Merge remote-tracking branch 'remotes/origin/master' into add-pid-to-created-resource
This commit is contained in:
commit
8c5fe36591
|
@ -1,7 +1,9 @@
|
|||
package example;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.util.List;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.hl7.fhir.dstu3.model.Parameters;
|
||||
|
||||
import ca.uhn.fhir.model.dstu2.composite.CodingDt;
|
||||
|
@ -18,11 +20,33 @@ import ca.uhn.fhir.rest.param.DateRangeParam;
|
|||
import ca.uhn.fhir.rest.param.StringParam;
|
||||
import ca.uhn.fhir.rest.param.TokenAndListParam;
|
||||
import ca.uhn.fhir.rest.param.TokenParam;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import javax.servlet.http.HttpServletRequest;
|
||||
import javax.servlet.http.HttpServletResponse;
|
||||
|
||||
|
||||
public class ServerOperations {
|
||||
private static final Logger ourLog = LoggerFactory.getLogger(ServerOperations.class);
|
||||
|
||||
//START SNIPPET: searchParamBasic
|
||||
|
||||
//START SNIPPET: manualInputAndOutput
|
||||
@Operation(name="$manualInputAndOutput", manualResponse=true, manualRequest=true)
|
||||
public void manualInputAndOutput(HttpServletRequest theServletRequest, HttpServletResponse theServletResponse) throws IOException {
|
||||
String contentType = theServletRequest.getContentType();
|
||||
byte[] bytes = IOUtils.toByteArray(theServletRequest.getInputStream());
|
||||
|
||||
ourLog.info("Received call with content type {} and {} bytes", contentType, bytes.length);
|
||||
|
||||
theServletResponse.setContentType(contentType);
|
||||
theServletResponse.getOutputStream().write(bytes);
|
||||
theServletResponse.getOutputStream().close();
|
||||
}
|
||||
//END SNIPPET: manualInputAndOutput
|
||||
|
||||
|
||||
//START SNIPPET: searchParamBasic
|
||||
@Operation(name="$find-matches", idempotent=true)
|
||||
public Parameters findMatchesBasic(
|
||||
@OperationParam(name="date") DateParam theDate,
|
||||
|
|
|
@ -24,6 +24,8 @@ import com.google.common.collect.ArrayListMultimap;
|
|||
import com.google.common.collect.ListMultimap;
|
||||
import com.google.common.collect.Multimaps;
|
||||
import org.apache.commons.lang3.Validate;
|
||||
import org.apache.commons.lang3.builder.ToStringBuilder;
|
||||
import org.apache.commons.lang3.builder.ToStringStyle;
|
||||
|
||||
import javax.annotation.Nonnull;
|
||||
import java.util.Collection;
|
||||
|
@ -132,4 +134,11 @@ public class HookParams {
|
|||
}
|
||||
return this;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return new ToStringBuilder(this, ToStringStyle.SIMPLE_STYLE)
|
||||
.append("params", myParams)
|
||||
.toString();
|
||||
}
|
||||
}
|
||||
|
|
|
@ -25,6 +25,7 @@ import java.io.IOException;
|
|||
import java.io.ObjectInput;
|
||||
import java.io.ObjectOutput;
|
||||
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.apache.commons.lang3.builder.EqualsBuilder;
|
||||
import org.apache.commons.lang3.builder.HashCodeBuilder;
|
||||
|
||||
|
@ -131,4 +132,10 @@ public abstract class BasePrimitive<T> extends BaseIdentifiableElement implement
|
|||
public void writeExternal(ObjectOutput theOut) throws IOException {
|
||||
theOut.writeObject(getValueAsString());
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean hasValue() {
|
||||
return !StringUtils.isBlank(getValueAsString());
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -1,6 +1,6 @@
|
|||
package ca.uhn.fhir.model.api;
|
||||
|
||||
/*
|
||||
/*-
|
||||
* #%L
|
||||
* HAPI FHIR - Core Library
|
||||
* %%
|
||||
|
@ -20,6 +20,13 @@ package ca.uhn.fhir.model.api;
|
|||
* #L%
|
||||
*/
|
||||
|
||||
public interface IPrimitiveDatatypeWithPrecision<T, P> extends IPrimitiveDatatype<T> {
|
||||
import org.hl7.fhir.instance.model.api.IPrimitiveType;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.Writer;
|
||||
|
||||
public interface IStreamingDatatype<T> extends IPrimitiveType<T> {
|
||||
|
||||
void writeAsText(Writer theWriter) throws IOException;
|
||||
|
||||
}
|
|
@ -87,4 +87,37 @@ public @interface Operation {
|
|||
*/
|
||||
BundleTypeEnum bundleType() default BundleTypeEnum.COLLECTION;
|
||||
|
||||
/**
|
||||
* If this is set to <code>true</code> (default is <code>false</code> and this is almost
|
||||
* always the right choice), the framework will not attempt to generate a response to
|
||||
* this method.
|
||||
* <p>
|
||||
* This is useful if you want to include an {@link javax.servlet.http.HttpServletResponse}
|
||||
* in your method parameters and create a response yourself directly from your
|
||||
* <code>@Operation</code> method.
|
||||
* </p>
|
||||
* <p>
|
||||
* Note that this will mean that interceptor methods will not get fired for the
|
||||
* response, so there are security implications to using this flag.
|
||||
* </p>
|
||||
*/
|
||||
boolean manualResponse() default false;
|
||||
|
||||
/**
|
||||
* If this is set to <code>true</code> (default is <code>false</code> and this is almost
|
||||
* always the right choice), the framework will not attempt to parse the request body,
|
||||
* but will instead delegate it to the <code>@Operation</code> method.
|
||||
* <p>
|
||||
* This is useful if you want to include an {@link javax.servlet.http.HttpServletRequest}
|
||||
* in your method parameters and parse the request yourself.
|
||||
* </p>
|
||||
*/
|
||||
boolean manualRequest() default false;
|
||||
|
||||
/**
|
||||
* If this is set to <code>true</code>, this method will be a <b>global operation</b>
|
||||
* meaning that it applies to all resource types
|
||||
*/
|
||||
boolean global() default false;
|
||||
|
||||
}
|
||||
|
|
|
@ -211,6 +211,8 @@ public class Constants {
|
|||
public static final String PARAMETER_CASCADE_DELETE = "_cascade";
|
||||
public static final String HEADER_CASCADE = "X-Cascade";
|
||||
public static final String CASCADE_DELETE = "delete";
|
||||
public static final int MAX_RESOURCE_NAME_LENGTH = 100;
|
||||
public static final String CACHE_CONTROL_PRIVATE = "private";
|
||||
|
||||
static {
|
||||
CHARSET_UTF8 = Charset.forName(CHARSET_NAME_UTF8);
|
||||
|
|
|
@ -0,0 +1,98 @@
|
|||
package ca.uhn.fhir.util;
|
||||
|
||||
/*-
|
||||
* #%L
|
||||
* HAPI FHIR - Core Library
|
||||
* %%
|
||||
* Copyright (C) 2014 - 2019 University Health Network
|
||||
* %%
|
||||
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||
* you may not use this file except in compliance with the License.
|
||||
* You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
* #L%
|
||||
*/
|
||||
|
||||
import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
|
||||
import ca.uhn.fhir.context.BaseRuntimeElementCompositeDefinition;
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import org.hl7.fhir.instance.model.api.IBase;
|
||||
import org.hl7.fhir.instance.model.api.ICompositeType;
|
||||
import org.hl7.fhir.instance.model.api.IPrimitiveType;
|
||||
|
||||
import java.util.List;
|
||||
|
||||
public class AttachmentUtil {
|
||||
|
||||
/**
|
||||
* Fetches the base64Binary value of Attachment.data, creating it if it does not
|
||||
* already exist.
|
||||
*/
|
||||
@SuppressWarnings("unchecked")
|
||||
public static IPrimitiveType<byte[]> getOrCreateData(FhirContext theContext, ICompositeType theAttachment) {
|
||||
BaseRuntimeChildDefinition entryChild = getChild(theContext, theAttachment, "data");
|
||||
List<IBase> entries = entryChild.getAccessor().getValues(theAttachment);
|
||||
return entries
|
||||
.stream()
|
||||
.map(t -> (IPrimitiveType<byte[]>) t)
|
||||
.findFirst()
|
||||
.orElseGet(() -> {
|
||||
IPrimitiveType<byte[]> binary = newPrimitive(theContext, "base64Binary", null);
|
||||
entryChild.getMutator().setValue(theAttachment, binary);
|
||||
return binary;
|
||||
});
|
||||
}
|
||||
|
||||
@SuppressWarnings("unchecked")
|
||||
public static IPrimitiveType<String> getOrCreateContentType(FhirContext theContext, ICompositeType theAttachment) {
|
||||
BaseRuntimeChildDefinition entryChild = getChild(theContext, theAttachment, "contentType");
|
||||
List<IBase> entries = entryChild.getAccessor().getValues(theAttachment);
|
||||
return entries
|
||||
.stream()
|
||||
.map(t -> (IPrimitiveType<String>) t)
|
||||
.findFirst()
|
||||
.orElseGet(() -> {
|
||||
IPrimitiveType<String> string = newPrimitive(theContext, "string", null);
|
||||
entryChild.getMutator().setValue(theAttachment, string);
|
||||
return string;
|
||||
});
|
||||
}
|
||||
|
||||
public static void setContentType(FhirContext theContext, ICompositeType theAttachment, String theContentType) {
|
||||
BaseRuntimeChildDefinition entryChild = getChild(theContext, theAttachment, "contentType");
|
||||
entryChild.getMutator().setValue(theAttachment, newPrimitive(theContext, "code", theContentType));
|
||||
}
|
||||
|
||||
public static void setData(FhirContext theContext, ICompositeType theAttachment, byte[] theBytes) {
|
||||
BaseRuntimeChildDefinition entryChild = getChild(theContext, theAttachment, "data");
|
||||
entryChild.getMutator().setValue(theAttachment, newPrimitive(theContext, "base64Binary", theBytes));
|
||||
}
|
||||
|
||||
public static void setSize(FhirContext theContext, ICompositeType theAttachment, Integer theLength) {
|
||||
BaseRuntimeChildDefinition entryChild = getChild(theContext, theAttachment, "size");
|
||||
if (theLength == null) {
|
||||
entryChild.getMutator().setValue(theAttachment, null);
|
||||
} else {
|
||||
entryChild.getMutator().setValue(theAttachment, newPrimitive(theContext, "unsignedInt", theLength));
|
||||
}
|
||||
}
|
||||
|
||||
@SuppressWarnings("unchecked")
|
||||
private static <T> IPrimitiveType<T> newPrimitive(FhirContext theContext, String theType, T theValue) {
|
||||
IPrimitiveType<T> primitive = (IPrimitiveType<T>) theContext.getElementDefinition(theType).newInstance();
|
||||
primitive.setValue(theValue);
|
||||
return primitive;
|
||||
}
|
||||
|
||||
private static BaseRuntimeChildDefinition getChild(FhirContext theContext, ICompositeType theAttachment, String theName) {
|
||||
BaseRuntimeElementCompositeDefinition<?> def = (BaseRuntimeElementCompositeDefinition<?>) theContext.getElementDefinition(theAttachment.getClass());
|
||||
return def.getChildByName(theName);
|
||||
}
|
||||
}
|
|
@ -20,253 +20,148 @@ package ca.uhn.fhir.util;
|
|||
* #L%
|
||||
*/
|
||||
|
||||
/*
|
||||
* ====================================================================
|
||||
* Licensed to the Apache Software Foundation (ASF) under one
|
||||
* or more contributor license agreements. See the NOTICE file
|
||||
* distributed with this work for additional information
|
||||
* regarding copyright ownership. The ASF licenses this file
|
||||
* to you under the Apache License, Version 2.0 (the
|
||||
* "License"); you may not use this file except in compliance
|
||||
* with the License. You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing,
|
||||
* software distributed under the License is distributed on an
|
||||
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
|
||||
* KIND, either express or implied. See the License for the
|
||||
* specific language governing permissions and limitations
|
||||
* under the License.
|
||||
* ====================================================================
|
||||
*
|
||||
* This software consists of voluntary contributions made by many
|
||||
* individuals on behalf of the Apache Software Foundation. For more
|
||||
* information on the Apache Software Foundation, please see
|
||||
* <http://www.apache.org/>.
|
||||
*
|
||||
*/
|
||||
|
||||
import java.lang.ref.SoftReference;
|
||||
import java.text.ParsePosition;
|
||||
import java.text.SimpleDateFormat;
|
||||
import java.util.Calendar;
|
||||
import java.util.Date;
|
||||
import java.util.HashMap;
|
||||
import java.util.Locale;
|
||||
import java.util.Map;
|
||||
import java.util.TimeZone;
|
||||
import java.util.*;
|
||||
|
||||
/**
|
||||
* A utility class for parsing and formatting HTTP dates as used in cookies and
|
||||
* other headers. This class handles dates as defined by RFC 2616 section
|
||||
* 3.3.1 as well as some other common non-standard formats.
|
||||
* <p>
|
||||
* This class is basically intended to be a high-performance workaround
|
||||
* for the fact that Java SimpleDateFormat is kind of expensive to
|
||||
* create and yet isn't thread safe.
|
||||
* </p>
|
||||
* <p>
|
||||
* This class was adapted from the class with the same name from the Jetty
|
||||
* project, licensed under the terms of the Apache Software License 2.0.
|
||||
* </p>
|
||||
*/
|
||||
public final class DateUtils {
|
||||
|
||||
/**
|
||||
* Date format pattern used to parse HTTP date headers in RFC 1123 format.
|
||||
*/
|
||||
public static final String PATTERN_RFC1123 = "EEE, dd MMM yyyy HH:mm:ss zzz";
|
||||
public static final TimeZone GMT = TimeZone.getTimeZone("GMT");
|
||||
/**
|
||||
* Date format pattern used to parse HTTP date headers in RFC 1123 format.
|
||||
*/
|
||||
private static final String PATTERN_RFC1123 = "EEE, dd MMM yyyy HH:mm:ss zzz";
|
||||
/**
|
||||
* Date format pattern used to parse HTTP date headers in RFC 1036 format.
|
||||
*/
|
||||
private static final String PATTERN_RFC1036 = "EEE, dd-MMM-yy HH:mm:ss zzz";
|
||||
/**
|
||||
* Date format pattern used to parse HTTP date headers in ANSI C
|
||||
* {@code asctime()} format.
|
||||
*/
|
||||
private static final String PATTERN_ASCTIME = "EEE MMM d HH:mm:ss yyyy";
|
||||
private static final String[] DEFAULT_PATTERNS = new String[]{
|
||||
PATTERN_RFC1123,
|
||||
PATTERN_RFC1036,
|
||||
PATTERN_ASCTIME
|
||||
};
|
||||
private static final Date DEFAULT_TWO_DIGIT_YEAR_START;
|
||||
|
||||
/**
|
||||
* Date format pattern used to parse HTTP date headers in RFC 1036 format.
|
||||
*/
|
||||
public static final String PATTERN_RFC1036 = "EEE, dd-MMM-yy HH:mm:ss zzz";
|
||||
static {
|
||||
final Calendar calendar = Calendar.getInstance();
|
||||
calendar.setTimeZone(GMT);
|
||||
calendar.set(2000, Calendar.JANUARY, 1, 0, 0, 0);
|
||||
calendar.set(Calendar.MILLISECOND, 0);
|
||||
DEFAULT_TWO_DIGIT_YEAR_START = calendar.getTime();
|
||||
}
|
||||
|
||||
/**
|
||||
* Date format pattern used to parse HTTP date headers in ANSI C
|
||||
* {@code asctime()} format.
|
||||
*/
|
||||
public static final String PATTERN_ASCTIME = "EEE MMM d HH:mm:ss yyyy";
|
||||
/**
|
||||
* This class should not be instantiated.
|
||||
*/
|
||||
private DateUtils() {
|
||||
}
|
||||
|
||||
private static final String[] DEFAULT_PATTERNS = new String[] {
|
||||
PATTERN_RFC1123,
|
||||
PATTERN_RFC1036,
|
||||
PATTERN_ASCTIME
|
||||
};
|
||||
/**
|
||||
* A factory for {@link SimpleDateFormat}s. The instances are stored in a
|
||||
* threadlocal way because SimpleDateFormat is not thread safe as noted in
|
||||
* {@link SimpleDateFormat its javadoc}.
|
||||
*/
|
||||
final static class DateFormatHolder {
|
||||
|
||||
private static final Date DEFAULT_TWO_DIGIT_YEAR_START;
|
||||
private static final ThreadLocal<SoftReference<Map<String, SimpleDateFormat>>> THREADLOCAL_FORMATS = ThreadLocal.withInitial(() -> new SoftReference<>(new HashMap<>()));
|
||||
|
||||
public static final TimeZone GMT = TimeZone.getTimeZone("GMT");
|
||||
/**
|
||||
* creates a {@link SimpleDateFormat} for the requested format string.
|
||||
*
|
||||
* @param pattern a non-{@code null} format String according to
|
||||
* {@link SimpleDateFormat}. The format is not checked against
|
||||
* {@code null} since all paths go through
|
||||
* {@link DateUtils}.
|
||||
* @return the requested format. This simple DateFormat should not be used
|
||||
* to {@link SimpleDateFormat#applyPattern(String) apply} to a
|
||||
* different pattern.
|
||||
*/
|
||||
static SimpleDateFormat formatFor(final String pattern) {
|
||||
final SoftReference<Map<String, SimpleDateFormat>> ref = THREADLOCAL_FORMATS.get();
|
||||
Map<String, SimpleDateFormat> formats = ref.get();
|
||||
if (formats == null) {
|
||||
formats = new HashMap<>();
|
||||
THREADLOCAL_FORMATS.set(
|
||||
new SoftReference<>(formats));
|
||||
}
|
||||
|
||||
static {
|
||||
final Calendar calendar = Calendar.getInstance();
|
||||
calendar.setTimeZone(GMT);
|
||||
calendar.set(2000, Calendar.JANUARY, 1, 0, 0, 0);
|
||||
calendar.set(Calendar.MILLISECOND, 0);
|
||||
DEFAULT_TWO_DIGIT_YEAR_START = calendar.getTime();
|
||||
}
|
||||
SimpleDateFormat format = formats.get(pattern);
|
||||
if (format == null) {
|
||||
format = new SimpleDateFormat(pattern, Locale.US);
|
||||
format.setTimeZone(TimeZone.getTimeZone("GMT"));
|
||||
formats.put(pattern, format);
|
||||
}
|
||||
|
||||
/**
|
||||
* Parses a date value. The formats used for parsing the date value are retrieved from
|
||||
* the default http params.
|
||||
*
|
||||
* @param dateValue the date value to parse
|
||||
*
|
||||
* @return the parsed date or null if input could not be parsed
|
||||
*/
|
||||
public static Date parseDate(final String dateValue) {
|
||||
return parseDate(dateValue, null, null);
|
||||
}
|
||||
return format;
|
||||
}
|
||||
|
||||
/**
|
||||
* Parses the date value using the given date formats.
|
||||
*
|
||||
* @param dateValue the date value to parse
|
||||
* @param dateFormats the date formats to use
|
||||
*
|
||||
* @return the parsed date or null if input could not be parsed
|
||||
*/
|
||||
public static Date parseDate(final String dateValue, final String[] dateFormats) {
|
||||
return parseDate(dateValue, dateFormats, null);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Parses the date value using the given date formats.
|
||||
*
|
||||
* @param dateValue the date value to parse
|
||||
* @param dateFormats the date formats to use
|
||||
* @param startDate During parsing, two digit years will be placed in the range
|
||||
* {@code startDate} to {@code startDate + 100 years}. This value may
|
||||
* be {@code null}. When {@code null} is given as a parameter, year
|
||||
* {@code 2000} will be used.
|
||||
*
|
||||
* @return the parsed date or null if input could not be parsed
|
||||
*/
|
||||
public static Date parseDate(
|
||||
final String dateValue,
|
||||
final String[] dateFormats,
|
||||
final Date startDate) {
|
||||
notNull(dateValue, "Date value");
|
||||
final String[] localDateFormats = dateFormats != null ? dateFormats : DEFAULT_PATTERNS;
|
||||
final Date localStartDate = startDate != null ? startDate : DEFAULT_TWO_DIGIT_YEAR_START;
|
||||
String v = dateValue;
|
||||
// trim single quotes around date if present
|
||||
// see issue #5279
|
||||
if (v.length() > 1 && v.startsWith("'") && v.endsWith("'")) {
|
||||
v = v.substring (1, v.length() - 1);
|
||||
}
|
||||
/**
|
||||
* Parses a date value. The formats used for parsing the date value are retrieved from
|
||||
* the default http params.
|
||||
*
|
||||
* @param theDateValue the date value to parse
|
||||
* @return the parsed date or null if input could not be parsed
|
||||
*/
|
||||
public static Date parseDate(final String theDateValue) {
|
||||
notNull(theDateValue, "Date value");
|
||||
String v = theDateValue;
|
||||
if (v.length() > 1 && v.startsWith("'") && v.endsWith("'")) {
|
||||
v = v.substring(1, v.length() - 1);
|
||||
}
|
||||
|
||||
for (final String dateFormat : localDateFormats) {
|
||||
final SimpleDateFormat dateParser = DateFormatHolder.formatFor(dateFormat);
|
||||
dateParser.set2DigitYearStart(localStartDate);
|
||||
final ParsePosition pos = new ParsePosition(0);
|
||||
final Date result = dateParser.parse(v, pos);
|
||||
if (pos.getIndex() != 0) {
|
||||
return result;
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
for (final String dateFormat : DEFAULT_PATTERNS) {
|
||||
final SimpleDateFormat dateParser = DateFormatHolder.formatFor(dateFormat);
|
||||
dateParser.set2DigitYearStart(DEFAULT_TWO_DIGIT_YEAR_START);
|
||||
final ParsePosition pos = new ParsePosition(0);
|
||||
final Date result = dateParser.parse(v, pos);
|
||||
if (pos.getIndex() != 0) {
|
||||
return result;
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats the given date according to the RFC 1123 pattern.
|
||||
*
|
||||
* @param date The date to format.
|
||||
* @return An RFC 1123 formatted date string.
|
||||
*
|
||||
* @see #PATTERN_RFC1123
|
||||
*/
|
||||
public static String formatDate(final Date date) {
|
||||
return formatDate(date, PATTERN_RFC1123);
|
||||
}
|
||||
/**
|
||||
* Formats the given date according to the RFC 1123 pattern.
|
||||
*
|
||||
* @param date The date to format.
|
||||
* @return An RFC 1123 formatted date string.
|
||||
* @see #PATTERN_RFC1123
|
||||
*/
|
||||
public static String formatDate(final Date date) {
|
||||
notNull(date, "Date");
|
||||
notNull(PATTERN_RFC1123, "Pattern");
|
||||
final SimpleDateFormat formatter = DateFormatHolder.formatFor(PATTERN_RFC1123);
|
||||
return formatter.format(date);
|
||||
}
|
||||
|
||||
/**
|
||||
* Formats the given date according to the specified pattern. The pattern
|
||||
* must conform to that used by the {@link SimpleDateFormat simple date
|
||||
* format} class.
|
||||
*
|
||||
* @param date The date to format.
|
||||
* @param pattern The pattern to use for formatting the date.
|
||||
* @return A formatted date string.
|
||||
*
|
||||
* @throws IllegalArgumentException If the given date pattern is invalid.
|
||||
*
|
||||
* @see SimpleDateFormat
|
||||
*/
|
||||
public static String formatDate(final Date date, final String pattern) {
|
||||
notNull(date, "Date");
|
||||
notNull(pattern, "Pattern");
|
||||
final SimpleDateFormat formatter = DateFormatHolder.formatFor(pattern);
|
||||
return formatter.format(date);
|
||||
}
|
||||
|
||||
|
||||
public static <T> T notNull(final T argument, final String name) {
|
||||
if (argument == null) {
|
||||
throw new IllegalArgumentException(name + " may not be null");
|
||||
}
|
||||
return argument;
|
||||
}
|
||||
|
||||
/**
|
||||
* Clears thread-local variable containing {@link java.text.DateFormat} cache.
|
||||
*
|
||||
* @since 4.3
|
||||
*/
|
||||
public static void clearThreadLocal() {
|
||||
DateFormatHolder.clearThreadLocal();
|
||||
}
|
||||
|
||||
/** This class should not be instantiated. */
|
||||
private DateUtils() {
|
||||
}
|
||||
|
||||
/**
|
||||
* A factory for {@link SimpleDateFormat}s. The instances are stored in a
|
||||
* threadlocal way because SimpleDateFormat is not threadsafe as noted in
|
||||
* {@link SimpleDateFormat its javadoc}.
|
||||
*
|
||||
*/
|
||||
final static class DateFormatHolder {
|
||||
|
||||
private static final ThreadLocal<SoftReference<Map<String, SimpleDateFormat>>>
|
||||
THREADLOCAL_FORMATS = new ThreadLocal<SoftReference<Map<String, SimpleDateFormat>>>() {
|
||||
|
||||
@Override
|
||||
protected SoftReference<Map<String, SimpleDateFormat>> initialValue() {
|
||||
return new SoftReference<Map<String, SimpleDateFormat>>(
|
||||
new HashMap<String, SimpleDateFormat>());
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
/**
|
||||
* creates a {@link SimpleDateFormat} for the requested format string.
|
||||
*
|
||||
* @param pattern
|
||||
* a non-{@code null} format String according to
|
||||
* {@link SimpleDateFormat}. The format is not checked against
|
||||
* {@code null} since all paths go through
|
||||
* {@link DateUtils}.
|
||||
* @return the requested format. This simple dateformat should not be used
|
||||
* to {@link SimpleDateFormat#applyPattern(String) apply} to a
|
||||
* different pattern.
