalPrecisionEnum#MILLI}
* </ul>
*
* @throws DataFormatException
* If the specified precision is not allowed for this type
*/
@SimpleSetter
public DateTimeDt(@SimpleSetter.Parameter(name = "theDate") Date theDate, @SimpleSetter.Parameter(name = "thePrecision") TemporalPrecisionEnum thePrecision) {
super(theDate, thePrecision, TimeZone.getDefault());
}
/**
* Create a new instance using a string date/time
*
* @throws DataFormatException
* If the specified precision is not allowed for this type
*/
public DateTimeDt(String theValue) {
super(theValue);
}
/**
* Constructor which accepts a date value, precision value, and time zone. Valid precisions values for this type
* are:
* <ul>
* <li>{@link TemporalPrecisionEnum#YEAR}
* <li>{@link TemporalPrecisionEnum#MONTH}
@ -63,18 +100,8 @@ public class DateTimeDt extends BaseDateTimeDt {
* <li>{@link TemporalPrecisionEnum#MILLI}
* </ul>
*/
@SimpleSetter
public DateTimeDt(@SimpleSetter.Parameter(name = "theDate") Date theDate, @SimpleSetter.Parameter(name = "thePrecision") TemporalPrecisionEnum thePrecision) {
setValue(theDate);
setPrecision(thePrecision);
setTimeZone(TimeZone.getDefault());
}
/**
* Create a new instance using a string date/time
*/
public DateTimeDt(String theValue) {
setValueAsString(theValue);
public DateTimeDt(Date theDate, TemporalPrecisionEnum thePrecision, TimeZone theTimezone) {
super(theDate, thePrecision, theTimezone);
}
@Override
@ -92,10 +119,11 @@ public class DateTimeDt extends BaseDateTimeDt {
}
/**
* Returns a new instance of DateTimeDt with the current system time and SECOND precision
* Returns a new instance of DateTimeDt with the current system time and SECOND precision and the system local time
* zone
*/
public static DateTimeDt withCurrentTime() {
return new DateTimeDt(new Date(), TemporalPrecisionEnum.SECOND);
return new DateTimeDt(new Date(), TemporalPrecisionEnum.SECOND, TimeZone.getDefault());
}
/**
@ -108,5 +136,4 @@ public class DateTimeDt extends BaseDateTimeDt {
return DEFAULT_PRECISION;
}
}

35
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/primitive/InstantDt.java
View File

@ -29,6 +29,13 @@ import ca.uhn.fhir.model.api.annotation.DatatypeDef;
import ca.uhn.fhir.model.api.annotation.SimpleSetter;
import ca.uhn.fhir.parser.DataFormatException;
/**
* Represents a FHIR instant datatype. Valid precisions values for this type are:
* <ul>
* <li>{@link TemporalPrecisionEnum#SECOND}
* <li>{@link TemporalPrecisionEnum#MILLI}
* </ul>
*/
@DatatypeDef(name = "instant")
public class InstantDt extends BaseDateTimeDt {
@ -54,11 +61,20 @@ public class InstantDt extends BaseDateTimeDt {
* Create a new DateTimeDt
*/
public InstantDt(Calendar theCalendar) {
setValue(theCalendar.getTime());
setPrecision(DEFAULT_PRECISION);
setTimeZone(theCalendar.getTimeZone());
super(theCalendar.getTime(), DEFAULT_PRECISION, theCalendar.getTimeZone());
}
/**
* Create a new instance using the given date, precision level, and time zone
*
* @throws DataFormatException
* If the specified precision is not allowed for this type
*/
public InstantDt(Date theDate, TemporalPrecisionEnum thePrecision, TimeZone theTimezone) {
super(theDate, thePrecision, theTimezone);
}
/**
* Create a new DateTimeDt using an existing value. <b>Use this constructor with caution</b>,
* as it may create more precision than warranted (since for example it is possible to pass in
@ -66,19 +82,18 @@ public class InstantDt extends BaseDateTimeDt {
* milliseconds precision).
*/
public InstantDt(BaseDateTimeDt theDateTime) {
// Do not call super(foo) here, we don't want to trigger a DataFormatException
setValue(theDateTime.getValue());
setPrecision(DEFAULT_PRECISION);
setTimeZone(theDateTime.getTimeZone());
}
/**
* Create a new DateTimeDt
* Create a new DateTimeDt with the given date/time and {@link TemporalPrecisionEnum#MILLI} precision
*/
@SimpleSetter(suffix = "WithMillisPrecision")
public InstantDt(@SimpleSetter.Parameter(name = "theDate") Date theDate) {
setValue(theDate);
setPrecision(DEFAULT_PRECISION);
setTimeZone(TimeZone.getDefault());
super(theDate, DEFAULT_PRECISION, TimeZone.getDefault());
}
/**
@ -105,7 +120,7 @@ public class InstantDt extends BaseDateTimeDt {
* @throws DataFormatException
*/
public InstantDt(String theString) {
setValueAsString(theString);
super(theString);
}
/**
@ -154,10 +169,10 @@ public class InstantDt extends BaseDateTimeDt {
/**
* Factory method which creates a new InstantDt with millisecond precision and initializes it with the
* current time.
* current time and the system local timezone.
*/
public static InstantDt withCurrentTime() {
return new InstantDt(new Date(), TemporalPrecisionEnum.MILLI);
return new InstantDt(new Date(), TemporalPrecisionEnum.MILLI, TimeZone.getDefault());
}
/**

