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hapi-fhir
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jamesagnew 2014-02-17 17:58:32 -05:00
commit 8d322c373c
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.classpath Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
<classpathentry kind="output" path="bin"/>
</classpath>

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/bin
/target

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.project Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>hapi-fhir</name>
<comment></comment>
<projects>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
<arguments>
</arguments>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.jdt.core.javanature</nature>
</natures>
</projectDescription>

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.settings/org.eclipse.jdt.core.prefs Normal file
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eclipse.preferences.version=1
org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
org.eclipse.jdt.core.compiler.compliance=1.6
org.eclipse.jdt.core.compiler.debug.lineNumber=generate
org.eclipse.jdt.core.compiler.debug.localVariable=generate
org.eclipse.jdt.core.compiler.debug.sourceFile=generate
org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
org.eclipse.jdt.core.compiler.source=1.6

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hapi-fhir-base/.classpath Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry including="**/*.java" kind="src" path="src/main/java"/>
<classpathentry kind="src" path="src/test/java"/>
<classpathentry kind="var" path="M2_REPO/javax/xml/stream/stax-api/1.0-2/stax-api-1.0-2.jar" sourcepath="M2_REPO/javax/xml/stream/stax-api/1.0-2/stax-api-1.0-2-sources.jar"/>
<classpathentry kind="var" path="M2_REPO/org/apache/commons/commons-lang3/3.2.1/commons-lang3-3.2.1.jar" sourcepath="M2_REPO/org/apache/commons/commons-lang3/3.2.1/commons-lang3-3.2.1-sources.jar">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/org/apache/commons/commons-lang3/3.2.1/commons-lang3-3.2.1-javadoc.jar!/"/>
</attributes>
</classpathentry>
<classpathentry kind="var" path="M2_REPO/com/google/code/gson/gson/2.2.4/gson-2.2.4.jar" sourcepath="M2_REPO/com/google/code/gson/gson/2.2.4/gson-2.2.4-sources.jar">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/com/google/code/gson/gson/2.2.4/gson-2.2.4-javadoc.jar!/"/>
</attributes>
</classpathentry>
<classpathentry kind="var" path="M2_REPO/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar" sourcepath="M2_REPO/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3-sources.jar">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3-javadoc.jar!/"/>
</attributes>
</classpathentry>
<classpathentry kind="var" path="M2_REPO/junit/junit/4.11/junit-4.11.jar" sourcepath="M2_REPO/junit/junit/4.11/junit-4.11-sources.jar">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/junit/junit/4.11/junit-4.11-javadoc.jar!/"/>
</attributes>
</classpathentry>
<classpathentry kind="var" path="M2_REPO/ch/qos/logback/logback-classic/1.1.1/logback-classic-1.1.1.jar" sourcepath="M2_REPO/ch/qos/logback/logback-classic/1.1.1/logback-classic-1.1.1-sources.jar">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/ch/qos/logback/logback-classic/1.1.1/logback-classic-1.1.1-javadoc.jar!/"/>
</attributes>
</classpathentry>
<classpathentry kind="var" path="M2_REPO/ch/qos/logback/logback-core/1.1.1/logback-core-1.1.1.jar" sourcepath="M2_REPO/ch/qos/logback/logback-core/1.1.1/logback-core-1.1.1-sources.jar">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/ch/qos/logback/logback-core/1.1.1/logback-core-1.1.1-javadoc.jar!/"/>
</attributes>
</classpathentry>
<classpathentry kind="var" path="M2_REPO/org/slf4j/slf4j-api/1.7.6/slf4j-api-1.7.6.jar" sourcepath="M2_REPO/org/slf4j/slf4j-api/1.7.6/slf4j-api-1.7.6-sources.jar">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/org/slf4j/slf4j-api/1.7.6/slf4j-api-1.7.6-javadoc.jar!/"/>
</attributes>
</classpathentry>
<classpathentry kind="var" path="M2_REPO/org/codehaus/woodstox/stax2-api/3.1.1/stax2-api-3.1.1.jar" sourcepath="M2_REPO/org/codehaus/woodstox/stax2-api/3.1.1/stax2-api-3.1.1-sources.jar"/>
<classpathentry kind="var" path="M2_REPO/org/codehaus/woodstox/woodstox-core-asl/4.2.0/woodstox-core-asl-4.2.0.jar" sourcepath="M2_REPO/org/codehaus/woodstox/woodstox-core-asl/4.2.0/woodstox-core-asl-4.2.0-sources.jar">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/org/codehaus/woodstox/woodstox-core-asl/4.2.0/woodstox-core-asl-4.2.0-javadoc.jar!/"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
<classpathentry kind="output" path="target/classes"/>
</classpath>

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hapi-fhir-base/.gitignore vendored Normal file
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/target
/bin

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hapi-fhir-base/.project Normal file
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<projectDescription>
<name>hapi-fhir-base</name>
<comment>NO_M2ECLIPSE_SUPPORT: Project files created with the maven-eclipse-plugin are not supported in M2Eclipse.</comment>
<projects/>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.jdt.core.javanature</nature>
</natures>
</projectDescription>

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hapi-fhir-base/.settings/org.eclipse.jdt.core.prefs Normal file
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#Sun Feb 16 17:15:18 EST 2014
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
eclipse.preferences.version=1
org.eclipse.jdt.core.compiler.source=1.6
org.eclipse.jdt.core.compiler.compliance=1.6

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hapi-fhir-base/pom.xml Normal file
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>1.0-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<packaging>jar</packaging>
<name>HAPI FHIR Base Library</name>
<dependencies>
<!-- JSON -->
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
<version>2.2.4</version>
</dependency>
<!-- XML -->
<dependency>
<groupId>org.codehaus.woodstox</groupId>
<artifactId>woodstox-core-asl</artifactId>
<version>4.2.0</version>
</dependency>
<!-- General -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.2.1</version>
</dependency>
<!-- Logging -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>1.7.6</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.1.1</version>
<optional>true</optional>
</dependency>
<!-- Testing -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.11</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
</plugins>
</build>
</project>