|
||||
*/
|
||||
public static SimpleDateFormat formatFor(final String pattern) {
|
||||
final SoftReference<Map<String, SimpleDateFormat>> ref = THREADLOCAL_FORMATS.get();
|
||||
Map<String, SimpleDateFormat> formats = ref.get();
|
||||
if (formats == null) {
|
||||
formats = new HashMap<String, SimpleDateFormat>();
|
||||
THREADLOCAL_FORMATS.set(
|
||||
new SoftReference<Map<String, SimpleDateFormat>>(formats));
|
||||
}
|
||||
|
||||
SimpleDateFormat format = formats.get(pattern);
|
||||
if (format == null) {
|
||||
format = new SimpleDateFormat(pattern, Locale.US);
|
||||
format.setTimeZone(TimeZone.getTimeZone("GMT"));
|
||||
formats.put(pattern, format);
|
||||
}
|
||||
|
||||
return format;
|
||||
}
|
||||
|
||||
public static void clearThreadLocal() {
|
||||
THREADLOCAL_FORMATS.remove();
|
||||
}
|
||||
|
||||
}
|
||||
public static <T> T notNull(final T argument, final String name) {
|
||||
if (argument == null) {
|
||||
throw new IllegalArgumentException(name + " may not be null");
|
||||
}
|
||||
return argument;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -8,6 +8,7 @@ import ca.uhn.fhir.rest.api.Constants;
|
|||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import com.google.common.escape.Escaper;
|
||||
import com.google.common.net.PercentEscaper;
|
||||
import org.hl7.fhir.instance.model.api.IPrimitiveType;
|
||||
|
||||
import java.io.UnsupportedEncodingException;
|
||||
import java.net.MalformedURLException;
|
||||
|
@ -44,6 +45,44 @@ public class UrlUtil {
|
|||
private static final String URL_FORM_PARAMETER_OTHER_SAFE_CHARS = "-_.*";
|
||||
private static final Escaper PARAMETER_ESCAPER = new PercentEscaper(URL_FORM_PARAMETER_OTHER_SAFE_CHARS, false);
|
||||
|
||||
public static class UrlParts {
|
||||
private String myParams;
|
||||
private String myResourceId;
|
||||
private String myResourceType;
|
||||
private String myVersionId;
|
||||
|
||||
public String getParams() {
|
||||
return myParams;
|
||||
}
|
||||
|
||||
public void setParams(String theParams) {
|
||||
myParams = theParams;
|
||||
}
|
||||
|
||||
public String getResourceId() {
|
||||
return myResourceId;
|
||||
}
|
||||
|
||||
public void setResourceId(String theResourceId) {
|
||||
myResourceId = theResourceId;
|
||||
}
|
||||
|
||||
public String getResourceType() {
|
||||
return myResourceType;
|
||||
}
|
||||
|
||||
public void setResourceType(String theResourceType) {
|
||||
myResourceType = theResourceType;
|
||||
}
|
||||
|
||||
public String getVersionId() {
|
||||
return myVersionId;
|
||||
}
|
||||
|
||||
public void setVersionId(String theVersionId) {
|
||||
myVersionId = theVersionId;
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Resolve a relative URL - THIS METHOD WILL NOT FAIL but will log a warning and return theEndpoint if the input is invalid.
|
||||
|
@ -115,7 +154,6 @@ public class UrlUtil {
|
|||
return PARAMETER_ESCAPER.escape(theUnescaped);
|
||||
}
|
||||
|
||||
|
||||
public static boolean isAbsolute(String theValue) {
|
||||
String value = theValue.toLowerCase();
|
||||
return value.startsWith("http://") || value.startsWith("https://");
|
||||
|
@ -284,7 +322,7 @@ public class UrlUtil {
|
|||
}
|
||||
if (nextChar == '?') {
|
||||
if (url.length() > idx + 1) {
|
||||
retVal.setParams(url.substring(idx + 1, url.length()));
|
||||
retVal.setParams(url.substring(idx + 1));
|
||||
}
|
||||
break;
|
||||
}
|
||||
|
@ -296,6 +334,18 @@ public class UrlUtil {
|
|||
|
||||
}
|
||||
|
||||
/**
|
||||
* This method specifically HTML-encodes the " and
|
||||
* < characters in order to prevent injection attacks
|
||||
*/
|
||||
public static String sanitizeUrlPart(IPrimitiveType<?> theString) {
|
||||
String retVal = null;
|
||||
if (theString != null) {
|
||||
retVal = sanitizeUrlPart(theString.getValueAsString());
|
||||
}
|
||||
return retVal;
|
||||
}
|
||||
|
||||
/**
|
||||
* This method specifically HTML-encodes the " and
|
||||
* < characters in order to prevent injection attacks
|
||||
|
@ -352,6 +402,8 @@ public class UrlUtil {
|
|||
char nextChar = theString.charAt(i);
|
||||
if (nextChar == '%' || nextChar == '+') {
|
||||
try {
|
||||
// Yes it would be nice to not use a string "UTF-8" but the equivalent
|
||||
// method that takes Charset is JDK10+ only... sigh....
|
||||
return URLDecoder.decode(theString, "UTF-8");
|
||||
} catch (UnsupportedEncodingException e) {
|
||||
throw new Error("UTF-8 not supported, this shouldn't happen", e);
|
||||
|
@ -361,43 +413,4 @@ public class UrlUtil {
|
|||
return theString;
|
||||
}
|
||||
|
||||
public static class UrlParts {
|
||||
private String myParams;
|
||||
private String myResourceId;
|
||||
private String myResourceType;
|
||||
private String myVersionId;
|
||||
|
||||
public String getParams() {
|
||||
return myParams;
|
||||
}
|
||||
|
||||
public void setParams(String theParams) {
|
||||
myParams = theParams;
|
||||
}
|
||||
|
||||
public String getResourceId() {
|
||||
return myResourceId;
|
||||
}
|
||||
|
||||
public void setResourceId(String theResourceId) {
|
||||
myResourceId = theResourceId;
|
||||
}
|
||||
|
||||
public String getResourceType() {
|
||||
return myResourceType;
|
||||
}
|
||||
|
||||
public void setResourceType(String theResourceType) {
|
||||
myResourceType = theResourceType;
|
||||
}
|
||||
|
||||
public String getVersionId() {
|
||||
return myVersionId;
|
||||
}
|
||||
|
||||
public void setVersionId(String theVersionId) {
|
||||
myVersionId = theVersionId;
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -30,6 +30,8 @@ public interface IPrimitiveType<T> extends IBaseDatatype {
|
|||
|
||||
T getValue();
|
||||
|
||||
boolean hasValue();
|
||||
|
||||
IPrimitiveType<T> setValue(T theValue) throws IllegalArgumentException;
|
||||
|
||||
}
|
||||
|
|
|
@ -114,6 +114,8 @@ ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor.successMsg=Cascaded delet
|
|||
ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor.noParam=Note that cascading deletes are not active for this request. You can enable cascading deletes by using the "_cascade=true" URL parameter.
|
||||
|
||||
ca.uhn.fhir.jpa.provider.BaseJpaProvider.cantCombintAtAndSince=Unable to combine _at and _since parameters for history operation
|
||||
ca.uhn.fhir.jpa.provider.BinaryAccessProvider.noAttachmentDataPresent=The resource with ID {0} has no data at path: {1}
|
||||
ca.uhn.fhir.jpa.provider.BinaryAccessProvider.unknownBlobId=Can not find the requested binary content. It may have been deleted.
|
||||
|
||||
ca.uhn.fhir.jpa.term.BaseHapiTerminologySvcImpl.cannotCreateDuplicateCodeSystemUrl=Can not create multiple CodeSystem resources with CodeSystem.url "{0}", already have one with resource ID: {1}
|
||||
ca.uhn.fhir.jpa.term.BaseHapiTerminologySvcImpl.cannotCreateDuplicateConceptMapUrl=Can not create multiple ConceptMap resources with ConceptMap.url "{0}", already have one with resource ID: {1}
|
||||
|
|
|
@ -0,0 +1,66 @@
|
|||
package ca.uhn.fhir.jpa.binstore;
|
||||
|
||||
/*-
|
||||
* #%L
|
||||
* HAPI FHIR JPA Server
|
||||
* %%
|
||||
* Copyright (C) 2014 - 2019 University Health Network
|
||||
* %%
|
||||
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||
* you may not use this file except in compliance with the License.
|
||||
* You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
* #L%
|
||||
*/
|
||||
|
||||
import com.google.common.hash.HashFunction;
|
||||
import com.google.common.hash.Hashing;
|
||||
import com.google.common.hash.HashingInputStream;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
|
||||
import javax.annotation.Nonnull;
|
||||
import java.io.InputStream;
|
||||
import java.security.SecureRandom;
|
||||
|
||||
abstract class BaseBinaryStorageSvcImpl implements IBinaryStorageSvc {
|
||||
|
||||
private final SecureRandom myRandom;
|
||||
private final String CHARS = "abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789";
|
||||
private final int ID_LENGTH = 100;
|
||||
private int myMinSize;
|
||||
|
||||
BaseBinaryStorageSvcImpl() {
|
||||
myRandom = new SecureRandom();
|
||||
}
|
||||
|
||||
public void setMinSize(int theMinSize) {
|
||||
myMinSize = theMinSize;
|
||||
}
|
||||
|
||||
String newRandomId() {
|
||||
StringBuilder b = new StringBuilder();
|
||||
for (int i = 0; i < ID_LENGTH; i++) {
|
||||
int nextInt = Math.abs(myRandom.nextInt());
|
||||
b.append(CHARS.charAt(nextInt % CHARS.length()));
|
||||
}
|
||||
return b.toString();
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean shouldStoreBlob(long theSize, IIdType theResourceId, String theContentType) {
|
||||
return theSize >= myMinSize;
|
||||
}
|
||||
|
||||
@Nonnull
|
||||
static HashingInputStream createHashingInputStream(InputStream theInputStream) {
|
||||
HashFunction hash = Hashing.sha256();
|
||||
return new HashingInputStream(hash, theInputStream);
|
||||
}
|
||||
}
|
|
@ -0,0 +1,166 @@
|
|||
package ca.uhn.fhir.jpa.binstore;
|
||||
|
||||
/*-
|
||||
* #%L
|
||||
* HAPI FHIR JPA Server
|
||||
* %%
|
||||
* Copyright (C) 2014 - 2019 University Health Network
|
||||
* %%
|
||||
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||
* you may not use this file except in compliance with the License.
|
||||
* You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
* #L%
|
||||
*/
|
||||
|
||||
import ca.uhn.fhir.context.ConfigurationException;
|
||||
import com.fasterxml.jackson.annotation.JsonInclude;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import com.fasterxml.jackson.databind.SerializationFeature;
|
||||
import com.google.common.base.Charsets;
|
||||
import com.google.common.hash.HashingInputStream;
|
||||
import com.google.common.io.CountingInputStream;
|
||||
import org.apache.commons.io.FileUtils;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.commons.lang3.Validate;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import javax.annotation.Nonnull;
|
||||
import javax.annotation.PostConstruct;
|
||||
import java.io.*;
|
||||
import java.util.Date;
|
||||
|
||||
public class FilesystemBinaryStorageSvcImpl extends BaseBinaryStorageSvcImpl {
|
||||
|
||||
private static final Logger ourLog = LoggerFactory.getLogger(FilesystemBinaryStorageSvcImpl.class);
|
||||
private final File myBasePath;
|
||||
private final ObjectMapper myJsonSerializer;
|
||||
|
||||
public FilesystemBinaryStorageSvcImpl(String theBasePath) {
|
||||
Validate.notBlank(theBasePath);
|
||||
|
||||
myBasePath = new File(theBasePath);
|
||||
|
||||
myJsonSerializer = new ObjectMapper();
|
||||
myJsonSerializer.setSerializationInclusion(JsonInclude.Include.NON_NULL);
|
||||
myJsonSerializer.enable(SerializationFeature.INDENT_OUTPUT);
|
||||
}
|
||||
|
||||
@PostConstruct
|
||||
public void start() {
|
||||
ourLog.info("Starting binary storage service with base path: {}", myBasePath);
|
||||
|
||||
mkdir(myBasePath);
|
||||
}
|
||||
|
||||
@Override
|
||||
public StoredDetails storeBlob(IIdType theResourceId, String theContentType, InputStream theInputStream) throws IOException {
|
||||
String id = newRandomId();
|
||||
File storagePath = getStoragePath(id, true);
|
||||
|
||||
// Write binary file
|
||||
File storageFilename = getStorageFilename(storagePath, theResourceId, id);
|
||||
ourLog.info("Writing to file: {}", storageFilename.getAbsolutePath());
|
||||
CountingInputStream countingInputStream = new CountingInputStream(theInputStream);
|
||||
HashingInputStream hashingInputStream = createHashingInputStream(countingInputStream);
|
||||
try (FileOutputStream outputStream = new FileOutputStream(storageFilename)) {
|
||||
IOUtils.copy(hashingInputStream, outputStream);
|
||||
}
|
||||
|
||||
// Write descriptor file
|
||||
long count = countingInputStream.getCount();
|
||||
StoredDetails details = new StoredDetails(id, count, theContentType, hashingInputStream, new Date());
|
||||
File descriptorFilename = getDescriptorFilename(storagePath, theResourceId, id);
|
||||
ourLog.info("Writing to file: {}", descriptorFilename.getAbsolutePath());
|
||||
try (FileWriter writer = new FileWriter(descriptorFilename)) {
|
||||
myJsonSerializer.writeValue(writer, details);
|
||||
}
|
||||
|
||||
ourLog.info("Stored binary blob with {} bytes and ContentType {} for resource {}", count, theContentType, theResourceId);
|
||||
|
||||
return details;
|
||||
}
|
||||
|
||||
@Override
|
||||
public StoredDetails fetchBlobDetails(IIdType theResourceId, String theBlobId) throws IOException {
|
||||
StoredDetails retVal = null;
|
||||
|
||||
File storagePath = getStoragePath(theBlobId, false);
|
||||
if (storagePath != null) {
|
||||
File file = getDescriptorFilename(storagePath, theResourceId, theBlobId);
|
||||
if (file.exists()) {
|
||||
try (InputStream inputStream = new FileInputStream(file)) {
|
||||
try (Reader reader = new InputStreamReader(inputStream, Charsets.UTF_8)) {
|
||||
retVal = myJsonSerializer.readValue(reader, StoredDetails.class);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return retVal;
|
||||
}
|
||||
|
||||
@Override
|
||||
public void writeBlob(IIdType theResourceId, String theBlobId, OutputStream theOutputStream) throws IOException {
|
||||
File storagePath = getStoragePath(theBlobId, false);
|
||||
if (storagePath != null) {
|
||||
File file = getStorageFilename(storagePath, theResourceId, theBlobId);
|
||||
if (file.exists()) {
|
||||
try (InputStream inputStream = new FileInputStream(file)) {
|
||||
IOUtils.copy(inputStream, theOutputStream);
|
||||
theOutputStream.close();
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@Nonnull
|
||||
private File getDescriptorFilename(File theStoragePath, IIdType theResourceId, String theId) {
|
||||
return getStorageFilename(theStoragePath, theResourceId, theId, ".json");
|
||||
}
|
||||
|
||||
@Nonnull
|
||||
private File getStorageFilename(File theStoragePath, IIdType theResourceId, String theId) {
|
||||
return getStorageFilename(theStoragePath, theResourceId, theId, ".bin");
|
||||
}
|
||||
|
||||
private File getStorageFilename(File theStoragePath, IIdType theResourceId, String theId, String theExtension) {
|
||||
Validate.notBlank(theResourceId.getResourceType());
|
||||
Validate.notBlank(theResourceId.getIdPart());
|
||||
|
||||
String filename = theResourceId.getResourceType() + "_" + theResourceId.getIdPart() + "_" + theId;
|
||||
return new File(theStoragePath, filename + theExtension);
|
||||
}
|
||||
|
||||
private File getStoragePath(String theId, boolean theCreate) {
|
||||
File path = myBasePath;
|
||||
for (int i = 0; i < 10; i++) {
|
||||
path = new File(path, theId.substring(i, i+1));
|
||||
if (!path.exists()) {
|
||||
if (theCreate) {
|
||||
mkdir(path);
|
||||
} else {
|
||||
return null;
|
||||
}
|
||||
}
|
||||
}
|
||||
return path;
|
||||
}
|
||||
|
||||
private void mkdir(File theBasePath) {
|
||||
try {
|
||||
FileUtils.forceMkdir(theBasePath);
|
||||
} catch (IOException e) {
|
||||
throw new ConfigurationException("Unable to create path " + myBasePath + ": " + e.toString());
|
||||
}
|
||||
}
|
||||
}
|
|
@ -0,0 +1,137 @@
|
|||
package ca.uhn.fhir.jpa.binstore;
|
||||
|
||||
/*-
|
||||
* #%L
|
||||
* HAPI FHIR JPA Server
|
||||
* %%
|
||||
* Copyright (C) 2014 - 2019 University Health Network
|
||||
* %%
|
||||
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||
* you may not use this file except in compliance with the License.
|
||||
* You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
* #L%
|
||||
*/
|
||||
|
||||
import ca.uhn.fhir.jpa.util.JsonDateDeserializer;
|
||||
import ca.uhn.fhir.jpa.util.JsonDateSerializer;
|
||||
import com.fasterxml.jackson.annotation.JsonAutoDetect;
|
||||
import com.fasterxml.jackson.annotation.JsonInclude;
|
||||
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||
import com.fasterxml.jackson.databind.annotation.JsonDeserialize;
|
||||
import com.fasterxml.jackson.databind.annotation.JsonSerialize;
|
||||
import com.google.common.hash.HashingInputStream;
|
||||
import org.apache.commons.lang3.builder.ToStringBuilder;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
|
||||
import javax.annotation.Nonnull;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.OutputStream;
|
||||
import java.util.Date;
|
||||
|
||||
public interface IBinaryStorageSvc {
|
||||
|
||||
/**
|
||||
* Give the storage service the ability to veto items from storage
|
||||
*
|
||||
* @param theSize How large is the item
|
||||
* @param theResourceId What is the resource ID it will be associated with
|
||||
* @param theContentType What is the content type
|
||||
* @return <code>true</code> if the storage service should store the item
|
||||
*/
|
||||
boolean shouldStoreBlob(long theSize, IIdType theResourceId, String theContentType);
|
||||
|
||||
/**
|
||||
* Store a new binary blob
|
||||
*
|
||||
* @param theResourceId The resource ID that owns this blob. Note that it should not be possible to retrieve a blob without both the resource ID and the blob ID being correct.
|
||||
* @param theContentType The content type to associate with this blob
|
||||
* @param theInputStream An InputStream to read from. This method should close the stream when it has been fully consumed.
|
||||
* @return Returns details about the stored data
|
||||
*/
|
||||
StoredDetails storeBlob(IIdType theResourceId, String theContentType, InputStream theInputStream) throws IOException;
|
||||
|
||||
StoredDetails fetchBlobDetails(IIdType theResourceId, String theBlobId) throws IOException;
|
||||
|
||||
void writeBlob(IIdType theResourceId, String theBlobId, OutputStream theOutputStream) throws IOException;
|
||||
|
||||
|
||||
@JsonInclude(JsonInclude.Include.NON_NULL)
|
||||
@JsonAutoDetect(creatorVisibility = JsonAutoDetect.Visibility.NONE, fieldVisibility = JsonAutoDetect.Visibility.NONE, getterVisibility = JsonAutoDetect.Visibility.NONE, isGetterVisibility = JsonAutoDetect.Visibility.NONE, setterVisibility = JsonAutoDetect.Visibility.NONE)
|
||||
class StoredDetails {
|
||||
|
||||
@JsonProperty("blobId")
|
||||
private String myBlobId;
|
||||
@JsonProperty("bytes")
|
||||
private long myBytes;
|
||||
@JsonProperty("contentType")
|
||||
private String myContentType;
|
||||
@JsonProperty("hash")
|
||||
private String myHash;
|
||||
@JsonProperty("published")
|
||||
@JsonSerialize(using = JsonDateSerializer.class)
|
||||
@JsonDeserialize(using = JsonDateDeserializer.class)
|
||||
private Date myPublished;
|
||||
|
||||
/**
|
||||
* Constructor
|
||||
*/
|
||||
@SuppressWarnings("unused")
|
||||
public StoredDetails() {
|
||||
super();
|
||||
}
|
||||
|
||||
/**
|
||||
* Constructor
|
||||
*/
|
||||
public StoredDetails(@Nonnull String theBlobId, long theBytes, @Nonnull String theContentType, HashingInputStream theIs, Date thePublished) {
|
||||
myBlobId = theBlobId;
|
||||
myBytes = theBytes;
|
||||
myContentType = theContentType;
|
||||
myHash = theIs.hash().toString();
|
||||
myPublished = thePublished;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return new ToStringBuilder(this)
|
||||
.append("blobId", myBlobId)
|
||||
.append("bytes", myBytes)
|
||||
.append("contentType", myContentType)
|
||||
.append("hash", myHash)
|
||||
.append("published", myPublished)
|
||||
.toString();
|
||||
}
|
||||
|
||||
public String getHash() {
|
||||
return myHash;
|
||||
}
|
||||
|
||||
public Date getPublished() {
|
||||
return myPublished;
|
||||
}
|
||||
|
||||
@Nonnull
|
||||
public String getContentType() {
|
||||
return myContentType;
|
||||
}
|
||||
|
||||
@Nonnull
|
||||
public String getBlobId() {
|
||||
return myBlobId;
|
||||
}
|
||||
|
||||
public long getBytes() {
|
||||
return myBytes;
|
||||
}
|
||||
|
||||
}
|
||||
}
|
|
@ -0,0 +1,82 @@
|
|||
package ca.uhn.fhir.jpa.binstore;
|
||||
|
||||
/*-
|
||||
* #%L
|
||||
* HAPI FHIR JPA Server
|
||||
* %%
|
||||
* Copyright (C) 2014 - 2019 University Health Network
|
||||
* %%
|
||||
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||
* you may not use this file except in compliance with the License.
|
||||
* You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
* #L%
|
||||
*/
|
||||
|
||||
import com.google.common.hash.HashingInputStream;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.OutputStream;
|
||||
import java.util.Date;
|
||||
import java.util.concurrent.ConcurrentHashMap;
|
||||
|
||||
/**
|
||||
* Purely in-memory implementation of binary storage service. This is really
|
||||
* only appropriate for testing, since it doesn't persist anywhere and is
|
||||
* limited by the amount of available RAM.
