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hapi-fhir
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Header fixes

This commit is contained in:
James 2017-03-18 09:38:33 -04:00
parent d009e836bb
commit 8e800a10b7
13 changed files with 23994 additions and 23994 deletions
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84
hapi-fhir-base/src/main/java/org/hl7/fhir/utilities/TranslatingUtilities.java
View File

@ -20,45 +20,45 @@ package org.hl7.fhir.utilities;
* #L%
*/
import java.util.Date;
public class TranslatingUtilities {
public interface TranslationServices {
String translate(String context, String value);
String translate(String context, String value, Object... args);
String toStr(int value);
String toStr(Date value);
}
private TranslationServices translator;
public TranslationServices getTranslator() {
return translator;
}
public void setTranslator(TranslationServices translator) {
this.translator = translator;
}
protected String translate(String context, String value) {
return hasTranslator() ? translator.translate(context, value) : value;
}
protected String translate(String context, String value, Object... args) {
return hasTranslator() ? translator.translate(context, value, args) : String.format(value, args);
}
protected boolean hasTranslator() {
return translator != null;
}
public String toStr(int value) {
return hasTranslator() ? translator.toStr(value) : Integer.toString(value);
}
public String toStr(Date value) {
return hasTranslator() ? translator.toStr(value) : value.toString();
}
}
import java.util.Date;
public class TranslatingUtilities {
public interface TranslationServices {
String translate(String context, String value);
String translate(String context, String value, Object... args);
String toStr(int value);
String toStr(Date value);
}
private TranslationServices translator;
public TranslationServices getTranslator() {
return translator;
}
public void setTranslator(TranslationServices translator) {
this.translator = translator;
}
protected String translate(String context, String value) {
return hasTranslator() ? translator.translate(context, value) : value;
}
protected String translate(String context, String value, Object... args) {
return hasTranslator() ? translator.translate(context, value, args) : String.format(value, args);
}
protected boolean hasTranslator() {
return translator != null;
}
public String toStr(int value) {
return hasTranslator() ? translator.toStr(value) : Integer.toString(value);
}
public String toStr(Date value) {
return hasTranslator() ? translator.toStr(value) : value.toString();
}
}

1412
hapi-fhir-base/src/main/java/org/hl7/fhir/utilities/validation/ValidationMessage.java
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File diff suppressed because it is too large Load Diff

694
hapi-fhir-base/src/main/java/org/hl7/fhir/utilities/xhtml/XhtmlComposer.java
View File

@ -1,31 +1,31 @@
/*
Copyright (c) 2011+, HL7, Inc
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
/*
Copyright (c) 2011+, HL7, Inc
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
package org.hl7.fhir.utilities.xhtml;
/*
@ -48,322 +48,322 @@ package org.hl7.fhir.utilities.xhtml;
* #L%
*/
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStream;
import java.io.OutputStreamWriter;
import java.io.StringWriter;
import java.io.UnsupportedEncodingException;
import java.io.Writer;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.xml.IXMLWriter;
import org.w3c.dom.Element;
public class XhtmlComposer {
public static final String XHTML_NS = "http://www.w3.org/1999/xhtml";
private boolean pretty;
private boolean xmlOnly;
public boolean isPretty() {
return pretty;
}
public XhtmlComposer setPretty(boolean pretty) {
this.pretty = pretty;
return this;
}
public boolean isXmlOnly() {
return xmlOnly;
}
public XhtmlComposer setXmlOnly(boolean xmlOnly) {
this.xmlOnly = xmlOnly;
return this;
}
private Writer dst;
public String compose(XhtmlDocument doc) throws IOException {
StringWriter sdst = new StringWriter();
dst = sdst;
composeDoc(doc);
return sdst.toString();
}
public String compose(XhtmlNode node) throws IOException {
StringWriter sdst = new StringWriter();
dst = sdst;
writeNode("", node);
return sdst.toString();
}
public void compose(OutputStream stream, XhtmlDocument doc) throws IOException {
byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF };
stream.write(bom);
dst = new OutputStreamWriter(stream, "UTF-8");
composeDoc(doc);
dst.flush();
}
private void composeDoc(XhtmlDocument doc) throws IOException {
// headers....
// dst.append("<html>" + (isPretty() ? "\r\n" : ""));
for (XhtmlNode c : doc.getChildNodes())
writeNode(" ", c);
// dst.append("</html>" + (isPretty() ? "\r\n" : ""));
}
private void writeNode(String indent, XhtmlNode node) throws IOException {
if (node.getNodeType() == NodeType.Comment)
writeComment(indent, node);
else if (node.getNodeType() == NodeType.DocType)
writeDocType(node);
else if (node.getNodeType() == NodeType.Instruction)
writeInstruction(node);
else if (node.getNodeType() == NodeType.Element)
writeElement(indent, node);
else if (node.getNodeType() == NodeType.Document)
writeDocument(indent, node);
else if (node.getNodeType() == NodeType.Text)
writeText(node);
else if (node.getNodeType() == null)
throw new IOException("Null node type");
else
throw new IOException("Unknown node type: "+node.getNodeType().toString());
}
private void writeText(XhtmlNode node) throws IOException {
for (char c : node.getContent().toCharArray())
{
if (c == '&')
dst.append("&amp;");
else if (c == '<')
dst.append("&lt;");
else if (c == '>')
dst.append("&gt;");
else if (c == '"')
dst.append("&quot;");
else if (xmlOnly) {
dst.append(c);
} else {
if (c == XhtmlNode.NBSP.charAt(0))
dst.append("&nbsp;");
else if (c == (char) 0xA7)
dst.append("&sect;");
else if (c == (char) 169)
dst.append("&copy;");
else if (c == (char) 8482)
dst.append("&trade;");
else if (c == (char) 956)
dst.append("&mu;");
else if (c == (char) 174)
dst.append("&reg;");
else
dst.append(c);
}
}
}
private void writeComment(String indent, XhtmlNode node) throws IOException {
dst.append(indent + "<!-- " + node.getContent().trim() + " -->" + (isPretty() ? "\r\n" : ""));
}
private void writeDocType(XhtmlNode node) throws IOException {
dst.append("<!" + node.getContent() + ">\r\n");
}
private void writeInstruction(XhtmlNode node) throws IOException {
dst.append("<?" + node.getContent() + "?>\r\n");
}
private String escapeHtml(String s) {
if (s == null || s.equals(""))
return null;
StringBuilder b = new StringBuilder();
for (char c : s.toCharArray())
if (c == '<')
b.append("&lt;");
else if (c == '>')
b.append("&gt;");
else if (c == '"')
b.append("&quot;");
else if (c == '&')
b.append("&amp;");
else
b.append(c);
return b.toString();
}
private String attributes(XhtmlNode node) {
StringBuilder s = new StringBuilder();
for (String n : node.getAttributes().keySet())
s.append(" " + n + "=\"" + escapeHtml(node.getAttributes().get(n)) + "\"");
return s.toString();
}
private void writeElement(String indent, XhtmlNode node) throws IOException {
if (!pretty)
indent = "";
if (node.getChildNodes().size() == 0)
dst.append(indent + "<" + node.getName() + attributes(node) + "/>" + (isPretty() ? "\r\n" : ""));
else {
boolean act = node.allChildrenAreText();
if (act || !pretty)
dst.append(indent + "<" + node.getName() + attributes(node)+">");
else
dst.append(indent + "<" + node.getName() + attributes(node) + ">\r\n");
if (node.getName() == "head" && node.getElement("meta") == null)
dst.append(indent + " <meta http-equiv=\"Content-Type\" content=\"text/html; charset=UTF-8\"/>" + (isPretty() ? "\r\n" : ""));
for (XhtmlNode c : node.getChildNodes())
writeNode(indent + " ", c);
if (act)
dst.append("</" + node.getName() + ">" + (isPretty() ? "\r\n" : ""));
else if (node.getChildNodes().get(node.getChildNodes().size() - 1).getNodeType() == NodeType.Text)
dst.append((isPretty() ? "\r\n"+ indent : "") + "</" + node.getName() + ">" + (isPretty() ? "\r\n" : ""));
else
dst.append(indent + "</" + node.getName() + ">" + (isPretty() ? "\r\n" : ""));
}
}
private void writeDocument(String indent, XhtmlNode node) throws IOException {
indent = "";
for (XhtmlNode c : node.getChildNodes())
writeNode(indent, c);
}
public void compose(IXMLWriter xml, XhtmlNode node) throws IOException {
if (node.getNodeType() == NodeType.Comment)
xml.comment(node.getContent(), isPretty());
else if (node.getNodeType() == NodeType.Element)
composeElement(xml, node);
else if (node.getNodeType() == NodeType.Text)
xml.text(node.getContent());
else
throw new Error("Unhandled node type: "+node.getNodeType().toString());
}
private void composeElement(IXMLWriter xml, XhtmlNode node) throws IOException {