2
hapi-fhir-structures-dstu/src/main/java/ca/uhn/fhir/rest/server/audit/PatientAuditor.java
View File

@ -51,7 +51,7 @@ public class PatientAuditor implements IResourceAuditor<Patient> {
@Override
public String getName() {
if(myPatient != null){
return "Patient: " + myPatient.getNameFirstRep().getText().getValue();
return "Patient: " + myPatient.getNameFirstRep().getNameAsSingleString();
}
return null;
}

6
hapi-fhir-structures-dstu/src/main/java/ca/uhn/fhir/rest/server/interceptor/AuditingInterceptor.java
View File

@ -300,9 +300,9 @@ public class AuditingInterceptor extends InterceptorAdapter {
}
/**
* Create a particpant object based on information from the incoming servlet request
* Create a participant object based on information from the incoming servlet request
* @param theServletRequest the incoming request
* @return a Particpant object populated with the user id, user name, and IP
* @return a Participant object populated with the user id, user name, and IP
* @throws InvalidRequestException if auditing is required but userId is not specified as a request header
* @throws NotImplementedException if the authorization type is OAuth
*/
@ -388,6 +388,7 @@ public class AuditingInterceptor extends InterceptorAdapter {
* @return the corresponding SecurityEventActionEnum (Read/View/Print, Create, Delete, etc)
*/
protected SecurityEventActionEnum mapResourceTypeToSecurityEventAction(RestfulOperationTypeEnum resourceOperationType) {
if(resourceOperationType == null) return null;
switch (resourceOperationType) {
case READ: return SecurityEventActionEnum.READ_VIEW_PRINT;
case CREATE: return SecurityEventActionEnum.CREATE;
@ -409,6 +410,7 @@ public class AuditingInterceptor extends InterceptorAdapter {
* @return the corresponding SecurityEventObjectLifecycleEnum (Access/Use, Origination/Creation, Logical Deletion, etc)
*/
protected SecurityEventObjectLifecycleEnum mapResourceTypeToSecurityLifecycle(RestfulOperationTypeEnum resourceOperationType) {
if(resourceOperationType == null) return null;
switch (resourceOperationType) {
case READ: return SecurityEventObjectLifecycleEnum.ACCESS_OR_USE;
case CREATE: return SecurityEventObjectLifecycleEnum.ORIGINATION_OR_CREATION;

92
hapi-fhir-structures-dstu/src/test/java/ca/uhn/fhir/model/primitive/BaseDateTimeDtTest.java
View File