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hapi-fhir-base/src/main/java/ca/uhn/fhir/context/BaseRuntimeChildDefinition.java Normal file
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package ca.uhn.fhir.context;
import static org.apache.commons.lang3.StringUtils.*;
import java.lang.reflect.Field;
public class BaseRuntimeChildDefinition {
private String myElementName;
private Field myField;
private int myMin;
private int myMax;
BaseRuntimeChildDefinition(Field theField, String theElementName, int theMin, int theMax) throws ConfigurationException {
super();
if (theField == null) {
throw new IllegalArgumentException("No field speficied");
}
if (isBlank(theElementName)) {
throw new ConfigurationException("Element name can not be blank");
}
if (theMin < 0) {
throw new ConfigurationException("Min must be >= 0");
}
if (theMax != -1 && theMax < theMin) {
throw new ConfigurationException("Max must be >= Min (unless it is -1 / unlimited)");
}
myField=theField;
myElementName = theElementName;
myMin=theMin;
myMax=theMax;
}
public int getMin() {
return myMin;
}
public int getMax() {
return myMax;
}
public Field getField() {
return myField;
}
public String getElementName() {
return myElementName;
}
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/context/BaseRuntimeCompositeElementDefinition.java Normal file
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package ca.uhn.fhir.context;
import java.util.ArrayList;
import ca.uhn.fhir.model.api.ICompositeElement;
public class BaseRuntimeCompositeElementDefinition<T extends ICompositeElement> extends BaseRuntimeElementDefinition<T> {
private ArrayList<BaseRuntimeChildDefinition> myChildren = new ArrayList<BaseRuntimeChildDefinition>();
public BaseRuntimeCompositeElementDefinition(String theName, Class<? extends T> theImplementingClass) {
super(theName, theImplementingClass);
}
public void addChild(BaseRuntimeChildDefinition theNext) {
myChildren.add(theNext);
}
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/context/BaseRuntimeElementDefinition.java Normal file
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package ca.uhn.fhir.context;
import ca.uhn.fhir.model.api.IElement;
public abstract class BaseRuntimeElementDefinition<T extends IElement> {
private String myName;
private Class<? extends T> myImplementingClass;
public BaseRuntimeElementDefinition(String theName, Class<? extends T> theImplementingClass) {
myName = theName;
myImplementingClass=theImplementingClass;
}
/**
* @return Returns the runtime name for this resource (i.e. the name that
* will be used in encoded messages)
*/
public String getName() {
return myName;
}
public Class<? extends T> getImplementingClass() {
return myImplementingClass;
}
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/context/ConfigurationException.java Normal file
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package ca.uhn.fhir.context;
/**
* Non-checked exception indicating that HAPI was unable to initialize due to
* a detected configuration problem
*/
public class ConfigurationException extends RuntimeException {
private static final long serialVersionUID = 1L;
public ConfigurationException() {
super();
}
public ConfigurationException(String theMessage, Throwable theCause) {
super(theMessage, theCause);
}
public ConfigurationException(String theMessage) {
super(theMessage);
}
public ConfigurationException(Throwable theCause) {
super(theCause);
}
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/context/FhirContext.java Normal file
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package ca.uhn.fhir.context;
import ca.uhn.fhir.model.api.IResource;
public class FhirContext {
private ModelScanner myModelScanner;
public FhirContext(Class<? extends IResource>... theResourceTypes) {
}
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/context/ModelScanner.java Normal file
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package ca.uhn.fhir.context;
import static org.apache.commons.lang3.StringUtils.*;
import java.beans.BeanDescriptor;
import java.beans.IntrospectionException;
import java.beans.PropertyDescriptor;
import java.lang.reflect.Field;
import java.lang.reflect.Method;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import org.apache.commons.lang3.ObjectUtils;
import org.apache.commons.lang3.StringUtils;
import com.ctc.wstx.util.StringUtil;
import ca.uhn.fhir.model.api.CodeableConceptElement;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.ICodeEnum;
import ca.uhn.fhir.model.api.ICompositeDatatype;
import ca.uhn.fhir.model.api.ICompositeElement;
import ca.uhn.fhir.model.api.IDatatype;
import ca.uhn.fhir.model.api.IElement;
import ca.uhn.fhir.model.api.IPrimitiveDatatype;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.api.ResourceChoiceElement;
import ca.uhn.fhir.model.api.ResourceElement;
import ca.uhn.fhir.model.api.ResourceReference;
import ca.uhn.fhir.model.api.ResourceReferenceElement;
import ca.uhn.fhir.model.resource.ResourceDefinition;
class ModelScanner {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ModelScanner.class);
private Map<Class<? extends IElement>, BaseRuntimeElementDefinition<?>> myClassToResourceDefinitions = new HashMap<Class<? extends IElement>, BaseRuntimeElementDefinition<?>>();
private Map<String, BaseRuntimeElementDefinition<?>> myNameToResourceDefinitions = new HashMap<String, BaseRuntimeElementDefinition<?>>();
// private Map<String, RuntimeResourceDefinition>
// myNameToDatatypeDefinitions = new HashMap<String,
// RuntimeDatatypeDefinition>();
ModelScanner(Class<? extends IResource>... theResourceTypes) throws ConfigurationException {
for (Class<? extends IResource> nextClass : theResourceTypes) {
scan(nextClass);
}
}
private String scan(Class<? extends IElement> theClass) throws ConfigurationException {
BaseRuntimeElementDefinition<?> existingDef = myClassToResourceDefinitions.get(theClass);
if (existingDef != null) {
return existingDef.getName();
}
ResourceDefinition resourceDefinition = theClass.getAnnotation(ResourceDefinition.class);
if (resourceDefinition != null) {
if (!IResource.class.isAssignableFrom(theClass)) {
throw new ConfigurationException("Resource type contains a @" + ResourceDefinition.class.getSimpleName() + " annotation but does not implement " + IResource.class.getCanonicalName() + ": " + theClass.getCanonicalName());
}
@SuppressWarnings("unchecked")
Class<? extends IResource> resClass = (Class<? extends IResource>) theClass;
return scanResource(resClass, resourceDefinition);
}
DatatypeDefinition datatypeDefinition = theClass.getAnnotation(DatatypeDefinition.class);
if (datatypeDefinition != null) {
if (ICompositeDatatype.class.isAssignableFrom(theClass)) {
@SuppressWarnings("unchecked")
Class<? extends ICompositeDatatype> resClass = (Class<? extends ICompositeDatatype>) theClass;
return scanCompositeDatatype(resClass, datatypeDefinition);
} else if (IPrimitiveDatatype.class.isAssignableFrom(theClass)) {
@SuppressWarnings("unchecked")
Class<? extends IPrimitiveDatatype> resClass = (Class<? extends IPrimitiveDatatype>) theClass;
return scanPrimitiveDatatype(resClass, datatypeDefinition);
} else {
throw new ConfigurationException("Resource type contains a @" + DatatypeDefinition.class.getSimpleName() + " annotation but does not implement " + IDatatype.class.getCanonicalName() + ": " + theClass.getCanonicalName());
}
}
throw new ConfigurationException("Resource type does not contain a @" + ResourceDefinition.class.getSimpleName() + " annotation or a @" + DatatypeDefinition.class.getSimpleName() + " annotation: " + theClass.getCanonicalName());
}
private String scanCompositeDatatype(Class<? extends ICompositeDatatype> theClass, DatatypeDefinition theDatatypeDefinition) {
ourLog.debug("Scanning resource class: {}", theClass.getName());
String resourceName = theDatatypeDefinition.name();
if (isBlank(resourceName)) {
throw new ConfigurationException("Resource type @" + ResourceDefinition.class.getSimpleName() + " annotation contains no resource name: " + theClass.getCanonicalName());