for (String n : node.getAttributes().keySet()) {
if (n.equals("xmlns"))
xml.setDefaultNamespace(node.getAttributes().get(n));
else if (n.startsWith("xmlns:"))
xml.namespace(n.substring(6), node.getAttributes().get(n));
else
xml.attribute(n, node.getAttributes().get(n));
}
xml.enter(XHTML_NS, node.getName());
for (XhtmlNode n : node.getChildNodes())
compose(xml, n);
xml.exit(XHTML_NS, node.getName());
}
public String composePlainText(XhtmlNode x) {
StringBuilder b = new StringBuilder();
composePlainText(x, b, false);
return b.toString().trim();
}
private boolean composePlainText(XhtmlNode x, StringBuilder b, boolean lastWS) {
if (x.getNodeType() == NodeType.Text) {
String s = x.getContent();
if (!lastWS & (s.startsWith(" ") || s.startsWith("\r") || s.startsWith("\n") || s.endsWith("\t"))) {
b.append(" ");
lastWS = true;
}
String st = s.trim().replace("\r", " ").replace("\n", " ").replace("\t", " ");
while (st.contains(" "))
st = st.replace(" ", " ");
if (!Utilities.noString(st)) {
b.append(st);
lastWS = false;
if (!lastWS & (s.endsWith(" ") || s.endsWith("\r") || s.endsWith("\n") || s.endsWith("\t"))) {
b.append(" ");
lastWS = true;
}
}
return lastWS;
} else if (x.getNodeType() == NodeType.Element) {
if (x.getName().equals("li")) {
b.append("* ");
lastWS = true;
}
for (XhtmlNode n : x.getChildNodes()) {
lastWS = composePlainText(n, b, lastWS);
}
if (x.getName().equals("p")) {
b.append("\r\n\r\n");
lastWS = true;
}
if (x.getName().equals("br") || x.getName().equals("li")) {
b.append("\r\n");
lastWS = true;
}
return lastWS;
} else
return lastWS;
}
public void compose(Element div, XhtmlNode x) {
for (XhtmlNode child : x.getChildNodes()) {
appendChild(div, child);
}
}
private void appendChild(Element e, XhtmlNode node) {
if (node.getNodeType() == NodeType.Comment)
e.appendChild(e.getOwnerDocument().createComment(node.getContent()));
else if (node.getNodeType() == NodeType.DocType)
throw new Error("not done yet");
else if (node.getNodeType() == NodeType.Instruction)
e.appendChild(e.getOwnerDocument().createProcessingInstruction("", node.getContent()));
else if (node.getNodeType() == NodeType.Text)
e.appendChild(e.getOwnerDocument().createTextNode(node.getContent()));
else if (node.getNodeType() == NodeType.Element) {
Element child = e.getOwnerDocument().createElementNS(XHTML_NS, node.getName());
e.appendChild(child);
for (XhtmlNode c : node.getChildNodes()) {
appendChild(child, c);
}
} else
throw new Error("Unknown node type: "+node.getNodeType().toString());
}
public void compose(OutputStream stream, XhtmlNode x) throws IOException {
byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF };
stream.write(bom);
dst = new OutputStreamWriter(stream, "UTF-8");
dst.append("<html><head><link rel=\"stylesheet\" href=\"fhir.css\"/></head><body>\r\n");
writeNode("", x);
dst.append("</body></html>\r\n");
dst.flush();
}
public void composeDocument(FileOutputStream f, XhtmlNode xhtml) throws IOException {
byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF };
f.write(bom);
dst = new OutputStreamWriter(f, "UTF-8");
writeNode("", xhtml);
dst.flush();
dst.close();
}
public String composeEx(XhtmlNode node) {
try {
return compose(node);
} catch (IOException e) {
throw new Error(e);
}
}
}
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStream;
import java.io.OutputStreamWriter;
import java.io.StringWriter;
import java.io.UnsupportedEncodingException;
import java.io.Writer;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.xml.IXMLWriter;
import org.w3c.dom.Element;
public class XhtmlComposer {
public static final String XHTML_NS = "http://www.w3.org/1999/xhtml";
private boolean pretty;
private boolean xmlOnly;
public boolean isPretty() {
return pretty;
}
public XhtmlComposer setPretty(boolean pretty) {
this.pretty = pretty;
return this;
}
public boolean isXmlOnly() {
return xmlOnly;
}
public XhtmlComposer setXmlOnly(boolean xmlOnly) {
this.xmlOnly = xmlOnly;
return this;
}
private Writer dst;
public String compose(XhtmlDocument doc) throws IOException {
StringWriter sdst = new StringWriter();
dst = sdst;
composeDoc(doc);
return sdst.toString();
}
public String compose(XhtmlNode node) throws IOException {
StringWriter sdst = new StringWriter();
dst = sdst;
writeNode("", node);
return sdst.toString();
}
public void compose(OutputStream stream, XhtmlDocument doc) throws IOException {
byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF };
stream.write(bom);
dst = new OutputStreamWriter(stream, "UTF-8");
composeDoc(doc);
dst.flush();
}
private void composeDoc(XhtmlDocument doc) throws IOException {
// headers....
// dst.append("<html>" + (isPretty() ? "\r\n" : ""));
for (XhtmlNode c : doc.getChildNodes())
writeNode(" ", c);
// dst.append("</html>" + (isPretty() ? "\r\n" : ""));
}
private void writeNode(String indent, XhtmlNode node) throws IOException {
if (node.getNodeType() == NodeType.Comment)
writeComment(indent, node);
else if (node.getNodeType() == NodeType.DocType)
writeDocType(node);
else if (node.getNodeType() == NodeType.Instruction)
writeInstruction(node);
else if (node.getNodeType() == NodeType.Element)
writeElement(indent, node);
else if (node.getNodeType() == NodeType.Document)
writeDocument(indent, node);
else if (node.getNodeType() == NodeType.Text)
writeText(node);
else if (node.getNodeType() == null)
throw new IOException("Null node type");
else
throw new IOException("Unknown node type: "+node.getNodeType().toString());
}
private void writeText(XhtmlNode node) throws IOException {
for (char c : node.getContent().toCharArray())
{
if (c == '&')
dst.append("&amp;");
else if (c == '<')
dst.append("&lt;");
else if (c == '>')
dst.append("&gt;");
else if (c == '"')
dst.append("&quot;");
else if (xmlOnly) {
dst.append(c);
} else {
if (c == XhtmlNode.NBSP.charAt(0))
dst.append("&nbsp;");
else if (c == (char) 0xA7)
dst.append("&sect;");
else if (c == (char) 169)
dst.append("&copy;");
else if (c == (char) 8482)
dst.append("&trade;");
else if (c == (char) 956)
dst.append("&mu;");
else if (c == (char) 174)
dst.append("&reg;");
else
dst.append(c);
}
}
}
private void writeComment(String indent, XhtmlNode node) throws IOException {
dst.append(indent + "<!-- " + node.getContent().trim() + " -->" + (isPretty() ? "\r\n" : ""));
}
private void writeDocType(XhtmlNode node) throws IOException {
dst.append("<!" + node.getContent() + ">\r\n");
}
private void writeInstruction(XhtmlNode node) throws IOException {
dst.append("<?" + node.getContent() + "?>\r\n");
}
private String escapeHtml(String s) {
if (s == null || s.equals(""))
return null;
StringBuilder b = new StringBuilder();
for (char c : s.toCharArray())
if (c == '<')
b.append("&lt;");
else if (c == '>')
b.append("&gt;");
else if (c == '"')
b.append("&quot;");
else if (c == '&')
b.append("&amp;");
else
b.append(c);
return b.toString();
}
private String attributes(XhtmlNode node) {
StringBuilder s = new StringBuilder();
for (String n : node.getAttributes().keySet())
s.append(" " + n + "=\"" + escapeHtml(node.getAttributes().get(n)) + "\"");
return s.toString();
}
private void writeElement(String indent, XhtmlNode node) throws IOException {
if (!pretty)
indent = "";
if (node.getChildNodes().size() == 0)
dst.append(indent + "<" + node.getName() + attributes(node) + "/>" + (isPretty() ? "\r\n" : ""));
else {
boolean act = node.allChildrenAreText();
if (act || !pretty)
dst.append(indent + "<" + node.getName() + attributes(node)+">");
else
dst.append(indent + "<" + node.getName() + attributes(node) + ">\r\n");
if (node.getName() == "head" && node.getElement("meta") == null)
dst.append(indent + " <meta http-equiv=\"Content-Type\" content=\"text/html; charset=UTF-8\"/>" + (isPretty() ? "\r\n" : ""));
for (XhtmlNode c : node.getChildNodes())
writeNode(indent + " ", c);
if (act)
dst.append("</" + node.getName() + ">" + (isPretty() ? "\r\n" : ""));
else if (node.getChildNodes().get(node.getChildNodes().size() - 1).getNodeType() == NodeType.Text)
dst.append((isPretty() ? "\r\n"+ indent : "") + "</" + node.getName() + ">" + (isPretty() ? "\r\n" : ""));
else
dst.append(indent + "</" + node.getName() + ">" + (isPretty() ? "\r\n" : ""));
}
}
private void writeDocument(String indent, XhtmlNode node) throws IOException {
indent = "";
for (XhtmlNode c : node.getChildNodes())
writeNode(indent, c);
}
public void compose(IXMLWriter xml, XhtmlNode node) throws IOException {
if (node.getNodeType() == NodeType.Comment)
xml.comment(node.getContent(), isPretty());
else if (node.getNodeType() == NodeType.Element)
composeElement(xml, node);
else if (node.getNodeType() == NodeType.Text)
xml.text(node.getContent());
else
throw new Error("Unhandled node type: "+node.getNodeType().toString());
}