@ -1,25 +1,32 @@
package ca.uhn.fhir.model.primitive;
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
import ca.uhn.fhir.parser.DataFormatException;
import org.apache.commons.lang3.time.FastDateFormat;
import org.junit.Before;
import org.junit.Test;
import static org.hamcrest.Matchers.*;
import static org.junit.Assert.*;
import java.text.SimpleDateFormat;
import java.util.Calendar;
import java.util.Date;
import java.util.TimeZone;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertNull;
import org.apache.commons.lang3.time.FastDateFormat;
import org.hamcrest.Matchers;
import org.junit.Assert;
import org.junit.Before;
import org.junit.Test;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
import ca.uhn.fhir.model.dstu.resource.Condition;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.validation.ValidationResult;
public class BaseDateTimeDtTest {
private SimpleDateFormat myDateInstantParser;
private FastDateFormat myDateInstantZoneParser;
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(BaseDateTimeDtTest.class);
private static FhirContext ourCtx = new FhirContext();
@Before
public void before() {
myDateInstantParser = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss.SSS");
@ -29,11 +36,74 @@ public class BaseDateTimeDtTest {
@Test
public void setTimezoneToZulu() {
DateTimeDt dt = new DateTimeDt(new Date(816411488000L));
// assertEquals("1995-11-14T23:58:08", dt.getValueAsString());
// assertEquals("1995-11-14T23:58:08", dt.getValueAsString());
dt.setTimeZoneZulu(true);
assertEquals("1995-11-15T04:58:08Z", dt.getValueAsString());
}
@Test
public void testDateTimeInLocalTimezone() {
DateTimeDt dt = DateTimeDt.withCurrentTime();
String str = dt.getValueAsString();
char offset = str.charAt(19);
if (offset != '+' && offset != '-') {
fail("No timezone provided: " + str);
}
}
@Test
public void testInstantInLocalTimezone() {
InstantDt dt = InstantDt.withCurrentTime();
String str = dt.getValueAsString();
char offset = str.charAt(23);
if (offset != '+' && offset != '-') {
fail("No timezone provided: " + str);
}
}
/**
* Test for #57
*/
@Test
public void testDateParsesWithInvalidPrecision() {
Condition c = new Condition();
c.setDateAsserted(new DateDt());
c.getDateAsserted().setValueAsString("2001-01-02T11:13:33");
assertEquals(TemporalPrecisionEnum.SECOND, c.getDateAsserted().getPrecision());
String encoded = ourCtx.newXmlParser().encodeResourceToString(c);
Assert.assertThat(encoded, Matchers.containsString("value=\"2001-01-02T11:13:33\""));
c = ourCtx.newXmlParser().parseResource(Condition.class, encoded);
assertEquals("2001-01-02T11:13:33", c.getDateAsserted().getValueAsString());
assertEquals(TemporalPrecisionEnum.SECOND, c.getDateAsserted().getPrecision());
ValidationResult outcome = ourCtx.newValidator().validateWithResult(c);
String outcomeStr = ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(outcome.getOperationOutcome());
ourLog.info(outcomeStr);
assertThat(outcomeStr, containsString("date-primitive"));
}
/**
* Test for #57
*/
@Test
public void testConstructorRejectsInvalidPrecision() {
try {
new DateDt("2001-01-02T11:13:33");
fail();
} catch (DataFormatException e) {
assertThat(e.getMessage(), containsString("precision"));
}
try {
new InstantDt("2001-01-02");
fail();
} catch (DataFormatException e) {
assertThat(e.getMessage(), containsString("precision"));
}
}
@Test
public void testFormats() throws Exception {
@ -65,7 +135,6 @@ public class BaseDateTimeDtTest {
assertEquals(TemporalPrecisionEnum.DAY, dt.getPrecision());
}
@Test()
public void testParseMalformatted() throws DataFormatException {
DateTimeDt dt = new DateTimeDt("20120102");
@ -188,6 +257,7 @@ public class BaseDateTimeDtTest {
assertNotNull(i.getValueAsString());
assertEquals(1403295729000L, i.getValue().getTime());
assertEquals("2014-06-20T20:22:09Z",i.getValueAsString());
assertEquals("2014-06-20T20:22:09Z", i.getValueAsString());
}
}

293
hapi-fhir-structures-dstu/src/test/java/ca/uhn/fhir/rest/server/interceptor/AuditingInterceptorTest.java Normal file
View File