}
if (myNameToResourceDefinitions.containsKey(resourceName)) {
if (!myNameToResourceDefinitions.get(resourceName).getImplementingClass().equals(theClass)) {
throw new ConfigurationException("Detected duplicate element name '" + resourceName + "' in types '" + theClass.getCanonicalName() + "' and '" + myNameToResourceDefinitions.get(resourceName).getImplementingClass() + "'");
}
return resourceName;
}
RuntimeCompositeDatatypeDefinition resourceDef = new RuntimeCompositeDatatypeDefinition(resourceName, theClass);
myClassToResourceDefinitions.put(theClass, resourceDef);
myNameToResourceDefinitions.put(resourceName, resourceDef);
scanCompositeElementForChildren(theClass, resourceDef);
return resourceName;
}
private String scanPrimitiveDatatype(Class<? extends IPrimitiveDatatype> theClass, DatatypeDefinition theDatatypeDefinition) {
ourLog.debug("Scanning resource class: {}", theClass.getName());
String resourceName = theDatatypeDefinition.name();
if (isBlank(resourceName)) {
throw new ConfigurationException("Resource type @" + ResourceDefinition.class.getSimpleName() + " annotation contains no resource name: " + theClass.getCanonicalName());
}
if (myNameToResourceDefinitions.containsKey(resourceName)) {
if (!myNameToResourceDefinitions.get(resourceName).getImplementingClass().equals(theClass)) {
throw new ConfigurationException("Detected duplicate element name '" + resourceName + "' in types '" + theClass.getCanonicalName() + "' and '" + myNameToResourceDefinitions.get(resourceName).getImplementingClass() + "'");
}
return resourceName;
}
RuntimePrimitiveDatatypeDefinition resourceDef = new RuntimePrimitiveDatatypeDefinition(resourceName, theClass);
myClassToResourceDefinitions.put(theClass, resourceDef);
myNameToResourceDefinitions.put(resourceName, resourceDef);
return resourceName;
}
private String scanResource(Class<? extends IResource> theClass, ResourceDefinition resourceDefinition) {
ourLog.debug("Scanning resource class: {}", theClass.getName());
String resourceName = resourceDefinition.name();
if (isBlank(resourceName)) {
throw new ConfigurationException("Resource type @" + ResourceDefinition.class.getSimpleName() + " annotation contains no resource name: " + theClass.getCanonicalName());
}
if (myNameToResourceDefinitions.containsKey(resourceName)) {
if (!myNameToResourceDefinitions.get(resourceName).getImplementingClass().equals(theClass)) {
throw new ConfigurationException("Detected duplicate element name '" + resourceName + "' in types '" + theClass.getCanonicalName() + "' and '" + myNameToResourceDefinitions.get(resourceName).getImplementingClass() + "'");
}
return resourceName;
}
RuntimeResourceDefinition resourceDef = new RuntimeResourceDefinition(theClass, resourceName);
myClassToResourceDefinitions.put(theClass, resourceDef);
myNameToResourceDefinitions.put(resourceName, resourceDef);
scanCompositeElementForChildren(theClass, resourceDef);
return resourceName;
}
private void scanCompositeElementForChildren(Class<? extends ICompositeElement> theClass, BaseRuntimeCompositeElementDefinition<?> theDefinition) {
Set<String> elementNames = new HashSet<String>();
Map<Integer, BaseRuntimeChildDefinition> orderToElementDef = new HashMap<Integer, BaseRuntimeChildDefinition>();
for (Field next : theClass.getFields()) {
ResourceElement element = next.getAnnotation(ResourceElement.class);
if (element == null) {
ourLog.debug("Ignoring non-type field: " + next.getName());
continue;
}
String elementName = element.name();
int order = element.order();
int min = element.min();
int max = element.max();
ResourceChoiceElement choiceAttr = element.choice();
List<Class<? extends IElement>> choiceTypes = new ArrayList<Class<? extends IElement>>();
for (Class<? extends IElement> nextChoiceType : choiceAttr.types()) {
choiceTypes.add(nextChoiceType);
}
if (orderToElementDef.containsKey(order)) {
throw new ConfigurationException("Detected duplicate field order '" + order + "' in type '" + theClass.getCanonicalName() + "'");
}
if (elementNames.contains(elementName)) {
throw new ConfigurationException("Detected duplicate field name '" + elementName + "' in type '" + theClass.getCanonicalName() + "'");
}
ResourceReferenceElement resRefAnnotation = next.getAnnotation(ResourceReferenceElement.class);
if (choiceTypes.isEmpty() == false) {
List<String> choiceNames = new ArrayList<String>();
for (Class<? extends IElement> nextChoiceType : choiceTypes) {
choiceNames.add(scan(nextChoiceType));
}
RuntimeChildChoiceDefinition def = new RuntimeChildChoiceDefinition(next, elementName, min, max, choiceNames);
orderToElementDef.put(order, def);
} else if (ResourceReference.class.isAssignableFrom(next.getType())) {
if (resRefAnnotation == null) {
throw new ConfigurationException("Field '" + elementName + "' in type '" + theClass.getCanonicalName() + "' is a resource reference but does not have a @" + ResourceReferenceElement.class.getSimpleName() + " annotation");
}
Class<? extends IResource> refType = resRefAnnotation.type();
String elementResourceName = scan(refType);
if (!(myNameToResourceDefinitions.get(elementResourceName) instanceof IResource)) {
throw new ConfigurationException("Resource reference '" + elementName + "' in type '" + theClass.getCanonicalName() + "' is a resource reference but references a non-resource type: "
+ myNameToResourceDefinitions.get(elementResourceName).getClass().getCanonicalName());
}
RuntimeChildResourceDefinition def = new RuntimeChildResourceDefinition(next, elementName, elementResourceName, min, max);
orderToElementDef.put(order, def);
} else {
if (resRefAnnotation != null) {
throw new ConfigurationException("Field '" + elementName + "' in type '" + theClass.getCanonicalName() + "' is not a resource reference but has a @" + ResourceReferenceElement.class.getSimpleName() + " annotation");
}
if (!IDatatype.class.isAssignableFrom(next.getType())) {
throw new ConfigurationException("Field '" + elementName + "' in type '" + theClass.getCanonicalName() + "' is not a resource reference and is not an instance of type " + IDatatype.class.getName());
}
CodeableConceptElement concept = next.getAnnotation(CodeableConceptElement.class);
if (concept != null) {
Class<? extends ICodeEnum> codeType = concept.type();
String codeTableName = scanCodeTable(codeType);
@SuppressWarnings("unchecked")
String datatypeName = scan((Class<? extends IDatatype>) next.getType());
RuntimeChildDatatypeDefinition def = new RuntimeChildCodedDatatypeDefinition(next, elementName, datatypeName, min, max, codeTableName);
orderToElementDef.put(order, def);
} else {
@SuppressWarnings("unchecked")
String datatypeName = scan((Class<? extends IDatatype>) next.getType());
RuntimeChildDatatypeDefinition def = new RuntimeChildDatatypeDefinition(next, elementName, datatypeName, min, max);
orderToElementDef.put(order, def);
}
}
elementNames.add(elementName);
}
for (int i = 0; i < orderToElementDef.size(); i++) {
if (!orderToElementDef.containsKey(i)) {
throw new ConfigurationException("Type '" + theClass.getCanonicalName() + "' does not have a child with order " + i + " (in other words, there are gaps between specified child orders)");
}
BaseRuntimeChildDefinition next = orderToElementDef.get(i);
theDefinition.addChild(next);
}
}
private String scanCodeTable(Class<? extends ICodeEnum> theCodeType) {
// TODO Auto-generated method stub
return null;
}
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/context/RuntimeChildChoiceDefinition.java Normal file
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package ca.uhn.fhir.context;
import java.lang.reflect.Field;
import java.util.List;
public class RuntimeChildChoiceDefinition extends BaseRuntimeChildDefinition {
private List<String> myChoices;
public RuntimeChildChoiceDefinition(Field theField, String theElementName, int theMin, int theMax, List<String> theChoiceNames) {
super(theField, theElementName,theMin,theMax);
myChoices= theChoiceNames;
}
public List<String> getChoices() {
return myChoices;
}
}