|
||||
*/
|
||||
public class MemoryBinaryStorageSvcImpl extends BaseBinaryStorageSvcImpl implements IBinaryStorageSvc {
|
||||
|
||||
private ConcurrentHashMap<String, byte[]> myDataMap = new ConcurrentHashMap<>();
|
||||
private ConcurrentHashMap<String, StoredDetails> myDetailsMap = new ConcurrentHashMap<>();
|
||||
|
||||
/**
|
||||
* Constructor
|
||||
*/
|
||||
public MemoryBinaryStorageSvcImpl() {
|
||||
super();
|
||||
}
|
||||
|
||||
@Override
|
||||
public StoredDetails storeBlob(IIdType theResourceId, String theContentType, InputStream theInputStream) throws IOException {
|
||||
String id = newRandomId();
|
||||
String key = toKey(theResourceId, id);
|
||||
|
||||
HashingInputStream is = createHashingInputStream(theInputStream);
|
||||
|
||||
byte[] bytes = IOUtils.toByteArray(is);
|
||||
theInputStream.close();
|
||||
myDataMap.put(key, bytes);
|
||||
StoredDetails storedDetails = new StoredDetails(id, bytes.length, theContentType, is, new Date());
|
||||
myDetailsMap.put(key, storedDetails);
|
||||
return storedDetails;
|
||||
}
|
||||
|
||||
@Override
|
||||
public StoredDetails fetchBlobDetails(IIdType theResourceId, String theBlobId) {
|
||||
String key = toKey(theResourceId, theBlobId);
|
||||
return myDetailsMap.get(key);
|
||||
}
|
||||
|
||||
@Override
|
||||
public void writeBlob(IIdType theResourceId, String theBlobId, OutputStream theOutputStream) throws IOException {
|
||||
String key = toKey(theResourceId, theBlobId);
|
||||
byte[] bytes = myDataMap.get(key);
|
||||
theOutputStream.write(bytes);
|
||||
}
|
||||
|
||||
private String toKey(IIdType theResourceId, String theBlobId) {
|
||||
return theBlobId + '-' + theResourceId.toUnqualifiedVersionless().getValue();
|
||||
}
|
||||
|
||||
}
|
|
@ -0,0 +1,31 @@
|
|||
package ca.uhn.fhir.jpa.binstore;
|
||||
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.OutputStream;
|
||||
import java.io.UnsupportedEncodingException;
|
||||
|
||||
public class NullBinaryStorageSvcImpl implements IBinaryStorageSvc {
|
||||
|
||||
@Override
|
||||
public boolean shouldStoreBlob(long theSize, IIdType theResourceId, String theContentType) {
|
||||
return false;
|
||||
}
|
||||
|
||||
@Override
|
||||
public StoredDetails storeBlob(IIdType theResourceId, String theContentType, InputStream theInputStream) {
|
||||
throw new UnsupportedOperationException();
|
||||
}
|
||||
|
||||
@Override
|
||||
public StoredDetails fetchBlobDetails(IIdType theResourceId, String theBlobId) {
|
||||
throw new UnsupportedOperationException();
|
||||
}
|
||||
|
||||
@Override
|
||||
public void writeBlob(IIdType theResourceId, String theBlobId, OutputStream theOutputStream) {
|
||||
throw new UnsupportedOperationException();
|
||||
}
|
||||
}
|
|
@ -6,6 +6,7 @@ import ca.uhn.fhir.interceptor.api.IInterceptorService;
|
|||
import ca.uhn.fhir.interceptor.executor.InterceptorService;
|
||||
import ca.uhn.fhir.jpa.dao.DaoRegistry;
|
||||
import ca.uhn.fhir.jpa.interceptor.JpaConsentContextServices;
|
||||
import ca.uhn.fhir.jpa.provider.BinaryAccessProvider;
|
||||
import ca.uhn.fhir.jpa.provider.SubscriptionTriggeringProvider;
|
||||
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
|
||||
import ca.uhn.fhir.jpa.search.IStaleSearchDeletingSvc;
|
||||
|
@ -120,6 +121,12 @@ public abstract class BaseConfig implements SchedulingConfigurer {
|
|||
return new SubscriptionTriggeringProvider();
|
||||
}
|
||||
|
||||
@Bean(name = "myAttachmentBinaryAccessProvider")
|
||||
@Lazy
|
||||
public BinaryAccessProvider AttachmentBinaryAccessProvider() {
|
||||
return new BinaryAccessProvider();
|
||||
}
|
||||
|
||||
@Bean
|
||||
public TaskScheduler taskScheduler() {
|
||||
ConcurrentTaskScheduler retVal = new ConcurrentTaskScheduler();
|
||||
|
|
|
@ -25,7 +25,7 @@ import ca.uhn.fhir.jpa.searchparam.registry.ISearchParamRegistry;
|
|||
import ca.uhn.fhir.jpa.sp.ISearchParamPresenceSvc;
|
||||
import ca.uhn.fhir.jpa.term.IHapiTerminologySvc;
|
||||
import ca.uhn.fhir.jpa.util.AddRemoveCount;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.util.JpaInterceptorBroadcaster;
|
||||
import ca.uhn.fhir.model.api.IResource;
|
||||
import ca.uhn.fhir.model.api.ResourceMetadataKeyEnum;
|
||||
|
|
|
@ -561,7 +561,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IBaseResource> extends B
|
|||
return myExpungeService.expunge(getResourceName(), entity.getResourceId(), entity.getVersion(), theExpungeOptions, theRequest);
|
||||
}
|
||||
|
||||
return myExpungeService.expunge(getResourceName(), entity.getResourceId(), null, theExpungeOptions ,theRequest);
|
||||
return myExpungeService.expunge(getResourceName(), entity.getResourceId(), null, theExpungeOptions, theRequest);
|
||||
}
|
||||
|
||||
@Override
|
||||
|
@ -851,6 +851,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IBaseResource> extends B
|
|||
}
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@Override
|
||||
|
|
|
@ -20,6 +20,7 @@ package ca.uhn.fhir.jpa.entity;
|
|||
* #L%
|
||||
*/
|
||||
|
||||
import ca.uhn.fhir.rest.api.Constants;
|
||||
import com.google.common.annotations.VisibleForTesting;
|
||||
import org.apache.commons.lang3.builder.ToStringBuilder;
|
||||
import org.apache.commons.lang3.builder.ToStringStyle;
|
||||
|
@ -36,7 +37,7 @@ public class ResourceReindexJobEntity implements Serializable {
|
|||
@GeneratedValue(strategy = GenerationType.AUTO, generator = "SEQ_RES_REINDEX_JOB")
|
||||
@Column(name = "PID")
|
||||
private Long myId;
|
||||
@Column(name = "RES_TYPE", nullable = true)
|
||||
@Column(name = "RES_TYPE", nullable = true, length = Constants.MAX_RESOURCE_NAME_LENGTH)
|
||||
private String myResourceType;
|
||||
/**
|
||||
* Inclusive
|
||||
|
|
|
@ -21,6 +21,7 @@ package ca.uhn.fhir.jpa.entity;
|
|||
*/
|
||||
|
||||
import ca.uhn.fhir.context.FhirVersionEnum;
|
||||
import ca.uhn.fhir.jpa.model.entity.ForcedId;
|
||||
import ca.uhn.fhir.jpa.model.entity.IBaseResourceEntity;
|
||||
import ca.uhn.fhir.jpa.model.entity.ResourceEncodingEnum;
|
||||
import ca.uhn.fhir.model.primitive.IdDt;
|
||||
|
@ -47,7 +48,7 @@ import java.util.Date;
|
|||
", h.res_updated as res_updated " +
|
||||
", h.res_text as res_text " +
|
||||
", h.res_encoding as res_encoding " +
|
||||
", f.forced_id as forced_pid " +
|
||||
", f.forced_id as FORCED_PID " +
|
||||
"FROM HFJ_RES_VER h "
|
||||
+ " LEFT OUTER JOIN HFJ_FORCED_ID f ON f.resource_pid = h.res_id "
|
||||
+ " INNER JOIN HFJ_RESOURCE r ON r.res_id = h.res_id and r.res_ver = h.res_ver")
|
||||
|
@ -63,7 +64,7 @@ public class ResourceSearchView implements IBaseResourceEntity, Serializable {
|
|||
@Column(name = "RES_ID")
|
||||
private Long myResourceId;
|
||||
|
||||
@Column(name = "RES_TYPE")
|
||||
@Column(name = "RES_TYPE", length = Constants.MAX_RESOURCE_NAME_LENGTH)
|
||||
private String myResourceType;
|
||||
|
||||
@Column(name = "RES_VERSION")
|
||||
|
@ -96,7 +97,7 @@ public class ResourceSearchView implements IBaseResourceEntity, Serializable {
|
|||
@Enumerated(EnumType.STRING)
|
||||
private ResourceEncodingEnum myEncoding;
|
||||
|
||||
@Column(name = "forced_pid")
|
||||
@Column(name = "FORCED_PID", length= ForcedId.MAX_FORCED_ID_LENGTH)
|
||||
private String myForcedPid;
|
||||
|
||||
public ResourceSearchView() {
|
||||
|
|
|
@ -44,7 +44,7 @@ import static org.apache.commons.lang3.StringUtils.length;
|
|||
@Entity
|
||||
@Indexed(interceptor = DeferConceptIndexingInterceptor.class)
|
||||
@Table(name = "TRM_CONCEPT", uniqueConstraints = {
|
||||
@UniqueConstraint(name = "IDX_CONCEPT_CS_CODE", columnNames = {"CODESYSTEM_PID", "CODE"})
|
||||
@UniqueConstraint(name = "IDX_CONCEPT_CS_CODE", columnNames = {"CODESYSTEM_PID", "CODEVAL"})
|
||||
}, indexes = {
|
||||
@Index(name = "IDX_CONCEPT_INDEXSTATUS", columnList = "INDEX_STATUS"),
|
||||
@Index(name = "IDX_CONCEPT_UPDATED", columnList = "CONCEPT_UPDATED")
|
||||
|
@ -60,7 +60,7 @@ public class TermConcept implements Serializable {
|
|||
@OneToMany(fetch = FetchType.LAZY, mappedBy = "myParent", cascade = {})
|
||||
private Collection<TermConceptParentChildLink> myChildren;
|
||||
|
||||
@Column(name = "CODE", nullable = false, length = MAX_CODE_LENGTH)
|
||||
@Column(name = "CODEVAL", nullable = false, length = MAX_CODE_LENGTH)
|
||||
@Fields({@Field(name = "myCode", index = org.hibernate.search.annotations.Index.YES, store = Store.YES, analyze = Analyze.YES, analyzer = @Analyzer(definition = "exactAnalyzer")),})
|
||||
private String myCode;
|
||||
@Temporal(TemporalType.TIMESTAMP)
|
||||
|
|
|
@ -62,7 +62,7 @@ public class TermValueSet implements Serializable {
|
|||
@Column(name = "RES_ID", insertable = false, updatable = false)
|
||||
private Long myResourcePid;
|
||||
|
||||
@Column(name = "NAME", nullable = true, length = MAX_NAME_LENGTH)
|
||||
@Column(name = "VSNAME", nullable = true, length = MAX_NAME_LENGTH)
|
||||
private String myName;
|
||||
|
||||
@OneToMany(mappedBy = "myValueSet")
|
||||
|
|
|
@ -36,7 +36,7 @@ import static org.apache.commons.lang3.StringUtils.left;
|
|||
import static org.apache.commons.lang3.StringUtils.length;
|
||||
|
||||
@Table(name = "TRM_VALUESET_CONCEPT", indexes = {
|
||||
@Index(name = "IDX_VALUESET_CONCEPT_CS_CD", columnList = "SYSTEM, CODE")
|
||||
@Index(name = "IDX_VALUESET_CONCEPT_CS_CD", columnList = "SYSTEM, CODEVAL")
|
||||
})
|
||||
@Entity()
|
||||
public class TermValueSetConcept implements Serializable {
|
||||
|
@ -58,10 +58,10 @@ public class TermValueSetConcept implements Serializable {
|
|||
@Transient
|
||||
private String myValueSetName;
|
||||
|
||||
@Column(name = "SYSTEM", nullable = false, length = TermCodeSystem.MAX_URL_LENGTH)
|
||||
@Column(name = "SYSTEM_URL", nullable = false, length = TermCodeSystem.MAX_URL_LENGTH)
|
||||
private String mySystem;
|
||||
|
||||
@Column(name = "CODE", nullable = false, length = TermConcept.MAX_CODE_LENGTH)
|
||||
@Column(name = "CODEVAL", nullable = false, length = TermConcept.MAX_CODE_LENGTH)
|
||||
private String myCode;
|
||||
|
||||
@Column(name = "DISPLAY", nullable = true, length = TermConcept.MAX_DESC_LENGTH)
|
||||
|
|
|
@ -3,7 +3,7 @@ package ca.uhn.fhir.jpa.provider;
|
|||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.jpa.util.ExpungeOptions;
|
||||
import ca.uhn.fhir.jpa.util.ExpungeOutcome;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.param.DateRangeParam;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
|
||||
|
|
|
@ -1,24 +1,12 @@
|
|||
package ca.uhn.fhir.jpa.provider;
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoComposition;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
|
||||
import ca.uhn.fhir.model.dstu2.resource.Bundle;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Composition;
|
||||
import ca.uhn.fhir.model.valueset.BundleTypeEnum;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
import ca.uhn.fhir.rest.annotation.Sort;
|
||||
import ca.uhn.fhir.rest.api.Constants;
|
||||
import ca.uhn.fhir.rest.api.SortSpec;
|
||||
import ca.uhn.fhir.rest.api.server.IBundleProvider;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import ca.uhn.fhir.rest.param.DateRangeParam;
|
||||
import org.hl7.fhir.instance.model.api.IBaseBundle;
|
||||
import org.springframework.http.HttpStatus;
|
||||
import org.springframework.http.ResponseEntity;
|
||||
|
||||
/*
|
||||
* #%L
|
||||
|
|
|
@ -21,7 +21,7 @@ package ca.uhn.fhir.jpa.provider;
|
|||
*/
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoEncounter;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Encounter;
|
||||
import ca.uhn.fhir.model.valueset.BundleTypeEnum;
|
||||
|
|
|
@ -25,7 +25,7 @@ import java.util.List;
|
|||
*/
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoPatient;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Patient;
|
||||
import ca.uhn.fhir.model.primitive.StringDt;
|
||||
|
|
|
@ -28,7 +28,7 @@ import ca.uhn.fhir.jpa.dao.IFhirResourceDaoCodeSystem;
|
|||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoCodeSystem.LookupCodeResult;
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet;
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet.ValidateCodeResult;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.dstu2.composite.CodeableConceptDt;
|
||||
import ca.uhn.fhir.model.dstu2.composite.CodingDt;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Parameters;
|
||||
|
|
|
@ -0,0 +1,257 @@
|
|||
package ca.uhn.fhir.jpa.provider;
|
||||
|
||||
/*-
|
||||
* #%L
|
||||
* HAPI FHIR JPA Server
|
||||
* %%
|
||||
* Copyright (C) 2014 - 2019 University Health Network
|
||||
* %%
|
||||
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||
* you may not use this file except in compliance with the License.
|
||||
* You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
* #L%
|
||||
*/
|
||||
|
||||
import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.jpa.binstore.IBinaryStorageSvc;
|
||||
import ca.uhn.fhir.jpa.dao.DaoMethodOutcome;
|
||||
import ca.uhn.fhir.jpa.dao.DaoRegistry;
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
import ca.uhn.fhir.rest.api.Constants;
|
||||
import ca.uhn.fhir.rest.api.EncodingEnum;
|
||||
import ca.uhn.fhir.rest.server.RestfulServer;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
|
||||
import ca.uhn.fhir.util.AttachmentUtil;
|
||||
import ca.uhn.fhir.util.DateUtils;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.apache.commons.lang3.Validate;
|
||||
import org.hl7.fhir.instance.model.api.*;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
|
||||
import javax.annotation.Nonnull;
|
||||
import javax.servlet.http.HttpServletRequest;
|
||||
import javax.servlet.http.HttpServletResponse;
|
||||
import java.io.IOException;
|
||||
import java.util.Optional;
|
||||
|
||||
import static ca.uhn.fhir.util.UrlUtil.sanitizeUrlPart;
|
||||
import static org.apache.commons.lang3.StringUtils.isBlank;
|
||||
|
||||
/**
|
||||
* This plain provider class can be registered with a JPA RestfulServer
|
||||
* to provide the <code>$binary-access-read</code> and <code>$binary-access-write</code>
|
||||
* operations that can be used to access attachment data as a raw binary.
|
||||
*/
|
||||
public class BinaryAccessProvider {
|
||||
|
||||
@Autowired
|
||||
private FhirContext myCtx;
|
||||
@Autowired
|
||||
private DaoRegistry myDaoRegistry;
|
||||
@Autowired(required = false)
|
||||
private IBinaryStorageSvc myBinaryStorageSvc;
|
||||
|
||||
/**
|
||||
* $binary-access-read
|
||||
*/
|
||||
@Operation(name = JpaConstants.OPERATION_BINARY_ACCESS_READ, global = true, manualResponse = true, idempotent = true)
|
||||
public void binaryAccessRead(
|
||||
@IdParam IIdType theResourceId,
|
||||
@OperationParam(name = "path", min = 1, max = 1) IPrimitiveType<String> thePath,
|
||||
ServletRequestDetails theRequestDetails,
|
||||
HttpServletRequest theServletRequest,
|
||||
HttpServletResponse theServletResponse) throws IOException {
|
||||
|
||||
validateResourceTypeAndPath(theResourceId, thePath);
|
||||
IFhirResourceDao dao = getDaoForRequest(theResourceId);
|
||||
IBaseResource resource = dao.read(theResourceId, theRequestDetails, false);
|
||||
|
||||
ICompositeType attachment = findAttachmentForRequest(resource, thePath, theRequestDetails);
|
||||
|
||||
IBaseHasExtensions attachmentHasExt = (IBaseHasExtensions) attachment;
|
||||
Optional<? extends IBaseExtension<?, ?>> attachmentId = attachmentHasExt
|
||||
.getExtension()
|
||||
.stream()
|
||||
.filter(t -> JpaConstants.EXT_ATTACHMENT_EXTERNAL_BINARY_ID.equals(t.getUrl()))
|
||||
.findFirst();
|
||||
|
||||
if (attachmentId.isPresent()) {
|
||||
|
||||
@SuppressWarnings("unchecked")
|
||||
IPrimitiveType<String> value = (IPrimitiveType<String>) attachmentId.get().getValue();
|
||||
String blobId = value.getValueAsString();
|
||||
|
||||
IBinaryStorageSvc.StoredDetails blobDetails = myBinaryStorageSvc.fetchBlobDetails(theResourceId, blobId);
|
||||
if (blobDetails == null) {
|
||||
String msg = myCtx.getLocalizer().getMessage(BinaryAccessProvider.class, "unknownBlobId");
|
||||
throw new InvalidRequestException(msg);
|
||||
}
|
||||
|
||||
theServletResponse.setStatus(200);
|
||||
theServletResponse.setContentType(blobDetails.getContentType());
|
||||
if (blobDetails.getBytes() <= Integer.MAX_VALUE) {
|
||||
theServletResponse.setContentLength((int) blobDetails.getBytes());
|
||||
}
|
||||
|
||||
RestfulServer server = theRequestDetails.getServer();
|
||||
server.addHeadersToResponse(theServletResponse);
|
||||
|
||||
theServletResponse.addHeader(Constants.HEADER_CACHE_CONTROL, Constants.CACHE_CONTROL_PRIVATE);
|
||||
theServletResponse.addHeader(Constants.HEADER_ETAG, '"' + blobDetails.getHash() + '"');
|
||||
theServletResponse.addHeader(Constants.HEADER_LAST_MODIFIED, DateUtils.formatDate(blobDetails.getPublished()));
|
||||
|
||||
myBinaryStorageSvc.writeBlob(theResourceId, blobId, theServletResponse.getOutputStream());
|
||||
theServletResponse.getOutputStream().close();
|
||||
|
||||
myBinaryStorageSvc.writeBlob(theResourceId, blobId, theServletResponse.getOutputStream());
|
||||
|
||||
} else {
|
||||
|
||||
IPrimitiveType<String> contentTypeDt = AttachmentUtil.getOrCreateContentType(theRequestDetails.getFhirContext(), attachment);
|
||||
String contentType = contentTypeDt.getValueAsString();
|
||||
contentType = StringUtils.defaultIfBlank(contentType, Constants.CT_OCTET_STREAM);
|
||||
|
||||
IPrimitiveType<byte[]> dataDt = AttachmentUtil.getOrCreateData(theRequestDetails.getFhirContext(), attachment);
|
||||
byte[] data = dataDt.getValue();
|
||||
if (data == null) {
|
||||
String msg = myCtx.getLocalizer().getMessage(BinaryAccessProvider.class, "noAttachmentDataPresent", sanitizeUrlPart(theResourceId), sanitizeUrlPart(thePath));
|
||||
throw new InvalidRequestException(msg);
|
||||
}
|
||||
|
||||
theServletResponse.setStatus(200);
|
||||
theServletResponse.setContentType(contentType);
|
||||
theServletResponse.setContentLength(data.length);
|
||||
|
||||
RestfulServer server = theRequestDetails.getServer();
|
||||
server.addHeadersToResponse(theServletResponse);
|
||||
|
||||
theServletResponse.getOutputStream().write(data);
|
||||
theServletResponse.getOutputStream().close();
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* $binary-access-write
|
||||
*/
|
||||
@SuppressWarnings("unchecked")
|
||||
@Operation(name = JpaConstants.OPERATION_BINARY_ACCESS_WRITE, global = true, manualRequest = true, idempotent = false)
|
||||
public IBaseResource binaryAccessWrite(
|
||||
@IdParam IIdType theResourceId,
|
||||
@OperationParam(name = "path", min = 1, max = 1) IPrimitiveType<String> thePath,
|
||||
ServletRequestDetails theRequestDetails,
|
||||
HttpServletRequest theServletRequest,
|
||||
HttpServletResponse theServletResponse) throws IOException {
|
||||
|
||||
validateResourceTypeAndPath(theResourceId, thePath);
|
||||
IFhirResourceDao dao = getDaoForRequest(theResourceId);
|
||||
IBaseResource resource = dao.read(theResourceId, theRequestDetails, false);
|
||||
|
||||
ICompositeType attachment = findAttachmentForRequest(resource, thePath, theRequestDetails);
|
||||
|
||||
String requestContentType = theServletRequest.getContentType();
|
||||
if (isBlank(requestContentType)) {
|
||||
throw new InvalidRequestException("No content-attachment supplied");
|
||||
}
|
||||
if (EncodingEnum.forContentTypeStrict(requestContentType) != null) {
|
||||
throw new InvalidRequestException("This operation is for binary content, got: " + requestContentType);
|
||||
}
|
||||
|
||||
long size = theServletRequest.getContentLength();
|
||||
String blobId = null;
|
||||
|
||||
if (size > 0) {
|
||||
if (myBinaryStorageSvc != null) {
|
||||
if (myBinaryStorageSvc.shouldStoreBlob(size, theResourceId, requestContentType)) {
|
||||
IBinaryStorageSvc.StoredDetails storedDetails = myBinaryStorageSvc.storeBlob(theResourceId, requestContentType, theRequestDetails.getInputStream());
|
||||
size = storedDetails.getBytes();
|
||||
blobId = storedDetails.getBlobId();
|
||||
Validate.notBlank(blobId, "BinaryStorageSvc returned a null blob ID"); // should not happen
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (blobId == null) {
|
||||
byte[] bytes = IOUtils.toByteArray(theRequestDetails.getInputStream());
|
||||
size = bytes.length;
|
||||
AttachmentUtil.setData(theRequestDetails.getFhirContext(), attachment, bytes);
|
||||
} else {
|
||||
|
||||
IBaseHasExtensions attachmentHasExt = (IBaseHasExtensions) attachment;
|
||||
attachmentHasExt.getExtension().removeIf(t -> JpaConstants.EXT_ATTACHMENT_EXTERNAL_BINARY_ID.equals(t.getUrl()));
|
||||
AttachmentUtil.setData(myCtx, attachment, null);
|
||||
|
||||
IBaseExtension<?, ?> ext = attachmentHasExt.addExtension();
|
||||
ext.setUrl(JpaConstants.EXT_ATTACHMENT_EXTERNAL_BINARY_ID);
|
||||
IPrimitiveType<String> blobIdString = (IPrimitiveType<String>) myCtx.getElementDefinition("string").newInstance();
|
||||
blobIdString.setValueAsString(blobId);
|
||||
ext.setValue(blobIdString);
|
||||
}
|
||||
|
||||
AttachmentUtil.setContentType(theRequestDetails.getFhirContext(), attachment, requestContentType);
|
||||
|
||||
AttachmentUtil.setSize(theRequestDetails.getFhirContext(), attachment, null);
|
||||
if (size <= Integer.MAX_VALUE) {
|
||||
AttachmentUtil.setSize(theRequestDetails.getFhirContext(), attachment, (int) size);
|
||||
}
|
||||
|
||||
DaoMethodOutcome outcome = dao.update(resource, theRequestDetails);
|
||||
return outcome.getResource();
|
||||
}
|
||||
|
||||
@Nonnull
|
||||
private ICompositeType findAttachmentForRequest(IBaseResource theResource, @OperationParam(name = "path", min = 1, max = 1) IPrimitiveType<String> thePath, ServletRequestDetails theRequestDetails) {
|
||||
FhirContext ctx = theRequestDetails.getFhirContext();
|
||||
String path = thePath.getValueAsString();
|
||||
|
||||
Optional<ICompositeType> type = ctx.newFluentPath().evaluateFirst(theResource, path, ICompositeType.class);
|
||||
if (!type.isPresent()) {
|
||||
throw new InvalidRequestException("Unable to find Attachment at path: " + sanitizeUrlPart(path));
|
||||
}
|
||||
|
||||
BaseRuntimeElementDefinition<?> def = ctx.getElementDefinition(type.get().getClass());
|
||||
if (!def.getName().equals("Attachment")) {
|
||||
throw new InvalidRequestException("Path does not return an Attachment: " + sanitizeUrlPart(path));
|
||||
}
|
||||
return type.get();
|
||||
}
|
||||
|
||||
private void validateResourceTypeAndPath(@IdParam IIdType theResourceId, @OperationParam(name = "path", min = 1, max = 1) IPrimitiveType<String> thePath) {
|
||||
if (isBlank(theResourceId.getResourceType())) {
|
||||
throw new InvalidRequestException("No resource type specified");
|
||||
}
|
||||
if (isBlank(theResourceId.getIdPart())) {
|
||||
throw new InvalidRequestException("No ID specified");
|
||||
}
|
||||
if (thePath == null || isBlank(thePath.getValue())) {
|
||||
throw new InvalidRequestException("No path specified");
|
||||
}
|
||||
}
|
||||
|
||||
@Nonnull
|
||||
private IFhirResourceDao getDaoForRequest(@IdParam IIdType theResourceId) {
|
||||
String resourceType = theResourceId.getResourceType();
|
||||
IFhirResourceDao dao = myDaoRegistry.getResourceDao(resourceType);
|
||||
if (dao == null) {
|
||||
throw new InvalidRequestException("Unknown/unsupported resource type: " + sanitizeUrlPart(resourceType));
|
||||
}
|
||||
return dao;
|
||||
}
|
||||
|
||||
|
||||
}
|
|
@ -21,7 +21,7 @@ package ca.uhn.fhir.jpa.provider;
|
|||
*/
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.IResource;
|
||||
import ca.uhn.fhir.model.dstu2.composite.MetaDt;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Parameters;
|
||||
|
@ -38,7 +38,7 @@ import org.hl7.fhir.instance.model.api.IIdType;
|
|||
|
||||
import javax.servlet.http.HttpServletRequest;
|
||||
|
||||
import static ca.uhn.fhir.jpa.util.JpaConstants.*;
|
||||
import static ca.uhn.fhir.jpa.model.util.JpaConstants.*;
|
||||
|
||||
public class JpaResourceProviderDstu2<T extends IResource> extends BaseJpaResourceProvider<T> {
|
||||
|
||||
|
|
|
@ -4,7 +4,7 @@ import ca.uhn.fhir.jpa.dao.FulltextSearchSvcImpl.Suggestion;
|
|||
import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
|
||||
import ca.uhn.fhir.jpa.dao.IFulltextSearchSvc;
|
||||
import ca.uhn.fhir.jpa.provider.dstu3.JpaSystemProviderDstu3;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.model.dstu2.composite.MetaDt;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Bundle;
|
||||
|
|
|
@ -22,7 +22,7 @@ package ca.uhn.fhir.jpa.provider;
|
|||
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.jpa.subscription.ISubscriptionTriggeringSvc;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.dstu2.valueset.ResourceTypeEnum;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
|
|
|
@ -22,7 +22,7 @@ package ca.uhn.fhir.jpa.provider.dstu3;
|
|||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoCodeSystem;
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoCodeSystem.LookupCodeResult;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
|
|
|
@ -1,7 +1,7 @@
|
|||
package ca.uhn.fhir.jpa.provider.dstu3;
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoComposition;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.model.valueset.BundleTypeEnum;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
|
@ -13,13 +13,10 @@ import ca.uhn.fhir.rest.api.SortSpec;
|
|||
import ca.uhn.fhir.rest.api.server.IBundleProvider;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import ca.uhn.fhir.rest.param.DateRangeParam;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import org.hl7.fhir.dstu3.model.*;
|
||||
import org.hl7.fhir.instance.model.api.IBaseBundle;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
|
||||
import javax.print.attribute.standard.Severity;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
/*
|
||||
|
|
|
@ -23,7 +23,7 @@ package ca.uhn.fhir.jpa.provider.dstu3;
|
|||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoConceptMap;
|
||||
import ca.uhn.fhir.jpa.term.TranslationRequest;
|
||||
import ca.uhn.fhir.jpa.term.TranslationResult;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
|
|
|
@ -1,6 +1,6 @@
|
|||
package ca.uhn.fhir.jpa.provider.dstu3;
|
||||
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import org.hl7.fhir.dstu3.model.*;
|
||||
|
||||
/*
|
||||
|
|
|
@ -1,7 +1,7 @@
|
|||
package ca.uhn.fhir.jpa.provider.dstu3;
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoPatient;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.model.valueset.BundleTypeEnum;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
|
|
|
@ -2,15 +2,13 @@ package ca.uhn.fhir.jpa.provider.dstu3;
|
|||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoStructureDefinition;
|
||||
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
import ca.uhn.fhir.rest.api.server.IBundleProvider;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import ca.uhn.fhir.rest.param.StringParam;
|
||||
import ca.uhn.fhir.rest.param.UriParam;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
|
||||
import ca.uhn.fhir.util.ValidateUtil;
|
||||
import org.hl7.fhir.dstu3.model.IdType;
|
||||
|
|
|
@ -22,7 +22,7 @@ package ca.uhn.fhir.jpa.provider.dstu3;
|
|||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet;
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet.ValidateCodeResult;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
|
|
|
@ -22,7 +22,7 @@ package ca.uhn.fhir.jpa.provider.dstu3;
|
|||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
|
||||
import ca.uhn.fhir.jpa.provider.BaseJpaResourceProvider;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.*;
|
||||
import ca.uhn.fhir.rest.api.EncodingEnum;
|
||||
import ca.uhn.fhir.rest.api.MethodOutcome;
|
||||
|
@ -38,9 +38,9 @@ import org.hl7.fhir.instance.model.api.IIdType;
|
|||
|
||||
import javax.servlet.http.HttpServletRequest;
|
||||
|
||||
import static ca.uhn.fhir.jpa.util.JpaConstants.OPERATION_META;
|
||||
import static ca.uhn.fhir.jpa.util.JpaConstants.OPERATION_META_ADD;
|
||||
import static ca.uhn.fhir.jpa.util.JpaConstants.OPERATION_META_DELETE;
|
||||
import static ca.uhn.fhir.jpa.model.util.JpaConstants.OPERATION_META;
|
||||
import static ca.uhn.fhir.jpa.model.util.JpaConstants.OPERATION_META_ADD;
|
||||
import static ca.uhn.fhir.jpa.model.util.JpaConstants.OPERATION_META_DELETE;
|
||||
|
||||
public class JpaResourceProviderDstu3<T extends IAnyResource> extends BaseJpaResourceProvider<T> {
|
||||
|
||||
|
|
|
@ -4,7 +4,7 @@ import ca.uhn.fhir.jpa.dao.FulltextSearchSvcImpl.Suggestion;
|
|||
import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
|
||||
import ca.uhn.fhir.jpa.dao.IFulltextSearchSvc;
|
||||
import ca.uhn.fhir.jpa.provider.BaseJpaSystemProviderDstu2Plus;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.rest.annotation.*;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
|
|
|
@ -22,7 +22,7 @@ package ca.uhn.fhir.jpa.provider.r4;
|
|||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoCodeSystem;
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoCodeSystem.LookupCodeResult;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
|
|
|
@ -1,7 +1,7 @@
|
|||
package ca.uhn.fhir.jpa.provider.r4;
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoComposition;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.model.valueset.BundleTypeEnum;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
|
|
|
@ -23,7 +23,7 @@ package ca.uhn.fhir.jpa.provider.r4;
|
|||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoConceptMap;
|
||||
import ca.uhn.fhir.jpa.term.TranslationRequest;
|
||||
import ca.uhn.fhir.jpa.term.TranslationResult;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
|
|
|
@ -1,6 +1,6 @@
|
|||
package ca.uhn.fhir.jpa.provider.r4;
|
||||
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import org.hl7.fhir.r4.model.*;
|
||||
|
||||
/*
|
||||
|
|
|
@ -1,17 +1,7 @@
|
|||
package ca.uhn.fhir.jpa.provider.r4;
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoMessageHeader;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import org.hl7.fhir.instance.model.api.IBaseBundle;
|
||||
import org.hl7.fhir.r4.model.Bundle;
|
||||
import org.hl7.fhir.r4.model.MessageHeader;
|
||||
|
||||
import javax.servlet.http.HttpServletRequest;
|
||||
|
||||
/*
|
||||
* #%L
|
||||
* HAPI FHIR JPA Server
|
||||
|
|
|
@ -1,7 +1,7 @@
|
|||
package ca.uhn.fhir.jpa.provider.r4;
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoPatient;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.model.valueset.BundleTypeEnum;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
|
|
|
@ -2,7 +2,7 @@ package ca.uhn.fhir.jpa.provider.r4;
|
|||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoStructureDefinition;
|
||||
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
|
|
|
@ -22,7 +22,7 @@ package ca.uhn.fhir.jpa.provider.r4;
|
|||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet;
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet.ValidateCodeResult;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
|
|
|
@ -22,7 +22,7 @@ package ca.uhn.fhir.jpa.provider.r4;
|
|||
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
|
||||
import ca.uhn.fhir.jpa.provider.BaseJpaResourceProvider;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.*;
|
||||
import ca.uhn.fhir.rest.api.EncodingEnum;
|
||||
import ca.uhn.fhir.rest.api.MethodOutcome;
|
||||
|
@ -35,9 +35,9 @@ import org.hl7.fhir.r4.model.*;
|
|||
|
||||
import javax.servlet.http.HttpServletRequest;
|
||||
|
||||
import static ca.uhn.fhir.jpa.util.JpaConstants.OPERATION_META;
|
||||
import static ca.uhn.fhir.jpa.util.JpaConstants.OPERATION_META_ADD;
|
||||
import static ca.uhn.fhir.jpa.util.JpaConstants.OPERATION_META_DELETE;
|
||||
import static ca.uhn.fhir.jpa.model.util.JpaConstants.OPERATION_META;
|
||||
import static ca.uhn.fhir.jpa.model.util.JpaConstants.OPERATION_META_ADD;
|
||||
import static ca.uhn.fhir.jpa.model.util.JpaConstants.OPERATION_META_DELETE;
|
||||
|
||||
public class JpaResourceProviderR4<T extends IAnyResource> extends BaseJpaResourceProvider<T> {
|
||||
|
||||
|
|
|
@ -4,7 +4,7 @@ import ca.uhn.fhir.jpa.dao.FulltextSearchSvcImpl.Suggestion;
|
|||
import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
|
||||
import ca.uhn.fhir.jpa.dao.IFulltextSearchSvc;
|
||||
import ca.uhn.fhir.jpa.provider.BaseJpaSystemProviderDstu2Plus;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.rest.annotation.*;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
|
|
|
@ -21,11 +21,14 @@ package ca.uhn.fhir.jpa.term;
|
|||
*/
|
||||
|
||||
import ca.uhn.fhir.jpa.entity.TermConceptDesignation;
|
||||
import ca.uhn.fhir.model.api.annotation.Block;
|
||||
import org.hl7.fhir.r4.model.ValueSet;
|
||||
|
||||
import java.util.Collection;
|
||||
|
||||
@Block()
|
||||
public class ValueSetExpansionComponentWithCodeAccumulator extends ValueSet.ValueSetExpansionComponent implements IValueSetCodeAccumulator {
|
||||
|
||||
@Override
|
||||
public void includeCode(String theSystem, String theCode, String theDisplay) {
|
||||
ValueSet.ValueSetExpansionContainsComponent contains = this.addContains();
|
||||
|
|
|
@ -0,0 +1,44 @@
|
|||
package ca.uhn.fhir.jpa.util;
|
||||
|
||||
/*-
|
||||
* #%L
|
||||
* HAPI FHIR JPA Server
|
||||
* %%
|
||||
* Copyright (C) 2014 - 2019 University Health Network
|
||||
* %%
|
||||
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||
* you may not use this file except in compliance with the License.
