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hapi-fhir
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Build fixes

This commit is contained in:
jamesagnew 2019-04-01 18:55:55 -04:00
parent 81de6cca32
commit 835b89f449
4 changed files with 14 additions and 12 deletions
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4
hapi-deployable-pom/pom.xml
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@ -139,6 +139,10 @@
<groupId>org.apache.derby</groupId> <groupId>org.apache.derby</groupId>
<artifactId>derbyclient</artifactId> <artifactId>derbyclient</artifactId>
</dependency> </dependency>
<dependency>
<groupId>org.checkerframework</groupId>
<artifactId>checker-compat-qual</artifactId>
</dependency>
</ignoredDependencies> </ignoredDependencies>
<ignoredResourcePatterns> <ignoredResourcePatterns>
<ignoredResourcePattern>changelog.txt</ignoredResourcePattern> <ignoredResourcePattern>changelog.txt</ignoredResourcePattern>

4
hapi-fhir-base/src/main/java/ca/uhn/fhir/util/PortUtil.java
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@ -9,9 +9,9 @@ package ca.uhn.fhir.util;
* Licensed under the Apache License, Version 2.0 (the "License"); * Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License. * you may not use this file except in compliance with the License.
* You may obtain a copy of the License at * You may obtain a copy of the License at
* *
* http://www.apache.org/licenses/LICENSE-2.0 * http://www.apache.org/licenses/LICENSE-2.0
* *
* Unless required by applicable law or agreed to in writing, software * Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS, * distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

