Header fixes

This commit is contained in:
James 2017-03-18 09:38:33 -04:00
parent d009e836bb
commit 8e800a10b7
13 changed files with 23994 additions and 23994 deletions

View File

@ -20,45 +20,45 @@ package org.hl7.fhir.utilities;
* #L% * #L%
*/ */
import java.util.Date; import java.util.Date;
public class TranslatingUtilities { public class TranslatingUtilities {
public interface TranslationServices { public interface TranslationServices {
String translate(String context, String value); String translate(String context, String value);
String translate(String context, String value, Object... args); String translate(String context, String value, Object... args);
String toStr(int value); String toStr(int value);
String toStr(Date value); String toStr(Date value);
} }
private TranslationServices translator; private TranslationServices translator;
public TranslationServices getTranslator() { public TranslationServices getTranslator() {
return translator; return translator;
} }
public void setTranslator(TranslationServices translator) { public void setTranslator(TranslationServices translator) {
this.translator = translator; this.translator = translator;
} }
protected String translate(String context, String value) { protected String translate(String context, String value) {
return hasTranslator() ? translator.translate(context, value) : value; return hasTranslator() ? translator.translate(context, value) : value;
} }
protected String translate(String context, String value, Object... args) { protected String translate(String context, String value, Object... args) {
return hasTranslator() ? translator.translate(context, value, args) : String.format(value, args); return hasTranslator() ? translator.translate(context, value, args) : String.format(value, args);
} }
protected boolean hasTranslator() { protected boolean hasTranslator() {
return translator != null; return translator != null;
} }
public String toStr(int value) { public String toStr(int value) {
return hasTranslator() ? translator.toStr(value) : Integer.toString(value); return hasTranslator() ? translator.toStr(value) : Integer.toString(value);
} }
public String toStr(Date value) { public String toStr(Date value) {
return hasTranslator() ? translator.toStr(value) : value.toString(); return hasTranslator() ? translator.toStr(value) : value.toString();
} }
} }

View File

@ -1,31 +1,31 @@
/* /*
Copyright (c) 2011+, HL7, Inc Copyright (c) 2011+, HL7, Inc
All rights reserved. All rights reserved.
Redistribution and use in source and binary forms, with or without modification, Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met: are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this * Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer. list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice, * Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution. and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to * Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific endorse or promote products derived from this software without specific
prior written permission. prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE. POSSIBILITY OF SUCH DAMAGE.
*/ */
package org.hl7.fhir.utilities.xhtml; package org.hl7.fhir.utilities.xhtml;
/* /*
@ -48,322 +48,322 @@ package org.hl7.fhir.utilities.xhtml;
* #L% * #L%
*/ */
import java.io.FileOutputStream; import java.io.FileOutputStream;
import java.io.IOException; import java.io.IOException;
import java.io.OutputStream; import java.io.OutputStream;
import java.io.OutputStreamWriter; import java.io.OutputStreamWriter;
import java.io.StringWriter; import java.io.StringWriter;
import java.io.UnsupportedEncodingException; import java.io.UnsupportedEncodingException;
import java.io.Writer; import java.io.Writer;
import org.hl7.fhir.utilities.Utilities; import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.xml.IXMLWriter; import org.hl7.fhir.utilities.xml.IXMLWriter;
import org.w3c.dom.Element; import org.w3c.dom.Element;
public class XhtmlComposer { public class XhtmlComposer {
public static final String XHTML_NS = "http://www.w3.org/1999/xhtml"; public static final String XHTML_NS = "http://www.w3.org/1999/xhtml";
private boolean pretty; private boolean pretty;
private boolean xmlOnly; private boolean xmlOnly;
public boolean isPretty() { public boolean isPretty() {
return pretty; return pretty;
} }
public XhtmlComposer setPretty(boolean pretty) { public XhtmlComposer setPretty(boolean pretty) {
this.pretty = pretty; this.pretty = pretty;
return this; return this;
} }
public boolean isXmlOnly() { public boolean isXmlOnly() {
return xmlOnly; return xmlOnly;
} }
public XhtmlComposer setXmlOnly(boolean xmlOnly) { public XhtmlComposer setXmlOnly(boolean xmlOnly) {
this.xmlOnly = xmlOnly; this.xmlOnly = xmlOnly;
return this; return this;
} }
private Writer dst; private Writer dst;
public String compose(XhtmlDocument doc) throws IOException { public String compose(XhtmlDocument doc) throws IOException {
StringWriter sdst = new StringWriter(); StringWriter sdst = new StringWriter();
dst = sdst; dst = sdst;
composeDoc(doc); composeDoc(doc);
return sdst.toString(); return sdst.toString();
} }
public String compose(XhtmlNode node) throws IOException { public String compose(XhtmlNode node) throws IOException {
StringWriter sdst = new StringWriter(); StringWriter sdst = new StringWriter();
dst = sdst; dst = sdst;
writeNode("", node); writeNode("", node);
return sdst.toString(); return sdst.toString();
} }
public void compose(OutputStream stream, XhtmlDocument doc) throws IOException { public void compose(OutputStream stream, XhtmlDocument doc) throws IOException {
byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF }; byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF };
stream.write(bom); stream.write(bom);
dst = new OutputStreamWriter(stream, "UTF-8"); dst = new OutputStreamWriter(stream, "UTF-8");
composeDoc(doc); composeDoc(doc);
dst.flush(); dst.flush();
} }
private void composeDoc(XhtmlDocument doc) throws IOException { private void composeDoc(XhtmlDocument doc) throws IOException {
// headers.... // headers....