@ -0,0 +1,293 @@
package ca.uhn.fhir.rest.server.interceptor;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.fail;
import static org.mockito.Mockito.mock;
import static org.mockito.Mockito.times;
import static org.mockito.Mockito.verify;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.concurrent.TimeUnit;
import org.apache.commons.io.IOUtils;
import org.apache.http.HttpResponse;
import org.apache.http.client.methods.HttpGet;
import org.apache.http.impl.client.CloseableHttpClient;
import org.apache.http.impl.client.HttpClientBuilder;
import org.apache.http.impl.conn.PoolingHttpClientConnectionManager;
import org.eclipse.jetty.server.Server;
import org.eclipse.jetty.servlet.ServletHandler;
import org.eclipse.jetty.servlet.ServletHolder;
import org.junit.AfterClass;
import org.junit.Before;
import org.junit.BeforeClass;
import org.junit.Test;
import org.mockito.ArgumentCaptor;
import sun.misc.BASE64Decoder;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.base.composite.BaseCodingDt;
import ca.uhn.fhir.model.base.resource.BaseSecurityEvent;
import ca.uhn.fhir.model.dstu.composite.HumanNameDt;
import ca.uhn.fhir.model.dstu.composite.IdentifierDt;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.resource.SecurityEvent;
import ca.uhn.fhir.model.dstu.resource.SecurityEvent.ObjectElement;
import ca.uhn.fhir.model.dstu.valueset.IdentifierUseEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventObjectLifecycleEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventObjectTypeEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventOutcomeEnum;
import ca.uhn.fhir.model.dstu.valueset.SecurityEventSourceTypeEnum;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.model.primitive.UriDt;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.Read;
import ca.uhn.fhir.rest.annotation.RequiredParam;
import ca.uhn.fhir.rest.annotation.Search;
import ca.uhn.fhir.rest.client.interceptor.UserInfoInterceptor;
import ca.uhn.fhir.rest.param.TokenOrListParam;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.RestfulServer;
import ca.uhn.fhir.rest.server.audit.IResourceAuditor;
import ca.uhn.fhir.rest.server.audit.PatientAuditor;
import ca.uhn.fhir.store.IAuditDataStore;
import ca.uhn.fhir.util.PortUtil;
public class AuditingInterceptorTest {
private static CloseableHttpClient ourClient;
private static int ourPort;
private static Server ourServer;
private static RestfulServer servlet;
private IServerInterceptor myInterceptor;
private class MockDataStore implements IAuditDataStore {
@Override
public void store(BaseSecurityEvent auditEvent) throws Exception {
//do nothing
}
}
@Test
public void testSinglePatient() throws Exception {
AuditingInterceptor interceptor = new AuditingInterceptor("HAPITEST", false);
Map<String, Class<? extends IResourceAuditor<? extends IResource>>> auditors = new HashMap<String, Class<? extends IResourceAuditor<? extends IResource>>>();
auditors.put("Patient", PatientAuditor.class);
interceptor.setAuditableResources(auditors );
servlet.setInterceptors(Collections.singletonList((IServerInterceptor)interceptor));
MockDataStore mockDataStore = mock(MockDataStore.class);
interceptor.setDataStore(mockDataStore);
String requestURL = "http://localhost:" + ourPort + "/Patient/1";
HttpGet httpGet = new HttpGet(requestURL);
httpGet.addHeader(UserInfoInterceptor.HEADER_USER_ID, "hapi-fhir-junit-user");
httpGet.addHeader(UserInfoInterceptor.HEADER_USER_NAME, "HAPI FHIR Junit Test Cases");
httpGet.addHeader(UserInfoInterceptor.HEADER_APPLICATION_NAME, "hapi-fhir-junit");
HttpResponse status = ourClient.execute(httpGet);
IOUtils.closeQuietly(status.getEntity().getContent());
ArgumentCaptor<SecurityEvent> captor = ArgumentCaptor.forClass(SecurityEvent.class);
verify(mockDataStore, times(1)).store(captor.capture());
SecurityEvent auditEvent = captor.getValue();
assertEquals(SecurityEventOutcomeEnum.SUCCESS.getCode(), auditEvent.getEvent().getOutcome().getValue());
assertEquals("HAPI FHIR Junit Test Cases", auditEvent.getParticipantFirstRep().getName().getValue());
assertEquals("hapi-fhir-junit-user", auditEvent.getParticipantFirstRep().getUserId().getValue());
assertEquals("hapi-fhir-junit", auditEvent.getSource().getIdentifier().getValue());
assertEquals("HAPITEST", auditEvent.getSource().getSite().getValue());
assertEquals(SecurityEventSourceTypeEnum.USER_DEVICE.getCode(), auditEvent.getSource().getTypeFirstRep().getCode().getValue());
List<ObjectElement> objects = auditEvent.getObject();
assertEquals(1, objects.size());
ObjectElement object = objects.get(0);
assertEquals("00001", object.getIdentifier().getValue().getValue());
assertEquals("Patient: PatientOne Test", object.getName().getValue());
assertEquals(SecurityEventObjectLifecycleEnum.ACCESS_OR_USE, object.getLifecycle().getValueAsEnum());
assertEquals(SecurityEventObjectTypeEnum.PERSON, object.getType().getValueAsEnum());
assertEquals(requestURL, new String(new BASE64Decoder().decodeBuffer(object.getQuery().getValueAsString())));
}
@Test
public void testBundle() throws Exception {
AuditingInterceptor interceptor = new AuditingInterceptor("HAPITEST", false);
Map<String, Class<? extends IResourceAuditor<? extends IResource>>> auditors = new HashMap<String, Class<? extends IResourceAuditor<? extends IResource>>>();
auditors.put("Patient", PatientAuditor.class);
interceptor.setAuditableResources(auditors );