private void composeElement(IXMLWriter xml, XhtmlNode node) throws IOException {
for (String n : node.getAttributes().keySet()) {
if (n.equals("xmlns"))
xml.setDefaultNamespace(node.getAttributes().get(n));
else if (n.startsWith("xmlns:"))
xml.namespace(n.substring(6), node.getAttributes().get(n));
else
xml.attribute(n, node.getAttributes().get(n));
}
xml.enter(XHTML_NS, node.getName());
for (XhtmlNode n : node.getChildNodes())
compose(xml, n);
xml.exit(XHTML_NS, node.getName());
}
public String composePlainText(XhtmlNode x) {
StringBuilder b = new StringBuilder();
composePlainText(x, b, false);
return b.toString().trim();
}
private boolean composePlainText(XhtmlNode x, StringBuilder b, boolean lastWS) {
if (x.getNodeType() == NodeType.Text) {
String s = x.getContent();
if (!lastWS & (s.startsWith(" ") || s.startsWith("\r") || s.startsWith("\n") || s.endsWith("\t"))) {
b.append(" ");
lastWS = true;
}
String st = s.trim().replace("\r", " ").replace("\n", " ").replace("\t", " ");
while (st.contains(" "))
st = st.replace(" ", " ");
if (!Utilities.noString(st)) {
b.append(st);
lastWS = false;
if (!lastWS & (s.endsWith(" ") || s.endsWith("\r") || s.endsWith("\n") || s.endsWith("\t"))) {
b.append(" ");
lastWS = true;
}
}
return lastWS;
} else if (x.getNodeType() == NodeType.Element) {
if (x.getName().equals("li")) {
b.append("* ");
lastWS = true;
}
for (XhtmlNode n : x.getChildNodes()) {
lastWS = composePlainText(n, b, lastWS);
}
if (x.getName().equals("p")) {
b.append("\r\n\r\n");
lastWS = true;
}
if (x.getName().equals("br") || x.getName().equals("li")) {
b.append("\r\n");
lastWS = true;
}
return lastWS;
} else
return lastWS;
}
public void compose(Element div, XhtmlNode x) {
for (XhtmlNode child : x.getChildNodes()) {
appendChild(div, child);
}
}
private void appendChild(Element e, XhtmlNode node) {
if (node.getNodeType() == NodeType.Comment)
e.appendChild(e.getOwnerDocument().createComment(node.getContent()));
else if (node.getNodeType() == NodeType.DocType)
throw new Error("not done yet");
else if (node.getNodeType() == NodeType.Instruction)
e.appendChild(e.getOwnerDocument().createProcessingInstruction("", node.getContent()));
else if (node.getNodeType() == NodeType.Text)
e.appendChild(e.getOwnerDocument().createTextNode(node.getContent()));
else if (node.getNodeType() == NodeType.Element) {
Element child = e.getOwnerDocument().createElementNS(XHTML_NS, node.getName());
e.appendChild(child);
for (XhtmlNode c : node.getChildNodes()) {
appendChild(child, c);
}
} else
throw new Error("Unknown node type: "+node.getNodeType().toString());
}
public void compose(OutputStream stream, XhtmlNode x) throws IOException {
byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF };
stream.write(bom);
dst = new OutputStreamWriter(stream, "UTF-8");
dst.append("<html><head><link rel=\"stylesheet\" href=\"fhir.css\"/></head><body>\r\n");
writeNode("", x);
dst.append("</body></html>\r\n");
dst.flush();
}
public void composeDocument(FileOutputStream f, XhtmlNode xhtml) throws IOException {
byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF };
f.write(bom);
dst = new OutputStreamWriter(f, "UTF-8");
writeNode("", xhtml);
dst.flush();
dst.close();
}
public String composeEx(XhtmlNode node) {
try {
return compose(node);
} catch (IOException e) {
throw new Error(e);
}
}
}

2276
hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/CCDAConverter.java
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520
hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/CDAUtilities.java
View File

@ -20,263 +20,263 @@ package org.hl7.fhir.convertors;
* #L%
*/
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
import java.io.InputStream;
import java.util.ArrayList;
import java.util.List;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
import org.hl7.fhir.utilities.xml.XMLUtil;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.Node;
public class CDAUtilities {
private Document doc;
public CDAUtilities(InputStream stream) throws Exception {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
factory.setNamespaceAware(true);
DocumentBuilder builder = factory.newDocumentBuilder();
doc = builder.parse(stream);
basicChecks();
}
private void basicChecks() throws Exception {
Element e = doc.getDocumentElement();
rule(e.getNamespaceURI().equals("urn:hl7-org:v3"), "CDA namespace must be ");
rule(e.getNodeName().equals("ClinicalDocument"), "CDA root name must be ClinicalDocument");
}
private void rule(boolean test, String message) throws Exception {
if (!test)
throw new Exception(message);
}
public Element getElement() {
return doc.getDocumentElement();
}
public void checkTemplateId(Element e, String templateId) throws Exception {
rule(hasTemplateId(e, templateId), "Template Id '"+templateId+"' not found");
}
public Element getChild(Element e, String[] names) throws Exception {
for (String n : names) {
if (e == null)
return null;
e = getChild(e, n);
}
return e;
}
public Element getChild(Element element, String name) throws Exception {
if (element == null)
return null;
Element e = null;
Node n = element.getFirstChild();
while (n != null) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name)) {
if (e == null) {
e = (Element) n;
} else {
throw new Exception("multiple matches found for "+name);
}
}
n = n.getNextSibling();
}
return e;
}
public Element getChildByAttribute(Element element, String name, String attrname, String value) throws Exception {
if (element == null)
return null;
Element e = null;
Node n = element.getFirstChild();
while (n != null) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name) && value.equals(((Element) n).getAttribute(attrname))) {
if (e == null) {
e = (Element) n;
} else {
throw new Exception("multiple matches found for "+name);
}
}
n = n.getNextSibling();
}
return e;
}
public List<Element> getChildren(Element element, String name) {
List<Element> l = new ArrayList<Element>();
if (element != null) {
Node n = element.getFirstChild();
while (n != null) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name)) {
l.add((Element) n);
}
n = n.getNextSibling();
}
}
return l;
}
public Element getDescendent(Element element, String path) throws Exception {
String[] p = path.split("\\/");
return getDescendent(element, p);
}
public Element getDescendent(Element e, String[] path) throws Exception {
for (String n : path) {
if (e == null)
return e;
e = getChild(e, n);
}
return e;
}
public boolean hasTemplateId(Element e, String tid) {
if (e == null)
return false;
boolean found = false;
Node n = e.getFirstChild();
while (n != null && !found) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals("templateId") && tid.equals(((Element) n).getAttribute("root")))
found = true;
n = n.getNextSibling();
}
return found;
}
public String getStatus(Element act) throws Exception {
if (act == null)
return null;
Element sc = getChild(act, "statusCode");
if (sc == null)
return null;
else
return sc.getAttribute("code");
}
public String getSeverity(Element observation) throws Exception {
for (Element e : getChildren(observation, "entryRelationship")) {
Element child = getChild(e, "observation");
if (hasTemplateId(child, "2.16.840.1.113883.10.20.22.4.8"))
return getChild(child, "value").getAttribute("code");
}
return null;
}
public String showTemplateIds(Element element) {
List<Element> list = getChildren(element, "templateId");
CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
for (Element e : list) {
if (e.hasAttribute("extension"))
b.append(e.getAttribute("root")+"::"+e.getAttribute("extension"));
else
b.append(e.getAttribute("root"));
}
return b.toString();
}
public Element getlastChild(Element e) {
Node n = e.getLastChild();
while (n != null && n.getNodeType() != Node.ELEMENT_NODE)
n = n.getPreviousSibling();
return n == null ? null : (Element) n;
}
/**
* This method looks up an object by it's id, and only returns it if has a child by the given name
* (resolving identifier based cross references)
*
* @param id
* @param childName
* @return
* @throws Exception
*/
public Element getById(Element id, String childName) throws Exception {
return getById(doc.getDocumentElement(), id, childName);
}
private Element getById(Element e, Element id, String childName) throws Exception {
Element c = XMLUtil.getFirstChild(e);
while (c != null) {
Element i = getChild(c, "id");
if (i != null && matchesAsId(i, id) && getChild(c, childName) != null)
return c;
Element m = getById(c, id, childName);
if (m != null)
return m;
c = XMLUtil.getNextSibling(c);
}
return null;
}
private boolean matchesAsId(Element i1, Element i2) {
String r1 = i1.getAttribute("root");
String r2 = i2.getAttribute("root");
String e1 = i1.getAttribute("extension");
String e2 = i2.getAttribute("extension");