|
||||
* You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
* #L%
|
||||
*/
|
||||
|
||||
import com.fasterxml.jackson.core.JsonParser;
|
||||
import com.fasterxml.jackson.databind.DeserializationContext;
|
||||
import com.fasterxml.jackson.databind.JsonDeserializer;
|
||||
import org.hl7.fhir.dstu3.model.DateTimeType;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.util.Date;
|
||||
|
||||
import static org.apache.commons.lang3.StringUtils.isNotBlank;
|
||||
|
||||
public class JsonDateDeserializer extends JsonDeserializer<Date> {
|
||||
|
||||
@Override
|
||||
public Date deserialize(JsonParser theParser, DeserializationContext theDeserializationContext) throws IOException {
|
||||
String string = theParser.getValueAsString();
|
||||
if (isNotBlank(string)) {
|
||||
return new DateTimeType(string).getValue();
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
}
|
|
@ -0,0 +1,40 @@
|
|||
package ca.uhn.fhir.jpa.util;
|
||||
|
||||
/*-
|
||||
* #%L
|
||||
* HAPI FHIR JPA Server
|
||||
* %%
|
||||
* Copyright (C) 2014 - 2019 University Health Network
|
||||
* %%
|
||||
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||
* you may not use this file except in compliance with the License.
|
||||
* You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
* #L%
|
||||
*/
|
||||
|
||||
import com.fasterxml.jackson.core.JsonGenerator;
|
||||
import com.fasterxml.jackson.databind.JsonSerializer;
|
||||
import com.fasterxml.jackson.databind.SerializerProvider;
|
||||
import org.hl7.fhir.dstu3.model.InstantType;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.util.Date;
|
||||
|
||||
public class JsonDateSerializer extends JsonSerializer<Date> {
|
||||
|
||||
@Override
|
||||
public void serialize(Date theValue, JsonGenerator theGen, SerializerProvider theSerializers) throws IOException {
|
||||
if (theValue != null) {
|
||||
theGen.writeString(new InstantType(theValue).getValueAsString());
|
||||
}
|
||||
}
|
||||
|
||||
}
|
|
@ -20,29 +20,39 @@ package ca.uhn.fhir.jpa.util;
|
|||
* #L%
|
||||
*/
|
||||
|
||||
import ca.uhn.fhir.rest.api.Constants;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
||||
import com.google.common.collect.ImmutableSet;
|
||||
import com.google.common.reflect.ClassPath;
|
||||
import com.google.common.reflect.ClassPath.ClassInfo;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.commons.lang3.Validate;
|
||||
import org.hibernate.validator.constraints.Length;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
import org.hl7.fhir.r4.model.InstantType;
|
||||
|
||||
import javax.persistence.*;
|
||||
import javax.validation.constraints.Size;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.lang.reflect.AnnotatedElement;
|
||||
import java.lang.reflect.Field;
|
||||
import java.lang.reflect.Modifier;
|
||||
import java.util.Arrays;
|
||||
import java.util.Date;
|
||||
import java.util.HashSet;
|
||||
import java.util.Set;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import static com.google.common.base.Ascii.toUpperCase;
|
||||
import static org.apache.commons.lang3.StringUtils.isBlank;
|
||||
import static org.apache.commons.lang3.StringUtils.isNotBlank;
|
||||
|
||||
public class TestUtil {
|
||||
public static final int MAX_COL_LENGTH = 2000;
|
||||
private static final int MAX_LENGTH = 30;
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(TestUtil.class);
|
||||
private static Set<String> ourReservedWords;
|
||||
|
||||
/**
|
||||
* non instantiable
|
||||
|
@ -56,6 +66,16 @@ public class TestUtil {
|
|||
*/
|
||||
@SuppressWarnings("UnstableApiUsage")
|
||||
public static void scanEntities(String packageName) throws IOException, ClassNotFoundException {
|
||||
|
||||
try (InputStream is = TestUtil.class.getResourceAsStream("/mysql-reserved-words.txt")) {
|
||||
String contents = IOUtils.toString(is, Constants.CHARSET_UTF8);
|
||||
String[] words = contents.split("\\n");
|
||||
ourReservedWords = Arrays.stream(words)
|
||||
.filter(t -> isNotBlank(t))
|
||||
.map(t -> toUpperCase(t))
|
||||
.collect(Collectors.toSet());
|
||||
}
|
||||
|
||||
ImmutableSet<ClassInfo> classes = ClassPath.from(TestUtil.class.getClassLoader()).getTopLevelClasses(packageName);
|
||||
Set<String> names = new HashSet<String>();
|
||||
|
||||
|
@ -138,7 +158,10 @@ public class TestUtil {
|
|||
|
||||
JoinColumn joinColumn = theAnnotatedElement.getAnnotation(JoinColumn.class);
|
||||
if (joinColumn != null) {
|
||||
assertNotADuplicateName(joinColumn.name(), null);
|
||||
String columnName = joinColumn.name();
|
||||
validateColumnName(columnName, theAnnotatedElement);
|
||||
|
||||
assertNotADuplicateName(columnName, null);
|
||||
ForeignKey fk = joinColumn.foreignKey();
|
||||
if (theIsSuperClass) {
|
||||
Validate.isTrue(isBlank(fk.name()), "Foreign key on " + theAnnotatedElement.toString() + " has a name() and should not as it is a superclass");
|
||||
|
@ -152,8 +175,47 @@ public class TestUtil {
|
|||
|
||||
Column column = theAnnotatedElement.getAnnotation(Column.class);
|
||||
if (column != null) {
|
||||
assertNotADuplicateName(column.name(), null);
|
||||
String columnName = column.name();
|
||||
validateColumnName(columnName, theAnnotatedElement);
|
||||
|
||||
assertNotADuplicateName(columnName, null);
|
||||
Validate.isTrue(column.unique() == false, "Should not use unique attribute on column (use named @UniqueConstraint instead) on " + theAnnotatedElement.toString());
|
||||
|
||||
boolean hasLob = theAnnotatedElement.getAnnotation(Lob.class) != null;
|
||||
Field field = (Field) theAnnotatedElement;
|
||||
|
||||
/*
|
||||
* For string columns, we want to make sure that an explicit max
|
||||
* length is always specified, and that this max is always sensible.
|
||||
* Unfortunately there is no way to differentiate between "explicitly
|
||||
* set to 255" and "just using the default of 255" so we have banned
|
||||
* the exact length of 255.
|
||||
*/
|
||||
if (field.getType().equals(String.class)) {
|
||||
if (!hasLob) {
|
||||
if (column.length() == 255) {
|
||||
throw new IllegalStateException("Field does not have an explicit maximum length specified: " + field);
|
||||
}
|
||||
if (column.length() > MAX_COL_LENGTH) {
|
||||
throw new IllegalStateException("Field is too long: " + field);
|
||||
}
|
||||
}
|
||||
|
||||
Size size = theAnnotatedElement.getAnnotation(Size.class);
|
||||
if (size != null) {
|
||||
if (size.max() > MAX_COL_LENGTH) {
|
||||
throw new IllegalStateException("Field is too long: " + field);
|
||||
}
|
||||
}
|
||||
|
||||
Length length = theAnnotatedElement.getAnnotation(Length.class);
|
||||
if (length != null) {
|
||||
if (length.max() > MAX_COL_LENGTH) {
|
||||
throw new IllegalStateException("Field is too long: " + field);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
GeneratedValue gen = theAnnotatedElement.getAnnotation(GeneratedValue.class);
|
||||
|
@ -169,6 +231,15 @@ public class TestUtil {
|
|||
|
||||
}
|
||||
|
||||
private static void validateColumnName(String theColumnName, AnnotatedElement theElement) {
|
||||
if (!theColumnName.equals(theColumnName.toUpperCase())) {
|
||||
throw new IllegalArgumentException("Column name must be all upper case: " + theColumnName + " found on " + theElement);
|
||||
}
|
||||
if (ourReservedWords.contains(theColumnName)) {
|
||||
throw new IllegalArgumentException("Column name is a reserved word: " + theColumnName + " found on " + theElement);
|
||||
}
|
||||
}
|
||||
|
||||
private static void assertEquals(String theGenerator, String theName) {
|
||||
Validate.isTrue(theGenerator.equals(theName));
|
||||
}
|
||||
|
@ -209,4 +280,6 @@ public class TestUtil {
|
|||
public static void sleepOneClick() {
|
||||
sleepAtLeast(1);
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
|
|
@ -0,0 +1,21 @@
|
|||
package ca.uhn.fhir.jpa.binstore;
|
||||
|
||||
import org.junit.Test;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import static org.hamcrest.Matchers.matchesPattern;
|
||||
import static org.junit.Assert.assertThat;
|
||||
|
||||
public class BaseBinaryStorageSvcImplTest {
|
||||
|
||||
private static final Logger ourLog = LoggerFactory.getLogger(BaseBinaryStorageSvcImplTest.class);
|
||||
|
||||
@Test
|
||||
public void testNewRandomId() {
|
||||
MemoryBinaryStorageSvcImpl svc = new MemoryBinaryStorageSvcImpl();
|
||||
String id = svc.newRandomId();
|
||||
ourLog.info(id);
|
||||
assertThat(id, matchesPattern("^[a-zA-Z0-9]{100}$"));
|
||||
}
|
||||
}
|
|
@ -0,0 +1,59 @@
|
|||
package ca.uhn.fhir.jpa.binstore;
|
||||
|
||||
import org.apache.commons.io.FileUtils;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
import org.hl7.fhir.r4.model.IdType;
|
||||
import org.junit.After;
|
||||
import org.junit.Before;
|
||||
import org.junit.Test;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.ByteArrayOutputStream;
|
||||
import java.io.File;
|
||||
import java.io.IOException;
|
||||
|
||||
import static org.junit.Assert.*;
|
||||
|
||||
public class FilesystemBinaryStorageSvcImplTest {
|
||||
|
||||
private static final Logger ourLog = LoggerFactory.getLogger(FilesystemBinaryStorageSvcImplTest.class);
|
||||
public static final byte[] SOME_BYTES = {2, 3, 4, 5, 6, 7, 8, 9, 8, 7, 6, 5, 4, 3, 2, 1};
|
||||
private File myPath;
|
||||
private FilesystemBinaryStorageSvcImpl mySvc;
|
||||
|
||||
@Before
|
||||
public void before() {
|
||||
myPath = new File("./target/fstmp");
|
||||
mySvc = new FilesystemBinaryStorageSvcImpl(myPath.getAbsolutePath());
|
||||
}
|
||||
|
||||
@After
|
||||
public void after() throws IOException {
|
||||
FileUtils.deleteDirectory(myPath);
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testStoreAndRetrieve() throws IOException {
|
||||
IIdType id = new IdType("Patient/123");
|
||||
String contentType = "image/png";
|
||||
IBinaryStorageSvc.StoredDetails outcome = mySvc.storeBlob(id, contentType, new ByteArrayInputStream(SOME_BYTES));
|
||||
|
||||
ourLog.info("Got id: {}", outcome);
|
||||
|
||||
IBinaryStorageSvc.StoredDetails details = mySvc.fetchBlobDetails(id, outcome.getBlobId());
|
||||
assertEquals(16L, details.getBytes());
|
||||
assertEquals(outcome.getBlobId(), details.getBlobId());
|
||||
assertEquals("image/png", details.getContentType());
|
||||
assertEquals("dc7197cfab936698bef7818975c185a9b88b71a0a0a2493deea487706ddf20cb", details.getHash());
|
||||
assertNotNull(details.getPublished());
|
||||
|
||||
ByteArrayOutputStream capture = new ByteArrayOutputStream();
|
||||
mySvc.writeBlob(id, outcome.getBlobId(), capture);
|
||||
|
||||
assertArrayEquals(SOME_BYTES, capture.toByteArray());
|
||||
}
|
||||
|
||||
|
||||
}
|
|
@ -0,0 +1,31 @@
|
|||
package ca.uhn.fhir.jpa.binstore;
|
||||
|
||||
import org.hl7.fhir.r4.model.IdType;
|
||||
import org.junit.Test;
|
||||
|
||||
import static org.junit.Assert.assertFalse;
|
||||
|
||||
public class NullBinaryStorageSvcImplTest {
|
||||
|
||||
private NullBinaryStorageSvcImpl mySvc = new NullBinaryStorageSvcImpl();
|
||||
|
||||
@Test
|
||||
public void shouldStoreBlob() {
|
||||
assertFalse(mySvc.shouldStoreBlob(1, new IdType("Patient/2"), "application/json"));
|
||||
}
|
||||
|
||||
@Test(expected = UnsupportedOperationException.class)
|
||||
public void storeBlob() {
|
||||
mySvc.storeBlob(null, null, null);
|
||||
}
|
||||
|
||||
@Test(expected = UnsupportedOperationException.class)
|
||||
public void fetchBlobDetails() {
|
||||
mySvc.fetchBlobDetails(null, null);
|
||||
}
|
||||
|
||||
@Test(expected = UnsupportedOperationException.class)
|
||||
public void writeBlob() {
|
||||
mySvc.writeBlob(null, null, null);
|
||||
}
|
||||
}
|
|
@ -1,5 +1,7 @@
|
|||
package ca.uhn.fhir.jpa.config;
|
||||
|
||||
import ca.uhn.fhir.jpa.binstore.IBinaryStorageSvc;
|
||||
import ca.uhn.fhir.jpa.binstore.MemoryBinaryStorageSvcImpl;
|
||||
import ca.uhn.fhir.jpa.util.CircularQueueCaptureQueriesListener;
|
||||
import ca.uhn.fhir.jpa.util.CurrentThreadCaptureQueriesListener;
|
||||
import ca.uhn.fhir.rest.server.interceptor.RequestValidatingInterceptor;
|
||||
|
@ -156,6 +158,11 @@ public class TestR4Config extends BaseJavaConfigR4 {
|
|||
return requestValidator;
|
||||
}
|
||||
|
||||
@Bean
|
||||
public IBinaryStorageSvc binaryStorage() {
|
||||
return new MemoryBinaryStorageSvcImpl();
|
||||
}
|
||||
|
||||
public static int getMaxThreads() {
|
||||
return ourMaxThreads;
|
||||
}
|
||||
|
|
|
@ -14,7 +14,7 @@ import ca.uhn.fhir.jpa.searchparam.registry.ISearchParamRegistry;
|
|||
import ca.uhn.fhir.jpa.term.VersionIndependentConcept;
|
||||
import ca.uhn.fhir.jpa.util.CircularQueueCaptureQueriesListener;
|
||||
import ca.uhn.fhir.jpa.util.ExpungeOptions;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.test.utilities.LoggingRule;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Bundle;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Bundle.Entry;
|
||||
|
|
|
@ -10,6 +10,7 @@ import ca.uhn.fhir.jpa.interceptor.PerformanceTracingLoggingInterceptor;
|
|||
import ca.uhn.fhir.jpa.model.entity.ModelConfig;
|
||||
import ca.uhn.fhir.jpa.model.entity.ResourceIndexedSearchParamString;
|
||||
import ca.uhn.fhir.jpa.model.entity.ResourceTable;
|
||||
import ca.uhn.fhir.jpa.provider.BinaryAccessProvider;
|
||||
import ca.uhn.fhir.jpa.provider.r4.JpaSystemProviderR4;
|
||||
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
|
||||
import ca.uhn.fhir.jpa.search.ISearchCoordinatorSvc;
|
||||
|
@ -95,6 +96,8 @@ public abstract class BaseJpaR4Test extends BaseJpaTest {
|
|||
@Qualifier("myAllergyIntoleranceDaoR4")
|
||||
protected IFhirResourceDao<AllergyIntolerance> myAllergyIntoleranceDao;
|
||||
@Autowired
|
||||
protected BinaryAccessProvider myBinaryAccessProvider;
|
||||
@Autowired
|
||||
protected ApplicationContext myAppCtx;
|
||||
@Autowired
|
||||
@Qualifier("myAppointmentDaoR4")
|
||||
|
|
|
@ -1354,7 +1354,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
|
|||
for (int i = 1; i <= 9; i++) {
|
||||
Patient p1 = new Patient();
|
||||
p1.getBirthDateElement().setValueAsString("1980-01-0" + i);
|
||||
String id1 = myPatientDao.create(p1).getId().toUnqualifiedVersionless().getValue();
|
||||
myPatientDao.create(p1).getId().toUnqualifiedVersionless().getValue();
|
||||
}
|
||||
|
||||
myDaoConfig.setSearchPreFetchThresholds(Lists.newArrayList(3, 6, 10));
|
||||
|
|
|
@ -1,6 +1,6 @@
|
|||
package ca.uhn.fhir.jpa.dao.r4;
|
||||
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.util.TestUtil;
|
||||
import com.google.common.collect.Lists;
|
||||
import org.hamcrest.Matchers;
|
||||
|
|
|
@ -60,7 +60,7 @@ import com.google.common.base.Charsets;
|
|||
|
||||
import ca.uhn.fhir.jpa.dao.DaoConfig;
|
||||
import ca.uhn.fhir.jpa.search.SearchCoordinatorSvcImpl;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.model.api.ExtensionDt;
|
||||
import ca.uhn.fhir.model.api.IResource;
|
||||
import ca.uhn.fhir.model.api.ResourceMetadataKeyEnum;
|
||||
|
@ -86,7 +86,6 @@ import ca.uhn.fhir.model.dstu2.resource.Location;
|
|||
import ca.uhn.fhir.model.dstu2.resource.Medication;
|
||||
import ca.uhn.fhir.model.dstu2.resource.MedicationAdministration;
|
||||
import ca.uhn.fhir.model.dstu2.resource.MedicationOrder;
|
||||
import ca.uhn.fhir.model.dstu2.resource.MessageHeader;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Observation;
|
||||
import ca.uhn.fhir.model.dstu2.resource.OperationOutcome;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Organization;
|
||||
|
|
|
@ -1,12 +1,11 @@
|
|||
package ca.uhn.fhir.jpa.provider.dstu3;
|
||||
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.server.exceptions.NotImplementedOperationException;
|
||||
import ca.uhn.fhir.util.TestUtil;
|
||||
import org.hl7.fhir.dstu3.model.Bundle;
|
||||
import org.hl7.fhir.dstu3.model.Bundle.BundleType;
|
||||
import org.hl7.fhir.dstu3.model.Composition;
|
||||
import org.hl7.fhir.dstu3.model.MessageHeader;
|
||||
import org.hl7.fhir.dstu3.model.Parameters;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
import org.junit.AfterClass;
|
||||
|
|
|
@ -1,6 +1,6 @@
|
|||
package ca.uhn.fhir.jpa.provider.dstu3;
|
||||
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
|
||||
import ca.uhn.fhir.util.TestUtil;
|
||||
|
|
|
@ -3,7 +3,7 @@ package ca.uhn.fhir.jpa.provider.dstu3;
|
|||
import ca.uhn.fhir.jpa.dao.DaoConfig;
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
|
||||
import ca.uhn.fhir.jpa.util.ExpungeOptions;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.PreconditionFailedException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ResourceGoneException;
|
||||
|
|
|
@ -1,11 +1,9 @@
|
|||
package ca.uhn.fhir.jpa.provider.r4;
|
||||
|
||||
import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
|
||||
import ca.uhn.fhir.jpa.config.WebsocketDispatcherConfig;
|
||||
import ca.uhn.fhir.jpa.dao.DaoRegistry;
|
||||
import ca.uhn.fhir.jpa.dao.data.ISearchDao;
|
||||
import ca.uhn.fhir.jpa.dao.r4.BaseJpaR4Test;
|
||||
import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor;
|
||||
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
|
||||
import ca.uhn.fhir.jpa.search.ISearchCoordinatorSvc;
|
||||
import ca.uhn.fhir.jpa.searchparam.registry.SearchParamRegistryR4;
|
||||
|
@ -101,6 +99,7 @@ public abstract class BaseResourceProviderR4Test extends BaseJpaR4Test {
|
|||
if (ourServer == null) {
|
||||
ourRestServer = new RestfulServer(myFhirCtx);
|
||||
ourRestServer.registerProviders(myResourceProviders.createProviders());
|
||||
ourRestServer.registerProvider(myBinaryAccessProvider);
|
||||
ourRestServer.getFhirContext().setNarrativeGenerator(new DefaultThymeleafNarrativeGenerator());
|
||||
ourRestServer.setDefaultResponseEncoding(EncodingEnum.XML);
|
||||
|
||||
|
|
|
@ -0,0 +1,317 @@
|
|||
package ca.uhn.fhir.jpa.provider.r4;
|
||||
|
||||
import ca.uhn.fhir.interceptor.api.HookParams;
|
||||
import ca.uhn.fhir.interceptor.api.IAnonymousInterceptor;
|
||||
import ca.uhn.fhir.interceptor.api.Pointcut;
|
||||
import ca.uhn.fhir.jpa.binstore.MemoryBinaryStorageSvcImpl;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.api.Constants;
|
||||
import com.google.common.base.Charsets;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.http.client.methods.CloseableHttpResponse;
|
||||
import org.apache.http.client.methods.HttpGet;
|
||||
import org.apache.http.client.methods.HttpPost;
|
||||
import org.apache.http.entity.ByteArrayEntity;
|
||||
import org.apache.http.entity.ContentType;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
import org.hl7.fhir.r4.model.Attachment;
|
||||
import org.hl7.fhir.r4.model.DocumentReference;
|
||||
import org.hl7.fhir.r4.model.StringType;
|
||||
import org.junit.After;
|
||||
import org.junit.Before;
|
||||
import org.junit.Test;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
|
||||
import java.io.IOException;
|
||||
|
||||
import static org.hamcrest.Matchers.containsString;
|
||||
import static org.hamcrest.Matchers.matchesPattern;
|
||||
import static org.junit.Assert.*;
|
||||
import static org.mockito.Mockito.*;
|
||||
|
||||
public class BinaryAccessProviderR4Test extends BaseResourceProviderR4Test {
|
||||
|
||||
public static final byte[] SOME_BYTES = {1, 2, 3, 4, 5, 6, 7, 8, 7, 6, 5, 4, 3, 2, 1};
|
||||
public static final byte[] SOME_BYTES_2 = {5, 5, 5, 6};
|
||||
private static final Logger ourLog = LoggerFactory.getLogger(BinaryAccessProviderR4Test.class);
|
||||
|
||||
@Autowired
|
||||
private MemoryBinaryStorageSvcImpl myStorageSvc;
|
||||
|
||||
@Override
|
||||
@Before
|
||||
public void before() throws Exception {
|
||||
super.before();
|
||||
myStorageSvc.setMinSize(10);
|
||||
}
|
||||
|
||||
@Override
|
||||
@After
|
||||
public void after() throws Exception {
|
||||
super.after();
|
||||
myStorageSvc.setMinSize(0);
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testRead() throws IOException {
|
||||
IIdType id = createDocumentReference(true);
|
||||
|
||||
IAnonymousInterceptor interceptor = mock(IAnonymousInterceptor.class);
|
||||
myInterceptorRegistry.registerAnonymousInterceptor(Pointcut.STORAGE_PRESHOW_RESOURCES, interceptor);
|
||||
doAnswer(t -> {
|
||||
Pointcut pointcut = t.getArgument(0, Pointcut.class);
|
||||