servlet.setInterceptors(Collections.singletonList((IServerInterceptor)interceptor));
MockDataStore mockDataStore = mock(MockDataStore.class);
interceptor.setDataStore(mockDataStore);
String requestURL = "http://localhost:" + ourPort + "/Patient?_id=1,2";
HttpGet httpGet = new HttpGet(requestURL);
httpGet.addHeader(UserInfoInterceptor.HEADER_USER_ID, "hapi-fhir-junit-user");
httpGet.addHeader(UserInfoInterceptor.HEADER_USER_NAME, "HAPI FHIR Junit Test Cases");
httpGet.addHeader(UserInfoInterceptor.HEADER_APPLICATION_NAME, "hapi-fhir-junit");
HttpResponse status = ourClient.execute(httpGet);
IOUtils.closeQuietly(status.getEntity().getContent());
ArgumentCaptor<SecurityEvent> captor = ArgumentCaptor.forClass(SecurityEvent.class);
verify(mockDataStore, times(1)).store(captor.capture());
SecurityEvent auditEvent = captor.getValue();
assertEquals(SecurityEventOutcomeEnum.SUCCESS.getCode(), auditEvent.getEvent().getOutcome().getValue());
assertEquals("HAPI FHIR Junit Test Cases", auditEvent.getParticipantFirstRep().getName().getValue());
assertEquals("hapi-fhir-junit-user", auditEvent.getParticipantFirstRep().getUserId().getValue());
assertEquals("hapi-fhir-junit", auditEvent.getSource().getIdentifier().getValue());
assertEquals("HAPITEST", auditEvent.getSource().getSite().getValue());
assertEquals(SecurityEventSourceTypeEnum.USER_DEVICE.getCode(), auditEvent.getSource().getTypeFirstRep().getCode().getValue());
List<ObjectElement> objects = auditEvent.getObject();
assertEquals(2, objects.size());
for(ObjectElement object: objects){
if("00001".equals(object.getIdentifier().getValue().getValue())){
assertEquals("Patient: PatientOne Test", object.getName().getValue());
}else if("00002".equals(object.getIdentifier().getValue().getValue())){
assertEquals("Patient: Ms Laura Elizabeth MacDougall Sookraj B.Sc.", object.getName().getValue());
}else{
fail("Unexpected patient identifier being audited: " + object.getIdentifier().getValue().getValue());
}
assertEquals(requestURL, new String(new BASE64Decoder().decodeBuffer(object.getQuery().getValueAsString())));
assertEquals(SecurityEventObjectTypeEnum.PERSON, object.getType().getValueAsEnum());
}
}
@AfterClass
public static void afterClass() throws Exception {
ourServer.stop();
}
@Before
public void before() {
myInterceptor = mock(IServerInterceptor.class);
servlet.setInterceptors(Collections.singletonList(myInterceptor));
}
@BeforeClass
public static void beforeClass() throws Exception {
ourPort = PortUtil.findFreePort();
ourServer = new Server(ourPort);
DummyPatientResourceProvider patientProvider = new DummyPatientResourceProvider();
ServletHandler proxyHandler = new ServletHandler();
servlet = new RestfulServer();
servlet.setResourceProviders(patientProvider);
ServletHolder servletHolder = new ServletHolder(servlet);
proxyHandler.addServletWithMapping(servletHolder, "/*");
ourServer.setHandler(proxyHandler);
ourServer.start();
PoolingHttpClientConnectionManager connectionManager = new PoolingHttpClientConnectionManager(5000, TimeUnit.MILLISECONDS);
HttpClientBuilder builder = HttpClientBuilder.create();
builder.setConnectionManager(connectionManager);
ourClient = builder.build();
}
public static class DummyPatientResourceProvider implements IResourceProvider {
public Map<String, Patient> getIdToPatient() {
Map<String, Patient> idToPatient = new HashMap<String, Patient>();
{
Patient patient = createPatient1();
idToPatient.put("1", patient);
}
{
Patient patient = new Patient();
patient.getIdentifier().add(new IdentifierDt());
patient.getIdentifier().get(0).setUse(IdentifierUseEnum.OFFICIAL);
patient.getIdentifier().get(0).setSystem(new UriDt("urn:hapitest:mrns"));
patient.getIdentifier().get(0).setValue("00002");
HumanNameDt name = new HumanNameDt();
name.addPrefix("Ms");
name.addGiven("Laura");
name.addGiven("Elizabeth");
name.addFamily("MacDougall");
name.addFamily("Sookraj");
name.addSuffix("B.Sc.");
patient.getName().add(name);
patient.getGender().setText("F");
patient.getId().setValue("2");
idToPatient.put("2", patient);
}
return idToPatient;
}
/**
* Retrieve the resource by its identifier
*
* @param theId
* The resource identity
* @return The resource
*/
@Read()
public Patient getResourceById(@IdParam IdDt theId) {
String key = theId.getIdPart();
Patient retVal = getIdToPatient().get(key);
return retVal;
}
/**
* Retrieve the resource by its identifier
*
* @param theId
* The resource identity
* @return The resource
*/
@Search()
public List<Patient> getResourceById(@RequiredParam(name = "_id") TokenOrListParam theIds) {
List<Patient> patients = new ArrayList<Patient>();
for(BaseCodingDt id: theIds.getListAsCodings()){
Patient patient = getIdToPatient().get(id.getCodeElement().getValue());
if (patient != null) {
patients.add(patient);
}
}
return patients;
}
@Override
public Class<Patient> getResourceType() {
return Patient.class;
}
private Patient createPatient1() {
Patient patient = new Patient();
patient.addIdentifier();
patient.getIdentifier().get(0).setUse(IdentifierUseEnum.OFFICIAL);
patient.getIdentifier().get(0).setSystem(new UriDt("urn:hapitest:mrns"));
patient.getIdentifier().get(0).setValue("00001");
patient.addName();
patient.getName().get(0).addFamily("Test");
patient.getName().get(0).addGiven("PatientOne");
patient.getGender().setText("M");
patient.getId().setValue("1");
return patient;
}
}
}