// dst.append("<html>" + (isPretty() ? "\r\n" : "")); // dst.append("<html>" + (isPretty() ? "\r\n" : ""));
for (XhtmlNode c : doc.getChildNodes()) for (XhtmlNode c : doc.getChildNodes())
writeNode(" ", c); writeNode(" ", c);
// dst.append("</html>" + (isPretty() ? "\r\n" : "")); // dst.append("</html>" + (isPretty() ? "\r\n" : ""));
} }
private void writeNode(String indent, XhtmlNode node) throws IOException { private void writeNode(String indent, XhtmlNode node) throws IOException {
if (node.getNodeType() == NodeType.Comment) if (node.getNodeType() == NodeType.Comment)
writeComment(indent, node); writeComment(indent, node);
else if (node.getNodeType() == NodeType.DocType) else if (node.getNodeType() == NodeType.DocType)
writeDocType(node); writeDocType(node);
else if (node.getNodeType() == NodeType.Instruction) else if (node.getNodeType() == NodeType.Instruction)
writeInstruction(node); writeInstruction(node);
else if (node.getNodeType() == NodeType.Element) else if (node.getNodeType() == NodeType.Element)
writeElement(indent, node); writeElement(indent, node);
else if (node.getNodeType() == NodeType.Document) else if (node.getNodeType() == NodeType.Document)
writeDocument(indent, node); writeDocument(indent, node);
else if (node.getNodeType() == NodeType.Text) else if (node.getNodeType() == NodeType.Text)
writeText(node); writeText(node);
else if (node.getNodeType() == null) else if (node.getNodeType() == null)
throw new IOException("Null node type"); throw new IOException("Null node type");
else else
throw new IOException("Unknown node type: "+node.getNodeType().toString()); throw new IOException("Unknown node type: "+node.getNodeType().toString());
} }
private void writeText(XhtmlNode node) throws IOException { private void writeText(XhtmlNode node) throws IOException {
for (char c : node.getContent().toCharArray()) for (char c : node.getContent().toCharArray())
{ {
if (c == '&') if (c == '&')
dst.append("&amp;"); dst.append("&amp;");
else if (c == '<') else if (c == '<')
dst.append("&lt;"); dst.append("&lt;");
else if (c == '>') else if (c == '>')
dst.append("&gt;"); dst.append("&gt;");
else if (c == '"') else if (c == '"')
dst.append("&quot;"); dst.append("&quot;");
else if (xmlOnly) { else if (xmlOnly) {
dst.append(c); dst.append(c);
} else { } else {
if (c == XhtmlNode.NBSP.charAt(0)) if (c == XhtmlNode.NBSP.charAt(0))
dst.append("&nbsp;"); dst.append("&nbsp;");
else if (c == (char) 0xA7) else if (c == (char) 0xA7)
dst.append("&sect;"); dst.append("&sect;");
else if (c == (char) 169) else if (c == (char) 169)
dst.append("&copy;"); dst.append("&copy;");
else if (c == (char) 8482) else if (c == (char) 8482)
dst.append("&trade;"); dst.append("&trade;");
else if (c == (char) 956) else if (c == (char) 956)
dst.append("&mu;"); dst.append("&mu;");
else if (c == (char) 174) else if (c == (char) 174)
dst.append("&reg;"); dst.append("&reg;");
else else
dst.append(c); dst.append(c);
} }
} }
} }
private void writeComment(String indent, XhtmlNode node) throws IOException { private void writeComment(String indent, XhtmlNode node) throws IOException {
dst.append(indent + "<!-- " + node.getContent().trim() + " -->" + (isPretty() ? "\r\n" : "")); dst.append(indent + "<!-- " + node.getContent().trim() + " -->" + (isPretty() ? "\r\n" : ""));
} }
private void writeDocType(XhtmlNode node) throws IOException { private void writeDocType(XhtmlNode node) throws IOException {
dst.append("<!" + node.getContent() + ">\r\n"); dst.append("<!" + node.getContent() + ">\r\n");
} }
private void writeInstruction(XhtmlNode node) throws IOException { private void writeInstruction(XhtmlNode node) throws IOException {
dst.append("<?" + node.getContent() + "?>\r\n"); dst.append("<?" + node.getContent() + "?>\r\n");
} }
private String escapeHtml(String s) { private String escapeHtml(String s) {
if (s == null || s.equals("")) if (s == null || s.equals(""))
return null; return null;
StringBuilder b = new StringBuilder(); StringBuilder b = new StringBuilder();
for (char c : s.toCharArray()) for (char c : s.toCharArray())
if (c == '<') if (c == '<')
b.append("&lt;"); b.append("&lt;");
else if (c == '>') else if (c == '>')
b.append("&gt;"); b.append("&gt;");
else if (c == '"') else if (c == '"')
b.append("&quot;"); b.append("&quot;");
else if (c == '&') else if (c == '&')
b.append("&amp;"); b.append("&amp;");
else else
b.append(c); b.append(c);
return b.toString(); return b.toString();
} }
private String attributes(XhtmlNode node) { private String attributes(XhtmlNode node) {
StringBuilder s = new StringBuilder(); StringBuilder s = new StringBuilder();