HookParams params = t.getArgument(1, HookParams.class);
|
||||
ourLog.info("Interceptor invoked with pointcut {} and params {}", pointcut, params);
|
||||
return null;
|
||||
}).when(interceptor).invoke(any(), any());
|
||||
|
||||
// Read it back using the operation
|
||||
|
||||
String path = ourServerBase +
|
||||
"/DocumentReference/" + id.getIdPart() + "/" +
|
||||
JpaConstants.OPERATION_BINARY_ACCESS_READ +
|
||||
"?path=DocumentReference.content.attachment";
|
||||
HttpGet get = new HttpGet(path);
|
||||
try (CloseableHttpResponse resp = ourHttpClient.execute(get)) {
|
||||
|
||||
assertEquals(200, resp.getStatusLine().getStatusCode());
|
||||
assertEquals("image/png", resp.getEntity().getContentType().getValue());
|
||||
assertEquals(SOME_BYTES.length, resp.getEntity().getContentLength());
|
||||
|
||||
byte[] actualBytes = IOUtils.toByteArray(resp.getEntity().getContent());
|
||||
assertArrayEquals(SOME_BYTES, actualBytes);
|
||||
}
|
||||
|
||||
verify(interceptor, times(1)).invoke(eq(Pointcut.STORAGE_PRESHOW_RESOURCES), any());
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testReadSecondInstance() throws IOException {
|
||||
IIdType id = createDocumentReference(true);
|
||||
|
||||
IAnonymousInterceptor interceptor = mock(IAnonymousInterceptor.class);
|
||||
myInterceptorRegistry.registerAnonymousInterceptor(Pointcut.STORAGE_PRESHOW_RESOURCES, interceptor);
|
||||
|
||||
// Read it back using the operation
|
||||
|
||||
String path = ourServerBase +
|
||||
"/DocumentReference/" + id.getIdPart() + "/" +
|
||||
JpaConstants.OPERATION_BINARY_ACCESS_READ +
|
||||
"?path=DocumentReference.content[1].attachment";
|
||||
HttpGet get = new HttpGet(path);
|
||||
try (CloseableHttpResponse resp = ourHttpClient.execute(get)) {
|
||||
|
||||
assertEquals(200, resp.getStatusLine().getStatusCode());
|
||||
assertEquals("image/gif", resp.getEntity().getContentType().getValue());
|
||||
assertEquals(SOME_BYTES_2.length, resp.getEntity().getContentLength());
|
||||
|
||||
byte[] actualBytes = IOUtils.toByteArray(resp.getEntity().getContent());
|
||||
assertArrayEquals(SOME_BYTES_2, actualBytes);
|
||||
}
|
||||
|
||||
verify(interceptor, times(1)).invoke(eq(Pointcut.STORAGE_PRESHOW_RESOURCES), any());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testReadNoPath() throws IOException {
|
||||
IIdType id = createDocumentReference(true);
|
||||
|
||||
String path = ourServerBase +
|
||||
"/DocumentReference/" + id.getIdPart() + "/" +
|
||||
JpaConstants.OPERATION_BINARY_ACCESS_READ;
|
||||
HttpGet get = new HttpGet(path);
|
||||
try (CloseableHttpResponse resp = ourHttpClient.execute(get)) {
|
||||
|
||||
assertEquals(400, resp.getStatusLine().getStatusCode());
|
||||
String response = IOUtils.toString(resp.getEntity().getContent(), Charsets.UTF_8);
|
||||
assertThat(response, containsString("No path specified"));
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testReadNoData() throws IOException {
|
||||
IIdType id = createDocumentReference(false);
|
||||
|
||||
String path = ourServerBase +
|
||||
"/DocumentReference/" + id.getIdPart() + "/" +
|
||||
JpaConstants.OPERATION_BINARY_ACCESS_READ +
|
||||
"?path=DocumentReference.content.attachment";
|
||||
|
||||
HttpGet get = new HttpGet(path);
|
||||
try (CloseableHttpResponse resp = ourHttpClient.execute(get)) {
|
||||
|
||||
assertEquals(400, resp.getStatusLine().getStatusCode());
|
||||
String response = IOUtils.toString(resp.getEntity().getContent(), Charsets.UTF_8);
|
||||
assertThat(response, matchesPattern(".*The resource with ID DocumentReference/[0-9]+ has no data at path.*"));
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testReadUnknownBlobId() throws IOException {
|
||||
IIdType id = createDocumentReference(false);
|
||||
|
||||
DocumentReference dr = ourClient.read().resource(DocumentReference.class).withId(id).execute();
|
||||
dr.getContentFirstRep()
|
||||
.getAttachment()
|
||||
.addExtension(JpaConstants.EXT_ATTACHMENT_EXTERNAL_BINARY_ID, new StringType("AAAAA"));
|
||||
ourClient.update().resource(dr).execute();
|
||||
|
||||
String path = ourServerBase +
|
||||
"/DocumentReference/" + id.getIdPart() + "/" +
|
||||
JpaConstants.OPERATION_BINARY_ACCESS_READ +
|
||||
"?path=DocumentReference.content.attachment";
|
||||
HttpGet get = new HttpGet(path);
|
||||
try (CloseableHttpResponse resp = ourHttpClient.execute(get)) {
|
||||
|
||||
assertEquals(400, resp.getStatusLine().getStatusCode());
|
||||
String response = IOUtils.toString(resp.getEntity().getContent(), Charsets.UTF_8);
|
||||
assertThat(response, matchesPattern(".*Can not find the requested binary content. It may have been deleted.*"));
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
/**
|
||||
* Stores a binary large enough that it should live in binary storage
|
||||
*/
|
||||
@Test
|
||||
public void testWriteLarge() throws IOException {
|
||||
IIdType id = createDocumentReference(false);
|
||||
|
||||
IAnonymousInterceptor interceptor = mock(IAnonymousInterceptor.class);
|
||||
myInterceptorRegistry.registerAnonymousInterceptor(Pointcut.STORAGE_PRESHOW_RESOURCES, interceptor);
|
||||
myInterceptorRegistry.registerAnonymousInterceptor(Pointcut.STORAGE_PRESTORAGE_RESOURCE_CREATED, interceptor);
|
||||
myInterceptorRegistry.registerAnonymousInterceptor(Pointcut.STORAGE_PRESTORAGE_RESOURCE_UPDATED, interceptor);
|
||||
|
||||
// Read it back using the operation
|
||||
|
||||
String path = ourServerBase +
|
||||
"/DocumentReference/" + id.getIdPart() + "/" +
|
||||
JpaConstants.OPERATION_BINARY_ACCESS_WRITE +
|
||||
"?path=DocumentReference.content.attachment";
|
||||
HttpPost post = new HttpPost(path);
|
||||
post.setEntity(new ByteArrayEntity(SOME_BYTES, ContentType.IMAGE_JPEG));
|
||||
post.addHeader("Accept", "application/fhir+json; _pretty=true");
|
||||
String attachmentId;
|
||||
try (CloseableHttpResponse resp = ourHttpClient.execute(post)) {
|
||||
|
||||
assertEquals(200, resp.getStatusLine().getStatusCode());
|
||||
assertThat(resp.getEntity().getContentType().getValue(), containsString("application/fhir+json"));
|
||||
String response = IOUtils.toString(resp.getEntity().getContent(), Constants.CHARSET_UTF8);
|
||||
ourLog.info("Response: {}", response);
|
||||
|
||||
DocumentReference ref = myFhirCtx.newJsonParser().parseResource(DocumentReference.class, response);
|
||||
|
||||
Attachment attachment = ref.getContentFirstRep().getAttachment();
|
||||
assertEquals(ContentType.IMAGE_JPEG.getMimeType(), attachment.getContentType());
|
||||
assertEquals(15, attachment.getSize());
|
||||
assertEquals(null, attachment.getData());
|
||||
assertEquals("2", ref.getMeta().getVersionId());
|
||||
attachmentId = attachment.getExtensionString(JpaConstants.EXT_ATTACHMENT_EXTERNAL_BINARY_ID);
|
||||
assertThat(attachmentId, matchesPattern("[a-zA-Z0-9]{100}"));
|
||||
|
||||
}
|
||||
|
||||
verify(interceptor, timeout(5000).times(1)).invoke(eq(Pointcut.STORAGE_PRESHOW_RESOURCES), any());
|
||||
verify(interceptor, timeout(5000).times(1)).invoke(eq(Pointcut.STORAGE_PRESTORAGE_RESOURCE_UPDATED), any());
|
||||
verifyNoMoreInteractions(interceptor);
|
||||
|
||||
// Read it back using the operation
|
||||
|
||||
path = ourServerBase +
|
||||
"/DocumentReference/" + id.getIdPart() + "/" +
|
||||
JpaConstants.OPERATION_BINARY_ACCESS_READ +
|
||||
"?path=DocumentReference.content.attachment";
|
||||
HttpGet get = new HttpGet(path);
|
||||
try (CloseableHttpResponse resp = ourHttpClient.execute(get)) {
|
||||
|
||||
assertEquals(200, resp.getStatusLine().getStatusCode());
|
||||
assertEquals("image/jpeg", resp.getEntity().getContentType().getValue());
|
||||
assertEquals(SOME_BYTES.length, resp.getEntity().getContentLength());
|
||||
|
||||
byte[] actualBytes = IOUtils.toByteArray(resp.getEntity().getContent());
|
||||
assertArrayEquals(SOME_BYTES, actualBytes);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
/**
|
||||
* Stores a binary small enough that it shouldn't live in binary storage
|
||||
*/
|
||||
@Test
|
||||
public void testWriteSmall() throws IOException {
|
||||
IIdType id = createDocumentReference(false);
|
||||
|
||||
IAnonymousInterceptor interceptor = mock(IAnonymousInterceptor.class);
|
||||
myInterceptorRegistry.registerAnonymousInterceptor(Pointcut.STORAGE_PRESHOW_RESOURCES, interceptor);
|
||||
myInterceptorRegistry.registerAnonymousInterceptor(Pointcut.STORAGE_PRESTORAGE_RESOURCE_CREATED, interceptor);
|
||||
myInterceptorRegistry.registerAnonymousInterceptor(Pointcut.STORAGE_PRESTORAGE_RESOURCE_UPDATED, interceptor);
|
||||
|
||||
// Read it back using the operation
|
||||
|
||||
String path = ourServerBase +
|
||||
"/DocumentReference/" + id.getIdPart() + "/" +
|
||||
JpaConstants.OPERATION_BINARY_ACCESS_WRITE +
|
||||
"?path=DocumentReference.content.attachment";
|
||||
HttpPost post = new HttpPost(path);
|
||||
post.setEntity(new ByteArrayEntity(SOME_BYTES_2, ContentType.IMAGE_JPEG));
|
||||
post.addHeader("Accept", "application/fhir+json; _pretty=true");
|
||||
String attachmentId;
|
||||
try (CloseableHttpResponse resp = ourHttpClient.execute(post)) {
|
||||
|
||||
assertEquals(200, resp.getStatusLine().getStatusCode());
|
||||
assertThat(resp.getEntity().getContentType().getValue(), containsString("application/fhir+json"));
|
||||
String response = IOUtils.toString(resp.getEntity().getContent(), Constants.CHARSET_UTF8);
|
||||
ourLog.info("Response: {}", response);
|
||||
|
||||
DocumentReference ref = myFhirCtx.newJsonParser().parseResource(DocumentReference.class, response);
|
||||
|
||||
Attachment attachment = ref.getContentFirstRep().getAttachment();
|
||||
assertEquals(ContentType.IMAGE_JPEG.getMimeType(), attachment.getContentType());
|
||||
assertEquals(4, attachment.getSize());
|
||||
assertArrayEquals(SOME_BYTES_2, attachment.getData());
|
||||
assertEquals("2", ref.getMeta().getVersionId());
|
||||
attachmentId = attachment.getExtensionString(JpaConstants.EXT_ATTACHMENT_EXTERNAL_BINARY_ID);
|
||||
assertEquals(null, attachmentId);
|
||||
|
||||
}
|
||||
|
||||
verify(interceptor, timeout(5000).times(1)).invoke(eq(Pointcut.STORAGE_PRESHOW_RESOURCES), any());
|
||||
verify(interceptor, timeout(5000).times(1)).invoke(eq(Pointcut.STORAGE_PRESTORAGE_RESOURCE_UPDATED), any());
|
||||
verifyNoMoreInteractions(interceptor);
|
||||
|
||||
}
|
||||
|
||||
private IIdType createDocumentReference(boolean theSetData) {
|
||||
DocumentReference documentReference = new DocumentReference();
|
||||
Attachment attachment = documentReference
|
||||
.addContent()
|
||||
.getAttachment()
|
||||
.setContentType("image/png");
|
||||
if (theSetData) {
|
||||
attachment.setData(SOME_BYTES);
|
||||
}
|
||||
attachment = documentReference
|
||||
.addContent()
|
||||
.getAttachment()
|
||||
.setContentType("image/gif");
|
||||
if (theSetData) {
|
||||
attachment.setData(SOME_BYTES_2);
|
||||
}
|
||||
return ourClient.create().resource(documentReference).execute().getId().toUnqualifiedVersionless();
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
}
|
|
@ -2,7 +2,7 @@ package ca.uhn.fhir.jpa.provider.r4;
|
|||
|
||||
import ca.uhn.fhir.jpa.dao.DaoConfig;
|
||||
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.server.exceptions.MethodNotAllowedException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ResourceGoneException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
|
||||
|
|
|
@ -1,9 +1,8 @@
|
|||
package ca.uhn.fhir.jpa.provider.r4;
|
||||
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.server.exceptions.NotImplementedOperationException;
|
||||
import ca.uhn.fhir.util.TestUtil;
|
||||
import org.hl7.fhir.r4.model.MessageHeader;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
import org.hl7.fhir.r4.model.Bundle;
|
||||
import org.hl7.fhir.r4.model.Bundle.BundleType;
|
||||
|
|
|
@ -1,7 +1,7 @@
|
|||
package ca.uhn.fhir.jpa.provider.r4;
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.r4.FhirResourceDaoR4TerminologyTest;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
|
||||
import ca.uhn.fhir.util.TestUtil;
|
||||
|
|
|
@ -1,6 +1,6 @@
|
|||
package ca.uhn.fhir.jpa.provider.r4;
|
||||
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
|
||||
import ca.uhn.fhir.util.TestUtil;
|
||||
|
|
|
@ -5,8 +5,7 @@ import ca.uhn.fhir.jpa.dao.DaoConfig;
|
|||
import ca.uhn.fhir.jpa.entity.Search;
|
||||
import ca.uhn.fhir.jpa.model.entity.ResourceHistoryTable;
|
||||
import ca.uhn.fhir.jpa.search.SearchCoordinatorSvcImpl;
|
||||
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.util.TestUtil;
|
||||
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
|
||||
import ca.uhn.fhir.model.primitive.InstantDt;
|
||||
|
@ -15,7 +14,6 @@ import ca.uhn.fhir.parser.IParser;
|
|||
import ca.uhn.fhir.parser.StrictErrorHandler;
|
||||
import ca.uhn.fhir.rest.api.Constants;
|
||||
import ca.uhn.fhir.rest.api.*;
|
||||
import ca.uhn.fhir.rest.api.server.IBundleProvider;
|
||||
import ca.uhn.fhir.rest.client.api.IClientInterceptor;
|
||||
import ca.uhn.fhir.rest.client.api.IGenericClient;
|
||||
import ca.uhn.fhir.rest.client.api.IHttpRequest;
|
||||
|
@ -72,7 +70,6 @@ import java.nio.charset.StandardCharsets;
|
|||
import java.util.*;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import static ca.uhn.fhir.jpa.util.TestUtil.sleepAtLeast;
|
||||
import static ca.uhn.fhir.jpa.util.TestUtil.sleepOneClick;
|
||||
import static org.apache.commons.lang3.StringUtils.isNotBlank;
|
||||
import static org.hamcrest.Matchers.*;
|
||||
|
|
|
@ -1,11 +1,10 @@
|
|||
package ca.uhn.fhir.jpa.subscription.email;
|
||||
|
||||
import ca.uhn.fhir.jpa.dao.DaoConfig;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.provider.dstu3.BaseResourceProviderDstu3Test;
|
||||
import ca.uhn.fhir.jpa.subscription.SubscriptionTestUtil;
|
||||
import ca.uhn.fhir.jpa.subscription.module.cache.SubscriptionConstants;
|
||||
import ca.uhn.fhir.rest.api.MethodOutcome;
|
||||
import com.google.common.collect.Lists;
|
||||
import com.icegreen.greenmail.store.FolderException;
|
||||
import com.icegreen.greenmail.util.GreenMail;
|
||||
import com.icegreen.greenmail.util.ServerSetup;
|
||||
|
@ -155,10 +154,10 @@ public class EmailSubscriptionDstu3Test extends BaseResourceProviderDstu3Test {
|
|||
Assert.assertNotNull(subscriptionTemp);
|
||||
|
||||
subscriptionTemp.getChannel().addExtension()
|
||||
.setUrl(SubscriptionConstants.EXT_SUBSCRIPTION_EMAIL_FROM)
|
||||
.setUrl(JpaConstants.EXT_SUBSCRIPTION_EMAIL_FROM)
|
||||
.setValue(new StringType("mailto:myfrom@from.com"));
|
||||
subscriptionTemp.getChannel().addExtension()
|
||||
.setUrl(SubscriptionConstants.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE)
|
||||
.setUrl(JpaConstants.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE)
|
||||
.setValue(new StringType("This is a subject"));
|
||||
subscriptionTemp.setIdElement(subscriptionTemp.getIdElement().toUnqualifiedVersionless());
|
||||
|
||||
|
@ -201,10 +200,10 @@ public class EmailSubscriptionDstu3Test extends BaseResourceProviderDstu3Test {
|
|||
Subscription subscriptionTemp = ourClient.read(Subscription.class, sub1.getId());
|
||||
Assert.assertNotNull(subscriptionTemp);
|
||||
subscriptionTemp.getChannel().addExtension()
|
||||
.setUrl(SubscriptionConstants.EXT_SUBSCRIPTION_EMAIL_FROM)
|
||||
.setUrl(JpaConstants.EXT_SUBSCRIPTION_EMAIL_FROM)
|
||||
.setValue(new StringType("myfrom@from.com"));
|
||||
subscriptionTemp.getChannel().addExtension()
|
||||
.setUrl(SubscriptionConstants.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE)
|
||||
.setUrl(JpaConstants.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE)
|
||||
.setValue(new StringType("This is a subject"));
|
||||
subscriptionTemp.setIdElement(subscriptionTemp.getIdElement().toUnqualifiedVersionless());
|
||||
|
||||
|
|
|
@ -3,10 +3,10 @@ package ca.uhn.fhir.jpa.subscription.resthook;
|
|||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.interceptor.api.IInterceptorService;
|
||||
import ca.uhn.fhir.jpa.dao.DaoConfig;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.provider.dstu3.BaseResourceProviderDstu3Test;
|
||||
import ca.uhn.fhir.jpa.subscription.NotificationServlet;
|
||||
import ca.uhn.fhir.jpa.subscription.SubscriptionTestUtil;
|
||||
import ca.uhn.fhir.jpa.subscription.module.cache.SubscriptionConstants;
|
||||
import ca.uhn.fhir.jpa.subscription.module.interceptor.SubscriptionDebugLogInterceptor;
|
||||
import ca.uhn.fhir.jpa.subscription.module.matcher.SubscriptionMatchingStrategy;
|
||||
import ca.uhn.fhir.rest.annotation.Create;
|
||||
|
@ -158,7 +158,7 @@ public class RestHookTestDstu3Test extends BaseResourceProviderDstu3Test {
|
|||
String databaseCriteria = "Observation?code=17861-6&context.type=IHD";
|
||||
Subscription subscription = createSubscription(databaseCriteria, null, ourNotificationListenerServer);
|
||||
List<Coding> tag = subscription.getMeta().getTag();
|
||||
assertEquals(SubscriptionConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.get(0).getSystem());
|
||||
assertEquals(JpaConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.get(0).getSystem());
|
||||
assertEquals(SubscriptionMatchingStrategy.DATABASE.toString(), tag.get(0).getCode());
|
||||
}
|
||||
|
||||
|
@ -168,7 +168,7 @@ public class RestHookTestDstu3Test extends BaseResourceProviderDstu3Test {
|
|||
Subscription subscription = createSubscription(inMemoryCriteria, null, ourNotificationListenerServer);
|
||||
ourLog.info(myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(subscription));
|
||||
List<Coding> tag = subscription.getMeta().getTag();
|
||||
assertEquals(SubscriptionConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.get(0).getSystem());
|
||||
assertEquals(JpaConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.get(0).getSystem());
|
||||
assertEquals(SubscriptionMatchingStrategy.IN_MEMORY.toString(), tag.get(0).getCode());
|
||||
}
|
||||
|
||||
|
@ -468,7 +468,7 @@ public class RestHookTestDstu3Test extends BaseResourceProviderDstu3Test {
|
|||
List<Coding> tags = subscriptionOrig.getMeta().getTag();
|
||||
assertEquals(1, tags.size());
|
||||
Coding tag = tags.get(0);
|
||||
assertEquals(SubscriptionConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.getSystem());
|
||||
assertEquals(JpaConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.getSystem());
|
||||
assertEquals(SubscriptionMatchingStrategy.IN_MEMORY.toString(), tag.getCode());
|
||||
assertEquals("In-memory", tag.getDisplay());
|
||||
|
||||
|
@ -480,7 +480,7 @@ public class RestHookTestDstu3Test extends BaseResourceProviderDstu3Test {
|
|||
tags = subscriptionActivated.getMeta().getTag();
|
||||
assertEquals(1, tags.size());
|
||||
tag = tags.get(0);
|
||||
assertEquals(SubscriptionConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.getSystem());
|
||||
assertEquals(JpaConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.getSystem());
|
||||
assertEquals(SubscriptionMatchingStrategy.IN_MEMORY.toString(), tag.getCode());
|
||||
assertEquals("In-memory", tag.getDisplay());
|
||||
}
|
||||
|
@ -495,7 +495,7 @@ public class RestHookTestDstu3Test extends BaseResourceProviderDstu3Test {
|
|||
List<Coding> tags = subscriptionOrig.getMeta().getTag();
|
||||
assertEquals(1, tags.size());
|
||||
Coding tag = tags.get(0);
|
||||
assertEquals(SubscriptionConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.getSystem());
|
||||
assertEquals(JpaConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.getSystem());
|
||||
assertEquals(SubscriptionMatchingStrategy.DATABASE.toString(), tag.getCode());
|
||||
assertEquals("Database", tag.getDisplay());
|
||||
|
||||
|
@ -507,7 +507,7 @@ public class RestHookTestDstu3Test extends BaseResourceProviderDstu3Test {
|
|||
tags = subscription.getMeta().getTag();
|
||||
assertEquals(1, tags.size());
|
||||
tag = tags.get(0);
|
||||
assertEquals(SubscriptionConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.getSystem());
|
||||
assertEquals(JpaConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY, tag.getSystem());
|
||||
assertEquals(SubscriptionMatchingStrategy.DATABASE.toString(), tag.getCode());
|
||||
assertEquals("Database", tag.getDisplay());