19
hapi-fhir-base/src/main/java/ca/uhn/fhir/context/RuntimeChildCodedDatatypeDefinition.java Normal file
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@ -0,0 +1,19 @@
package ca.uhn.fhir.context;
import java.lang.reflect.Field;
public class RuntimeChildCodedDatatypeDefinition extends RuntimeChildDatatypeDefinition {
private String myTableName;
public RuntimeChildCodedDatatypeDefinition(Field theField, String theElementName, String theDatatypeName, int theMin, int theMax, String theTableName) {
super(theField, theElementName,theDatatypeName, theMin,theMax);
myTableName = theTableName;
}
public String getTableName() {
return myTableName;
}
}

19
hapi-fhir-base/src/main/java/ca/uhn/fhir/context/RuntimeChildDatatypeDefinition.java Normal file
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@ -0,0 +1,19 @@
package ca.uhn.fhir.context;
import java.lang.reflect.Field;
public class RuntimeChildDatatypeDefinition extends BaseRuntimeChildDefinition {
private String myDatatypeName;
public RuntimeChildDatatypeDefinition(Field theField, String theElementName, String theDatatypeName, int theMin, int theMax) {
super(theField, theElementName,theMin,theMax);
myDatatypeName = theDatatypeName;
}
public String getDatatypeName() {
return myDatatypeName;
}
}

19
hapi-fhir-base/src/main/java/ca/uhn/fhir/context/RuntimeChildResourceDefinition.java Normal file
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@ -0,0 +1,19 @@
package ca.uhn.fhir.context;
import java.lang.reflect.Field;
public class RuntimeChildResourceDefinition extends BaseRuntimeChildDefinition {
private String myResourceName;
public RuntimeChildResourceDefinition(Field theField, String theElementName, String theResourceName, int theMin, int theMax) {
super(theField, theElementName,theMin,theMax);
myResourceName = theResourceName;
}
public String getResourceName() {
return myResourceName;
}
}

12
hapi-fhir-base/src/main/java/ca/uhn/fhir/context/RuntimeCompositeDatatypeDefinition.java Normal file
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@ -0,0 +1,12 @@
package ca.uhn.fhir.context;
import ca.uhn.fhir.model.api.ICompositeDatatype;
public class RuntimeCompositeDatatypeDefinition extends BaseRuntimeCompositeElementDefinition<ICompositeDatatype> {
public RuntimeCompositeDatatypeDefinition(String theName, Class<? extends ICompositeDatatype> theImplementingClass) {
super(theName, theImplementingClass);
}
}

11
hapi-fhir-base/src/main/java/ca/uhn/fhir/context/RuntimePrimitiveDatatypeDefinition.java Normal file
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@ -0,0 +1,11 @@
package ca.uhn.fhir.context;
import ca.uhn.fhir.model.api.IPrimitiveDatatype;
public class RuntimePrimitiveDatatypeDefinition extends BaseRuntimeElementDefinition<IPrimitiveDatatype>{
public RuntimePrimitiveDatatypeDefinition(String theName, Class<? extends IPrimitiveDatatype> theImplementingClass) {
super(theName, theImplementingClass);
}
}

11
hapi-fhir-base/src/main/java/ca/uhn/fhir/context/RuntimeResourceDefinition.java Normal file
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@ -0,0 +1,11 @@
package ca.uhn.fhir.context;
import ca.uhn.fhir.model.api.IResource;
public class RuntimeResourceDefinition extends BaseRuntimeCompositeElementDefinition<IResource> {
public RuntimeResourceDefinition(Class<? extends IResource> theClass, String theName) {
super(theName, theClass);
}
}

6
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/BaseCompositeDatatype.java Normal file
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@ -0,0 +1,6 @@
package ca.uhn.fhir.model.api;
public class BaseCompositeDatatype extends BaseDatatype implements ICompositeDatatype {
}

6
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/BaseDatatype.java Normal file
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@ -0,0 +1,6 @@
package ca.uhn.fhir.model.api;
public abstract class BaseDatatype implements IDatatype {
}

5
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/BaseElement.java Normal file
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@ -0,0 +1,5 @@
package ca.uhn.fhir.model.api;
public abstract class BaseElement implements IElement {
}

6
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/BasePrimitiveDatatype.java Normal file
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@ -0,0 +1,6 @@
package ca.uhn.fhir.model.api;
public class BasePrimitiveDatatype extends BaseDatatype implements IPrimitiveDatatype {
}

15
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/CodeableConceptElement.java Normal file
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@ -0,0 +1,15 @@
package ca.uhn.fhir.model.api;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(value= {ElementType.FIELD})
public @interface CodeableConceptElement {
Class<? extends ICodeEnum> type();
}

17
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/Constraint.java Normal file
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@ -0,0 +1,17 @@
package ca.uhn.fhir.model.api;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(value= {ElementType.FIELD})
public @interface Constraint {
String[] coRequirements() default {};
String[] lessThan() default {};
String[] greaterThan() default {};
}

14
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/DatatypeDefinition.java Normal file
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@ -0,0 +1,14 @@
package ca.uhn.fhir.model.api;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(value= {ElementType.TYPE})
public @interface DatatypeDefinition {
String name();
}

14
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/Description.java Normal file
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@ -0,0 +1,14 @@
package ca.uhn.fhir.model.api;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(value= {ElementType.FIELD, ElementType.TYPE})
public @interface Description {
String value();
}

15
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/EnumeratedCodeValue.java Normal file
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@ -0,0 +1,15 @@
package ca.uhn.fhir.model.api;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(value= {ElementType.FIELD})
public @interface EnumeratedCodeValue {
String value();
String system() default "";
}

20
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/EnumeratedValueSet.java Normal file
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@ -0,0 +1,20 @@
package ca.uhn.fhir.model.api;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(value= {ElementType.TYPE})
public @interface EnumeratedValueSet {
int tableId();
String name();
int[] restrictedToSnomedIsA() default {};
}

5
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/ICodeEnum.java Normal file
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@ -0,0 +1,5 @@
package ca.uhn.fhir.model.api;
public interface ICodeEnum extends IPrimitiveDatatype {
}

6
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/ICompositeDatatype.java Normal file
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@ -0,0 +1,6 @@
package ca.uhn.fhir.model.api;
public interface ICompositeDatatype extends IDatatype, ICompositeElement {
}