for (String n : node.getAttributes().keySet()) for (String n : node.getAttributes().keySet())
s.append(" " + n + "=\"" + escapeHtml(node.getAttributes().get(n)) + "\""); s.append(" " + n + "=\"" + escapeHtml(node.getAttributes().get(n)) + "\"");
return s.toString(); return s.toString();
} }
private void writeElement(String indent, XhtmlNode node) throws IOException { private void writeElement(String indent, XhtmlNode node) throws IOException {
if (!pretty) if (!pretty)
indent = ""; indent = "";
if (node.getChildNodes().size() == 0) if (node.getChildNodes().size() == 0)
dst.append(indent + "<" + node.getName() + attributes(node) + "/>" + (isPretty() ? "\r\n" : "")); dst.append(indent + "<" + node.getName() + attributes(node) + "/>" + (isPretty() ? "\r\n" : ""));
else { else {
boolean act = node.allChildrenAreText(); boolean act = node.allChildrenAreText();
if (act || !pretty) if (act || !pretty)
dst.append(indent + "<" + node.getName() + attributes(node)+">"); dst.append(indent + "<" + node.getName() + attributes(node)+">");
else else
dst.append(indent + "<" + node.getName() + attributes(node) + ">\r\n"); dst.append(indent + "<" + node.getName() + attributes(node) + ">\r\n");
if (node.getName() == "head" && node.getElement("meta") == null) if (node.getName() == "head" && node.getElement("meta") == null)
dst.append(indent + " <meta http-equiv=\"Content-Type\" content=\"text/html; charset=UTF-8\"/>" + (isPretty() ? "\r\n" : "")); dst.append(indent + " <meta http-equiv=\"Content-Type\" content=\"text/html; charset=UTF-8\"/>" + (isPretty() ? "\r\n" : ""));
for (XhtmlNode c : node.getChildNodes()) for (XhtmlNode c : node.getChildNodes())
writeNode(indent + " ", c); writeNode(indent + " ", c);
if (act) if (act)
dst.append("</" + node.getName() + ">" + (isPretty() ? "\r\n" : "")); dst.append("</" + node.getName() + ">" + (isPretty() ? "\r\n" : ""));
else if (node.getChildNodes().get(node.getChildNodes().size() - 1).getNodeType() == NodeType.Text) else if (node.getChildNodes().get(node.getChildNodes().size() - 1).getNodeType() == NodeType.Text)
dst.append((isPretty() ? "\r\n"+ indent : "") + "</" + node.getName() + ">" + (isPretty() ? "\r\n" : "")); dst.append((isPretty() ? "\r\n"+ indent : "") + "</" + node.getName() + ">" + (isPretty() ? "\r\n" : ""));
else else
dst.append(indent + "</" + node.getName() + ">" + (isPretty() ? "\r\n" : "")); dst.append(indent + "</" + node.getName() + ">" + (isPretty() ? "\r\n" : ""));
} }
} }
private void writeDocument(String indent, XhtmlNode node) throws IOException { private void writeDocument(String indent, XhtmlNode node) throws IOException {
indent = ""; indent = "";
for (XhtmlNode c : node.getChildNodes()) for (XhtmlNode c : node.getChildNodes())
writeNode(indent, c); writeNode(indent, c);
} }
public void compose(IXMLWriter xml, XhtmlNode node) throws IOException { public void compose(IXMLWriter xml, XhtmlNode node) throws IOException {
if (node.getNodeType() == NodeType.Comment) if (node.getNodeType() == NodeType.Comment)
xml.comment(node.getContent(), isPretty()); xml.comment(node.getContent(), isPretty());
else if (node.getNodeType() == NodeType.Element) else if (node.getNodeType() == NodeType.Element)
composeElement(xml, node); composeElement(xml, node);
else if (node.getNodeType() == NodeType.Text) else if (node.getNodeType() == NodeType.Text)
xml.text(node.getContent()); xml.text(node.getContent());
else else
throw new Error("Unhandled node type: "+node.getNodeType().toString()); throw new Error("Unhandled node type: "+node.getNodeType().toString());
} }
private void composeElement(IXMLWriter xml, XhtmlNode node) throws IOException { private void composeElement(IXMLWriter xml, XhtmlNode node) throws IOException {
for (String n : node.getAttributes().keySet()) { for (String n : node.getAttributes().keySet()) {
if (n.equals("xmlns")) if (n.equals("xmlns"))
xml.setDefaultNamespace(node.getAttributes().get(n)); xml.setDefaultNamespace(node.getAttributes().get(n));
else if (n.startsWith("xmlns:")) else if (n.startsWith("xmlns:"))
xml.namespace(n.substring(6), node.getAttributes().get(n)); xml.namespace(n.substring(6), node.getAttributes().get(n));
else else
xml.attribute(n, node.getAttributes().get(n)); xml.attribute(n, node.getAttributes().get(n));
} }
xml.enter(XHTML_NS, node.getName()); xml.enter(XHTML_NS, node.getName());
for (XhtmlNode n : node.getChildNodes()) for (XhtmlNode n : node.getChildNodes())
compose(xml, n); compose(xml, n);
xml.exit(XHTML_NS, node.getName()); xml.exit(XHTML_NS, node.getName());
} }
public String composePlainText(XhtmlNode x) { public String composePlainText(XhtmlNode x) {