12
hapi-fhir-tutorial/simple-server/pom.xml
View File

@ -14,7 +14,7 @@
<groupId>ca.uhn.hapi.example</groupId>
<artifactId>hapi-fhir-example-simple-server</artifactId>
<version>0.8-SNAPSHOT</version>
<version>0.7</version>
<packaging>war</packaging>
<name>HAPI FHIR Example - Simple Server</name>
@ -35,14 +35,20 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.8-SNAPSHOT</version>
<version>0.7</version>
</dependency>
<!-- At least one "structures" JAR must also be included -->
<!--
Beginning in HAPI 0.8, at least one "structures" JAR must also be included.
For now it is commented out.
-->
<!--
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu</artifactId>
<version>0.8-SNAPSHOT</version>
</dependency>
-->
<!--
HAPI-FHIR uses Logback for logging support. The logback library is included

1
hapi-fhir-tutorial/simple-server/scripts/example3_create.txt Normal file
View File

@ -0,0 +1 @@
curl -H "Content-Type: application/xml+fhir" -X POST -d '<Patient xmlns="http://hl7.org/fhir"><name><family value="Fireman"/><given value="John"/></name></Patient>' "http://localhost:8080/example03/Patient"

32
hapi-fhir-tutorial/simple-server/src/main/java/ca/uhn/fhir/example/ex3/Example03_PatientResourceProvider.java
View File

@ -10,10 +10,13 @@ import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.annotation.Create;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.OptionalParam;
import ca.uhn.fhir.rest.annotation.Read;
import ca.uhn.fhir.rest.annotation.RequiredParam;
import ca.uhn.fhir.rest.annotation.ResourceParam;
import ca.uhn.fhir.rest.annotation.Search;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.param.StringParam;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
@ -24,14 +27,17 @@ import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
public class Example03_PatientResourceProvider implements IResourceProvider {
private Map<Long, Patient> myPatients = new HashMap<Long, Patient>();
private long myNextId = 1;
private Long myNextId = 1L;
/** Constructor */
public Example03_PatientResourceProvider() {
Long id = myNextId++;
Patient pat1 = new Patient();
pat1.setId(new IdDt(id));
pat1.addIdentifier().setSystem("http://acme.com/MRNs").setValue("7000135");
pat1.addName().addFamily("Simpson").addGiven("Homer").addGiven("J");
myPatients.put(myNextId++, pat1);
myPatients.put(id, pat1);
}
/** All Resource Providers must implement this method */
@ -50,10 +56,9 @@ public class Example03_PatientResourceProvider implements IResourceProvider {
return retVal;
}
/** Simple implementation of the "create" method */
/** Create/save a new resource */
@Create
public MethodOutcome create(@ResourceParam Patient thePatient) {
// Give the resource the next sequential ID
long id = myNextId++;
thePatient.setId(new IdDt(id));
@ -63,10 +68,9 @@ public class Example03_PatientResourceProvider implements IResourceProvider {
// Inform the server of the ID for the newly stored resource
return new MethodOutcome(thePatient.getId());
}
/** FHIR "Search" operation for Patient resources */
/** Simple "search" implementation **/
@Search
public List<Patient> search() {
List<Patient> retVal = new ArrayList<Patient>();
@ -74,5 +78,21 @@ public class Example03_PatientResourceProvider implements IResourceProvider {
return retVal;
}
/** A search with a parameter */
@Search
public List<Patient> search(@RequiredParam(name="family") StringParam theParam) {
List<Patient> retVal = new ArrayList<Patient>();
// Loop through the patients looking for matches
for (Patient next : myPatients.values()) {
String familyName = next.getNameFirstRep().getFamilyAsSingleString().toLowerCase();
if (familyName.contains(theParam.getValue().toLowerCase()) == false) {
continue;
}
retVal.add(next);
}
return retVal;
}
}

75
hapi-fhir-tutorial/simple-server/src/main/java/ca/uhn/fhir/example/ex4/Example04_PatientResourceProvider.java Normal file
View File

@ -0,0 +1,75 @@
package ca.uhn.fhir.example.ex4;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.annotation.Create;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.Read;
import ca.uhn.fhir.rest.annotation.ResourceParam;
import ca.uhn.fhir.rest.annotation.Search;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
/**
* This is the most basic resource provider, showing only a single
* read method on a resource provider
*/
public class Example04_PatientResourceProvider implements IResourceProvider {
private Map<Long, Patient> myPatients = new HashMap<Long, Patient>();
private Long myNextId = 1L;
/** Constructor */
public Example04_PatientResourceProvider() {
Patient pat1 = new Patient();
pat1.addIdentifier().setSystem("http://acme.com/MRNs").setValue("7000135");
pat1.addName().addFamily("Simpson").addGiven("Homer").addGiven("J");
myPatients.put(myNextId++, pat1);
}
/** All Resource Providers must implement this method */
@Override
public Class<? extends IResource> getResourceType() {
return Patient.class;
}
/** Simple implementation of the "read" method */
@Read()
public Patient read(@IdParam IdDt theId) {
Patient retVal = myPatients.get(theId.getIdPartAsLong());
if (retVal == null) {
throw new ResourceNotFoundException(theId);
}
return retVal;
}
/** Create/save a new resource */
@Create
public MethodOutcome create(@ResourceParam Patient thePatient) {
// Give the resource the next sequential ID
long id = myNextId++;
thePatient.setId(new IdDt(id));
// Store the resource in memory
myPatients.put(id, thePatient);
// Inform the server of the ID for the newly stored resource
return new MethodOutcome(thePatient.getId());
}
/** Simple "search" implementation **/
@Search
public List<Patient> search() {
List<Patient> retVal = new ArrayList<Patient>();
retVal.addAll(myPatients.values());
return retVal;
}
}