|
||||
}
|
||||
|
|
|
@ -1,13 +1,11 @@
|
|||
package ca.uhn.fhir.jpa.subscription.resthook;
|
||||
|
||||
import ca.uhn.fhir.jpa.config.StoppableSubscriptionDeliveringRestHookSubscriber;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.subscription.BaseSubscriptionsR4Test;
|
||||
import ca.uhn.fhir.jpa.subscription.module.cache.SubscriptionConstants;
|
||||
import ca.uhn.fhir.rest.api.CacheControlDirective;
|
||||
import ca.uhn.fhir.rest.api.Constants;
|
||||
import ca.uhn.fhir.rest.api.MethodOutcome;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.PreconditionFailedException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
|
||||
import org.hl7.fhir.instance.model.api.IBaseBundle;
|
||||
import org.hl7.fhir.r4.model.*;
|
||||
|
@ -302,7 +300,7 @@ public class RestHookTestR4Test extends BaseSubscriptionsR4Test {
|
|||
|
||||
subscription1
|
||||
.getChannel()
|
||||
.addExtension(SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_STRIP_VERSION_IDS, new BooleanType("true"));
|
||||
.addExtension(JpaConstants.EXT_SUBSCRIPTION_RESTHOOK_STRIP_VERSION_IDS, new BooleanType("true"));
|
||||
ourLog.info("** About to update subscription");
|
||||
|
||||
int modCount = myCountingInterceptor.getSentCount();
|
||||
|
@ -378,7 +376,7 @@ public class RestHookTestR4Test extends BaseSubscriptionsR4Test {
|
|||
Subscription subscription = newSubscription(criteria1, payload);
|
||||
subscription
|
||||
.getChannel()
|
||||
.addExtension(SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION, new BooleanType("true"));
|
||||
.addExtension(JpaConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION, new BooleanType("true"));
|
||||
ourClient.create().resource(subscription).execute();
|
||||
|
||||
waitForActivatedSubscriptionCount(1);
|
||||
|
|
|
@ -6,7 +6,7 @@ import ca.uhn.fhir.jpa.provider.SubscriptionTriggeringProvider;
|
|||
import ca.uhn.fhir.jpa.provider.dstu3.BaseResourceProviderDstu3Test;
|
||||
import ca.uhn.fhir.jpa.subscription.SubscriptionTestUtil;
|
||||
import ca.uhn.fhir.jpa.subscription.SubscriptionTriggeringSvcImpl;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.annotation.Create;
|
||||
import ca.uhn.fhir.rest.annotation.ResourceParam;
|
||||
import ca.uhn.fhir.rest.annotation.Update;
|
||||
|
|
|
@ -33,6 +33,7 @@ public class RenameColumnTask extends BaseTableTask<RenameColumnTask> {
|
|||
private static final Logger ourLog = LoggerFactory.getLogger(RenameColumnTask.class);
|
||||
private String myOldName;
|
||||
private String myNewName;
|
||||
private boolean myAllowNeitherColumnToExist;
|
||||
|
||||
public void setOldName(String theOldName) {
|
||||
Validate.notBlank(theOldName);
|
||||
|
@ -53,6 +54,9 @@ public class RenameColumnTask extends BaseTableTask<RenameColumnTask> {
|
|||
throw new SQLException("Can not rename " + getTableName() + "." + myOldName + " to " + myNewName + " because both columns exist!");
|
||||
}
|
||||
if (!haveOldName && !haveNewName) {
|
||||
if (isAllowNeitherColumnToExist()) {
|
||||
return;
|
||||
}
|
||||
throw new SQLException("Can not rename " + getTableName() + "." + myOldName + " to " + myNewName + " because neither column exists!");
|
||||
}
|
||||
if (haveNewName) {
|
||||
|
@ -89,4 +93,12 @@ public class RenameColumnTask extends BaseTableTask<RenameColumnTask> {
|
|||
executeSql(getTableName(), sql);
|
||||
|
||||
}
|
||||
|
||||
public void setAllowNeitherColumnToExist(boolean theAllowNeitherColumnToExist) {
|
||||
myAllowNeitherColumnToExist = theAllowNeitherColumnToExist;
|
||||
}
|
||||
|
||||
public boolean isAllowNeitherColumnToExist() {
|
||||
return myAllowNeitherColumnToExist;
|
||||
}
|
||||
}
|
||||
|
|
|
@ -80,6 +80,16 @@ public class HapiFhirJpaMigrationTasks extends BaseMigrationTasks<VersionEnum> {
|
|||
.renameColumn("mySystemVersion", "SYSTEM_VERSION")
|
||||
.renameColumn("myValueSet", "VALUESET_URL");
|
||||
|
||||
version.onTable("TRM_VALUESET")
|
||||
.renameColumn("NAME", "VSNAME", true);
|
||||
|
||||
version.onTable("TRM_VALUESET_CONCEPT")
|
||||
.renameColumn("CODE", "CODEVAL", true)
|
||||
.renameColumn("SYSTEM", "SYSTEM_URL", true);
|
||||
|
||||
version.onTable("TRM_CONCEPT")
|
||||
.renameColumn("CODE", "CODEVAL");
|
||||
|
||||
// TermValueSet
|
||||
version.startSectionWithMessage("Processing table: TRM_VALUESET");
|
||||
version.addIdGenerator("SEQ_VALUESET_PID");
|
||||
|
|
|
@ -168,10 +168,15 @@ public class BaseMigrationTasks<T extends Enum> {
|
|||
}
|
||||
|
||||
public BuilderWithTableName renameColumn(String theOldName, String theNewName) {
|
||||
return renameColumn(theOldName, theNewName, false);
|
||||
}
|
||||
|
||||
public BuilderWithTableName renameColumn(String theOldName, String theNewName, boolean theAllowNeitherColumnToExist) {
|
||||
RenameColumnTask task = new RenameColumnTask();
|
||||
task.setTableName(myTableName);
|
||||
task.setOldName(theOldName);
|
||||
task.setNewName(theNewName);
|
||||
task.setAllowNeitherColumnToExist(theAllowNeitherColumnToExist);
|
||||
addTask(task);
|
||||
return this;
|
||||
}
|
||||
|
|
|
@ -45,7 +45,7 @@ public class RenameColumnTaskTest extends BaseTest {
|
|||
}
|
||||
|
||||
@Test
|
||||
public void testNeitherColumnExists() throws SQLException {
|
||||
public void testNeitherColumnExists() {
|
||||
executeSql("create table SOMETABLE (PID bigint not null)");
|
||||
|
||||
RenameColumnTask task = new RenameColumnTask();
|
||||
|
@ -65,7 +65,21 @@ public class RenameColumnTaskTest extends BaseTest {
|
|||
}
|
||||
|
||||
@Test
|
||||
public void testBothColumnsExist() throws SQLException {
|
||||
public void testNeitherColumnExistsButAllowed() {
|
||||
executeSql("create table SOMETABLE (PID bigint not null)");
|
||||
|
||||
RenameColumnTask task = new RenameColumnTask();
|
||||
task.setTableName("SOMETABLE");
|
||||
task.setOldName("myTextCol");
|
||||
task.setNewName("TEXTCOL");
|
||||
task.setAllowNeitherColumnToExist(true);
|
||||
getMigrator().addTask(task);
|
||||
|
||||
getMigrator().migrate();
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testBothColumnsExist() {
|
||||
executeSql("create table SOMETABLE (PID bigint not null, PID2 bigint)");
|
||||
|
||||
RenameColumnTask task = new RenameColumnTask();
|
||||
|
|
|
@ -21,6 +21,7 @@ package ca.uhn.fhir.jpa.model.entity;
|
|||
*/
|
||||
|
||||
import ca.uhn.fhir.model.api.IQueryParameterType;
|
||||
import ca.uhn.fhir.rest.api.Constants;
|
||||
import ca.uhn.fhir.util.UrlUtil;
|
||||
import com.google.common.base.Charsets;
|
||||
import com.google.common.hash.HashCode;
|
||||
|
@ -64,7 +65,7 @@ public abstract class BaseResourceIndexedSearchParam extends BaseResourceIndex {
|
|||
private Long myResourcePid;
|
||||
|
||||
@Field()
|
||||
@Column(name = "RES_TYPE", nullable = false)
|
||||
@Column(name = "RES_TYPE", nullable = false, length = Constants.MAX_RESOURCE_NAME_LENGTH)
|
||||
private String myResourceType;
|
||||
|
||||
@Field()
|
||||
|
|
|
@ -47,12 +47,13 @@ public class ResourceIndexedSearchParamUri extends BaseResourceIndexedSearchPara
|
|||
/*
|
||||
* Note that MYSQL chokes on unique indexes for lengths > 255 so be careful here
|
||||
*/
|
||||
public static final int MAX_LENGTH = 255;
|
||||
public static final int MAX_LENGTH = 254;
|
||||
|
||||
private static final long serialVersionUID = 1L;
|
||||
@Column(name = "SP_URI", nullable = true, length = MAX_LENGTH)
|
||||
@Field()
|
||||
public String myUri;
|
||||
|
||||
@Id
|
||||
@SequenceGenerator(name = "SEQ_SPIDX_URI", sequenceName = "SEQ_SPIDX_URI")
|
||||
@GeneratedValue(strategy = GenerationType.AUTO, generator = "SEQ_SPIDX_URI")
|
||||
|
|
|
@ -1,8 +1,8 @@
|
|||
package ca.uhn.fhir.jpa.util;
|
||||
package ca.uhn.fhir.jpa.model.util;
|
||||
|
||||
/*-
|
||||
* #%L
|
||||
* HAPI FHIR JPA Server
|
||||
* HAPI FHIR Model
|
||||
* %%
|
||||
* Copyright (C) 2014 - 2019 University Health Network
|
||||
* %%
|
||||
|
@ -147,4 +147,69 @@ public class JpaConstants {
|
|||
* Operation name for the "$snapshot" operation
|
||||
*/
|
||||
public static final String OPERATION_SNAPSHOT = "$snapshot";
|
||||
|
||||
/**
|
||||
* Operation name for the "$binary-access" operation
|
||||
*/
|
||||
public static final String OPERATION_BINARY_ACCESS_READ = "$binary-access-read";
|
||||
|
||||
/**
|
||||
* Operation name for the "$binary-access" operation
|
||||
*/
|
||||
public static final String OPERATION_BINARY_ACCESS_WRITE = "$binary-access-write";
|
||||
|
||||
/**
|
||||
* <p>
|
||||
* This extension should be of type <code>string</code> and should be
|
||||
* placed on the <code>Subscription.channel</code> element
|
||||
* </p>
|
||||
*/
|
||||
public static final String EXT_SUBSCRIPTION_SUBJECT_TEMPLATE = "http://hapifhir.io/fhir/StructureDefinition/subscription-email-subject-template";
|
||||
|
||||
/**
|
||||
* This extension URL indicates whether a REST HOOK delivery should
|
||||
* include the version ID when delivering.
|
||||
* <p>
|
||||
* This extension should be of type <code>boolean</code> and should be
|
||||
* placed on the <code>Subscription.channel</code> element.
|
||||
* </p>
|
||||
*/
|
||||
public static final String EXT_SUBSCRIPTION_RESTHOOK_STRIP_VERSION_IDS = "http://hapifhir.io/fhir/StructureDefinition/subscription-resthook-strip-version-ids";
|
||||
|
||||
/**
|
||||
* This extension URL indicates whether a REST HOOK delivery should
|
||||
* reload the resource and deliver the latest version always. This
|
||||
* could be useful for example if a resource which triggers a
|
||||
* subscription gets updated many times in short succession and there
|
||||
* is no value in delivering the older versions.
|
||||
* <p>
|
||||
* Note that if the resource is now deleted, this may cause
|
||||
* the delivery to be cancelled altogether.
|
||||
* </p>
|
||||
*
|
||||
* <p>
|
||||
* This extension should be of type <code>boolean</code> and should be
|
||||
* placed on the <code>Subscription.channel</code> element.
|
||||
* </p>
|
||||
*/
|
||||
public static final String EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION = "http://hapifhir.io/fhir/StructureDefinition/subscription-resthook-deliver-latest-version";
|
||||
|
||||
/**
|
||||
* Indicate which strategy will be used to match this subscription
|
||||
*/
|
||||
public static final String EXT_SUBSCRIPTION_MATCHING_STRATEGY = "http://hapifhir.io/fhir/StructureDefinition/subscription-matching-strategy";
|
||||
|
||||
/**
|
||||
* <p>
|
||||
* This extension should be of type <code>string</code> and should be
|
||||
* placed on the <code>Subscription.channel</code> element
|
||||
* </p>
|
||||
*/
|
||||
public static final String EXT_SUBSCRIPTION_EMAIL_FROM = "http://hapifhir.io/fhir/StructureDefinition/subscription-email-from";
|
||||
|
||||
/**
|
||||
* Extension ID for external binary references
|
||||
*/
|
||||
public static final String EXT_ATTACHMENT_EXTERNAL_BINARY_ID = "http://hapifhir.io/fhir/StructureDefinition/attachment-external-binary-id";
|
||||
|
||||
}
|
|
@ -61,7 +61,11 @@ public class Retrier<T> {
|
|||
@Override
|
||||
public <T, E extends Throwable> void onError(RetryContext context, RetryCallback<T, E> callback, Throwable throwable) {
|
||||
super.onError(context, callback, throwable);
|
||||
ourLog.error("Retry failure {}/{}: {}", context.getRetryCount(), theMaxRetries, throwable.getMessage());
|
||||
if (throwable instanceof NullPointerException) {
|
||||
ourLog.error("Retry failure {}/{}: {}", context.getRetryCount(), theMaxRetries, throwable.getMessage(), throwable);
|
||||
} else {
|
||||
ourLog.error("Retry failure {}/{}: {}", context.getRetryCount(), theMaxRetries, throwable.getMessage());
|
||||
}
|
||||
}
|
||||
};
|
||||
myRetryTemplate.registerListener(listener);
|
||||
|
|
|
@ -22,6 +22,7 @@ package ca.uhn.fhir.jpa.subscription.module.cache;
|
|||
|
||||
import ca.uhn.fhir.context.ConfigurationException;
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.subscription.module.CanonicalSubscription;
|
||||
import ca.uhn.fhir.jpa.subscription.module.CanonicalSubscriptionChannelType;
|
||||
import ca.uhn.fhir.jpa.subscription.module.matcher.SubscriptionMatchingStrategy;
|
||||
|
@ -111,8 +112,8 @@ public class SubscriptionCanonicalizer<S extends IBaseResource> {
|
|||
String subjectTemplate;
|
||||
|
||||
try {
|
||||
from = subscription.getChannel().getExtensionString(SubscriptionConstants.EXT_SUBSCRIPTION_EMAIL_FROM);
|
||||
subjectTemplate = subscription.getChannel().getExtensionString(SubscriptionConstants.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE);
|
||||
from = subscription.getChannel().getExtensionString(JpaConstants.EXT_SUBSCRIPTION_EMAIL_FROM);
|
||||
subjectTemplate = subscription.getChannel().getExtensionString(JpaConstants.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE);
|
||||
} catch (FHIRException theE) {
|
||||
throw new ConfigurationException("Failed to extract subscription extension(s): " + theE.getMessage(), theE);
|
||||
}
|
||||
|
@ -125,8 +126,8 @@ public class SubscriptionCanonicalizer<S extends IBaseResource> {
|
|||
String stripVersionIds;
|
||||
String deliverLatestVersion;
|
||||
try {
|
||||
stripVersionIds = subscription.getChannel().getExtensionString(SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_STRIP_VERSION_IDS);
|
||||
deliverLatestVersion = subscription.getChannel().getExtensionString(SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION);
|
||||
stripVersionIds = subscription.getChannel().getExtensionString(JpaConstants.EXT_SUBSCRIPTION_RESTHOOK_STRIP_VERSION_IDS);
|
||||
deliverLatestVersion = subscription.getChannel().getExtensionString(JpaConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION);
|
||||
} catch (FHIRException theE) {
|
||||
throw new ConfigurationException("Failed to extract subscription extension(s): " + theE.getMessage(), theE);
|
||||
}
|
||||
|
@ -198,8 +199,8 @@ public class SubscriptionCanonicalizer<S extends IBaseResource> {
|
|||
String from;
|
||||
String subjectTemplate;
|
||||
try {
|
||||
from = subscription.getChannel().getExtensionString(SubscriptionConstants.EXT_SUBSCRIPTION_EMAIL_FROM);
|
||||
subjectTemplate = subscription.getChannel().getExtensionString(SubscriptionConstants.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE);
|
||||
from = subscription.getChannel().getExtensionString(JpaConstants.EXT_SUBSCRIPTION_EMAIL_FROM);
|
||||
subjectTemplate = subscription.getChannel().getExtensionString(JpaConstants.EXT_SUBSCRIPTION_SUBJECT_TEMPLATE);
|
||||
} catch (FHIRException theE) {
|
||||
throw new ConfigurationException("Failed to extract subscription extension(s): " + theE.getMessage(), theE);
|
||||
}
|
||||
|
@ -211,8 +212,8 @@ public class SubscriptionCanonicalizer<S extends IBaseResource> {
|
|||
String stripVersionIds;
|
||||
String deliverLatestVersion;
|
||||
try {
|
||||
stripVersionIds = subscription.getChannel().getExtensionString(SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_STRIP_VERSION_IDS);
|
||||
deliverLatestVersion = subscription.getChannel().getExtensionString(SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION);
|
||||
stripVersionIds = subscription.getChannel().getExtensionString(JpaConstants.EXT_SUBSCRIPTION_RESTHOOK_STRIP_VERSION_IDS);
|
||||
deliverLatestVersion = subscription.getChannel().getExtensionString(JpaConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION);
|
||||
} catch (FHIRException theE) {
|
||||
throw new ConfigurationException("Failed to extract subscription extension(s): " + theE.getMessage(), theE);
|
||||
}
|
||||
|
@ -259,7 +260,7 @@ public class SubscriptionCanonicalizer<S extends IBaseResource> {
|
|||
} else {
|
||||
throw new IllegalStateException("Unknown " + SubscriptionMatchingStrategy.class.getSimpleName() + ": " + theStrategy);
|
||||
}
|
||||
meta.addTag().setSystem(SubscriptionConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY).setCode(value).setDisplay(display);
|
||||
meta.addTag().setSystem(JpaConstants.EXT_SUBSCRIPTION_MATCHING_STRATEGY).setCode(value).setDisplay(display);
|
||||
}
|
||||
|
||||
public String getSubscriptionStatus(IBaseResource theSubscription) {
|
||||
|
|
|
@ -24,57 +24,6 @@ import org.hl7.fhir.dstu2.model.Subscription;
|
|||
|
||||
public class SubscriptionConstants {
|
||||
|
||||
/**
|
||||
* <p>
|
||||
* This extension should be of type <code>string</code> and should be
|
||||
* placed on the <code>Subscription.channel</code> element
|
||||
* </p>
|
||||
*/
|
||||
public static final String EXT_SUBSCRIPTION_EMAIL_FROM = "http://hapifhir.io/fhir/StructureDefinition/subscription-email-from";
|
||||
|
||||
/**
|
||||
* <p>
|
||||
* This extension should be of type <code>string</code> and should be
|
||||
* placed on the <code>Subscription.channel</code> element
|
||||
* </p>
|
||||
*/
|
||||
public static final String EXT_SUBSCRIPTION_SUBJECT_TEMPLATE = "http://hapifhir.io/fhir/StructureDefinition/subscription-email-subject-template";
|
||||
|
||||
|
||||
/**
|
||||
* This extension URL indicates whether a REST HOOK delivery should
|
||||
* include the version ID when delivering.
|
||||
* <p>
|
||||
* This extension should be of type <code>boolean</code> and should be
|
||||
* placed on the <code>Subscription.channel</code> element.
|
||||
* </p>
|
||||
*/
|
||||
public static final String EXT_SUBSCRIPTION_RESTHOOK_STRIP_VERSION_IDS = "http://hapifhir.io/fhir/StructureDefinition/subscription-resthook-strip-version-ids";
|
||||
|
||||
/**
|
||||
* This extension URL indicates whether a REST HOOK delivery should
|
||||
* reload the resource and deliver the latest version always. This
|
||||
* could be useful for example if a resource which triggers a
|
||||
* subscription gets updated many times in short succession and there
|
||||
* is no value in delivering the older versions.
|
||||
* <p>
|
||||
* Note that if the resource is now deleted, this may cause
|
||||
* the delivery to be cancelled altogether.
|
||||
* </p>
|
||||
*
|
||||
* <p>
|
||||
* This extension should be of type <code>boolean</code> and should be
|
||||
* placed on the <code>Subscription.channel</code> element.
|
||||
* </p>
|
||||
*/
|
||||
public static final String EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION = "http://hapifhir.io/fhir/StructureDefinition/subscription-resthook-deliver-latest-version";
|
||||
|
||||
/**
|
||||
* Indicate which strategy will be used to match this subscription
|
||||
*/
|
||||
|
||||
public static final String EXT_SUBSCRIPTION_MATCHING_STRATEGY = "http://hapifhir.io/fhir/StructureDefinition/subscription-matching-strategy";
|
||||
|
||||
|
||||
/**
|
||||
* The number of threads used in subscription channel processing
|
||||
|
|
|
@ -2,7 +2,7 @@ package ca.uhn.fhirtest.interceptor;
|
|||
|
||||
import ca.uhn.fhir.jpa.provider.BaseJpaSystemProvider;
|
||||
import ca.uhn.fhir.jpa.provider.BaseTerminologyUploaderProvider;
|
||||
import ca.uhn.fhir.jpa.util.JpaConstants;
|
||||
import ca.uhn.fhir.jpa.model.util.JpaConstants;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ForbiddenOperationException;
|
||||
import ca.uhn.fhir.rest.server.interceptor.auth.AuthorizationInterceptor;
|
||||
|
|
|
@ -1048,7 +1048,7 @@ public class RestfulServer extends HttpServlet implements IRestfulServer<Servlet
|
|||
}
|
||||
|
||||
/*
|
||||
* If it's a 410 Gone, we want to include a location header inthe response
|
||||
* If it's a 410 Gone, we want to include a location header in the response
|
||||
* if we can, since that can include the resource version which is nice
|
||||
* for the user.
|
||||
*/
|
||||
|
|
|
@ -21,6 +21,7 @@ package ca.uhn.fhir.rest.server.interceptor;
|
|||
*/
|
||||
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.interceptor.api.Interceptor;
|
||||
import ca.uhn.fhir.parser.IParser;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import ca.uhn.fhir.rest.server.exceptions.BaseServerResponseException;
|
||||
|
@ -43,7 +44,8 @@ import static org.apache.commons.lang3.StringUtils.isNotBlank;
|
|||
* interceptor may be configured to run any validator modules, and will then add headers to the response or fail the
|
||||
* request with an {@link UnprocessableEntityException HTTP 422 Unprocessable Entity}.