StringBuilder b = new StringBuilder(); StringBuilder b = new StringBuilder();
composePlainText(x, b, false); composePlainText(x, b, false);
return b.toString().trim(); return b.toString().trim();
} }
private boolean composePlainText(XhtmlNode x, StringBuilder b, boolean lastWS) { private boolean composePlainText(XhtmlNode x, StringBuilder b, boolean lastWS) {
if (x.getNodeType() == NodeType.Text) { if (x.getNodeType() == NodeType.Text) {
String s = x.getContent(); String s = x.getContent();
if (!lastWS & (s.startsWith(" ") || s.startsWith("\r") || s.startsWith("\n") || s.endsWith("\t"))) { if (!lastWS & (s.startsWith(" ") || s.startsWith("\r") || s.startsWith("\n") || s.endsWith("\t"))) {
b.append(" "); b.append(" ");
lastWS = true; lastWS = true;
} }
String st = s.trim().replace("\r", " ").replace("\n", " ").replace("\t", " "); String st = s.trim().replace("\r", " ").replace("\n", " ").replace("\t", " ");
while (st.contains(" ")) while (st.contains(" "))
st = st.replace(" ", " "); st = st.replace(" ", " ");
if (!Utilities.noString(st)) { if (!Utilities.noString(st)) {
b.append(st); b.append(st);
lastWS = false; lastWS = false;
if (!lastWS & (s.endsWith(" ") || s.endsWith("\r") || s.endsWith("\n") || s.endsWith("\t"))) { if (!lastWS & (s.endsWith(" ") || s.endsWith("\r") || s.endsWith("\n") || s.endsWith("\t"))) {
b.append(" "); b.append(" ");
lastWS = true; lastWS = true;
} }
} }
return lastWS; return lastWS;
} else if (x.getNodeType() == NodeType.Element) { } else if (x.getNodeType() == NodeType.Element) {
if (x.getName().equals("li")) { if (x.getName().equals("li")) {
b.append("* "); b.append("* ");
lastWS = true; lastWS = true;
} }
for (XhtmlNode n : x.getChildNodes()) { for (XhtmlNode n : x.getChildNodes()) {
lastWS = composePlainText(n, b, lastWS); lastWS = composePlainText(n, b, lastWS);
} }
if (x.getName().equals("p")) { if (x.getName().equals("p")) {
b.append("\r\n\r\n"); b.append("\r\n\r\n");
lastWS = true; lastWS = true;
} }
if (x.getName().equals("br") || x.getName().equals("li")) { if (x.getName().equals("br") || x.getName().equals("li")) {
b.append("\r\n"); b.append("\r\n");
lastWS = true; lastWS = true;
} }
return lastWS; return lastWS;
} else } else
return lastWS; return lastWS;
} }
public void compose(Element div, XhtmlNode x) { public void compose(Element div, XhtmlNode x) {
for (XhtmlNode child : x.getChildNodes()) { for (XhtmlNode child : x.getChildNodes()) {
appendChild(div, child); appendChild(div, child);
} }
} }
private void appendChild(Element e, XhtmlNode node) { private void appendChild(Element e, XhtmlNode node) {
if (node.getNodeType() == NodeType.Comment) if (node.getNodeType() == NodeType.Comment)
e.appendChild(e.getOwnerDocument().createComment(node.getContent())); e.appendChild(e.getOwnerDocument().createComment(node.getContent()));
else if (node.getNodeType() == NodeType.DocType) else if (node.getNodeType() == NodeType.DocType)
throw new Error("not done yet"); throw new Error("not done yet");
else if (node.getNodeType() == NodeType.Instruction) else if (node.getNodeType() == NodeType.Instruction)
e.appendChild(e.getOwnerDocument().createProcessingInstruction("", node.getContent())); e.appendChild(e.getOwnerDocument().createProcessingInstruction("", node.getContent()));
else if (node.getNodeType() == NodeType.Text) else if (node.getNodeType() == NodeType.Text)
e.appendChild(e.getOwnerDocument().createTextNode(node.getContent())); e.appendChild(e.getOwnerDocument().createTextNode(node.getContent()));
else if (node.getNodeType() == NodeType.Element) { else if (node.getNodeType() == NodeType.Element) {
Element child = e.getOwnerDocument().createElementNS(XHTML_NS, node.getName()); Element child = e.getOwnerDocument().createElementNS(XHTML_NS, node.getName());
e.appendChild(child); e.appendChild(child);
for (XhtmlNode c : node.getChildNodes()) { for (XhtmlNode c : node.getChildNodes()) {
appendChild(child, c); appendChild(child, c);
} }
} else } else
throw new Error("Unknown node type: "+node.getNodeType().toString()); throw new Error("Unknown node type: "+node.getNodeType().toString());
} }
public void compose(OutputStream stream, XhtmlNode x) throws IOException { public void compose(OutputStream stream, XhtmlNode x) throws IOException {
byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF }; byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF };
stream.write(bom); stream.write(bom);
dst = new OutputStreamWriter(stream, "UTF-8"); dst = new OutputStreamWriter(stream, "UTF-8");
dst.append("<html><head><link rel=\"stylesheet\" href=\"fhir.css\"/></head><body>\r\n"); dst.append("<html><head><link rel=\"stylesheet\" href=\"fhir.css\"/></head><body>\r\n");