19
hapi-fhir-tutorial/simple-server/src/main/java/ca/uhn/fhir/example/ex4/Example04_SimpleRestfulServer.java Normal file
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@ -0,0 +1,19 @@
package ca.uhn.fhir.example.ex4;
import javax.servlet.ServletException;
import javax.servlet.annotation.WebServlet;
import ca.uhn.fhir.rest.server.RestfulServer;
@WebServlet("/example04/*")
public class Example04_SimpleRestfulServer extends RestfulServer {
private static final long serialVersionUID = 1L;
@Override
protected void initialize() throws ServletException {
setResourceProviders(new Example04_PatientResourceProvider());
}
}

36
hapi-fhir-tutorial/skeleton-project/pom.xml
View File

@ -13,7 +13,7 @@
<groupId>ca.uhn.hapi.example</groupId>
<artifactId>hapi-fhir-example-skeleton-project</artifactId>
<version>0.8-SNAPSHOT</version>
<version>0.7</version>
<packaging>jar</packaging>
<name>HAPI FHIR Example - Skeleton Project</name>
@ -34,14 +34,19 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.8-SNAPSHOT</version>
<version>0.7</version>
</dependency>
<!-- At least one "structures" JAR must also be included -->
<!--
Beginning in HAPI 0.8, at least one "structures" JAR must also be included.
For now it is commented out.
-->
<!--
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu</artifactId>
<version>0.8-SNAPSHOT</version>
</dependency>
-->
<!--
HAPI-FHIR uses Logback for logging support. The logback library is included
@ -55,6 +60,31 @@
<version>1.1.2</version>
</dependency>
<!--
The following two dependencies are required only if you are using
Schematron resource validation. Otherwise, they may be omitted.
-->
<dependency>
<groupId>com.phloc</groupId>
<artifactId>phloc-schematron</artifactId>
<version>2.7.1</version>
</dependency>
<dependency>
<groupId>com.phloc</groupId>
<artifactId>phloc-commons</artifactId>
<version>4.3.3</version>
</dependency>
<!--
The following dependency is only required for narrative generator
support. If you are not using this, it may be removed.
-->
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
<version>2.1.3.RELEASE</version>
</dependency>
</dependencies>
<build>

4
hapi-fhir-tutorial/skeleton-project/src/main/java/ca/uhn/fhir/example/Example07_ClientSearch.java
View File

@ -19,13 +19,13 @@ public class Example07_ClientSearch {
Patient patient = client.read(Patient.class, "4529");
// Print the ID of the newly created resource
System.out.println(patient.getId());
System.out.println("Found ID: " + patient.getId());
// Change the gender and send an update to the server
patient.setGender(AdministrativeGenderCodesEnum.F);
MethodOutcome outcome = client.update().resource(patient).execute();
System.out.println(outcome.getId());
System.out.println("Now have ID: " + outcome.getId());
}
}

34
hapi-fhir-tutorial/skeleton-project/src/main/java/ca/uhn/fhir/example/Example08_ValidateResource.java Normal file
View File

@ -0,0 +1,34 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.resource.Encounter;
import ca.uhn.fhir.model.dstu.resource.OperationOutcome;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.validation.FhirValidator;
import ca.uhn.fhir.validation.ValidationResult;
public class Example08_ValidateResource {
public static void main(String[] args) {
// Create an encounter with an invalid status and no class
Encounter enc = new Encounter();
enc.getStatus().setValueAsString("invalid_status");
// Create a new validator
FhirContext ctx = new FhirContext();
FhirValidator validator = ctx.newValidator();
// Did we succeed?
ValidationResult result = validator.validateWithResult(enc);
System.out.println("Success: " + result.isSuccessful());
// What was the result
OperationOutcome outcome = result.getOperationOutcome();
IParser parser = ctx.newXmlParser().setPrettyPrint(true);
System.out.println(parser.encodeResourceToString(outcome));
}
}

30
hapi-fhir-tutorial/skeleton-project/src/main/java/ca/uhn/fhir/example/Example09_NarrativeGenerator.java Normal file
View File

@ -0,0 +1,30 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.resource.Encounter;
import ca.uhn.fhir.model.dstu.resource.OperationOutcome;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.validation.FhirValidator;
import ca.uhn.fhir.validation.ValidationResult;
public class Example09_NarrativeGenerator {
public static void main(String[] args) {
// Create an encounter with an invalid status and no class
Patient pat = new Patient();
pat.addName().addFamily("Simpson").addGiven("Homer").addGiven("Jay");
pat.addAddress().addLine("342 Evergreen Terrace").addLine("Springfield");
pat.addIdentifier().setLabel("MRN: 12345");
// Create a new context and enable the narrative generator
FhirContext ctx = new FhirContext();
ctx.setNarrativeGenerator(new DefaultThymeleafNarrativeGenerator());
String res = ctx.newJsonParser().setPrettyPrint(true).encodeResourceToString(pat);
System.out.println(res);
}
}