return (r1 != null && r1.equals(r2)) && ((e1 == null && e2 == null) || (e1 != null && e1.equals(e2)));
}
public Element getByXmlId(String id) {
return getByXmlId(doc.getDocumentElement(), id);
}
private Element getByXmlId(Element e, String value) {
Element c = XMLUtil.getFirstChild(e);
while (c != null) {
String id = c.getAttribute("ID");
if (id != null && id.equals(value))
return c;
Element m = getByXmlId(c, value);
if (m != null)
return m;
c = XMLUtil.getNextSibling(c);
}
return null;
}
}
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
import java.io.InputStream;
import java.util.ArrayList;
import java.util.List;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
import org.hl7.fhir.utilities.xml.XMLUtil;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.Node;
public class CDAUtilities {
private Document doc;
public CDAUtilities(InputStream stream) throws Exception {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
factory.setNamespaceAware(true);
DocumentBuilder builder = factory.newDocumentBuilder();
doc = builder.parse(stream);
basicChecks();
}
private void basicChecks() throws Exception {
Element e = doc.getDocumentElement();
rule(e.getNamespaceURI().equals("urn:hl7-org:v3"), "CDA namespace must be ");
rule(e.getNodeName().equals("ClinicalDocument"), "CDA root name must be ClinicalDocument");
}
private void rule(boolean test, String message) throws Exception {
if (!test)
throw new Exception(message);
}
public Element getElement() {
return doc.getDocumentElement();
}
public void checkTemplateId(Element e, String templateId) throws Exception {
rule(hasTemplateId(e, templateId), "Template Id '"+templateId+"' not found");
}
public Element getChild(Element e, String[] names) throws Exception {
for (String n : names) {
if (e == null)
return null;
e = getChild(e, n);
}
return e;
}
public Element getChild(Element element, String name) throws Exception {
if (element == null)
return null;
Element e = null;
Node n = element.getFirstChild();
while (n != null) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name)) {
if (e == null) {
e = (Element) n;
} else {
throw new Exception("multiple matches found for "+name);
}
}
n = n.getNextSibling();
}
return e;
}
public Element getChildByAttribute(Element element, String name, String attrname, String value) throws Exception {
if (element == null)
return null;
Element e = null;
Node n = element.getFirstChild();
while (n != null) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name) && value.equals(((Element) n).getAttribute(attrname))) {
if (e == null) {
e = (Element) n;
} else {
throw new Exception("multiple matches found for "+name);
}
}
n = n.getNextSibling();
}
return e;
}
public List<Element> getChildren(Element element, String name) {
List<Element> l = new ArrayList<Element>();
if (element != null) {
Node n = element.getFirstChild();
while (n != null) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name)) {
l.add((Element) n);
}
n = n.getNextSibling();
}
}
return l;
}
public Element getDescendent(Element element, String path) throws Exception {
String[] p = path.split("\\/");
return getDescendent(element, p);
}
public Element getDescendent(Element e, String[] path) throws Exception {
for (String n : path) {
if (e == null)
return e;
e = getChild(e, n);
}
return e;
}
public boolean hasTemplateId(Element e, String tid) {
if (e == null)
return false;
boolean found = false;
Node n = e.getFirstChild();
while (n != null && !found) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals("templateId") && tid.equals(((Element) n).getAttribute("root")))
found = true;
n = n.getNextSibling();
}
return found;
}
public String getStatus(Element act) throws Exception {
if (act == null)
return null;
Element sc = getChild(act, "statusCode");
if (sc == null)
return null;
else
return sc.getAttribute("code");
}
public String getSeverity(Element observation) throws Exception {
for (Element e : getChildren(observation, "entryRelationship")) {
Element child = getChild(e, "observation");
if (hasTemplateId(child, "2.16.840.1.113883.10.20.22.4.8"))
return getChild(child, "value").getAttribute("code");
}
return null;
}
public String showTemplateIds(Element element) {
List<Element> list = getChildren(element, "templateId");
CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
for (Element e : list) {
if (e.hasAttribute("extension"))
b.append(e.getAttribute("root")+"::"+e.getAttribute("extension"));
else
b.append(e.getAttribute("root"));
}
return b.toString();
}
public Element getlastChild(Element e) {
Node n = e.getLastChild();
while (n != null && n.getNodeType() != Node.ELEMENT_NODE)
n = n.getPreviousSibling();
return n == null ? null : (Element) n;
}
/**
* This method looks up an object by it's id, and only returns it if has a child by the given name
* (resolving identifier based cross references)
*
* @param id
* @param childName
* @return
* @throws Exception
*/
public Element getById(Element id, String childName) throws Exception {
return getById(doc.getDocumentElement(), id, childName);
}
private Element getById(Element e, Element id, String childName) throws Exception {
Element c = XMLUtil.getFirstChild(e);
while (c != null) {
Element i = getChild(c, "id");
if (i != null && matchesAsId(i, id) && getChild(c, childName) != null)
return c;
Element m = getById(c, id, childName);
if (m != null)
return m;
c = XMLUtil.getNextSibling(c);
}
return null;
}
private boolean matchesAsId(Element i1, Element i2) {
String r1 = i1.getAttribute("root");
String r2 = i2.getAttribute("root");
String e1 = i1.getAttribute("extension");
String e2 = i2.getAttribute("extension");
return (r1 != null && r1.equals(r2)) && ((e1 == null && e2 == null) || (e1 != null && e1.equals(e2)));
}
public Element getByXmlId(String id) {
return getByXmlId(doc.getDocumentElement(), id);
}
private Element getByXmlId(Element e, String value) {
Element c = XMLUtil.getFirstChild(e);
while (c != null) {
String id = c.getAttribute("ID");
if (id != null && id.equals(value))
return c;
Element m = getByXmlId(c, value);
if (m != null)
return m;
c = XMLUtil.getNextSibling(c);
}
return null;
}
}

24
hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/CcdaExtensions.java
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@ -20,15 +20,15 @@ package org.hl7.fhir.convertors;
* #L%
*/
public class CcdaExtensions {
public final static String DAF_NAME_RACE = "http://hl7.org/fhir/StructureDefinition/us-core-race";
public final static String DAF_NAME_ETHNICITY = "http://hl7.org/fhir/StructureDefinition/us-core-ethnicity";
public final static String BASE = "http://hl7.org/ccda";
public final static String NAME_RELIGION = BASE+"/religious-affiliation";
public final static String NAME_BIRTHPLACE = BASE+"birthplace";
public final static String NAME_LANG_PROF = BASE+"proficiency-level";
}
public class CcdaExtensions {
public final static String DAF_NAME_RACE = "http://hl7.org/fhir/StructureDefinition/us-core-race";
public final static String DAF_NAME_ETHNICITY = "http://hl7.org/fhir/StructureDefinition/us-core-ethnicity";
public final static String BASE = "http://hl7.org/ccda";
public final static String NAME_RELIGION = BASE+"/religious-affiliation";
public final static String NAME_BIRTHPLACE = BASE+"birthplace";
public final static String NAME_LANG_PROF = BASE+"proficiency-level";
}

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hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/Convert.java
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hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/ConverterBase.java
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@ -20,7 +20,7 @@ package org.hl7.fhir.convertors;
* #L%
*/
public class ConverterBase {
}
public class ConverterBase {
}

32
hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/VersionConvertorAdvisor.java
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@ -20,19 +20,19 @@ package org.hl7.fhir.convertors;
* #L%
*/
import org.hl7.fhir.dstu3.model.CodeSystem;
import org.hl7.fhir.dstu3.model.ValueSet;
import org.hl7.fhir.exceptions.FHIRException;
public interface VersionConvertorAdvisor {
boolean ignoreEntry(org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent src);
// called ?
org.hl7.fhir.instance.model.Resource convert(org.hl7.fhir.dstu3.model.Resource resource) throws FHIRException;
// called when an r2 value set has a codeSystem in it
void handleCodeSystem(CodeSystem tgtcs, ValueSet source);
CodeSystem getCodeSystem(ValueSet src);
}
import org.hl7.fhir.dstu3.model.CodeSystem;
import org.hl7.fhir.dstu3.model.ValueSet;
import org.hl7.fhir.exceptions.FHIRException;
public interface VersionConvertorAdvisor {
boolean ignoreEntry(org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent src);
// called ?