|
||||
*/
|
||||
abstract class BaseValidatingInterceptor<T> extends InterceptorAdapter {
|
||||
@Interceptor
|
||||
abstract class BaseValidatingInterceptor<T> {
|
||||
|
||||
/**
|
||||
* Default value:<br/>
|
||||
|
|
|
@ -27,6 +27,8 @@ import java.nio.charset.Charset;
|
|||
import javax.servlet.http.HttpServletRequest;
|
||||
import javax.servlet.http.HttpServletResponse;
|
||||
|
||||
import ca.uhn.fhir.interceptor.api.Hook;
|
||||
import ca.uhn.fhir.interceptor.api.Pointcut;
|
||||
import org.hl7.fhir.instance.model.api.IBaseOperationOutcome;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
|
||||
|
@ -67,7 +69,7 @@ public class RequestValidatingInterceptor extends BaseValidatingInterceptor<Stri
|
|||
return theValidator.validateWithResult(theRequest);
|
||||
}
|
||||
|
||||
@Override
|
||||
@Hook(Pointcut.SERVER_INCOMING_REQUEST_POST_PROCESSED)
|
||||
public boolean incomingRequestPostProcessed(RequestDetails theRequestDetails, HttpServletRequest theRequest, HttpServletResponse theResponse) throws AuthenticationException {
|
||||
EncodingEnum encoding = RestfulServerUtils.determineRequestEncodingNoDefault(theRequestDetails);
|
||||
if (encoding == null) {
|
||||
|
@ -102,7 +104,7 @@ public class RequestValidatingInterceptor extends BaseValidatingInterceptor<Stri
|
|||
return myAddValidationResultsToResponseOperationOutcome;
|
||||
}
|
||||
|
||||
@Override
|
||||
@Hook(Pointcut.SERVER_OUTGOING_RESPONSE)
|
||||
public boolean outgoingResponse(RequestDetails theRequestDetails, IBaseResource theResponseObject) {
|
||||
if (myAddValidationResultsToResponseOperationOutcome) {
|
||||
if (theResponseObject instanceof IBaseOperationOutcome) {
|
||||
|
|
|
@ -23,6 +23,8 @@ package ca.uhn.fhir.rest.server.interceptor;
|
|||
import java.util.HashSet;
|
||||
import java.util.Set;
|
||||
|
||||
import ca.uhn.fhir.interceptor.api.Hook;
|
||||
import ca.uhn.fhir.interceptor.api.Pointcut;
|
||||
import org.apache.commons.lang3.Validate;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
|
||||
|
@ -54,7 +56,7 @@ public class ResponseValidatingInterceptor extends BaseValidatingInterceptor<IBa
|
|||
public void addExcludeOperationType(RestOperationTypeEnum theOperationType) {
|
||||
Validate.notNull(theOperationType, "theOperationType must not be null");
|
||||
if (myExcludeOperationTypes == null) {
|
||||
myExcludeOperationTypes = new HashSet<RestOperationTypeEnum>();
|
||||
myExcludeOperationTypes = new HashSet<>();
|
||||
}
|
||||
myExcludeOperationTypes.add(theOperationType);
|
||||
}
|
||||
|
@ -64,7 +66,7 @@ public class ResponseValidatingInterceptor extends BaseValidatingInterceptor<IBa
|
|||
return theValidator.validateWithResult(theRequest);
|
||||
}
|
||||
|
||||
@Override
|
||||
@Hook(Pointcut.SERVER_OUTGOING_RESPONSE)
|
||||
public boolean outgoingResponse(RequestDetails theRequestDetails, IBaseResource theResponseObject) {
|
||||
RestOperationTypeEnum operationType = theRequestDetails.getRestOperationType();
|
||||
if (operationType != null && myExcludeOperationTypes != null && myExcludeOperationTypes.contains(operationType)) {
|
||||
|
|
|
@ -300,8 +300,12 @@ public class ConsentInterceptor {
|
|||
}
|
||||
|
||||
private boolean isRequestAuthorized(RequestDetails theRequestDetails) {
|
||||
Object authorizedObj = theRequestDetails.getUserData().get(myRequestAuthorizedKey);
|
||||
return Boolean.TRUE.equals(authorizedObj);
|
||||
boolean retVal = false;
|
||||
if (theRequestDetails != null) {
|
||||
Object authorizedObj = theRequestDetails.getUserData().get(myRequestAuthorizedKey);
|
||||
retVal = Boolean.TRUE.equals(authorizedObj);
|
||||
}
|
||||
return retVal;
|
||||
}
|
||||
|
||||
@SuppressWarnings("unchecked")
|
||||
|
|
|
@ -89,6 +89,8 @@ public abstract class BaseResourceReturningMethodBinding extends BaseMethodBindi
|
|||
myMethodReturnType = MethodReturnTypeEnum.BUNDLE_PROVIDER;
|
||||
} else if (MethodOutcome.class.isAssignableFrom(methodReturnType)) {
|
||||
myMethodReturnType = MethodReturnTypeEnum.METHOD_OUTCOME;
|
||||
} else if (void.class.equals(methodReturnType)) {
|
||||
myMethodReturnType = MethodReturnTypeEnum.VOID;
|
||||
} else {
|
||||
throw new ConfigurationException(
|
||||
"Invalid return type '" + methodReturnType.getCanonicalName() + "' on method '" + theMethod.getName() + "' on type: " + theMethod.getDeclaringClass().getCanonicalName());
|
||||
|
@ -238,9 +240,10 @@ public abstract class BaseResourceReturningMethodBinding extends BaseMethodBindi
|
|||
public IBaseResource doInvokeServer(IRestfulServer<?> theServer, RequestDetails theRequest) {
|
||||
Object[] params = createMethodParams(theRequest);
|
||||
|
||||
|
||||
|
||||
Object resultObj = invokeServer(theServer, theRequest, params);
|
||||
if (resultObj == null) {
|
||||
return null;
|
||||
}
|
||||
|
||||
Integer count = RestfulServerUtils.extractCountParameter(theRequest);
|
||||
|
||||
|
@ -375,6 +378,9 @@ public abstract class BaseResourceReturningMethodBinding extends BaseMethodBindi
|
|||
public Object invokeServer(IRestfulServer<?> theServer, RequestDetails theRequest) throws BaseServerResponseException, IOException {
|
||||
|
||||
IBaseResource response = doInvokeServer(theServer, theRequest);
|
||||
if (response == null) {
|
||||
return null;
|
||||
}
|
||||
|
||||
Set<SummaryEnum> summaryMode = RestfulServerUtils.determineSummaryMode(theRequest);
|
||||
|
||||
|
@ -407,6 +413,7 @@ public abstract class BaseResourceReturningMethodBinding extends BaseMethodBindi
|
|||
BUNDLE_RESOURCE,
|
||||
LIST_OF_RESOURCES,
|
||||
METHOD_OUTCOME,
|
||||
VOID,
|
||||
RESOURCE
|
||||
}
|
||||
|
||||
|
|
|
@ -61,16 +61,19 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
private final String myName;
|
||||
private final RestOperationTypeEnum myOtherOperationType;
|
||||
private final ReturnTypeEnum myReturnType;
|
||||
private boolean myGlobal;
|
||||
private BundleTypeEnum myBundleType;
|
||||
private boolean myCanOperateAtInstanceLevel;
|
||||
private boolean myCanOperateAtServerLevel;
|
||||
private boolean myCanOperateAtTypeLevel;
|
||||
private String myDescription;
|
||||
private List<ReturnType> myReturnParams;
|
||||
private boolean myManualRequestMode;
|
||||
private boolean myManualResponseMode;
|
||||
|
||||
protected OperationMethodBinding(Class<?> theReturnResourceType, Class<? extends IBaseResource> theReturnTypeFromRp, Method theMethod, FhirContext theContext, Object theProvider,
|
||||
boolean theIdempotent, String theOperationName, Class<? extends IBaseResource> theOperationType,
|
||||
OperationParam[] theReturnParams, BundleTypeEnum theBundleType) {
|
||||
boolean theIdempotent, String theOperationName, Class<? extends IBaseResource> theOperationType,
|
||||
OperationParam[] theReturnParams, BundleTypeEnum theBundleType) {
|
||||
super(theReturnResourceType, theMethod, theContext, theProvider);
|
||||
|
||||
myBundleType = theBundleType;
|
||||
|
@ -89,7 +92,7 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
|
||||
if (isBlank(theOperationName)) {
|
||||
throw new ConfigurationException("Method '" + theMethod.getName() + "' on type " + theMethod.getDeclaringClass().getName() + " is annotated with @" + Operation.class.getSimpleName()
|
||||
+ " but this annotation has no name defined");
|
||||
+ " but this annotation has no name defined");
|
||||
}
|
||||
if (theOperationName.startsWith("$") == false) {
|
||||
theOperationName = "$" + theOperationName;
|
||||
|
@ -99,10 +102,10 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
if (theReturnTypeFromRp != null) {
|
||||
setResourceName(theContext.getResourceDefinition(theReturnTypeFromRp).getName());
|
||||
} else if (Modifier.isAbstract(theOperationType.getModifiers()) == false) {
|
||||
setResourceName(theContext.getResourceDefinition(theOperationType).getName());
|
||||
} else {
|
||||
setResourceName(null);
|
||||
}
|
||||
setResourceName(theContext.getResourceDefinition(theOperationType).getName());
|
||||
} else {
|
||||
setResourceName(null);
|
||||
}
|
||||
|
||||
if (theMethod.getReturnType().equals(IBundleProvider.class)) {
|
||||
myReturnType = ReturnTypeEnum.BUNDLE;
|
||||
|
@ -110,24 +113,24 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
myReturnType = ReturnTypeEnum.RESOURCE;
|
||||
}
|
||||
|
||||
myIdParamIndex = ParameterUtil.findIdParameterIndex(theMethod, getContext());
|
||||
myIdParamIndex = ParameterUtil.findIdParameterIndex(theMethod, getContext());
|
||||
if (getResourceName() == null) {
|
||||
myOtherOperationType = RestOperationTypeEnum.EXTENDED_OPERATION_SERVER;
|
||||
myCanOperateAtServerLevel = true;
|
||||
if (myIdParamIndex != null) {
|
||||
myCanOperateAtInstanceLevel = true;
|
||||
}
|
||||
myOtherOperationType = RestOperationTypeEnum.EXTENDED_OPERATION_SERVER;
|
||||
myCanOperateAtServerLevel = true;
|
||||
if (myIdParamIndex != null) {
|
||||
myCanOperateAtInstanceLevel = true;
|
||||
}
|
||||
} else if (myIdParamIndex == null) {
|
||||
myOtherOperationType = RestOperationTypeEnum.EXTENDED_OPERATION_TYPE;
|
||||
myCanOperateAtTypeLevel = true;
|
||||
myOtherOperationType = RestOperationTypeEnum.EXTENDED_OPERATION_TYPE;
|
||||
myCanOperateAtTypeLevel = true;
|
||||
} else {
|
||||
myOtherOperationType = RestOperationTypeEnum.EXTENDED_OPERATION_INSTANCE;
|
||||
myCanOperateAtInstanceLevel = true;
|
||||
for (Annotation next : theMethod.getParameterAnnotations()[myIdParamIndex]) {
|
||||
if (next instanceof IdParam) {
|
||||
myCanOperateAtTypeLevel = ((IdParam) next).optional() == true;
|
||||
}
|
||||
}
|
||||
myOtherOperationType = RestOperationTypeEnum.EXTENDED_OPERATION_INSTANCE;
|
||||
myCanOperateAtInstanceLevel = true;
|
||||
for (Annotation next : theMethod.getParameterAnnotations()[myIdParamIndex]) {
|
||||
if (next instanceof IdParam) {
|
||||
myCanOperateAtTypeLevel = ((IdParam) next).optional() == true;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
myReturnParams = new ArrayList<>();
|
||||
|
@ -151,10 +154,23 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Constructor - This is the constructor that is called when binding a
|
||||
* standard @Operation method.
|
||||
*/
|
||||
public OperationMethodBinding(Class<?> theReturnResourceType, Class<? extends IBaseResource> theReturnTypeFromRp, Method theMethod, FhirContext theContext, Object theProvider,
|
||||
Operation theAnnotation) {
|
||||
Operation theAnnotation) {
|
||||
this(theReturnResourceType, theReturnTypeFromRp, theMethod, theContext, theProvider, theAnnotation.idempotent(), theAnnotation.name(), theAnnotation.type(), theAnnotation.returnParameters(),
|
||||
theAnnotation.bundleType());
|
||||
theAnnotation.bundleType());
|
||||
|
||||
myManualRequestMode = theAnnotation.manualRequest();
|
||||
myManualResponseMode = theAnnotation.manualResponse();
|
||||
myGlobal = theAnnotation.global();
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean isGlobalMethod() {
|
||||
return myGlobal;
|
||||
}
|
||||
|
||||
public String getDescription() {
|
||||
|
@ -206,7 +222,9 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
|
||||
if (getResourceName() == null) {
|
||||
if (isNotBlank(theRequest.getResourceName())) {
|
||||
return false;
|
||||
if (!isGlobalMethod()) {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
@ -222,12 +240,12 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
|
||||
boolean requestHasId = theRequest.getId() != null;
|
||||
if (requestHasId) {
|
||||
return myCanOperateAtInstanceLevel;
|
||||
}
|
||||
if (isNotBlank(theRequest.getResourceName())) {
|
||||
return myCanOperateAtTypeLevel;
|
||||
}
|
||||
return myCanOperateAtServerLevel;
|
||||
return myCanOperateAtInstanceLevel;
|
||||
}
|
||||
if (isNotBlank(theRequest.getResourceName())) {
|
||||
return myCanOperateAtTypeLevel;
|
||||
}
|
||||
return myCanOperateAtServerLevel;
|
||||
}
|
||||
|
||||
@Override
|
||||
|
@ -240,6 +258,12 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
}
|
||||
}
|
||||
|
||||
if (myGlobal && theRequestDetails.getId() != null && theRequestDetails.getId().hasIdPart()) {
|
||||
retVal = RestOperationTypeEnum.EXTENDED_OPERATION_INSTANCE;
|
||||
} else if (myGlobal && isNotBlank(theRequestDetails.getResourceName())) {
|
||||
retVal = RestOperationTypeEnum.EXTENDED_OPERATION_TYPE;
|
||||
}
|
||||
|
||||
return retVal;
|
||||
}
|
||||
|
||||
|
@ -256,7 +280,7 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
|
||||
@Override
|
||||
public Object invokeServer(IRestfulServer<?> theServer, RequestDetails theRequest) throws BaseServerResponseException, IOException {
|
||||
if (theRequest.getRequestType() == RequestTypeEnum.POST) {
|
||||
if (theRequest.getRequestType() == RequestTypeEnum.POST && !myManualRequestMode) {
|
||||
IBaseResource requestContents = ResourceParameter.loadResourceFromRequest(theRequest, this, null);
|
||||
theRequest.getUserData().put(OperationParameter.REQUEST_CONTENTS_USERDATA_KEY, requestContents);
|
||||
}
|
||||
|
@ -286,6 +310,10 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
}
|
||||
|
||||
Object response = invokeServerMethod(theServer, theRequest, theMethodParams);
|
||||
if (myManualResponseMode) {
|
||||
return null;
|
||||
}
|
||||
|
||||
IBundleProvider retVal = toResourceList(response);
|
||||
return retVal;
|
||||
}
|
||||
|
@ -316,6 +344,10 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
|
|||
}
|
||||
}
|
||||
|
||||
public boolean isManualRequestMode() {
|
||||
return myManualRequestMode;
|
||||
}
|
||||
|
||||
public static class ReturnType {
|
||||
private int myMax;
|
||||
private int myMin;
|
||||
|
|
|
@ -210,7 +210,9 @@ public class OperationParameter implements IParameter {
|
|||
public Object translateQueryParametersIntoServerArgument(RequestDetails theRequest, BaseMethodBinding<?> theMethodBinding) throws InternalErrorException, InvalidRequestException {
|
||||
List<Object> matchingParamValues = new ArrayList<Object>();
|
||||
|
||||
if (theRequest.getRequestType() == RequestTypeEnum.GET) {
|
||||
OperationMethodBinding method = (OperationMethodBinding) theMethodBinding;
|
||||
|
||||
if (theRequest.getRequestType() == RequestTypeEnum.GET || method.isManualRequestMode()) {
|
||||
translateQueryParametersIntoServerArgumentForGet(theRequest, matchingParamValues);
|
||||
} else {
|
||||
translateQueryParametersIntoServerArgumentForPost(theRequest, matchingParamValues);
|
||||
|
|
|
@ -7,9 +7,14 @@ import ca.uhn.fhir.rest.annotation.OperationParam;
|
|||
import ca.uhn.fhir.rest.annotation.Read;
|
||||
import ca.uhn.fhir.rest.api.Constants;
|
||||
import ca.uhn.fhir.rest.api.EncodingEnum;
|
||||
import ca.uhn.fhir.rest.api.RestOperationTypeEnum;
|
||||
import ca.uhn.fhir.rest.api.server.IBundleProvider;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import ca.uhn.fhir.rest.client.api.IGenericClient;
|
||||
import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
|
||||
import ca.uhn.fhir.test.utilities.JettyUtil;
|
||||
import ca.uhn.fhir.util.TestUtil;
|
||||
import com.google.common.base.Charsets;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
|
@ -17,6 +22,7 @@ import org.apache.http.HttpResponse;
|
|||
import org.apache.http.client.methods.CloseableHttpResponse;
|
||||
import org.apache.http.client.methods.HttpGet;
|
||||
import org.apache.http.client.methods.HttpPost;
|
||||
import org.apache.http.entity.ByteArrayEntity;
|
||||
import org.apache.http.entity.ContentType;
|
||||
import org.apache.http.entity.StringEntity;
|
||||
import org.apache.http.impl.client.CloseableHttpClient;
|
||||
|
@ -26,6 +32,8 @@ import org.eclipse.jetty.server.Server;
|
|||
import org.eclipse.jetty.servlet.ServletHandler;
|
||||
import org.eclipse.jetty.servlet.ServletHolder;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
import org.hl7.fhir.instance.model.api.IPrimitiveType;
|
||||
import org.hl7.fhir.r4.model.*;
|
||||
import org.hl7.fhir.r4.model.OperationDefinition.OperationParameterUse;
|
||||
import org.junit.AfterClass;
|
||||
|
@ -33,16 +41,18 @@ import org.junit.Before;
|
|||
import org.junit.BeforeClass;
|
||||
import org.junit.Test;
|
||||
|
||||
import javax.servlet.http.HttpServletRequest;
|
||||
import javax.servlet.http.HttpServletResponse;
|
||||
import java.io.IOException;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
import java.util.concurrent.TimeUnit;
|
||||
|
||||
import static org.apache.commons.lang3.StringUtils.isBlank;
|
||||
import static org.hamcrest.Matchers.*;
|
||||
import static org.junit.Assert.*;
|
||||
|
||||
import ca.uhn.fhir.test.utilities.JettyUtil;
|
||||
|
||||
public class OperationServerR4Test {
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(OperationServerR4Test.class);
|
||||
private static final String TEXT_HTML = "text/html";
|
||||
|
@ -57,6 +67,7 @@ public class OperationServerR4Test {
|
|||
private static UnsignedIntType ourLastParamUnsignedInt1;
|
||||
private static int ourPort;
|
||||
private static Server ourServer;
|
||||
private static IBaseResource ourNextResponse;
|
||||
private IGenericClient myFhirClient;
|
||||
|
||||
@Before
|
||||
|
@ -69,11 +80,11 @@ public class OperationServerR4Test {
|
|||
ourLastId = null;
|
||||
ourLastMethod = "";
|
||||
ourNextResponse = null;
|
||||
ourLastRestOperation = null;
|
||||
|
||||
myFhirClient = ourCtx.newRestfulGenericClient("http://localhost:" + ourPort);
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testConformance() {
|
||||
LoggingInterceptor loggingInterceptor = new LoggingInterceptor();
|
||||
|
@ -150,7 +161,7 @@ public class OperationServerR4Test {
|
|||
bundle.addEntry().setResource(patient);
|
||||
|
||||
HttpGet httpPost = new HttpGet("http://localhost:" + ourPort + "/Patient/$OP_TYPE_RETURNING_BUNDLE"
|
||||
+ "?_pretty=true&_elements=identifier");
|
||||
+ "?_pretty=true&_elements=identifier");
|
||||
try (CloseableHttpResponse status = ourClient.execute(httpPost)) {
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
|
@ -165,6 +176,24 @@ public class OperationServerR4Test {
|
|||
}
|
||||
|
||||
|
||||
|
||||
@Test
|
||||
public void testManualResponseWithPrimitiveParam() throws Exception {
|
||||
|
||||
// Try with a GET
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient/123/$manualResponseWithPrimitiveParam?path=THIS_IS_A_PATH");
|
||||
try (CloseableHttpResponse status = ourClient.execute(httpGet)) {
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
String response = IOUtils.toString(status.getEntity().getContent(), StandardCharsets.UTF_8);
|
||||
}
|
||||
|
||||
assertEquals("$manualResponseWithPrimitiveParam", ourLastMethod);
|
||||
assertEquals("Patient/123", ourLastId.toUnqualifiedVersionless().getValue());
|
||||
assertEquals("THIS_IS_A_PATH", ourLastParam1.getValue());
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testInstanceEverythingGet() throws Exception {
|
||||
|
||||
|
@ -181,6 +210,23 @@ public class OperationServerR4Test {
|
|||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testInstanceOnPlainProvider() throws Exception {
|
||||
|
||||
// Try with a GET
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient/123/$OP_PLAIN_PROVIDER_ON_INSTANCE");
|
||||
try (CloseableHttpResponse status = ourClient.execute(httpGet)) {
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
String response = IOUtils.toString(status.getEntity().getContent(), StandardCharsets.UTF_8);
|
||||
assertThat(response, startsWith("<Bundle"));
|
||||
}
|
||||
|
||||
assertEquals("$OP_PLAIN_PROVIDER_ON_INSTANCE", ourLastMethod);
|
||||
assertEquals("Patient/123", ourLastId.toUnqualifiedVersionless().getValue());
|
||||
assertEquals(RestOperationTypeEnum.EXTENDED_OPERATION_INSTANCE, ourLastRestOperation);
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testInstanceEverythingHapiClient() {
|
||||
ourCtx.newRestfulGenericClient("http://localhost:" + ourPort).operation().onInstance(new IdType("Patient/123")).named("$everything").withParameters(new Parameters()).execute();
|
||||
|
@ -226,6 +272,46 @@ public class OperationServerR4Test {
|
|||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testManualInputAndOutput() throws Exception {
|
||||
byte[] bytes = new byte[]{1,2,3,4,5,6,7,8,7,6,5,4,3,2,1};
|
||||
ContentType contentType = ContentType.IMAGE_PNG;
|
||||
|
||||
HttpPost httpPost = new HttpPost("http://localhost:" + ourPort + "/Patient/$manualInputAndOutput");
|
||||
httpPost.setEntity(new ByteArrayEntity(bytes, contentType));
|
||||
try (CloseableHttpResponse status = ourClient.execute(httpPost)) {
|
||||
|
||||
String receivedContentType = status.getEntity().getContentType().getValue();
|
||||