5
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/ICompositeElement.java Normal file
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@ -0,0 +1,5 @@
package ca.uhn.fhir.model.api;
public interface ICompositeElement extends IElement {
}

5
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/IDatatype.java Normal file
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@ -0,0 +1,5 @@
package ca.uhn.fhir.model.api;
public interface IDatatype extends IElement {
}

5
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/IElement.java Normal file
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@ -0,0 +1,5 @@
package ca.uhn.fhir.model.api;
public interface IElement {
}

5
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/IPrimitiveDatatype.java Normal file
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@ -0,0 +1,5 @@
package ca.uhn.fhir.model.api;
public interface IPrimitiveDatatype extends IDatatype {
}

6
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/IResource.java Normal file
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@ -0,0 +1,6 @@
package ca.uhn.fhir.model.api;
public interface IResource extends ICompositeElement {
}

14
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/ResourceChoiceElement.java Normal file
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@ -0,0 +1,14 @@
package ca.uhn.fhir.model.api;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(value= {ElementType.FIELD})
public @interface ResourceChoiceElement {
Class<? extends IDatatype>[] types() default {};
}

28
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/ResourceElement.java Normal file
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@ -0,0 +1,28 @@
package ca.uhn.fhir.model.api;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(value= {ElementType.FIELD})
public @interface ResourceElement {
/**
* Constant value to supply for {@link #order()} when the order is defined
* elsewhere
*/
int ORDER_UNKNOWN = -1;
String name();
int order();
int min() default 0;
int max() default 1;
ResourceChoiceElement choice() default @ResourceChoiceElement();
}

7
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/ResourceReference.java Normal file
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@ -0,0 +1,7 @@
package ca.uhn.fhir.model.api;
import ca.uhn.fhir.model.resource.BaseResource;
public class ResourceReference<T extends BaseResource> {
}

14
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/ResourceReferenceElement.java Normal file
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@ -0,0 +1,14 @@
package ca.uhn.fhir.model.api;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(value= {ElementType.FIELD})
public @interface ResourceReferenceElement {
Class<? extends IResource> type();
}

34
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/AttachmentDt.java Normal file
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@ -0,0 +1,34 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BaseCompositeDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.Description;
import ca.uhn.fhir.model.api.ResourceElement;
@DatatypeDefinition(name="Attachment")
public class AttachmentDt extends BaseCompositeDatatype {
@ResourceElement(name="contentType", order=0, min=1)
private CodeDt myContentType;
@ResourceElement(name="language", order=1)
private CodeDt myLanguage;
@ResourceElement(name="data", order=2)
private Base64BinaryDt myData;
@ResourceElement(name="url", order=3)
private UriDt myUrl;
@ResourceElement(name="size", order=4)
private IntegerDt mySize;
@ResourceElement(name="hash", order=5)
@Description("Hash of the data (sha-1, base64ed )")
private Base64BinaryDt myHash;
@ResourceElement(name="title", order=5)
@Description("Label to display in place of the data")
private StringDt myLabel;
}

11
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/Base64BinaryDt.java Normal file
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@ -0,0 +1,11 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BasePrimitiveDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
@DatatypeDefinition(name="base64Binary")
public class Base64BinaryDt extends BasePrimitiveDatatype {
private byte[] myValue;
}

11
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/BooleanDt.java Normal file
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@ -0,0 +1,11 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BasePrimitiveDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
@DatatypeDefinition(name="boolean")
public class BooleanDt extends BasePrimitiveDatatype {
private boolean myValue;
}

10
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/CodeDt.java Normal file
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@ -0,0 +1,10 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BasePrimitiveDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.ICodeEnum;
@DatatypeDefinition(name="code")
public class CodeDt<T extends ICodeEnum> extends BasePrimitiveDatatype {
}

18
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/CodeableConceptDt.java Normal file
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@ -0,0 +1,18 @@
package ca.uhn.fhir.model.datatype;
import java.util.List;
import ca.uhn.fhir.model.api.BaseCompositeDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.ResourceElement;
import ca.uhn.fhir.model.api.ICodeEnum;
@DatatypeDefinition(name="CodeableConcept")
public class CodeableConceptDt<T extends ICodeEnum> extends BaseCompositeDatatype {
@ResourceElement(name="coding", order=0)
private List<CodingDt> myCoding;
@ResourceElement(name="text",order=1)
private StringDt myText;
}

33
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/CodingDt.java Normal file
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@ -0,0 +1,33 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BaseCompositeDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.ResourceElement;
import ca.uhn.fhir.model.api.ResourceReference;
import ca.uhn.fhir.model.api.ResourceReferenceElement;
import ca.uhn.fhir.model.resource.ValueSet;
@DatatypeDefinition(name="Coding")
public class CodingDt extends BaseCompositeDatatype {
@ResourceElement(name="system", order=0)
private UriDt mySystem;
@ResourceElement(name="version", order=1)
private StringDt myVersion;
@ResourceElement(name="code", order=2)
private CodeDt<?> myCode;
@ResourceElement(name="display", order=3)
private StringDt myDisplay;
@ResourceElement(name="primary", order=4)
private BooleanDt myPrimary;
@ResourceElement(name="valueSet", order=5)
@ResourceReferenceElement(type=ValueSet.class)
private ResourceReference<ValueSet> myAssigner;
}

15
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/DateDt.java Normal file
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@ -0,0 +1,15 @@
package ca.uhn.fhir.model.datatype;
import java.util.GregorianCalendar;
import ca.uhn.fhir.model.api.BaseDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.IPrimitiveDatatype;
@DatatypeDefinition(name="date")
public class DateDt extends BaseDatatype implements IPrimitiveDatatype {
private GregorianCalendar myValue;
private int myPrecision;
}

15
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/DateTimeDt.java Normal file
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@ -0,0 +1,15 @@
package ca.uhn.fhir.model.datatype;
import java.util.GregorianCalendar;
import ca.uhn.fhir.model.api.BasePrimitiveDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
@DatatypeDefinition(name="dateTime")
public class DateTimeDt extends BasePrimitiveDatatype {
private GregorianCalendar myValue;
private int myPrecision;
}

13
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/DecimalDt.java Normal file
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@ -0,0 +1,13 @@
package ca.uhn.fhir.model.datatype;
import java.math.BigDecimal;
import ca.uhn.fhir.model.api.BasePrimitiveDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
@DatatypeDefinition(name="decimal")
public class DecimalDt extends BasePrimitiveDatatype {
private BigDecimal myValue;
}

35
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/IdentifierDt.java Normal file
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@ -0,0 +1,35 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BaseCompositeDatatype;
import ca.uhn.fhir.model.api.CodeableConceptElement;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.ResourceElement;
import ca.uhn.fhir.model.api.ResourceReference;
import ca.uhn.fhir.model.api.ResourceReferenceElement;
import ca.uhn.fhir.model.enm.IdentifierUseEnum;
import ca.uhn.fhir.model.resource.Organization;
@DatatypeDefinition(name="identifier")
public class IdentifierDt extends BaseCompositeDatatype {
@ResourceElement(name="use", order=0)
@CodeableConceptElement(type=IdentifierUseEnum.class)
private CodeDt<IdentifierUseEnum> myUse;
@ResourceElement(name="label", order=1)
private StringDt myLabel;
@ResourceElement(name="system", order=2)
private UriDt mySystem;
@ResourceElement(name="value", order=3)
private StringDt myValue;
@ResourceElement(name="period", order=4)
private PeriodDt myPeriod;
@ResourceElement(name="assigner", order=5)
@ResourceReferenceElement(type=Organization.class)
private ResourceReference<Organization> myAssigner;
}