org.hl7.fhir.instance.model.Resource convert(org.hl7.fhir.dstu3.model.Resource resource) throws FHIRException;
// called when an r2 value set has a codeSystem in it
void handleCodeSystem(CodeSystem tgtcs, ValueSet source);
CodeSystem getCodeSystem(ValueSet src);
}

26180
hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/VersionConvertor_10_20.java
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hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/VersionConvertor_14_20.java
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930
hapi-fhir-converter/src/main/java/org/hl7/fhir/dstu2/utils/ToolingExtensions.java
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@ -20,468 +20,468 @@ package org.hl7.fhir.dstu2.utils;
* #L%
*/
import java.net.URISyntaxException;
/*
Copyright (c) 2011+, HL7, Inc
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;
import org.hl7.fhir.instance.model.BooleanType;
import org.hl7.fhir.instance.model.CodeType;
import org.hl7.fhir.instance.model.CodeableConcept;
import org.hl7.fhir.instance.model.Coding;
import org.hl7.fhir.instance.model.DataElement;
import org.hl7.fhir.instance.model.DomainResource;
import org.hl7.fhir.instance.model.Element;
import org.hl7.fhir.instance.model.ElementDefinition;
import org.hl7.fhir.instance.model.Extension;
import org.hl7.fhir.instance.model.ExtensionHelper;
import org.hl7.fhir.instance.model.Factory;
import org.hl7.fhir.instance.model.Identifier;
import org.hl7.fhir.instance.model.IntegerType;
import org.hl7.fhir.instance.model.MarkdownType;
import org.hl7.fhir.instance.model.PrimitiveType;
import org.hl7.fhir.instance.model.Questionnaire.GroupComponent;
import org.hl7.fhir.instance.model.Questionnaire.QuestionComponent;
import org.hl7.fhir.instance.model.Reference;
import org.hl7.fhir.instance.model.StringType;
import org.hl7.fhir.instance.model.Type;
import org.hl7.fhir.instance.model.UriType;
import org.hl7.fhir.instance.model.ValueSet;
import org.hl7.fhir.instance.model.ValueSet.ConceptDefinitionComponent;
import org.hl7.fhir.instance.model.ValueSet.ValueSetCodeSystemComponent;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
import org.hl7.fhir.exceptions.FHIRFormatError;
import org.hl7.fhir.utilities.Utilities;
public class ToolingExtensions {
// validated
public static final String EXT_SUBSUMES = "http://hl7.org/fhir/StructureDefinition/valueset-subsumes";
private static final String EXT_OID = "http://hl7.org/fhir/StructureDefinition/valueset-oid";
public static final String EXT_DEPRECATED = "http://hl7.org/fhir/StructureDefinition/valueset-deprecated";
public static final String EXT_DEFINITION = "http://hl7.org/fhir/StructureDefinition/valueset-definition";
public static final String EXT_COMMENT = "http://hl7.org/fhir/StructureDefinition/valueset-comments";
private static final String EXT_IDENTIFIER = "http://hl7.org/fhir/StructureDefinition/identifier";
private static final String EXT_TRANSLATION = "http://hl7.org/fhir/StructureDefinition/translation";
public static final String EXT_ISSUE_SOURCE = "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source";
public static final String EXT_DISPLAY_HINT = "http://hl7.org/fhir/StructureDefinition/structuredefinition-display-hint";
public static final String EXT_REPLACED_BY = "http://hl7.org/fhir/StructureDefinition/valueset-replacedby";
public static final String EXT_JSON_TYPE = "http://hl7.org/fhir/StructureDefinition/structuredefinition-json-type";
public static final String EXT_XML_TYPE = "http://hl7.org/fhir/StructureDefinition/structuredefinition-xml-type";
public static final String EXT_REGEX = "http://hl7.org/fhir/StructureDefinition/structuredefinition-regex";
public static final String EXT_EXPRESSION = "http://hl7.org/fhir/StructureDefinition/structuredefinition-expression";
public static final String EXT_SEARCH_EXPRESSION = "http://hl7.org/fhir/StructureDefinition/searchparameter-expression";
// unregistered?
public static final String EXT_FLYOVER = "http://hl7.org/fhir/Profile/questionnaire-extensions#flyover";
private static final String EXT_QTYPE = "http://www.healthintersections.com.au/fhir/Profile/metadata#type";
private static final String EXT_QREF = "http://www.healthintersections.com.au/fhir/Profile/metadata#reference";
private static final String EXTENSION_FILTER_ONLY = "http://www.healthintersections.com.au/fhir/Profile/metadata#expandNeedsFilter";
private static final String EXT_TYPE = "http://www.healthintersections.com.au/fhir/Profile/metadata#type";
private static final String EXT_REFERENCE = "http://www.healthintersections.com.au/fhir/Profile/metadata#reference";
private static final String EXT_ALLOWABLE_UNITS = "http://hl7.org/fhir/StructureDefinition/elementdefinition-allowedUnits";
public static final String EXT_CIMI_REFERENCE = "http://hl7.org/fhir/StructureDefinition/cimi-reference";
public static final String EXT_UNCLOSED = "http://hl7.org/fhir/StructureDefinition/valueset-unclosed";
public static final String EXT_FMM_LEVEL = "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm";
// specific extension helpers
public static Extension makeIssueSource(Source source) {
Extension ex = new Extension();
// todo: write this up and get it published with the pack (and handle the redirect?)
ex.setUrl(ToolingExtensions.EXT_ISSUE_SOURCE);
CodeType c = new CodeType();
c.setValue(source.toString());
ex.setValue(c);
return ex;
}
public static boolean hasExtension(DomainResource de, String url) {
return getExtension(de, url) != null;
}
public static boolean hasExtension(Element e, String url) {
return getExtension(e, url) != null;
}
public static void addStringExtension(DomainResource dr, String url, String content) {
if (!Utilities.noString(content)) {
Extension ex = getExtension(dr, url);
if (ex != null)
ex.setValue(new StringType(content));
else
dr.getExtension().add(Factory.newExtension(url, new StringType(content), true));
}
}
public static void addStringExtension(Element e, String url, String content) {
if (!Utilities.noString(content)) {
Extension ex = getExtension(e, url);
if (ex != null)
ex.setValue(new StringType(content));
else
e.getExtension().add(Factory.newExtension(url, new StringType(content), true));
}
}
public static void addIntegerExtension(DomainResource dr, String url, int value) {
Extension ex = getExtension(dr, url);
if (ex != null)
ex.setValue(new IntegerType(value));
else
dr.getExtension().add(Factory.newExtension(url, new IntegerType(value), true));
}
public static void addComment(Element nc, String comment) {
if (!Utilities.noString(comment))
nc.getExtension().add(Factory.newExtension(EXT_COMMENT, Factory.newString_(comment), true));
}
public static void markDeprecated(Element nc) {
setDeprecated(nc);
}
public static void addSubsumes(ConceptDefinitionComponent nc, String code) {
nc.getModifierExtension().add(Factory.newExtension(EXT_SUBSUMES, Factory.newCode(code), true));
}
public static void addDefinition(Element nc, String definition) {
if (!Utilities.noString(definition))
nc.getExtension().add(Factory.newExtension(EXT_DEFINITION, Factory.newString_(definition), true));
}
public static void addDisplayHint(Element def, String hint) {
if (!Utilities.noString(hint))
def.getExtension().add(Factory.newExtension(EXT_DISPLAY_HINT, Factory.newString_(hint), true));
}
public static String getDisplayHint(Element def) {
return readStringExtension(def, EXT_DISPLAY_HINT);
}
public static String readStringExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null)
return null;
if (ex.getValue() instanceof UriType)
return ((UriType) ex.getValue()).getValue();
if (!(ex.getValue() instanceof StringType))
return null;
return ((StringType) ex.getValue()).getValue();
}
public static String readStringExtension(DomainResource c, String uri) {
Extension ex = getExtension(c, uri);
if (ex == null)
return null;
if ((ex.getValue() instanceof StringType))
return ((StringType) ex.getValue()).getValue();
if ((ex.getValue() instanceof UriType))
return ((UriType) ex.getValue()).getValue();
if ((ex.getValue() instanceof MarkdownType))
return ((MarkdownType) ex.getValue()).getValue();
return null;
}
@SuppressWarnings("unchecked")
public static PrimitiveType<Type> readPrimitiveExtension(DomainResource c, String uri) {
Extension ex = getExtension(c, uri);
if (ex == null)
return null;
return (PrimitiveType<Type>) ex.getValue();
}
public static boolean findStringExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null)
return false;
if (!(ex.getValue() instanceof StringType))
return false;
return !Utilities.noString(((StringType) ex.getValue()).getValue());
}
public static Boolean readBooleanExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null)
return null;
if (!(ex.getValue() instanceof BooleanType))
return null;
return ((BooleanType) ex.getValue()).getValue();
}
public static boolean findBooleanExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null)
return false;
if (!(ex.getValue() instanceof BooleanType))
return false;
return true;
}
public static String getComment(ConceptDefinitionComponent c) {
return readStringExtension(c, EXT_COMMENT);
}
public static Boolean getDeprecated(Element c) {
return readBooleanExtension(c, EXT_DEPRECATED);
}
public static boolean hasComment(ConceptDefinitionComponent c) {
return findStringExtension(c, EXT_COMMENT);
}
public static boolean hasDeprecated(Element c) {
return findBooleanExtension(c, EXT_DEPRECATED);
}
public static List<CodeType> getSubsumes(ConceptDefinitionComponent c) {
List<CodeType> res = new ArrayList<CodeType>();
for (Extension e : c.getExtension()) {
if (EXT_SUBSUMES.equals(e.getUrl()))
res.add((CodeType) e.getValue());
}
return res;
}
public static void addFlyOver(GroupComponent group, String text) {
if (!Utilities.noString(text))