writeNode("", x); writeNode("", x);
dst.append("</body></html>\r\n"); dst.append("</body></html>\r\n");
dst.flush(); dst.flush();
} }
public void composeDocument(FileOutputStream f, XhtmlNode xhtml) throws IOException { public void composeDocument(FileOutputStream f, XhtmlNode xhtml) throws IOException {
byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF }; byte[] bom = new byte[] { (byte)0xEF, (byte)0xBB, (byte)0xBF };
f.write(bom); f.write(bom);
dst = new OutputStreamWriter(f, "UTF-8"); dst = new OutputStreamWriter(f, "UTF-8");
writeNode("", xhtml); writeNode("", xhtml);
dst.flush(); dst.flush();
dst.close(); dst.close();
} }
public String composeEx(XhtmlNode node) { public String composeEx(XhtmlNode node) {
try { try {
return compose(node); return compose(node);
} catch (IOException e) { } catch (IOException e) {
throw new Error(e); throw new Error(e);
} }
} }
} }

View File

@ -20,263 +20,263 @@ package org.hl7.fhir.convertors;
* #L% * #L%
*/ */
/* /*
Copyright (c) 2011+, HL7, Inc. Copyright (c) 2011+, HL7, Inc.
All rights reserved. All rights reserved.
Redistribution and use in source and binary forms, with or without modification, Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met: are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this * Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer. list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice, * Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution. and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to * Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific endorse or promote products derived from this software without specific
prior written permission. prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE. POSSIBILITY OF SUCH DAMAGE.
*/ */
import java.io.InputStream; import java.io.InputStream;
import java.util.ArrayList; import java.util.ArrayList;
import java.util.List; import java.util.List;
import javax.xml.parsers.DocumentBuilder; import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory; import javax.xml.parsers.DocumentBuilderFactory;
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder; import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
import org.hl7.fhir.utilities.xml.XMLUtil; import org.hl7.fhir.utilities.xml.XMLUtil;
import org.w3c.dom.Document; import org.w3c.dom.Document;
import org.w3c.dom.Element; import org.w3c.dom.Element;
import org.w3c.dom.Node; import org.w3c.dom.Node;
public class CDAUtilities { public class CDAUtilities {
private Document doc; private Document doc;
public CDAUtilities(InputStream stream) throws Exception { public CDAUtilities(InputStream stream) throws Exception {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
factory.setNamespaceAware(true); factory.setNamespaceAware(true);
DocumentBuilder builder = factory.newDocumentBuilder(); DocumentBuilder builder = factory.newDocumentBuilder();
doc = builder.parse(stream); doc = builder.parse(stream);
basicChecks(); basicChecks();
} }
private void basicChecks() throws Exception { private void basicChecks() throws Exception {
Element e = doc.getDocumentElement(); Element e = doc.getDocumentElement();
rule(e.getNamespaceURI().equals("urn:hl7-org:v3"), "CDA namespace must be "); rule(e.getNamespaceURI().equals("urn:hl7-org:v3"), "CDA namespace must be ");
rule(e.getNodeName().equals("ClinicalDocument"), "CDA root name must be ClinicalDocument"); rule(e.getNodeName().equals("ClinicalDocument"), "CDA root name must be ClinicalDocument");
} }
private void rule(boolean test, String message) throws Exception { private void rule(boolean test, String message) throws Exception {
if (!test) if (!test)
throw new Exception(message); throw new Exception(message);
} }
public Element getElement() { public Element getElement() {
return doc.getDocumentElement(); return doc.getDocumentElement();
} }
public void checkTemplateId(Element e, String templateId) throws Exception { public void checkTemplateId(Element e, String templateId) throws Exception {
rule(hasTemplateId(e, templateId), "Template Id '"+templateId+"' not found"); rule(hasTemplateId(e, templateId), "Template Id '"+templateId+"' not found");
} }
public Element getChild(Element e, String[] names) throws Exception { public Element getChild(Element e, String[] names) throws Exception {
for (String n : names) { for (String n : names) {
if (e == null) if (e == null)
return null; return null;
e = getChild(e, n); e = getChild(e, n);
} }
return e; return e;
} }
public Element getChild(Element element, String name) throws Exception { public Element getChild(Element element, String name) throws Exception {