13
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/InstantDt.java Normal file
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@ -0,0 +1,13 @@
package ca.uhn.fhir.model.datatype;
import java.util.Date;
import ca.uhn.fhir.model.api.BasePrimitiveDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
@DatatypeDefinition(name="instant")
public class InstantDt extends BasePrimitiveDatatype {
private Date myValue;
}

11
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/IntegerDt.java Normal file
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@ -0,0 +1,11 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BasePrimitiveDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
@DatatypeDefinition(name="integer")
public class IntegerDt extends BasePrimitiveDatatype {
private int myValue;
}

19
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/PeriodDt.java Normal file
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@ -0,0 +1,19 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BaseCompositeDatatype;
import ca.uhn.fhir.model.api.Constraint;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.ResourceElement;
@DatatypeDefinition(name="Period")
public class PeriodDt extends BaseCompositeDatatype {
@ResourceElement(name="start", order=0)
@Constraint(lessThan= {"end"})
private DateTimeDt myStart;
@ResourceElement(name="end", order=1)
@Constraint(greaterThan= {"start"})
private DateTimeDt myEnd;
}

29
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/QuantityDt.java Normal file
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@ -0,0 +1,29 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BaseCompositeDatatype;
import ca.uhn.fhir.model.api.Constraint;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.ResourceElement;
import ca.uhn.fhir.model.enm.QuantityComparator;
@DatatypeDefinition(name="Quantity")
public class QuantityDt extends BaseCompositeDatatype {
@ResourceElement(name="value",order=0, min=0, max=1)
private DecimalDt myValue;
@ResourceElement(name="comparator",order=1, min=0, max=1)
private QuantityComparator myComparator;
@ResourceElement(name="units",order=2, min=0, max=1)
private StringDt myUnits;
@ResourceElement(name="system",order=3, min=0, max=1)
@Constraint(coRequirements= {"code"})
private UriDt mySystem;
@ResourceElement(name="code",order=4, min=0, max=1)
@Constraint(coRequirements= {"system"})
private CodeDt myCode;
}

18
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/RatioDt.java Normal file
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@ -0,0 +1,18 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BaseCompositeDatatype;
import ca.uhn.fhir.model.api.Constraint;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.ResourceElement;
@DatatypeDefinition(name="Ratio")
public class RatioDt extends BaseCompositeDatatype {
@ResourceElement(name="numerator", order=0)
@Constraint(coRequirements= {"denominator"})
private QuantityDt myNumerator;
@ResourceElement(name="denominator", order=1)
@Constraint(coRequirements= {"numerator"})
private QuantityDt myDenominator;
}

32
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/SampledDataDt.java Normal file
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@ -0,0 +1,32 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BaseCompositeDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.ResourceElement;
import ca.uhn.fhir.model.api.Description;
@DatatypeDefinition(name="SampledData")
public class SampledDataDt extends BaseCompositeDatatype {
@ResourceElement(name="origin", order=0, min=1)
private QuantityDt myOrigin;
@ResourceElement(name="period", order=1, min=1)
private DecimalDt myPeriod;
@ResourceElement(name="factor", order=2)
private DecimalDt myFactor;
@ResourceElement(name="lowerLimit", order=3)
private DecimalDt myLowerLimit;
@ResourceElement(name="upperLimit", order=4)
private DecimalDt myUpperLimit;
@ResourceElement(name="dimensions", order=5, min=1)
private IntegerDt myDimensions;
@ResourceElement(name="data", order=6, min=1)
@Description("Decimal values with spaces, or \"E\" | \"U\" | \"L\"")
private StringDt myData;
}

11
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/StringDt.java Normal file
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@ -0,0 +1,11 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BasePrimitiveDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
@DatatypeDefinition(name="string")
public class StringDt extends BasePrimitiveDatatype {
private String myValue;
}

12
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/datatype/UriDt.java Normal file
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@ -0,0 +1,12 @@
package ca.uhn.fhir.model.datatype;
import ca.uhn.fhir.model.api.BaseDatatype;
import ca.uhn.fhir.model.api.DatatypeDefinition;
import ca.uhn.fhir.model.api.IPrimitiveDatatype;
@DatatypeDefinition(name="uri")
public class UriDt extends BaseDatatype implements IPrimitiveDatatype {
private String myValue;
}

9
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/enm/BodySiteEnum.java Normal file
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@ -0,0 +1,9 @@
package ca.uhn.fhir.model.enm;
import ca.uhn.fhir.model.api.EnumeratedValueSet;
import ca.uhn.fhir.model.api.ICodeEnum;
@EnumeratedValueSet(name="body-site", tableId=62, restrictedToSnomedIsA= {91723000})
public enum BodySiteEnum implements ICodeEnum {
}

25
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/enm/IdentifierUseEnum.java Normal file
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package ca.uhn.fhir.model.enm;
import ca.uhn.fhir.model.api.Description;
import ca.uhn.fhir.model.api.EnumeratedCodeValue;
import ca.uhn.fhir.model.api.EnumeratedValueSet;
import ca.uhn.fhir.model.api.ICodeEnum;
@EnumeratedValueSet(name="identifier-use", tableId=13)
public enum IdentifierUseEnum implements ICodeEnum {
@EnumeratedCodeValue("usual")
@Description("the identifier recommended for display and use in real-world interactions.")
USUAL,
@EnumeratedCodeValue("official")
@Description("the identifier considered to be most trusted for the identification of this item.")
OFFICIAL,
@EnumeratedCodeValue("temp")
@Description("A temporary identifier.")
TEMP,
@EnumeratedCodeValue("secondary")
@Description("An identifier that was assigned in secondary use - it serves to identify the object in a relative context, but cannot be consistently assigned to the same object again in a different context.")
SECONDARY
}