byte[] receivedBytes = IOUtils.toByteArray(status.getEntity().getContent());
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
assertEquals(contentType.getMimeType(), receivedContentType);
|
||||
assertArrayEquals(bytes, receivedBytes);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testManualInputAndOutputWithUrlParam() throws Exception {
|
||||
byte[] bytes = new byte[]{1,2,3,4,5,6,7,8,7,6,5,4,3,2,1};
|
||||
ContentType contentType = ContentType.IMAGE_PNG;
|
||||
|
||||
HttpPost httpPost = new HttpPost("http://localhost:" + ourPort + "/Patient/$manualInputAndOutputWithParam?param1=value");
|
||||
httpPost.setEntity(new ByteArrayEntity(bytes, contentType));
|
||||
try (CloseableHttpResponse status = ourClient.execute(httpPost)) {
|
||||
|
||||
String receivedContentType = status.getEntity().getContentType().getValue();
|
||||
byte[] receivedBytes = IOUtils.toByteArray(status.getEntity().getContent());
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
assertEquals(contentType.getMimeType(), receivedContentType);
|
||||
assertArrayEquals(bytes, receivedBytes);
|
||||
assertEquals("value", ourLastParam1.getValue());
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testOperationCantUseGetIfItIsntIdempotent() throws Exception {
|
||||
HttpGet httpPost = new HttpGet("http://localhost:" + ourPort + "/Patient/123/$OP_INSTANCE");
|
||||
|
@ -439,7 +525,7 @@ public class OperationServerR4Test {
|
|||
|
||||
@Test
|
||||
public void testOperationWithBundleProviderResponse() throws Exception {
|
||||
HttpGet httpPost = new HttpGet("http://localhost:" + ourPort + "/$OP_INSTANCE_BUNDLE_PROVIDER?_pretty=true");
|
||||
HttpGet httpPost = new HttpGet("http://localhost:" + ourPort + "/$OP_SERVER_BUNDLE_PROVIDER?_pretty=true");
|
||||
HttpResponse status = ourClient.execute(httpPost);
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
|
@ -480,7 +566,6 @@ public class OperationServerR4Test {
|
|||
assertThat(response, containsString("Can not invoke operation $OP_TYPE using HTTP GET because parameter PARAM2 is not a primitive datatype"));
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testOperationWithListParam() throws Exception {
|
||||
Parameters p = new Parameters();
|
||||
|
@ -618,7 +703,6 @@ public class OperationServerR4Test {
|
|||
}
|
||||
}
|
||||
|
||||
private static IBaseResource ourNextResponse;
|
||||
public static class PatientProvider implements IResourceProvider {
|
||||
|
||||
|
||||
|
@ -750,6 +834,36 @@ public class OperationServerR4Test {
|
|||
return new Bundle();
|
||||
}
|
||||
|
||||
@Operation(name="$manualInputAndOutput", manualResponse=true, manualRequest=true)
|
||||
public void manualInputAndOutput(HttpServletRequest theServletRequest, HttpServletResponse theServletResponse) throws IOException {
|
||||
String contentType = theServletRequest.getContentType();
|
||||
byte[] bytes = IOUtils.toByteArray(theServletRequest.getInputStream());
|
||||
|
||||
ourLog.info("Received call with content type {} and {} bytes", contentType, bytes.length);
|
||||
|
||||
theServletResponse.setContentType(contentType);
|
||||
theServletResponse.getOutputStream().write(bytes);
|
||||
theServletResponse.getOutputStream().close();
|
||||
}
|
||||
|
||||
@Operation(name="$manualInputAndOutputWithParam", manualResponse=true, manualRequest=true)
|
||||
public void manualInputAndOutputWithParam(
|
||||
@OperationParam(name="param1") StringType theParam1,
|
||||
HttpServletRequest theServletRequest,
|
||||
HttpServletResponse theServletResponse
|
||||
) throws IOException {
|
||||
|
||||
ourLastParam1 = theParam1;
|
||||
String contentType = theServletRequest.getContentType();
|
||||
byte[] bytes = IOUtils.toByteArray(theServletRequest.getInputStream());
|
||||
|
||||
ourLog.info("Received call with content type {} and {} bytes", contentType, bytes.length);
|
||||
|
||||
theServletResponse.setContentType(contentType);
|
||||
theServletResponse.getOutputStream().write(bytes);
|
||||
theServletResponse.getOutputStream().close();
|
||||
}
|
||||
|
||||
/**
|
||||
* Just to make sure this method doesn't "steal" calls
|
||||
*/
|
||||
|
@ -762,12 +876,16 @@ public class OperationServerR4Test {
|
|||
}
|
||||
|
||||
}
|
||||
private static RestOperationTypeEnum ourLastRestOperation;
|
||||
|
||||
public static class PlainProvider {
|
||||
|
||||
@Operation(name = "$OP_INSTANCE_BUNDLE_PROVIDER", idempotent = true)
|
||||
public IBundleProvider opInstanceReturnsBundleProvider() {
|
||||
ourLastMethod = "$OP_INSTANCE_BUNDLE_PROVIDER";
|
||||
|
||||
@Operation(name = "$OP_PLAIN_PROVIDER_ON_INSTANCE", idempotent = true, global = true)
|
||||
public IBundleProvider opPlainProviderOnInstance(@IdParam IdType theId, RequestDetails theRequestDetails) {
|
||||
ourLastMethod = "$OP_PLAIN_PROVIDER_ON_INSTANCE";
|
||||
ourLastId = theId;
|
||||
ourLastRestOperation = theRequestDetails.getRestOperationType();
|
||||
|
||||
List<IBaseResource> resources = new ArrayList<IBaseResource>();
|
||||
for (int i = 0; i < 100; i++) {
|
||||
|
@ -780,7 +898,38 @@ public class OperationServerR4Test {
|
|||
return new SimpleBundleProvider(resources);
|
||||
}
|
||||
|
||||
@Operation(name = "$OP_SERVER")
|
||||
|
||||
@Operation(name = "$OP_SERVER_BUNDLE_PROVIDER", idempotent = true)
|
||||
public IBundleProvider opInstanceReturnsBundleProvider() {
|
||||
ourLastMethod = "$OP_SERVER_BUNDLE_PROVIDER";
|
||||
|
||||
List<IBaseResource> resources = new ArrayList<IBaseResource>();
|
||||
for (int i = 0; i < 100; i++) {
|
||||
Patient p = new Patient();
|
||||
p.setId("Patient/" + i);
|
||||
p.addName().setFamily("Patient " + i);
|
||||
resources.add(p);
|
||||
}
|
||||
|
||||
return new SimpleBundleProvider(resources);
|
||||
}
|
||||
|
||||
@Operation(name= "$manualResponseWithPrimitiveParam", idempotent = true, global = true, manualResponse = true)
|
||||
public void binaryAccess(
|
||||
@IdParam IIdType theResourceId,
|
||||
@OperationParam(name="path", min = 1, max = 1) IPrimitiveType<String> thePath,
|
||||
ServletRequestDetails theRequestDetails,
|
||||
HttpServletRequest theServletRequest,
|
||||
HttpServletResponse theServletResponse) {
|
||||
|
||||
ourLastMethod = "$manualResponseWithPrimitiveParam";
|
||||
ourLastId = (IdType) theResourceId;
|
||||
ourLastParam1 = (StringType) thePath;
|
||||
|
||||
theServletResponse.setStatus(200);
|
||||
}
|
||||
|
||||
@Operation(name = "$OP_SERVER")
|
||||
public Parameters opServer(
|
||||
@OperationParam(name = "PARAM1") StringType theParam1,
|
||||
@OperationParam(name = "PARAM2") Patient theParam2
|
||||
|
@ -859,13 +1008,14 @@ public class OperationServerR4Test {
|
|||
servlet.setPagingProvider(new FifoMemoryPagingProvider(10).setDefaultPageSize(2));
|
||||
|
||||
servlet.setFhirContext(ourCtx);
|
||||
servlet.setResourceProviders(new PatientProvider());
|
||||
servlet.setPlainProviders(new PlainProvider());
|
||||
PlainProvider plainProvider = new PlainProvider();
|
||||
PatientProvider patientProvider = new PatientProvider();
|
||||
servlet.registerProviders(patientProvider, plainProvider);
|
||||
ServletHolder servletHolder = new ServletHolder(servlet);
|
||||
proxyHandler.addServletWithMapping(servletHolder, "/*");
|
||||
ourServer.setHandler(proxyHandler);
|
||||
JettyUtil.startServer(ourServer);
|
||||
ourPort = JettyUtil.getPortForStartedServer(ourServer);
|
||||
ourPort = JettyUtil.getPortForStartedServer(ourServer);
|
||||
|
||||
PoolingHttpClientConnectionManager connectionManager = new PoolingHttpClientConnectionManager(5000, TimeUnit.MILLISECONDS);
|
||||
HttpClientBuilder builder = HttpClientBuilder.create();
|
||||
|
|
|
@ -0,0 +1,818 @@
|
|||
ACCESSIBLE
|
||||
ACCOUNT
|
||||
ACTION
|
||||
ACTIVE
|
||||
ADD
|
||||
ADMIN
|
||||
AFTER
|
||||
AGAINST
|
||||
AGGREGATE
|
||||
ALGORITHM
|
||||
ALL
|
||||
ALTER
|
||||
ALWAYS
|
||||
ANALYSE
|
||||
ANALYZE
|
||||
AND
|
||||
ANY
|
||||
ARRAY
|
||||
AS
|
||||
ASC
|
||||
ASCII
|
||||
ASENSITIVE
|
||||
AT
|
||||
AUTOEXTEND_SIZE
|
||||
AUTO_INCREMENT
|
||||
AVG
|
||||
AVG_ROW_LENGTH
|
||||
B
|
||||
BACKUP
|
||||
BEFORE
|
||||
BEGIN
|
||||
BETWEEN
|
||||
BIGINT
|
||||
BINARY
|
||||
BINLOG
|
||||
BIT
|
||||
BLOB
|
||||
BLOCK
|
||||
BOOL
|
||||
BOOLEAN
|
||||
BOTH
|
||||
BTREE
|
||||
BUCKETS
|
||||
BY
|
||||
BYTE
|
||||
C
|
||||
CACHE
|
||||
CALL
|
||||
CASCADE
|
||||
CASCADED
|
||||
CASE
|
||||
CATALOG_NAME
|
||||
CHAIN
|
||||
CHANGE
|
||||
CHANGED
|
||||
CHANNEL
|
||||
CHAR
|
||||
CHARACTER
|
||||
CHARSET
|
||||
CHECK
|
||||
CHECKSUM
|
||||
CIPHER
|
||||
CLASS_ORIGIN
|
||||
CLIENT
|
||||
CLONE
|
||||
CLOSE
|
||||
COALESCE
|
||||
CODE
|
||||
COLLATE
|
||||
COLLATION
|
||||
COLUMN
|
||||
COLUMNS
|
||||
COLUMN_FORMAT
|
||||
COLUMN_NAME
|
||||
COMMENT
|
||||
COMMIT
|
||||
COMMITTED
|
||||
COMPACT
|
||||
COMPLETION
|
||||
COMPONENT
|
||||
COMPRESSED
|
||||
COMPRESSION
|
||||
CONCURRENT
|
||||
CONDITION
|
||||
CONNECTION
|
||||
CONSISTENT
|
||||
CONSTRAINT
|
||||
CONSTRAINT_CATALOG
|
||||
CONSTRAINT_NAME
|
||||
CONSTRAINT_SCHEMA
|
||||
CONTAINS
|
||||
CONTEXT
|
||||
CONTINUE
|
||||
CONVERT
|
||||
CPU
|
||||
CREATE
|
||||
CROSS
|
||||
CUBE
|
||||
CUME_DIST
|
||||
CURRENT
|
||||
CURRENT_DATE
|
||||
CURRENT_TIME
|
||||
CURRENT_TIMESTAMP
|
||||
CURRENT_USER
|
||||
CURSOR
|
||||
CURSOR_NAME
|
||||
D
|
||||
DATA
|
||||
DATABASE
|
||||
DATABASES
|
||||
DATAFILE
|
||||
DATE
|
||||
DATETIME
|
||||
DAY
|
||||
DAY_HOUR
|
||||
DAY_MICROSECOND
|
||||
DAY_MINUTE
|
||||
DAY_SECOND
|
||||
DEALLOCATE
|
||||
DEC
|
||||
DECIMAL
|
||||
DECLARE
|
||||
DEFAULT
|
||||
DEFAULT_AUTH
|
||||
DEFINER
|
||||
DEFINITION
|
||||
DELAYED
|
||||
DELAY_KEY_WRITE
|
||||
DELETE
|
||||
DENSE_RANK
|
||||
DESC
|
||||
DESCRIBE
|
||||
DESCRIPTION
|
||||
DES_KEY_FILE
|
||||
DETERMINISTIC
|
||||
DIAGNOSTICS
|
||||
DIRECTORY
|
||||
DISABLE
|
||||
DISCARD
|
||||
DISK
|
||||
DISTINCT
|
||||
DISTINCTROW
|
||||
DIV
|
||||
DO
|
||||
DOUBLE
|
||||
DROP
|
||||
DUAL
|
||||
DUMPFILE
|
||||
DUPLICATE
|
||||
DYNAMIC
|
||||
E
|
||||
EACH
|
||||
ELSE
|
||||
ELSEIF
|
||||
EMPTY
|
||||
ENABLE
|
||||
ENCLOSED
|
||||
ENCRYPTION
|
||||
END
|
||||
ENDS
|
||||
ENFORCED
|
||||
ENGINE
|
||||
ENGINES
|
||||
ENUM
|
||||
ERROR
|
||||
ERRORS
|
||||
ESCAPE
|
||||
ESCAPED
|
||||
EVENT
|
||||
EVENTS
|
||||
EVERY
|
||||
EXCEPT
|
||||
EXCHANGE
|
||||
EXCLUDE
|
||||
EXECUTE
|
||||
EXISTS
|
||||
EXIT
|
||||
EXPANSION
|
||||
EXPIRE
|
||||
EXPLAIN
|
||||
EXPORT
|
||||
EXTENDED
|
||||
EXTENT_SIZE
|
||||
F
|
||||
FALSE
|
||||
FAST
|
||||
FAULTS
|
||||
FETCH
|
||||
FIELDS
|
||||
FILE
|
||||
FILE_BLOCK_SIZE
|
||||
FILTER
|
||||
FIRST
|
||||
FIRST_VALUE
|
||||
FIXED
|
||||
FLOAT
|
||||
FLUSH
|
||||
FOLLOWING
|
||||
FOLLOWS
|
||||
FOR
|
||||
FORCE
|
||||
FOREIGN
|
||||
FORMAT
|
||||
FOUND
|
||||
FROM
|
||||
FULL
|
||||
FULLTEXT
|
||||
FUNCTION
|
||||
G
|
||||
GENERAL
|
||||
GENERATED
|
||||
GEOMCOLLECTION
|
||||
GEOMETRY
|
||||
GEOMETRYCOLLECTION
|
||||
GET
|
||||
GET_FORMAT
|
||||
GET_MASTER_PUBLIC_KEY
|
||||
GLOBAL
|
||||
GRANT
|
||||
GRANTS
|
||||
GROUP
|
||||
GROUPING
|
||||
GROUPS
|
||||
GROUP_REPLICATION
|
||||
H
|
||||
HANDLER
|
||||
HASH
|
||||
HAVING
|
||||
HELP
|
||||
HIGH_PRIORITY
|
||||
HISTOGRAM
|
||||
HISTORY
|
||||
HOST
|
||||
HOSTS
|
||||
HOUR
|
||||
HOUR_MICROSECOND
|
||||
HOUR_MINUTE
|
||||
HOUR_SECOND
|
||||
I
|
||||
IDENTIFIED
|
||||
IF
|
||||
IGNORE
|
||||
IGNORE_SERVER_IDS
|
||||
IMPORT
|
||||
IN
|
||||
INACTIVE
|
||||
INDEX
|
||||
INDEXES
|
||||
INFILE
|
||||
INITIAL_SIZE
|
||||
INNER
|
||||
INOUT
|
||||
INSENSITIVE
|
||||
INSERT
|
||||
INSERT_METHOD
|
||||
INSTALL
|
||||
INSTANCE
|
||||
INT
|
||||
INTEGER
|
||||
INTERVAL
|
||||
INTO
|
||||
INVISIBLE
|
||||
INVOKER
|
||||
IO
|
||||
IO_AFTER_GTIDS
|
||||
IO_BEFORE_GTIDS
|
||||
IO_THREAD
|
||||
IPC
|
||||
IS
|
||||
ISOLATION
|
||||
ISSUER
|
||||
ITERATE
|
||||
J
|
||||
JOIN
|
||||
JSON
|
||||
JSON_TABLE
|
||||
K
|
||||
KEY
|
||||
KEYS
|
||||
KEY_BLOCK_SIZE
|
||||
KILL
|
||||
L
|
||||
LAG
|
||||
LANGUAGE
|
||||
LAST
|
||||
LAST_VALUE
|
||||
LATERAL
|
||||
LEAD
|
||||
LEADING
|
||||
LEAVE
|
||||
LEAVES
|
||||
LEFT
|
||||
LESS
|
||||
LEVEL
|
||||
LIKE
|
||||
LIMIT
|
||||
LINEAR
|
||||
LINES
|
||||
LINESTRING
|
||||
LIST
|
||||
LOAD
|
||||
LOCAL
|
||||
LOCALTIME
|
||||
LOCALTIMESTAMP
|
||||
LOCK
|
||||
LOCKED
|
||||
LOCKS
|
||||
LOGFILE
|
||||
LOGS
|
||||
LONG
|
||||
LONGBLOB
|
||||
LONGTEXT
|
||||
LOOP
|
||||
LOW_PRIORITY
|
||||
M
|
||||
MASTER
|
||||
MASTER_AUTO_POSITION
|
||||
MASTER_BIND
|
||||
MASTER_COMPRESSION_ALGORITHMS
|
||||
MASTER_CONNECT_RETRY
|
||||
MASTER_DELAY
|
||||
MASTER_HEARTBEAT_PERIOD
|
||||
MASTER_HOST
|
||||
MASTER_LOG_FILE
|
||||
MASTER_LOG_POS
|
||||
MASTER_PASSWORD
|
||||
MASTER_PORT
|
||||
MASTER_PUBLIC_KEY_PATH
|
||||
MASTER_RETRY_COUNT
|
||||
MASTER_SERVER_ID
|
||||
MASTER_SSL
|
||||
MASTER_SSL_CA
|
||||
MASTER_SSL_CAPATH
|
||||
MASTER_SSL_CERT
|
||||
MASTER_SSL_CIPHER
|
||||
MASTER_SSL_CRL
|
||||
MASTER_SSL_CRLPATH
|
||||
MASTER_SSL_KEY
|
||||
MASTER_SSL_VERIFY_SERVER_CERT
|
||||
MASTER_TLS_VERSION
|
||||
MASTER_USER
|
||||
MASTER_ZSTD_COMPRESSION_LEVEL
|
||||
MATCH
|
||||
MAXVALUE
|
||||
MAX_CONNECTIONS_PER_HOUR
|
||||
MAX_QUERIES_PER_HOUR
|
||||
MAX_ROWS
|
||||
MAX_SIZE
|
||||
MAX_UPDATES_PER_HOUR
|
||||
MAX_USER_CONNECTIONS
|
||||
MEDIUM
|
||||
MEDIUMBLOB
|
||||
MEDIUMINT
|
||||
MEDIUMTEXT
|
||||
MEMBER
|
||||
MEMORY
|
||||
MERGE
|
||||
MESSAGE_TEXT
|
||||
MICROSECOND
|
||||
MIDDLEINT
|
||||
MIGRATE
|
||||
MINUTE
|
||||
MINUTE_MICROSECOND
|
||||
MINUTE_SECOND
|
||||
MIN_ROWS
|
||||
MOD
|
||||
MODE
|
||||
MODIFIES
|
||||
MODIFY
|
||||
MONTH
|
||||
MULTILINESTRING
|
||||
MULTIPOINT
|
||||
MULTIPOLYGON
|
||||
MUTEX
|
||||
MYSQL_ERRNO
|
||||
N
|
||||
NAME
|
||||
NAMES
|
||||
NATIONAL
|
||||
NATURAL
|
||||
NCHAR
|
||||
NDB
|
||||
NDBCLUSTER
|
||||
NESTED
|
||||
NETWORK_NAMESPACE
|
||||
NEVER
|
||||
NEW
|
||||
NEXT
|
||||
NO
|
||||
NODEGROUP
|
||||
NONE
|
||||
NOT
|
||||
NOWAIT
|
||||
NO_WAIT
|
||||
NO_WRITE_TO_BINLOG
|
||||
NTH_VALUE
|
||||
NTILE
|
||||
NULL
|
||||
NULLS
|
||||
NUMBER
|
||||
NUMERIC
|
||||
NVARCHAR
|
||||
O
|
||||
OF
|
||||
OFFSET
|
||||
OJ
|
||||
OLD
|
||||
ON
|
||||
ONE
|
||||
ONLY
|
||||
OPEN
|
||||
OPTIMIZE
|
||||
OPTIMIZER_COSTS
|
||||
OPTION
|
||||
OPTIONAL
|
||||
OPTIONALLY
|
||||
OPTIONS
|
||||
OR
|
||||
ORDER
|
||||
ORDINALITY
|
||||
ORGANIZATION
|
||||
OTHERS
|
||||
OUT
|
||||
OUTER
|
||||
OUTFILE
|
||||
OVER
|
||||
OWNER
|
||||
P
|
||||
PACK_KEYS
|
||||
PAGE
|
||||
PARSER
|
||||
PARTIAL
|
||||
PARTITION
|
||||
PARTITIONING
|
||||
PARTITIONS
|
||||
PASSWORD
|
||||
PATH
|
||||
PERCENT_RANK
|
||||
PERSIST
|
||||
PERSIST_ONLY
|
||||
PHASE
|
||||
PLUGIN
|
||||
PLUGINS
|
||||
PLUGIN_DIR
|
||||
POINT
|
||||
POLYGON
|
||||
PORT
|
||||
PRECEDES
|
||||
PRECEDING
|
||||
PRECISION
|
||||
PREPARE
|
||||
PRESERVE
|
||||
PREV
|
||||
PRIMARY
|
||||
PRIVILEGES
|
||||
PROCEDURE
|
||||
PROCESS
|
||||
PROCESSLIST
|
||||
PROFILE
|
||||
PROFILES
|
||||
PROXY
|
||||
PURGE
|
||||
Q
|
||||
QUARTER
|
||||
QUERY
|
||||
QUICK
|
||||
R
|
||||
RANDOM
|
||||
RANGE
|
||||
RANK
|
||||
READ
|
||||
READS
|
||||
READ_ONLY
|
||||
READ_WRITE
|
||||
REAL
|
||||
REBUILD
|
||||
RECOVER
|
||||
RECURSIVE
|
||||
REDOFILE
|
||||
REDO_BUFFER_SIZE
|
||||
REDUNDANT
|
||||
REFERENCE
|
||||
REFERENCES
|
||||
REGEXP
|
||||
RELAY
|
||||
RELAYLOG
|
||||
RELAY_LOG_FILE
|
||||
RELAY_LOG_POS
|
||||
RELAY_THREAD
|
||||
RELEASE
|
||||
RELOAD
|
||||
REMOTE
|
||||
REMOVE
|
||||
RENAME
|
||||
REORGANIZE
|
||||
REPAIR
|
||||
REPEAT
|
||||
REPEATABLE
|
||||
REPLACE
|
||||
REPLICATE_DO_DB
|
||||
REPLICATE_DO_TABLE
|
||||
REPLICATE_IGNORE_DB
|
||||
REPLICATE_IGNORE_TABLE
|
||||
REPLICATE_REWRITE_DB
|
||||
REPLICATE_WILD_DO_TABLE
|
||||
REPLICATE_WILD_IGNORE_TABLE
|
||||
REPLICATION
|
||||
REQUIRE
|
||||
RESET
|
||||
RESIGNAL
|
||||
RESOURCE
|
||||
RESPECT
|
||||
RESTART
|
||||
RESTORE
|
||||
RESTRICT
|
||||
RESUME
|
||||
RETAIN
|
||||
RETURN
|
||||
RETURNED_SQLSTATE
|
||||
RETURNS
|
||||
REUSE
|
||||
REVERSE
|
||||
REVOKE
|
||||
RIGHT
|
||||
RLIKE
|
||||
ROLE
|
||||
ROLLBACK
|
||||
ROLLUP
|
||||
ROTATE
|
||||
ROUTINE
|
||||
ROW
|
||||
ROWS
|
||||
ROW_COUNT
|
||||
ROW_FORMAT
|
||||
ROW_NUMBER
|
||||
RTREE
|
||||
S
|
||||
SAVEPOINT
|
||||
SCHEDULE
|
||||
SCHEMA
|
||||
SCHEMAS
|
||||
SCHEMA_NAME
|
||||
SECOND
|
||||
SECONDARY
|
||||
SECONDARY_ENGINE
|
||||
SECONDARY_LOAD
|
||||
SECONDARY_UNLOAD
|
||||
SECOND_MICROSECOND
|
||||
SECURITY
|
||||
SELECT
|
||||
SENSITIVE
|
||||
SEPARATOR
|
||||
SERIAL
|
||||
SERIALIZABLE
|
||||
SERVER
|
||||
SESSION
|
||||
SET
|
||||
SHARE
|
||||
SHOW
|
||||
SHUTDOWN
|
||||
SIGNAL
|
||||
SIGNED
|
||||
SIMPLE
|
||||
SKIP
|
||||
SLAVE
|
||||
SLOW
|
||||
SMALLINT
|
||||
SNAPSHOT
|
||||
SOCKET
|
||||
SOME
|
||||
SONAME
|
||||
SOUNDS
|
||||
SOURCE
|
||||
SPATIAL
|
||||
SPECIFIC
|
||||
SQL
|
||||
SQLEXCEPTION
|
||||
SQLSTATE
|
||||
SQLWARNING
|
||||
SQL_AFTER_GTIDS
|
||||
SQL_AFTER_MTS_GAPS
|
||||
SQL_BEFORE_GTIDS
|
||||
SQL_BIG_RESULT
|
||||
SQL_BUFFER_RESULT
|
||||
SQL_CACHE
|
||||
SQL_CALC_FOUND_ROWS
|
||||
SQL_NO_CACHE
|
||||
SQL_SMALL_RESULT
|
||||
SQL_THREAD
|
||||
SQL_TSI_DAY
|
||||
SQL_TSI_HOUR
|
||||
SQL_TSI_MINUTE
|
||||
SQL_TSI_MONTH
|
||||
SQL_TSI_QUARTER
|
||||
SQL_TSI_SECOND
|
||||
SQL_TSI_WEEK
|
||||
SQL_TSI_YEAR
|
||||
SRID
|
||||
SSL
|
||||
STACKED
|
||||
START
|
||||
STARTING
|
||||
STARTS
|
||||
STATS_AUTO_RECALC
|
||||
STATS_PERSISTENT
|
||||
STATS_SAMPLE_PAGES
|
||||
STATUS
|
||||
STOP
|
||||
STORAGE
|
||||
STORED
|
||||
STRAIGHT_JOIN
|
||||
STRING
|
||||
SUBCLASS_ORIGIN
|
||||
SUBJECT
|
||||
SUBPARTITION
|
||||
SUBPARTITIONS
|
||||
SUPER
|
||||
SUSPEND
|
||||
SWAPS
|
||||
SWITCHES
|
||||
SYSTEM
|
||||
T
|
||||
TABLE
|
||||
TABLES
|
||||
TABLESPACE
|
||||
TABLE_CHECKSUM
|
||||
TABLE_NAME
|
||||
TEMPORARY
|
||||
TEMPTABLE
|
||||
TERMINATED
|
||||
TEXT
|
||||
THAN
|
||||
THEN
|
||||
THREAD_PRIORITY
|
||||
TIES
|
||||
TIME
|
||||
TIMESTAMP
|
||||
TIMESTAMPADD
|
||||
TIMESTAMPDIFF
|
||||
TINYBLOB
|
||||
TINYINT
|
||||
TINYTEXT
|
||||
TO
|
||||
TRAILING
|
||||
TRANSACTION
|
||||
TRIGGER
|
||||
TRIGGERS
|
||||
TRUE
|
||||
TRUNCATE
|
||||
TYPE
|
||||
TYPES
|
||||
U
|
||||
UNBOUNDED
|
||||
UNCOMMITTED
|
||||
UNDEFINED
|
||||
UNDO
|
||||
UNDOFILE
|
||||
UNDO_BUFFER_SIZE
|
||||
UNICODE
|
||||
UNINSTALL
|
||||
UNION
|
||||
UNIQUE
|
||||
UNKNOWN
|
||||
UNLOCK
|
||||
UNSIGNED
|
||||
UNTIL
|
||||
UPDATE
|
||||
UPGRADE
|
||||
USAGE
|
||||
USE
|
||||
USER
|
||||
USER_RESOURCES
|
||||
USE_FRM
|
||||
USING
|
||||
UTC_DATE
|
||||
UTC_TIME
|
||||
UTC_TIMESTAMP
|
||||
V
|
||||
VALIDATION
|
||||
VALUE
|
||||
VALUES
|
||||
VARBINARY
|
||||
VARCHAR
|
||||
VARCHARACTER
|
||||
VARIABLES
|
||||
VARYING
|
||||
VCPU
|
||||
VIEW
|
||||
VIRTUAL
|
||||
VISIBLE
|
||||
W
|
||||
WAIT
|
||||
WARNINGS
|
||||
WEEK
|
||||
WEIGHT_STRING
|
||||
WHEN
|
||||
WHERE
|
||||
WHILE
|
||||
WINDOW
|
||||
WITH
|
||||
WITHOUT
|
||||
WORK
|
||||
WRAPPER
|
||||
WRITE
|
||||
X
|
||||
XA
|
||||
XID
|
||||
XML
|
||||
XOR
|
||||
Y
|
||||
YEAR
|
||||
YEAR_MONTH
|
||||
Z
|
||||
ZEROFILL
|
||||
A
|
||||
ACTIVE
|
||||
ADMIN
|
||||
ARRAY
|
||||
B
|
||||
BUCKETS
|
||||
C
|
||||
CLONE
|
||||
COMPONENT
|
||||
CUME_DIST
|
||||
D
|
||||
DEFINITION
|
||||
DENSE_RANK
|
||||
DESCRIPTION
|
||||
E
|
||||
EMPTY
|
||||
ENFORCED
|
||||
EXCEPT
|
||||
EXCLUDE
|
||||
F
|
||||
FIRST_VALUE
|
||||
FOLLOWING
|
||||
G
|
||||
GEOMCOLLECTION
|
||||
GET_MASTER_PUBLIC_KEY
|
||||
GROUPING
|
||||
GROUPS
|
||||
H
|
||||
HISTOGRAM
|
||||
HISTORY
|
||||
I
|
||||
INACTIVE
|
||||
INVISIBLE
|
||||
J
|
||||
JSON_TABLE
|
||||
L
|
||||
LAG
|
||||
LAST_VALUE
|
||||
LATERAL
|
||||
LEAD
|
||||
LOCKED
|
||||
M
|
||||
MASTER_COMPRESSION_ALGORITHMS
|
||||
MASTER_PUBLIC_KEY_PATH
|
||||
MASTER_ZSTD_COMPRESSION_LEVEL
|
||||
MEMBER
|
||||
N
|
||||
NESTED
|
||||
NETWORK_NAMESPACE
|
||||
NOWAIT
|
||||
NTH_VALUE
|
||||
NTILE
|
||||
NULLS
|
||||
O
|
||||
OF
|
||||
OJ
|
||||
OLD
|
||||
OPTIONAL
|
||||
ORDINALITY
|
||||
ORGANIZATION
|
||||
OTHERS
|
||||
OVER
|
||||
P
|
||||
PATH
|
||||
PERCENT_RANK
|
||||
PERSIST
|
||||
PERSIST_ONLY
|
||||
PRECEDING
|
||||
PROCESS
|
||||
R
|
||||
RANDOM
|
||||
RANK
|
||||
RECURSIVE
|
||||
REFERENCE
|
||||
RESOURCE
|
||||
RESPECT
|
||||
RESTART
|
||||
RETAIN
|
||||
REUSE
|
||||
ROLE
|
||||
ROW_NUMBER
|
||||
S
|
||||
SECONDARY
|
||||
SECONDARY_ENGINE
|
||||
SECONDARY_LOAD
|
||||
SECONDARY_UNLOAD
|
||||
SKIP
|
||||
SRID
|
||||
SYSTEM
|
||||
T
|
||||
THREAD_PRIORITY
|
||||
TIES
|
||||
U
|
||||
UNBOUNDED
|
||||
V
|
||||
VCPU
|
||||
VISIBLE
|
||||
W
|
||||
WINDOW
|
||||
ANALYSE
|
||||
DES_KEY_FILE
|
||||
PARSE_GCOL_EXPR
|
||||
REDOFILE
|
||||
SQL_CACHE
|
Some files were not shown because too many files have changed in this diff Show More
Loading…
Reference in New Issue