if (element == null) if (element == null)
return null; return null;
Element e = null; Element e = null;
Node n = element.getFirstChild(); Node n = element.getFirstChild();
while (n != null) { while (n != null) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name)) { if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name)) {
if (e == null) { if (e == null) {
e = (Element) n; e = (Element) n;
} else { } else {
throw new Exception("multiple matches found for "+name); throw new Exception("multiple matches found for "+name);
} }
} }
n = n.getNextSibling(); n = n.getNextSibling();
} }
return e; return e;
} }
public Element getChildByAttribute(Element element, String name, String attrname, String value) throws Exception { public Element getChildByAttribute(Element element, String name, String attrname, String value) throws Exception {
if (element == null) if (element == null)
return null; return null;
Element e = null; Element e = null;
Node n = element.getFirstChild(); Node n = element.getFirstChild();
while (n != null) { while (n != null) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name) && value.equals(((Element) n).getAttribute(attrname))) { if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name) && value.equals(((Element) n).getAttribute(attrname))) {
if (e == null) { if (e == null) {
e = (Element) n; e = (Element) n;
} else { } else {
throw new Exception("multiple matches found for "+name); throw new Exception("multiple matches found for "+name);
} }
} }
n = n.getNextSibling(); n = n.getNextSibling();
} }
return e; return e;
} }
public List<Element> getChildren(Element element, String name) { public List<Element> getChildren(Element element, String name) {
List<Element> l = new ArrayList<Element>(); List<Element> l = new ArrayList<Element>();
if (element != null) { if (element != null) {
Node n = element.getFirstChild(); Node n = element.getFirstChild();
while (n != null) { while (n != null) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name)) { if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals(name)) {
l.add((Element) n); l.add((Element) n);
} }
n = n.getNextSibling(); n = n.getNextSibling();
} }
} }
return l; return l;
} }
public Element getDescendent(Element element, String path) throws Exception { public Element getDescendent(Element element, String path) throws Exception {
String[] p = path.split("\\/"); String[] p = path.split("\\/");
return getDescendent(element, p); return getDescendent(element, p);
} }
public Element getDescendent(Element e, String[] path) throws Exception { public Element getDescendent(Element e, String[] path) throws Exception {
for (String n : path) { for (String n : path) {
if (e == null) if (e == null)
return e; return e;
e = getChild(e, n); e = getChild(e, n);
} }
return e; return e;
} }
public boolean hasTemplateId(Element e, String tid) { public boolean hasTemplateId(Element e, String tid) {
if (e == null) if (e == null)
return false; return false;
boolean found = false; boolean found = false;
Node n = e.getFirstChild(); Node n = e.getFirstChild();
while (n != null && !found) { while (n != null && !found) {
if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals("templateId") && tid.equals(((Element) n).getAttribute("root"))) if (n.getNodeType() == Node.ELEMENT_NODE && n.getNodeName().equals("templateId") && tid.equals(((Element) n).getAttribute("root")))
found = true; found = true;
n = n.getNextSibling(); n = n.getNextSibling();
} }
return found; return found;
} }
public String getStatus(Element act) throws Exception { public String getStatus(Element act) throws Exception {
if (act == null) if (act == null)
return null; return null;
Element sc = getChild(act, "statusCode"); Element sc = getChild(act, "statusCode");
if (sc == null) if (sc == null)
return null; return null;
else else
return sc.getAttribute("code"); return sc.getAttribute("code");
} }
public String getSeverity(Element observation) throws Exception { public String getSeverity(Element observation) throws Exception {
for (Element e : getChildren(observation, "entryRelationship")) { for (Element e : getChildren(observation, "entryRelationship")) {
Element child = getChild(e, "observation"); Element child = getChild(e, "observation");
if (hasTemplateId(child, "2.16.840.1.113883.10.20.22.4.8")) if (hasTemplateId(child, "2.16.840.1.113883.10.20.22.4.8"))
return getChild(child, "value").getAttribute("code"); return getChild(child, "value").getAttribute("code");
} }
return null; return null;
} }
public String showTemplateIds(Element element) { public String showTemplateIds(Element element) {