9
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/enm/ObservationCodesEnum.java Normal file
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package ca.uhn.fhir.model.enm;
import ca.uhn.fhir.model.api.EnumeratedValueSet;
import ca.uhn.fhir.model.api.ICodeEnum;
@EnumeratedValueSet(name="observation-codes", tableId=115)
public enum ObservationCodesEnum implements ICodeEnum {
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/model/enm/ObservationInterpretationEnum.java Normal file
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package ca.uhn.fhir.model.enm;
import ca.uhn.fhir.model.api.Description;
import ca.uhn.fhir.model.api.EnumeratedCodeValue;
import ca.uhn.fhir.model.api.EnumeratedValueSet;
import ca.uhn.fhir.model.api.ICodeEnum;
@EnumeratedValueSet(tableId = 117, name = "observation-interpretation")
public enum ObservationInterpretationEnum implements ICodeEnum {
@EnumeratedCodeValue(value = "<", system = "http://hl7.org/fhir/v2/0078")
@Description("Below absolute low-off instrument scale")
BELOW_ABSOLUTE_LOW,
@EnumeratedCodeValue(value = ">", system = "http://hl7.org/fhir/v2/0078")
@Description("Above absolute high-off instrument scale")
ABOVE_ABSOLUTE_HIGH,
@EnumeratedCodeValue(value = "A", system = "http://hl7.org/fhir/v2/0078")
@Description("Abnormal (applies to non-numeric results)")
A,
@EnumeratedCodeValue(value = "AA", system = "http://hl7.org/fhir/v2/0078")
@Description("Very abnormal (applies to non-numeric units, analogous to panic limits for numeric units)")
AA,
@EnumeratedCodeValue(value = "AC", system = "http://hl7.org/fhir/v2/0078")
@Description("Anti-complementary substances present")
AC,
@EnumeratedCodeValue(value = "B", system = "http://hl7.org/fhir/v2/0078")
@Description("Better-use when direction not relevant")
B,
@EnumeratedCodeValue(value = "D", system = "http://hl7.org/fhir/v2/0078")
@Description("Significant change down")
D,
@EnumeratedCodeValue(value = "DET", system = "http://hl7.org/fhir/v2/0078")
@Description("Detected")
DET,
@EnumeratedCodeValue(value = "H", system = "http://hl7.org/fhir/v2/0078")
@Description("Above high normal")
H,
@EnumeratedCodeValue(value = "HH", system = "http://hl7.org/fhir/v2/0078")
@Description("Above upper panic limits")
HH,
@EnumeratedCodeValue(value = "I", system = "http://hl7.org/fhir/v2/0078")
@Description("Intermediate. Indicates for microbiology susceptibilities only.")
I,
@EnumeratedCodeValue(value = "IND", system = "http://hl7.org/fhir/v2/0078")
@Description("Indeterminate")
IND,
@EnumeratedCodeValue(value = "L", system = "http://hl7.org/fhir/v2/0078")
@Description("Below low normal")
L,
@EnumeratedCodeValue(value = "LL", system = "http://hl7.org/fhir/v2/0078")
@Description("Below lower panic limits")
LL, @EnumeratedCodeValue(value = "MS", system = "http://hl7.org/fhir/v2/0078")
@Description("Moderately susceptible. Indicates for microbiology susceptibilities only.")
MS,
@EnumeratedCodeValue(value = "N", system = "http://hl7.org/fhir/v2/0078")
@Description("Normal (applies to non-numeric results)")
N,
@EnumeratedCodeValue(value = "ND", system = "http://hl7.org/fhir/v2/0078")
@Description("Not Detected")
ND,
@EnumeratedCodeValue(value = "NEG", system = "http://hl7.org/fhir/v2/0078")
@Description("Negative")
NEG, @EnumeratedCodeValue(value = "NR", system = "http://hl7.org/fhir/v2/0078")
@Description("Non-reactive")
NR,
@EnumeratedCodeValue(value = "POS", system = "http://hl7.org/fhir/v2/0078")
@Description("Positive")
POS,
@EnumeratedCodeValue(value = "QCF", system = "http://hl7.org/fhir/v2/0078")
@Description("Quality Control Failure")
QCF,
@EnumeratedCodeValue(value = "R", system = "http://hl7.org/fhir/v2/0078")
@Description("Resistant. Indicates for microbiology susceptibilities only.")
R,
@EnumeratedCodeValue(value = "RR", system = "http://hl7.org/fhir/v2/0078")
@Description("Reactive")
RR,
@EnumeratedCodeValue(value = "S", system = "http://hl7.org/fhir/v2/0078")
@Description("Susceptible. Indicates for microbiology susceptibilities only.")
S,
@EnumeratedCodeValue(value = "TOX", system = "http://hl7.org/fhir/v2/0078")
@Description("Cytotoxic substance present")
TOX,
@EnumeratedCodeValue(value = "U", system = "http://hl7.org/fhir/v2/0078")
@Description("Significant change up")
U,
@EnumeratedCodeValue(value = "VS", system = "http://hl7.org/fhir/v2/0078")
@Description("Very susceptible. Indicates for microbiology susceptibilities only.")
VS,
@EnumeratedCodeValue(value = "W", system = "http://hl7.org/fhir/v2/0078")
@Description("Worse-use when direction not relevant")
W,
@EnumeratedCodeValue(value = "WR", system = "http://hl7.org/fhir/v2/0078")
@Description("Weakly reactive")
WR,
@EnumeratedCodeValue(value = "null", system = "http://hl7.org/fhir/v2/0078")
@Description("No range defined, or normal ranges don't apply")
NULL
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/model/enm/ObservationMethodEnum.java Normal file
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package ca.uhn.fhir.model.enm;
import ca.uhn.fhir.model.api.EnumeratedValueSet;
import ca.uhn.fhir.model.api.ICodeEnum;
@EnumeratedValueSet(tableId=114, name="observation-method")
public enum ObservationMethodEnum implements ICodeEnum {
}

39
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/enm/ObservationReliabilityEnum.java Normal file
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package ca.uhn.fhir.model.enm;
import ca.uhn.fhir.model.api.Description;
import ca.uhn.fhir.model.api.EnumeratedCodeValue;
import ca.uhn.fhir.model.api.EnumeratedValueSet;
import ca.uhn.fhir.model.api.ICodeEnum;
@EnumeratedValueSet(tableId=118, name="observation-reliability")
public enum ObservationReliabilityEnum implements ICodeEnum {
@Description("The result has no reliability concerns.")
@EnumeratedCodeValue("ok")
OK,
@Description("An early estimate of value; measurement is still occurring.")
@EnumeratedCodeValue("ongoing")
ONGOING,
@Description("An early estimate of value; processing is still occurring.")
@EnumeratedCodeValue("early")
EARLY,
@Description("The observation value should be treated with care.")
@EnumeratedCodeValue("questionable")
QUESTIONABLE,
@Description("The result has been generated while calibration is occurring.")
@EnumeratedCodeValue("calibrating")
CALIBRATING,
@Description("The observation could not be completed because of an error.")
@EnumeratedCodeValue("error")
ERROR,
@Description("No observation value was available.")
@EnumeratedCodeValue("unknown")
UNKNOWN
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/model/enm/ObservationStatusEnum.java Normal file
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package ca.uhn.fhir.model.enm;
import ca.uhn.fhir.model.api.Description;
import ca.uhn.fhir.model.api.EnumeratedCodeValue;
import ca.uhn.fhir.model.api.EnumeratedValueSet;
import ca.uhn.fhir.model.api.ICodeEnum;
@EnumeratedValueSet(tableId=7, name="observation-status")
public enum ObservationStatusEnum implements ICodeEnum {
@Description("The existence of the observation is registered, but there is no result yet available")
@EnumeratedCodeValue("registered")
REGISTERED,
@Description("This is an initial or interim observation: data may be incomplete or unverified")
@EnumeratedCodeValue("interim")
INTERIM,
@Description("The observation is complete and verified by an authorised person")
@EnumeratedCodeValue("final")
FINAL,
@Description("The observation has been modified subsequent to being Final, and is complete and verified by an authorised person")
@EnumeratedCodeValue("amended")
AMENDED,
@Description("The observation is unavailable because the measurement was not started or not completed (also sometimes called \"aborted\")")
@EnumeratedCodeValue("cancelled")
CANCELLED,
@Description("The observation has been withdrawn following previous Final release")
@EnumeratedCodeValue("withdrawn")
WITHDRAWN
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/model/enm/QuantityComparator.java Normal file
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package ca.uhn.fhir.model.enm;
import ca.uhn.fhir.model.api.Description;
import ca.uhn.fhir.model.api.EnumeratedCodeValue;
import ca.uhn.fhir.model.api.EnumeratedValueSet;
import ca.uhn.fhir.model.api.ICodeEnum;
@EnumeratedValueSet(tableId=14, name="quantity-comparator")
public enum QuantityComparator implements ICodeEnum {
@EnumeratedCodeValue("<")
@Description("The actual value is less than the given value.")
LESSTHAN,
@EnumeratedCodeValue("<=")
@Description("The actual value is less than or equal to the given value.")
LESSTHAN_OR_EQUAL,
@EnumeratedCodeValue(">=")
@Description("The actual value is greater than or equal to the given value.")
GREATERTHAN_OR_EQUAL,
@EnumeratedCodeValue(">")
@Description("The actual value is greater than the given value.")
GREATERTHAN;
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/model/resource/BaseResource.java Normal file
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package ca.uhn.fhir.model.resource;
import ca.uhn.fhir.model.api.BaseElement;
import ca.uhn.fhir.model.api.IResource;
public class BaseResource extends BaseElement implements IResource {
}