group.getExtension().add(Factory.newExtension(EXT_FLYOVER, Factory.newString_(text), true));
}
public static void setQuestionType(GroupComponent group, String text) {
if (!Utilities.noString(text))
group.getExtension().add(Factory.newExtension(EXT_QTYPE, Factory.newString_(text), true));
}
public static void setQuestionReference(GroupComponent group, String text) {
if (!Utilities.noString(text))
group.getExtension().add(Factory.newExtension(EXT_QREF, Factory.newString_(text), true));
}
public static void addFlyOver(Element element, String text) {
element.getExtension().add(Factory.newExtension(EXT_FLYOVER, Factory.newString_(text), true));
}
public static void addFilterOnly(Reference element, boolean value) {
element.getExtension().add(Factory.newExtension(EXTENSION_FILTER_ONLY, Factory.newBoolean(value), true));
}
public static void addType(GroupComponent group, String value) {
group.getExtension().add(Factory.newExtension(EXT_TYPE, Factory.newString_(value), true));
}
public static void addReference(QuestionComponent group, String value) {
group.getExtension().add(Factory.newExtension(EXT_REFERENCE, Factory.newString_(value), true));
}
public static void addIdentifier(Element element, Identifier value) {
element.getExtension().add(Factory.newExtension(EXT_IDENTIFIER, value, true));
}
/**
* @param name the identity of the extension of interest
* @return The extension, if on this element, else null
*/
public static Extension getExtension(DomainResource resource, String name) {
if (name == null)
return null;
if (!resource.hasExtension())
return null;
for (Extension e : resource.getExtension()) {
if (name.equals(e.getUrl()))
return e;
}
return null;
}
public static Extension getExtension(Element el, String name) {
if (name == null)
return null;
if (!el.hasExtension())
return null;
for (Extension e : el.getExtension()) {
if (name.equals(e.getUrl()))
return e;
}
return null;
}
public static void setStringExtension(DomainResource resource, String uri, String value) {
Extension ext = getExtension(resource, uri);
if (ext != null)
ext.setValue(new StringType(value));
else
resource.getExtension().add(new Extension(new UriType(uri)).setValue(new StringType(value)));
}
public static String getOID(ValueSetCodeSystemComponent define) {
return readStringExtension(define, EXT_OID);
}
public static String getOID(ValueSet vs) {
return readStringExtension(vs, EXT_OID);
}
public static void setOID(ValueSetCodeSystemComponent define, String oid) throws FHIRFormatError, URISyntaxException {
if (!oid.startsWith("urn:oid:"))
throw new FHIRFormatError("Error in OID format");
if (oid.startsWith("urn:oid:urn:oid:"))
throw new FHIRFormatError("Error in OID format");
define.getExtension().add(Factory.newExtension(EXT_OID, Factory.newUri(oid), false));
}
public static void setOID(ValueSet vs, String oid) throws FHIRFormatError, URISyntaxException {
if (!oid.startsWith("urn:oid:"))
throw new FHIRFormatError("Error in OID format");
if (oid.startsWith("urn:oid:urn:oid:"))
throw new FHIRFormatError("Error in OID format");
vs.getExtension().add(Factory.newExtension(EXT_OID, Factory.newUri(oid), false));
}
public static boolean hasLanguageTranslation(Element element, String lang) {
for (Extension e : element.getExtension()) {
if (e.getUrl().equals(EXT_TRANSLATION)) {
Extension e1 = ExtensionHelper.getExtension(e, "lang");
if (e1 != null && e1.getValue() instanceof CodeType && ((CodeType) e.getValue()).getValue().equals(lang))
return true;
}
}
return false;
}
public static String getLanguageTranslation(Element element, String lang) {
for (Extension e : element.getExtension()) {
if (e.getUrl().equals(EXT_TRANSLATION)) {
Extension e1 = ExtensionHelper.getExtension(e, "lang");
if (e1 != null && e1.getValue() instanceof CodeType && ((CodeType) e.getValue()).getValue().equals(lang)) {
e1 = ExtensionHelper.getExtension(e, "content");
return ((StringType) e.getValue()).getValue();
}
}
}
return null;
}
public static void addLanguageTranslation(Element element, String lang, String value) {
Extension extension = new Extension().setUrl(EXT_TRANSLATION);
extension.addExtension().setUrl("lang").setValue(new StringType(lang));
extension.addExtension().setUrl("content").setValue(new StringType(value));
element.getExtension().add(extension);
}
public static Type getAllowedUnits(ElementDefinition eld) {
for (Extension e : eld.getExtension())
if (e.getUrl().equals(EXT_ALLOWABLE_UNITS))
return e.getValue();
return null;
}
public static void setAllowableUnits(ElementDefinition eld, CodeableConcept cc) {
for (Extension e : eld.getExtension())
if (e.getUrl().equals(EXT_ALLOWABLE_UNITS)) {
e.setValue(cc);
return;
}
eld.getExtension().add(new Extension().setUrl(EXT_ALLOWABLE_UNITS).setValue(cc));
}
public static List<Extension> getExtensions(Element element, String url) {
List<Extension> results = new ArrayList<Extension>();
for (Extension ex : element.getExtension())
if (ex.getUrl().equals(url))
results.add(ex);
return results;
}
public static List<Extension> getExtensions(DomainResource resource, String url) {
List<Extension> results = new ArrayList<Extension>();
for (Extension ex : resource.getExtension())
if (ex.getUrl().equals(url))
results.add(ex);
return results;
}
public static void addDEReference(DataElement de, String value) {
for (Extension e : de.getExtension())
if (e.getUrl().equals(EXT_CIMI_REFERENCE)) {
e.setValue(new UriType(value));
return;
}
de.getExtension().add(new Extension().setUrl(EXT_CIMI_REFERENCE).setValue(new UriType(value)));
}
public static void setDeprecated(Element nc) {
for (Extension e : nc.getExtension())
if (e.getUrl().equals(EXT_DEPRECATED)) {
e.setValue(new BooleanType(true));
return;
}
nc.getExtension().add(new Extension().setUrl(EXT_DEPRECATED).setValue(new BooleanType(true)));
}
public static void setExtension(Element focus, String url, Coding c) {
for (Extension e : focus.getExtension())
if (e.getUrl().equals(url)) {
e.setValue(c);
return;
}
focus.getExtension().add(new Extension().setUrl(url).setValue(c));
}
public static void removeExtension(DomainResource focus, String url) {
Iterator<Extension> i = focus.getExtension().iterator();
while (i.hasNext()) {
Extension e = i.next(); // must be called before you can call i.remove()
if (e.getUrl().equals(url)) {
i.remove();
}
}
}
public static void removeExtension(Element focus, String url) {
Iterator<Extension> i = focus.getExtension().iterator();
while (i.hasNext()) {
Extension e = i.next(); // must be called before you can call i.remove()
if (e.getUrl().equals(url)) {
i.remove();
}
}
}
}
import java.net.URISyntaxException;
/*
Copyright (c) 2011+, HL7, Inc
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;
import org.hl7.fhir.instance.model.BooleanType;
import org.hl7.fhir.instance.model.CodeType;
import org.hl7.fhir.instance.model.CodeableConcept;
import org.hl7.fhir.instance.model.Coding;
import org.hl7.fhir.instance.model.DataElement;
import org.hl7.fhir.instance.model.DomainResource;
import org.hl7.fhir.instance.model.Element;
import org.hl7.fhir.instance.model.ElementDefinition;
import org.hl7.fhir.instance.model.Extension;
import org.hl7.fhir.instance.model.ExtensionHelper;
import org.hl7.fhir.instance.model.Factory;
import org.hl7.fhir.instance.model.Identifier;
import org.hl7.fhir.instance.model.IntegerType;
import org.hl7.fhir.instance.model.MarkdownType;
import org.hl7.fhir.instance.model.PrimitiveType;
import org.hl7.fhir.instance.model.Questionnaire.GroupComponent;
import org.hl7.fhir.instance.model.Questionnaire.QuestionComponent;
import org.hl7.fhir.instance.model.Reference;
import org.hl7.fhir.instance.model.StringType;
import org.hl7.fhir.instance.model.Type;
import org.hl7.fhir.instance.model.UriType;
import org.hl7.fhir.instance.model.ValueSet;
import org.hl7.fhir.instance.model.ValueSet.ConceptDefinitionComponent;
import org.hl7.fhir.instance.model.ValueSet.ValueSetCodeSystemComponent;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
import org.hl7.fhir.exceptions.FHIRFormatError;
import org.hl7.fhir.utilities.Utilities;
public class ToolingExtensions {
// validated
public static final String EXT_SUBSUMES = "http://hl7.org/fhir/StructureDefinition/valueset-subsumes";
private static final String EXT_OID = "http://hl7.org/fhir/StructureDefinition/valueset-oid";
public static final String EXT_DEPRECATED = "http://hl7.org/fhir/StructureDefinition/valueset-deprecated";
public static final String EXT_DEFINITION = "http://hl7.org/fhir/StructureDefinition/valueset-definition";
public static final String EXT_COMMENT = "http://hl7.org/fhir/StructureDefinition/valueset-comments";
private static final String EXT_IDENTIFIER = "http://hl7.org/fhir/StructureDefinition/identifier";
private static final String EXT_TRANSLATION = "http://hl7.org/fhir/StructureDefinition/translation";
public static final String EXT_ISSUE_SOURCE = "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source";
public static final String EXT_DISPLAY_HINT = "http://hl7.org/fhir/StructureDefinition/structuredefinition-display-hint";
public static final String EXT_REPLACED_BY = "http://hl7.org/fhir/StructureDefinition/valueset-replacedby";
public static final String EXT_JSON_TYPE = "http://hl7.org/fhir/StructureDefinition/structuredefinition-json-type";
public static final String EXT_XML_TYPE = "http://hl7.org/fhir/StructureDefinition/structuredefinition-xml-type";
public static final String EXT_REGEX = "http://hl7.org/fhir/StructureDefinition/structuredefinition-regex";
public static final String EXT_EXPRESSION = "http://hl7.org/fhir/StructureDefinition/structuredefinition-expression";
public static final String EXT_SEARCH_EXPRESSION = "http://hl7.org/fhir/StructureDefinition/searchparameter-expression";
// unregistered?