List<Element> list = getChildren(element, "templateId"); List<Element> list = getChildren(element, "templateId");
CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder(); CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
for (Element e : list) { for (Element e : list) {
if (e.hasAttribute("extension")) if (e.hasAttribute("extension"))
b.append(e.getAttribute("root")+"::"+e.getAttribute("extension")); b.append(e.getAttribute("root")+"::"+e.getAttribute("extension"));
else else
b.append(e.getAttribute("root")); b.append(e.getAttribute("root"));
} }
return b.toString(); return b.toString();
} }
public Element getlastChild(Element e) { public Element getlastChild(Element e) {
Node n = e.getLastChild(); Node n = e.getLastChild();
while (n != null && n.getNodeType() != Node.ELEMENT_NODE) while (n != null && n.getNodeType() != Node.ELEMENT_NODE)
n = n.getPreviousSibling(); n = n.getPreviousSibling();
return n == null ? null : (Element) n; return n == null ? null : (Element) n;
} }
/** /**
* This method looks up an object by it's id, and only returns it if has a child by the given name * This method looks up an object by it's id, and only returns it if has a child by the given name
* (resolving identifier based cross references) * (resolving identifier based cross references)
* *
* @param id * @param id
* @param childName * @param childName
* @return * @return
* @throws Exception * @throws Exception
*/ */
public Element getById(Element id, String childName) throws Exception { public Element getById(Element id, String childName) throws Exception {
return getById(doc.getDocumentElement(), id, childName); return getById(doc.getDocumentElement(), id, childName);
} }
private Element getById(Element e, Element id, String childName) throws Exception { private Element getById(Element e, Element id, String childName) throws Exception {
Element c = XMLUtil.getFirstChild(e); Element c = XMLUtil.getFirstChild(e);
while (c != null) { while (c != null) {
Element i = getChild(c, "id"); Element i = getChild(c, "id");
if (i != null && matchesAsId(i, id) && getChild(c, childName) != null) if (i != null && matchesAsId(i, id) && getChild(c, childName) != null)
return c; return c;
Element m = getById(c, id, childName); Element m = getById(c, id, childName);
if (m != null) if (m != null)
return m; return m;
c = XMLUtil.getNextSibling(c); c = XMLUtil.getNextSibling(c);
} }
return null; return null;
} }
private boolean matchesAsId(Element i1, Element i2) { private boolean matchesAsId(Element i1, Element i2) {
String r1 = i1.getAttribute("root"); String r1 = i1.getAttribute("root");
String r2 = i2.getAttribute("root"); String r2 = i2.getAttribute("root");
String e1 = i1.getAttribute("extension"); String e1 = i1.getAttribute("extension");
String e2 = i2.getAttribute("extension"); String e2 = i2.getAttribute("extension");
return (r1 != null && r1.equals(r2)) && ((e1 == null && e2 == null) || (e1 != null && e1.equals(e2))); return (r1 != null && r1.equals(r2)) && ((e1 == null && e2 == null) || (e1 != null && e1.equals(e2)));
} }
public Element getByXmlId(String id) { public Element getByXmlId(String id) {
return getByXmlId(doc.getDocumentElement(), id); return getByXmlId(doc.getDocumentElement(), id);
} }
private Element getByXmlId(Element e, String value) { private Element getByXmlId(Element e, String value) {
Element c = XMLUtil.getFirstChild(e); Element c = XMLUtil.getFirstChild(e);
while (c != null) { while (c != null) {
String id = c.getAttribute("ID"); String id = c.getAttribute("ID");
if (id != null && id.equals(value)) if (id != null && id.equals(value))
return c; return c;
Element m = getByXmlId(c, value); Element m = getByXmlId(c, value);
if (m != null) if (m != null)
return m; return m;
c = XMLUtil.getNextSibling(c); c = XMLUtil.getNextSibling(c);
} }
return null; return null;
} }
} }

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@ -20,15 +20,15 @@ package org.hl7.fhir.convertors;
* #L% * #L%
*/ */
public class CcdaExtensions { public class CcdaExtensions {
public final static String DAF_NAME_RACE = "http://hl7.org/fhir/StructureDefinition/us-core-race"; public final static String DAF_NAME_RACE = "http://hl7.org/fhir/StructureDefinition/us-core-race";
public final static String DAF_NAME_ETHNICITY = "http://hl7.org/fhir/StructureDefinition/us-core-ethnicity"; public final static String DAF_NAME_ETHNICITY = "http://hl7.org/fhir/StructureDefinition/us-core-ethnicity";
public final static String BASE = "http://hl7.org/ccda"; public final static String BASE = "http://hl7.org/ccda";
