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Make LOINC Top2000* files optional in terminology loader.

This commit is contained in:
ianmarshall 2021-02-11 09:12:08 -05:00
parent 7413584bff
commit 88d820bf38
1 changed files with 0 additions and 25 deletions
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25
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/term/TerminologyLoaderSvcLoincTest.java
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@ -22,7 +22,6 @@ import org.hl7.fhir.r4.model.ConceptMap;
import org.hl7.fhir.r4.model.Enumerations; import org.hl7.fhir.r4.model.Enumerations;
import org.hl7.fhir.r4.model.ValueSet; import org.hl7.fhir.r4.model.ValueSet;
import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test; import org.junit.jupiter.api.Test;
import org.mockito.ArgumentCaptor; import org.mockito.ArgumentCaptor;
import org.mockito.Captor; import org.mockito.Captor;
@ -37,7 +36,6 @@ import static ca.uhn.fhir.jpa.term.loinc.LoincUploadPropertiesEnum.*;
import static org.hamcrest.MatcherAssert.assertThat; import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.contains; import static org.hamcrest.Matchers.contains;
import static org.hamcrest.Matchers.containsString; import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.empty;
import static org.junit.jupiter.api.Assertions.assertEquals; import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertNull; import static org.junit.jupiter.api.Assertions.assertNull;
import static org.junit.jupiter.api.Assertions.assertTrue; import static org.junit.jupiter.api.Assertions.assertTrue;
@ -591,29 +589,6 @@ public class TerminologyLoaderSvcLoincTest extends BaseLoaderTest {
} }
@Test
@Disabled
public void testLoadLoincMandatoryFilesPlusTop2000() throws IOException {
addLoincMandatoryFilesToZip(myFiles);
// Actually do the load
mySvc.loadLoinc(myFiles.getFiles(), mySrd);
verify(myTermCodeSystemStorageSvc, times(1)).storeNewCodeSystemVersion(mySystemCaptor.capture(), myCsvCaptor.capture(), any(RequestDetails.class), myValueSetsCaptor.capture(), myConceptMapCaptor.capture());
Map<String, TermConcept> concepts = extractConcepts();
Map<String, ValueSet> valueSets = extractValueSets();
Map<String, ConceptMap> conceptMaps = extractConceptMaps();
// Normal LOINC code
TermConcept code = concepts.get("10013-1");
assertEquals("10013-1", code.getCode());
// No valuesets or conceptmaps get created
assertThat(valueSets.keySet(), empty());
assertThat(conceptMaps.keySet(), empty());
}
@Test @Test
public void testLoadLoincMissingMandatoryFiles() throws IOException { public void testLoadLoincMissingMandatoryFiles() throws IOException {
myFiles.addFileZip("/loinc/", LOINC_UPLOAD_PROPERTIES_FILE.getCode()); myFiles.addFileZip("/loinc/", LOINC_UPLOAD_PROPERTIES_FILE.getCode());