public static final String EXT_FLYOVER = "http://hl7.org/fhir/Profile/questionnaire-extensions#flyover";
private static final String EXT_QTYPE = "http://www.healthintersections.com.au/fhir/Profile/metadata#type";
private static final String EXT_QREF = "http://www.healthintersections.com.au/fhir/Profile/metadata#reference";
private static final String EXTENSION_FILTER_ONLY = "http://www.healthintersections.com.au/fhir/Profile/metadata#expandNeedsFilter";
private static final String EXT_TYPE = "http://www.healthintersections.com.au/fhir/Profile/metadata#type";
private static final String EXT_REFERENCE = "http://www.healthintersections.com.au/fhir/Profile/metadata#reference";
private static final String EXT_ALLOWABLE_UNITS = "http://hl7.org/fhir/StructureDefinition/elementdefinition-allowedUnits";
public static final String EXT_CIMI_REFERENCE = "http://hl7.org/fhir/StructureDefinition/cimi-reference";
public static final String EXT_UNCLOSED = "http://hl7.org/fhir/StructureDefinition/valueset-unclosed";
public static final String EXT_FMM_LEVEL = "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm";
// specific extension helpers
public static Extension makeIssueSource(Source source) {
Extension ex = new Extension();
// todo: write this up and get it published with the pack (and handle the redirect?)
ex.setUrl(ToolingExtensions.EXT_ISSUE_SOURCE);
CodeType c = new CodeType();
c.setValue(source.toString());
ex.setValue(c);
return ex;
}
public static boolean hasExtension(DomainResource de, String url) {
return getExtension(de, url) != null;
}
public static boolean hasExtension(Element e, String url) {
return getExtension(e, url) != null;
}
public static void addStringExtension(DomainResource dr, String url, String content) {
if (!Utilities.noString(content)) {
Extension ex = getExtension(dr, url);
if (ex != null)
ex.setValue(new StringType(content));
else
dr.getExtension().add(Factory.newExtension(url, new StringType(content), true));
}
}
public static void addStringExtension(Element e, String url, String content) {
if (!Utilities.noString(content)) {
Extension ex = getExtension(e, url);
if (ex != null)
ex.setValue(new StringType(content));
else
e.getExtension().add(Factory.newExtension(url, new StringType(content), true));
}
}
public static void addIntegerExtension(DomainResource dr, String url, int value) {
Extension ex = getExtension(dr, url);
if (ex != null)
ex.setValue(new IntegerType(value));
else
dr.getExtension().add(Factory.newExtension(url, new IntegerType(value), true));
}
public static void addComment(Element nc, String comment) {
if (!Utilities.noString(comment))
nc.getExtension().add(Factory.newExtension(EXT_COMMENT, Factory.newString_(comment), true));
}
public static void markDeprecated(Element nc) {
setDeprecated(nc);
}
public static void addSubsumes(ConceptDefinitionComponent nc, String code) {
nc.getModifierExtension().add(Factory.newExtension(EXT_SUBSUMES, Factory.newCode(code), true));
}
public static void addDefinition(Element nc, String definition) {
if (!Utilities.noString(definition))
nc.getExtension().add(Factory.newExtension(EXT_DEFINITION, Factory.newString_(definition), true));
}
public static void addDisplayHint(Element def, String hint) {
if (!Utilities.noString(hint))
def.getExtension().add(Factory.newExtension(EXT_DISPLAY_HINT, Factory.newString_(hint), true));
}
public static String getDisplayHint(Element def) {
return readStringExtension(def, EXT_DISPLAY_HINT);
}
public static String readStringExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null)
return null;
if (ex.getValue() instanceof UriType)
return ((UriType) ex.getValue()).getValue();
if (!(ex.getValue() instanceof StringType))
return null;
return ((StringType) ex.getValue()).getValue();
}
public static String readStringExtension(DomainResource c, String uri) {
Extension ex = getExtension(c, uri);
if (ex == null)
return null;
if ((ex.getValue() instanceof StringType))
return ((StringType) ex.getValue()).getValue();
if ((ex.getValue() instanceof UriType))
return ((UriType) ex.getValue()).getValue();
if ((ex.getValue() instanceof MarkdownType))
return ((MarkdownType) ex.getValue()).getValue();
return null;
}
@SuppressWarnings("unchecked")
public static PrimitiveType<Type> readPrimitiveExtension(DomainResource c, String uri) {
Extension ex = getExtension(c, uri);
if (ex == null)
return null;
return (PrimitiveType<Type>) ex.getValue();
}
public static boolean findStringExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null)
return false;
if (!(ex.getValue() instanceof StringType))
return false;
return !Utilities.noString(((StringType) ex.getValue()).getValue());
}
public static Boolean readBooleanExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null)
return null;
if (!(ex.getValue() instanceof BooleanType))
return null;
return ((BooleanType) ex.getValue()).getValue();
}
public static boolean findBooleanExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null)
return false;
if (!(ex.getValue() instanceof BooleanType))
return false;
return true;
}
public static String getComment(ConceptDefinitionComponent c) {
return readStringExtension(c, EXT_COMMENT);
}
public static Boolean getDeprecated(Element c) {
return readBooleanExtension(c, EXT_DEPRECATED);
}
public static boolean hasComment(ConceptDefinitionComponent c) {
return findStringExtension(c, EXT_COMMENT);
}
public static boolean hasDeprecated(Element c) {
return findBooleanExtension(c, EXT_DEPRECATED);
}
public static List<CodeType> getSubsumes(ConceptDefinitionComponent c) {
List<CodeType> res = new ArrayList<CodeType>();
for (Extension e : c.getExtension()) {
if (EXT_SUBSUMES.equals(e.getUrl()))
res.add((CodeType) e.getValue());
}
return res;
}
public static void addFlyOver(GroupComponent group, String text) {
if (!Utilities.noString(text))
group.getExtension().add(Factory.newExtension(EXT_FLYOVER, Factory.newString_(text), true));
}
public static void setQuestionType(GroupComponent group, String text) {
if (!Utilities.noString(text))
group.getExtension().add(Factory.newExtension(EXT_QTYPE, Factory.newString_(text), true));
}
public static void setQuestionReference(GroupComponent group, String text) {
if (!Utilities.noString(text))
group.getExtension().add(Factory.newExtension(EXT_QREF, Factory.newString_(text), true));
}
public static void addFlyOver(Element element, String text) {
element.getExtension().add(Factory.newExtension(EXT_FLYOVER, Factory.newString_(text), true));
}
public static void addFilterOnly(Reference element, boolean value) {
element.getExtension().add(Factory.newExtension(EXTENSION_FILTER_ONLY, Factory.newBoolean(value), true));
}
public static void addType(GroupComponent group, String value) {
group.getExtension().add(Factory.newExtension(EXT_TYPE, Factory.newString_(value), true));
}
public static void addReference(QuestionComponent group, String value) {
group.getExtension().add(Factory.newExtension(EXT_REFERENCE, Factory.newString_(value), true));
}
public static void addIdentifier(Element element, Identifier value) {
element.getExtension().add(Factory.newExtension(EXT_IDENTIFIER, value, true));
}
/**
* @param name the identity of the extension of interest
* @return The extension, if on this element, else null
*/
public static Extension getExtension(DomainResource resource, String name) {
if (name == null)
return null;
if (!resource.hasExtension())
return null;
for (Extension e : resource.getExtension()) {
if (name.equals(e.getUrl()))
return e;
}
return null;
}
public static Extension getExtension(Element el, String name) {
if (name == null)
return null;
if (!el.hasExtension())
return null;
for (Extension e : el.getExtension()) {
if (name.equals(e.getUrl()))
return e;
}
return null;
}
public static void setStringExtension(DomainResource resource, String uri, String value) {
Extension ext = getExtension(resource, uri);
if (ext != null)
ext.setValue(new StringType(value));
else
resource.getExtension().add(new Extension(new UriType(uri)).setValue(new StringType(value)));
}
public static String getOID(ValueSetCodeSystemComponent define) {
return readStringExtension(define, EXT_OID);
}
public static String getOID(ValueSet vs) {
return readStringExtension(vs, EXT_OID);
}