24
hapi-fhir-tutorial/skeleton-project/src/main/java/ca/uhn/fhir/example/Example10_Extensions.java Normal file
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@ -0,0 +1,24 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.parser.IParser;
public class Example10_Extensions {
public static void main(String[] args) {
Patient pat = new Patient();
pat.addName().addFamily("Simpson").addGiven("Homer");
String url = "http://acme.org#eyeColour";
boolean isModifier = false;
pat.addUndeclaredExtension(isModifier, url).setValue(new CodeDt("blue"));;
IParser p = new FhirContext().newXmlParser().setPrettyPrint(true);
String encoded = p.encodeResourceToString(pat);
System.out.println(encoded);
}
}

27
hapi-fhir-tutorial/skeleton-project/src/main/java/ca/uhn/fhir/example/Example11_ExtendedPatient.java Normal file
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@ -0,0 +1,27 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.CodeDt;
@ResourceDef(name="Patient")
public class Example11_ExtendedPatient extends Patient {
@Child(name = "eyeColour")
@Extension(url="http://acme.org/#extpt", definedLocally = false, isModifier = false)
private CodeDt myEyeColour;
public CodeDt getEyeColour() {
if (myEyeColour == null) {
myEyeColour = new CodeDt();
}
return myEyeColour;
}
public void setEyeColour(CodeDt theEyeColour) {
myEyeColour = theEyeColour;
}
}

22
hapi-fhir-tutorial/skeleton-project/src/main/java/ca/uhn/fhir/example/Example11_UseExtensions.java Normal file
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@ -0,0 +1,22 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.parser.IParser;
public class Example11_UseExtensions {
public static void main(String[] args) {
Example11_ExtendedPatient pat = new Example11_ExtendedPatient();
pat.addName().addFamily("Simpson").addGiven("Homer");
pat.setEyeColour(new CodeDt("blue"));
IParser p = new FhirContext().newXmlParser().setPrettyPrint(true);
String encoded = p.encodeResourceToString(pat);
System.out.println(encoded);
}
}

23
pom.xml
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@ -593,6 +593,29 @@
<id>ROOT</id>
<modules>
</modules>
<build>
<plugins>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<version>${maven_assembly_plugin_version}</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
<configuration>
<attach>false</attach>
<descriptors>
<descriptor>${project.basedir}/src/assembly/hapi-fhir-sample-projects.xml</descriptor>
<!-- <descriptor>src/assembly/hapi-jdk14.xml</descriptor> -->
</descriptors>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>SIGN_ARTIFACTS</id>

51
src/assembly/hapi-fhir-sample-projects.xml Normal file
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@ -0,0 +1,51 @@
<?xml version="1.0" encoding="ISO-8859-1"?>
<assembly xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.2 http://maven.apache.org/xsd/assembly-1.1.2.xsd">
<id>sample-projects</id>
<formats>
<format>zip</format>
<format>tar.bz2</format>
</formats>
<includeBaseDirectory>false</includeBaseDirectory>
<fileSets>
<fileSet>
<directory>${project.basedir}/hapi-fhir-tutorial</directory>
<outputDirectory>/</outputDirectory>
<includes>
<include>simple-server/**</include>
<include>skeleton-project/**</include>
</includes>
<excludes>
<exclude>*/target/**</exclude>
<exclude>*/.classpath</exclude>
<exclude>*/.project</exclude>
<exclude>*/.settings/**</exclude>
</excludes>
</fileSet>
<!--
<fileSet>
<directory>${project.build.directory}</directory>
<outputDirectory>/lib</outputDirectory>
<includes>
<include>*.jar</include>
</includes>
</fileSet>
-->
</fileSets>
<!--
<dependencySets>
<dependencySet>
<outputDirectory>/lib/dependency</outputDirectory>
<useProjectArtifact>true</useProjectArtifact>
<unpack>false</unpack>
<scope>runtime</scope>
</dependencySet>
</dependencySets>
-->
</assembly>

9
src/changes/changes.xml
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@ -156,6 +156,15 @@
were applied to other client instances for the same client interface as well. (Issue
did not affect generic/fluent clients)
</action>
<action type="fix" issue="57">
DateDt, DateTimeDt and types InstantDt types now do not throw an exception
if they are used to parse a value with the wrong level of precision for
the given type but do throw an exception if the wrong level of precision
is passed into their constructors.<![CDATA[<br/><br/>]]>
This means that HAPI FHIR can now successfully parse resources from external
sources that have the wrong level of precision, but will generate a validation
error if the resource is validated. Thanks to Alexander Kley for the suggestion!
</action>
<action type="fix">
Encoding a Binary resource without a content type set should not result in a NullPointerException. Thanks
to Alexander Kley for reporting!