17
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchNoFtTest.java
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@ -1,7 +1,6 @@
package ca.uhn.fhir.jpa.dao.r4; package ca.uhn.fhir.jpa.dao.r4;
import ca.uhn.fhir.context.RuntimeResourceDefinition; import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.jpa.util.CircularQueueCaptureQueriesListener;
import ca.uhn.fhir.jpa.dao.DaoConfig; import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.model.entity.*; import ca.uhn.fhir.jpa.model.entity.*;
import ca.uhn.fhir.jpa.searchparam.MatchUrlService; import ca.uhn.fhir.jpa.searchparam.MatchUrlService;
@ -19,7 +18,6 @@ import ca.uhn.fhir.rest.server.exceptions.MethodNotAllowedException;
import com.google.common.collect.Lists; import com.google.common.collect.Lists;
import org.apache.commons.io.IOUtils; import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.StringUtils;
import org.apache.http.NameValuePair;
import org.hl7.fhir.instance.model.api.IAnyResource; import org.hl7.fhir.instance.model.api.IAnyResource;
import org.hl7.fhir.instance.model.api.IBaseResource; import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType; import org.hl7.fhir.instance.model.api.IIdType;
@ -163,8 +161,8 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
conditionA.getAsserter().setReference(patientId); conditionA.getAsserter().setReference(patientId);
myConditionDao.create(conditionA); myConditionDao.create(conditionA);
String criteria = "_has:Condition:subject:code=http://snomed.info/sct|55822003,http://snomed.info/sct|55822004&"+ String criteria = "_has:Condition:subject:code=http://snomed.info/sct|55822003,http://snomed.info/sct|55822004&" +
"_has:Condition:asserter:code=http://snomed.info/sct|55822003,http://snomed.info/sct|55822005"; "_has:Condition:asserter:code=http://snomed.info/sct|55822003,http://snomed.info/sct|55822005";
SearchParameterMap map = myMatchUrlService.translateMatchUrl(criteria, myFhirCtx.getResourceDefinition(Patient.class)); SearchParameterMap map = myMatchUrlService.translateMatchUrl(criteria, myFhirCtx.getResourceDefinition(Patient.class));
map.setLoadSynchronous(true); map.setLoadSynchronous(true);
@ -190,7 +188,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
conditionA.getAsserter().setReference(patientId); conditionA.getAsserter().setReference(patientId);
myConditionDao.create(conditionA); myConditionDao.create(conditionA);
String criteria = "_has:Condition:subject:code=http://snomed.info/sct|55822003,http://snomed.info/sct|55822005&"+ String criteria = "_has:Condition:subject:code=http://snomed.info/sct|55822003,http://snomed.info/sct|55822005&" +
"_has:Condition:asserter:code=http://snomed.info/sct|55822003,http://snomed.info/sct|55822004"; "_has:Condition:asserter:code=http://snomed.info/sct|55822003,http://snomed.info/sct|55822004";
SearchParameterMap map = myMatchUrlService.translateMatchUrl(criteria, myFhirCtx.getResourceDefinition(Patient.class)); SearchParameterMap map = myMatchUrlService.translateMatchUrl(criteria, myFhirCtx.getResourceDefinition(Patient.class));
@ -1346,7 +1344,9 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
IBundleProvider found = myPatientDao.search(map); IBundleProvider found = myPatientDao.search(map);
Set<String> dates = new HashSet<>(); Set<String> dates = new HashSet<>();
for (int i = 0; i < 9; i++) { for (int i = 0; i < 9; i++) {
Patient nextResource = (Patient) found.getResources(i, i + 1).get(0); List<IBaseResource> resources = found.getResources(i, i + 1);
assertThat("Failed to load range " + i + " - " + (i + 1), resources, hasSize(1));
Patient nextResource = (Patient) resources.get(0);
dates.add(nextResource.getBirthDateElement().getValueAsString()); dates.add(nextResource.getBirthDateElement().getValueAsString());
} }
@ -2177,7 +2177,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
myCaptureQueriesListener.clear(); myCaptureQueriesListener.clear();
result = toList(myObservationDao.search(new SearchParameterMap().setLoadSynchronous(true).add(Observation.SP_SUBJECT, new ReferenceParam("testSearchResourceLinkWithTextLogicalId99")))); result = toList(myObservationDao.search(new SearchParameterMap().setLoadSynchronous(true).add(Observation.SP_SUBJECT, new ReferenceParam("testSearchResourceLinkWithTextLogicalId99"))));
myCaptureQueriesListener.logSelectQueriesForCurrentThread(); myCaptureQueriesListener.logSelectQueriesForCurrentThread();
assertEquals(result.toString(),0, result.size()); assertEquals(result.toString(), 0, result.size());
// And with a numeric ID that doesn't exist // And with a numeric ID that doesn't exist
result = toList(myObservationDao.search(new SearchParameterMap().setLoadSynchronous(true).add(Observation.SP_SUBJECT, new ReferenceParam("999999999999999")))); result = toList(myObservationDao.search(new SearchParameterMap().setLoadSynchronous(true).add(Observation.SP_SUBJECT, new ReferenceParam("999999999999999"))));
@ -2570,7 +2570,6 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
} }
@Test @Test
public void testSearchTokenParam() { public void testSearchTokenParam() {
Patient patient = new Patient(); Patient patient = new Patient();
@ -2704,7 +2703,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
map.setLoadSynchronous(true); map.setLoadSynchronous(true);
map.add(Patient.SP_FAMILY, new StringAndListParam() map.add(Patient.SP_FAMILY, new StringAndListParam()
.addAnd(new StringParam("STRINGA")) .addAnd(new StringParam("STRINGA"))
.addAnd(new StringParam( "STRINGB")) .addAnd(new StringParam("STRINGB"))
); );
myCaptureQueriesListener.clear(); myCaptureQueriesListener.clear();
IBundleProvider retrieved = myPatientDao.search(map); IBundleProvider retrieved = myPatientDao.search(map);

1
pom.xml
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@ -2266,7 +2266,6 @@
<module>hapi-fhir-jaxrsserver-example</module> <module>hapi-fhir-jaxrsserver-example</module>
<module>hapi-fhir-jpaserver-base</module> <module>hapi-fhir-jpaserver-base</module>
<module>hapi-fhir-jpaserver-elasticsearch</module> <module>hapi-fhir-jpaserver-elasticsearch</module>
<module>hapi-fhir-jpaserver-example</module>
<module>hapi-fhir-jpaserver-migrate</module> <module>hapi-fhir-jpaserver-migrate</module>
<module>restful-server-example</module> <module>restful-server-example</module>
<module>restful-server-example-test</module> <module>restful-server-example-test</module>