public static void setOID(ValueSetCodeSystemComponent define, String oid) throws FHIRFormatError, URISyntaxException {
if (!oid.startsWith("urn:oid:"))
throw new FHIRFormatError("Error in OID format");
if (oid.startsWith("urn:oid:urn:oid:"))
throw new FHIRFormatError("Error in OID format");
define.getExtension().add(Factory.newExtension(EXT_OID, Factory.newUri(oid), false));
}
public static void setOID(ValueSet vs, String oid) throws FHIRFormatError, URISyntaxException {
if (!oid.startsWith("urn:oid:"))
throw new FHIRFormatError("Error in OID format");
if (oid.startsWith("urn:oid:urn:oid:"))
throw new FHIRFormatError("Error in OID format");
vs.getExtension().add(Factory.newExtension(EXT_OID, Factory.newUri(oid), false));
}
public static boolean hasLanguageTranslation(Element element, String lang) {
for (Extension e : element.getExtension()) {
if (e.getUrl().equals(EXT_TRANSLATION)) {
Extension e1 = ExtensionHelper.getExtension(e, "lang");
if (e1 != null && e1.getValue() instanceof CodeType && ((CodeType) e.getValue()).getValue().equals(lang))
return true;
}
}
return false;
}
public static String getLanguageTranslation(Element element, String lang) {
for (Extension e : element.getExtension()) {
if (e.getUrl().equals(EXT_TRANSLATION)) {
Extension e1 = ExtensionHelper.getExtension(e, "lang");
if (e1 != null && e1.getValue() instanceof CodeType && ((CodeType) e.getValue()).getValue().equals(lang)) {
e1 = ExtensionHelper.getExtension(e, "content");
return ((StringType) e.getValue()).getValue();
}
}
}
return null;
}
public static void addLanguageTranslation(Element element, String lang, String value) {
Extension extension = new Extension().setUrl(EXT_TRANSLATION);
extension.addExtension().setUrl("lang").setValue(new StringType(lang));
extension.addExtension().setUrl("content").setValue(new StringType(value));
element.getExtension().add(extension);
}
public static Type getAllowedUnits(ElementDefinition eld) {
for (Extension e : eld.getExtension())
if (e.getUrl().equals(EXT_ALLOWABLE_UNITS))
return e.getValue();
return null;
}
public static void setAllowableUnits(ElementDefinition eld, CodeableConcept cc) {
for (Extension e : eld.getExtension())
if (e.getUrl().equals(EXT_ALLOWABLE_UNITS)) {
e.setValue(cc);
return;
}
eld.getExtension().add(new Extension().setUrl(EXT_ALLOWABLE_UNITS).setValue(cc));
}
public static List<Extension> getExtensions(Element element, String url) {
List<Extension> results = new ArrayList<Extension>();
for (Extension ex : element.getExtension())
if (ex.getUrl().equals(url))
results.add(ex);
return results;
}
public static List<Extension> getExtensions(DomainResource resource, String url) {
List<Extension> results = new ArrayList<Extension>();
for (Extension ex : resource.getExtension())
if (ex.getUrl().equals(url))
results.add(ex);
return results;
}
public static void addDEReference(DataElement de, String value) {
for (Extension e : de.getExtension())
if (e.getUrl().equals(EXT_CIMI_REFERENCE)) {
e.setValue(new UriType(value));
return;
}
de.getExtension().add(new Extension().setUrl(EXT_CIMI_REFERENCE).setValue(new UriType(value)));
}
public static void setDeprecated(Element nc) {
for (Extension e : nc.getExtension())
if (e.getUrl().equals(EXT_DEPRECATED)) {
e.setValue(new BooleanType(true));
return;
}
nc.getExtension().add(new Extension().setUrl(EXT_DEPRECATED).setValue(new BooleanType(true)));
}
public static void setExtension(Element focus, String url, Coding c) {
for (Extension e : focus.getExtension())
if (e.getUrl().equals(url)) {
e.setValue(c);
return;
}
focus.getExtension().add(new Extension().setUrl(url).setValue(c));
}
public static void removeExtension(DomainResource focus, String url) {
Iterator<Extension> i = focus.getExtension().iterator();
while (i.hasNext()) {
Extension e = i.next(); // must be called before you can call i.remove()
if (e.getUrl().equals(url)) {
i.remove();
}
}
}
public static void removeExtension(Element focus, String url) {
Iterator<Extension> i = focus.getExtension().iterator();
while (i.hasNext()) {
Extension e = i.next(); // must be called before you can call i.remove()
if (e.getUrl().equals(url)) {
i.remove();
}
}
}
}

122
hapi-fhir-converter/src/main/java/org/hl7/fhir/utilities/OIDUtils.java
View File

@ -20,64 +20,64 @@ package org.hl7.fhir.utilities;
* #L%
*/
public class OIDUtils {
/*
2.16.840.1.113883.3.72.5.2 - NIST owns this
2.16.840.1.113883.4.6 - National Provider Identifier
2.16.840.1.113883.6.21 - UB92
2.16.840.1.113883.6.69 - NDC
*/
public static String getUriForOid(String r) {
if (r.equals("2.16.840.1.113883.6.96"))
return "http://snomed.info/sct";
if (r.equals("2.16.840.1.113883.6.1"))
return "http://loinc.org";
if (r.equals("2.16.840.1.113883.6.8"))
return "http://unitsofmeasure.org";
if (r.equals("2.16.840.1.113883.6.3"))
return "http://hl7.org/fhir/sid/icd-10";
if (r.equals("2.16.840.1.113883.6.42"))
return "http://hl7.org/fhir/sid/icd-9";
if (r.equals("2.16.840.1.113883.6.104"))
return "http://hl7.org/fhir/sid/icd-9";
if (r.equals("2.16.840.1.113883.6.103"))
return "http://hl7.org/fhir/sid/icd-9"; //todo: confirm this
if (r.equals("2.16.840.1.113883.6.73"))
return "http://hl7.org/fhir/sid/atc";
if (r.equals("2.16.840.1.113883.3.26.1.1"))
return "http://ncimeta.nci.nih.gov";
if (r.equals("2.16.840.1.113883.3.26.1.1.1"))
return "http://ncimeta.nci.nih.gov";
if (r.equals("2.16.840.1.113883.6.88"))
return "http://www.nlm.nih.gov/research/umls/rxnorm"; // todo: confirm this
if (r.equals("2.16.840.1.113883.5.1008"))
return "http://hl7.org/fhir/v3/NullFlavor";
if (r.equals("2.16.840.1.113883.5.111"))
return "http://hl7.org/fhir/v3/RoleCode";
if (r.equals("2.16.840.1.113883.5.4"))
return "http://hl7.org/fhir/v3/ActCode";
if (r.equals("2.16.840.1.113883.5.8"))
return "http://hl7.org/fhir/v3/ActReason";
if (r.equals("2.16.840.1.113883.5.83"))
return "http://hl7.org/fhir/v3/ObservationInterpretation";
if (r.equals("2.16.840.1.113883.6.238"))
return "http://hl7.org/fhir/v3/Race";
if (r.equals("2.16.840.1.113883.6.59"))
return "http://hl7.org/fhir/sid/cvx";
if (r.equals("2.16.840.1.113883.12.292"))
return "http://hl7.org/fhir/sid/cvx";
if (r.equals("2.16.840.1.113883.6.12"))
return "http://www.ama-assn.org/go/cpt";
if (r.startsWith("2.16.840.1.113883.12."))
return "http://hl7.org/fhir/sid/v2-"+r.substring(21);
return null;
}
}
public class OIDUtils {
/*
2.16.840.1.113883.3.72.5.2 - NIST owns this
2.16.840.1.113883.4.6 - National Provider Identifier
2.16.840.1.113883.6.21 - UB92
2.16.840.1.113883.6.69 - NDC
*/
public static String getUriForOid(String r) {
if (r.equals("2.16.840.1.113883.6.96"))
return "http://snomed.info/sct";
if (r.equals("2.16.840.1.113883.6.1"))
return "http://loinc.org";
if (r.equals("2.16.840.1.113883.6.8"))
return "http://unitsofmeasure.org";
if (r.equals("2.16.840.1.113883.6.3"))
return "http://hl7.org/fhir/sid/icd-10";
if (r.equals("2.16.840.1.113883.6.42"))
return "http://hl7.org/fhir/sid/icd-9";
if (r.equals("2.16.840.1.113883.6.104"))
return "http://hl7.org/fhir/sid/icd-9";
if (r.equals("2.16.840.1.113883.6.103"))
return "http://hl7.org/fhir/sid/icd-9"; //todo: confirm this
if (r.equals("2.16.840.1.113883.6.73"))
return "http://hl7.org/fhir/sid/atc";
if (r.equals("2.16.840.1.113883.3.26.1.1"))
return "http://ncimeta.nci.nih.gov";
if (r.equals("2.16.840.1.113883.3.26.1.1.1"))
return "http://ncimeta.nci.nih.gov";
if (r.equals("2.16.840.1.113883.6.88"))
return "http://www.nlm.nih.gov/research/umls/rxnorm"; // todo: confirm this
if (r.equals("2.16.840.1.113883.5.1008"))
return "http://hl7.org/fhir/v3/NullFlavor";
if (r.equals("2.16.840.1.113883.5.111"))
return "http://hl7.org/fhir/v3/RoleCode";
if (r.equals("2.16.840.1.113883.5.4"))
return "http://hl7.org/fhir/v3/ActCode";
if (r.equals("2.16.840.1.113883.5.8"))
return "http://hl7.org/fhir/v3/ActReason";
if (r.equals("2.16.840.1.113883.5.83"))
return "http://hl7.org/fhir/v3/ObservationInterpretation";
if (r.equals("2.16.840.1.113883.6.238"))
return "http://hl7.org/fhir/v3/Race";
if (r.equals("2.16.840.1.113883.6.59"))
return "http://hl7.org/fhir/sid/cvx";
if (r.equals("2.16.840.1.113883.12.292"))
return "http://hl7.org/fhir/sid/cvx";
if (r.equals("2.16.840.1.113883.6.12"))
return "http://www.ama-assn.org/go/cpt";
if (r.startsWith("2.16.840.1.113883.12."))
return "http://hl7.org/fhir/sid/v2-"+r.substring(21);
return null;
}
}