14
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/resource/BaseResourceWithIdentifier.java Normal file
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package ca.uhn.fhir.model.resource;
import ca.uhn.fhir.model.api.ResourceElement;
import ca.uhn.fhir.model.datatype.IdentifierDt;
/**
* Classes extending this class must be annotated with
*/
public class BaseResourceWithIdentifier extends BaseResource {
@ResourceElement(name="identifier", order=ResourceElement.ORDER_UNKNOWN)
private IdentifierDt myIdentifier;
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/model/resource/Observation.java Normal file
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package ca.uhn.fhir.model.resource;
import ca.uhn.fhir.model.api.CodeableConceptElement;
import ca.uhn.fhir.model.api.IDatatype;
import ca.uhn.fhir.model.api.ResourceChoiceElement;
import ca.uhn.fhir.model.api.ResourceElement;
import ca.uhn.fhir.model.datatype.AttachmentDt;
import ca.uhn.fhir.model.datatype.CodeableConceptDt;
import ca.uhn.fhir.model.datatype.DateTimeDt;
import ca.uhn.fhir.model.datatype.InstantDt;
import ca.uhn.fhir.model.datatype.PeriodDt;
import ca.uhn.fhir.model.datatype.QuantityDt;
import ca.uhn.fhir.model.datatype.RatioDt;
import ca.uhn.fhir.model.datatype.SampledDataDt;
import ca.uhn.fhir.model.datatype.StringDt;
import ca.uhn.fhir.model.enm.BodySiteEnum;
import ca.uhn.fhir.model.enm.ObservationCodesEnum;
import ca.uhn.fhir.model.enm.ObservationInterpretationEnum;
import ca.uhn.fhir.model.enm.ObservationMethodEnum;
import ca.uhn.fhir.model.enm.ObservationStatusEnum;
@ResourceDefinition(name="Observation", identifierOrder=10)
public class Observation extends BaseResourceWithIdentifier {
@ResourceElement(name="name", order=0, min=1, max=1)
@CodeableConceptElement(type=ObservationCodesEnum.class)
private CodeableConceptDt<ObservationCodesEnum> myName;
@ResourceElement(name="value", order=1, min=0, max=1, choice=@ResourceChoiceElement(types= {
QuantityDt.class,
CodeableConceptDt.class,
AttachmentDt.class,
RatioDt.class,
PeriodDt.class,
SampledDataDt.class,
StringDt.class
}))
private IDatatype myValue;
@ResourceElement(name="interpretation", order=2)
@CodeableConceptElement(type=ObservationInterpretationEnum.class)
private CodeableConceptDt<ObservationInterpretationEnum> myInterpretation;
@ResourceElement(name="comments", order=3)
private StringDt myComments;
@ResourceElement(name="applies", order=4, choice=@ResourceChoiceElement(types={
DateTimeDt.class,
PeriodDt.class
}))
private IDatatype myApplies;
@ResourceElement(name="issued", order=5)
private InstantDt myIssued;
@ResourceElement(name="status", order=6, min=1)
@CodeableConceptElement(type=ObservationStatusEnum.class)
private CodeableConceptDt<ObservationStatusEnum> myStatus;
@ResourceElement(name="reliability", order=7, min=1)
@CodeableConceptElement(type=ObservationStatusEnum.class)
private CodeableConceptDt<ObservationStatusEnum> myReliability;
@ResourceElement(name="bodySite", order=8)
@CodeableConceptElement(type=BodySiteEnum.class)
private CodeableConceptDt<BodySiteEnum> myBodySite;
@ResourceElement(name="method", order=9)
@CodeableConceptElement(type=ObservationMethodEnum.class)
private CodeableConceptDt<ObservationMethodEnum> myMethod;
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/model/resource/Organization.java Normal file
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package ca.uhn.fhir.model.resource;
public class Organization extends BaseResource {
//TODO: fill in
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/model/resource/ResourceDefinition.java Normal file
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package ca.uhn.fhir.model.resource;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(value= {ElementType.TYPE})
public @interface ResourceDefinition {
int ORDER_NOT_SPECIFIED = -1;
String name();
int identifierOrder() default ORDER_NOT_SPECIFIED;
}

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hapi-fhir-base/src/main/java/ca/uhn/fhir/model/resource/ValueSet.java Normal file
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package ca.uhn.fhir.model.resource;
public class ValueSet extends BaseResource {
}

17
hapi-fhir-base/src/test/java/ca/uhn/fhir/context/ModelScannerTest.java Normal file
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package ca.uhn.fhir.context;
import org.junit.Test;
import ca.uhn.fhir.model.resource.Observation;
public class ModelScannerTest {
@Test
public void testScanner() {
ModelScanner scanner = new ModelScanner(Observation.class);
}
}

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pom.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<parent>
<groupId>org.sonatype.oss</groupId>
<artifactId>oss-parent</artifactId>
<version>6</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<packaging>pom</packaging>
<version>1.0-SNAPSHOT</version>
<name>HAPI</name>
<url>http://hl7api.sourceforge.net/</url>
<description>
</description>
<dependencies>
</dependencies>
<modules>
<module>hapi-fhir-base</module>
</modules>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<slf4j_version>1.6.6</slf4j_version>
</properties>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.1</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
</plugins>
</pluginManagement>
</build>
</project>