public final static String NAME_RELIGION = BASE+"/religious-affiliation"; public final static String NAME_RELIGION = BASE+"/religious-affiliation";
public final static String NAME_BIRTHPLACE = BASE+"birthplace"; public final static String NAME_BIRTHPLACE = BASE+"birthplace";
public final static String NAME_LANG_PROF = BASE+"proficiency-level"; public final static String NAME_LANG_PROF = BASE+"proficiency-level";
} }

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@ -20,7 +20,7 @@ package org.hl7.fhir.convertors;
* #L% * #L%
*/ */
public class ConverterBase { public class ConverterBase {
} }

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@ -20,19 +20,19 @@ package org.hl7.fhir.convertors;
* #L% * #L%
*/ */
import org.hl7.fhir.dstu3.model.CodeSystem; import org.hl7.fhir.dstu3.model.CodeSystem;
import org.hl7.fhir.dstu3.model.ValueSet; import org.hl7.fhir.dstu3.model.ValueSet;
import org.hl7.fhir.exceptions.FHIRException; import org.hl7.fhir.exceptions.FHIRException;
public interface VersionConvertorAdvisor { public interface VersionConvertorAdvisor {
boolean ignoreEntry(org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent src); boolean ignoreEntry(org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent src);
// called ? // called ?
org.hl7.fhir.instance.model.Resource convert(org.hl7.fhir.dstu3.model.Resource resource) throws FHIRException; org.hl7.fhir.instance.model.Resource convert(org.hl7.fhir.dstu3.model.Resource resource) throws FHIRException;
// called when an r2 value set has a codeSystem in it // called when an r2 value set has a codeSystem in it
void handleCodeSystem(CodeSystem tgtcs, ValueSet source); void handleCodeSystem(CodeSystem tgtcs, ValueSet source);
CodeSystem getCodeSystem(ValueSet src); CodeSystem getCodeSystem(ValueSet src);
} }

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@ -20,468 +20,468 @@ package org.hl7.fhir.dstu2.utils;
* #L% * #L%
*/ */
import java.net.URISyntaxException; import java.net.URISyntaxException;
/* /*
Copyright (c) 2011+, HL7, Inc Copyright (c) 2011+, HL7, Inc
All rights reserved. All rights reserved.
Redistribution and use in source and binary forms, with or without modification, Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met: are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this * Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer. list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice, * Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution. and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to * Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific endorse or promote products derived from this software without specific
prior written permission. prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE. POSSIBILITY OF SUCH DAMAGE.
*/ */
import java.util.ArrayList; import java.util.ArrayList;
import java.util.Iterator; import java.util.Iterator;
import java.util.List; import java.util.List;
import org.hl7.fhir.instance.model.BooleanType; import org.hl7.fhir.instance.model.BooleanType;
import org.hl7.fhir.instance.model.CodeType; import org.hl7.fhir.instance.model.CodeType;
import org.hl7.fhir.instance.model.CodeableConcept; import org.hl7.fhir.instance.model.CodeableConcept;
import org.hl7.fhir.instance.model.Coding; import org.hl7.fhir.instance.model.Coding;
import org.hl7.fhir.instance.model.DataElement; import org.hl7.fhir.instance.model.DataElement;
import org.hl7.fhir.instance.model.DomainResource; import org.hl7.fhir.instance.model.DomainResource;
import org.hl7.fhir.instance.model.Element; import org.hl7.fhir.instance.model.Element;
import org.hl7.fhir.instance.model.ElementDefinition; import org.hl7.fhir.instance.model.ElementDefinition;
import org.hl7.fhir.instance.model.Extension; import org.hl7.fhir.instance.model.Extension;
import org.hl7.fhir.instance.model.ExtensionHelper; import org.hl7.fhir.instance.model.ExtensionHelper;
import org.hl7.fhir.instance.model.Factory; import org.hl7.fhir.instance.model.Factory;
import org.hl7.fhir.instance.model.Identifier; import org.hl7.fhir.instance.model.Identifier;
import org.hl7.fhir.instance.model.IntegerType; import org.hl7.fhir.instance.model.IntegerType;
import org.hl7.fhir.instance.model.MarkdownType; import org.hl7.fhir.instance.model.MarkdownType;
import org.hl7.fhir.instance.model.PrimitiveType; import org.hl7.fhir.instance.model.PrimitiveType;
import org.hl7.fhir.instance.model.Questionnaire.GroupComponent; import org.hl7.fhir.instance.model.Questionnaire.GroupComponent;
import org.hl7.fhir.instance.model.Questionnaire.QuestionComponent; import org.hl7.fhir.instance.model.Questionnaire.QuestionComponent;
import org.hl7.fhir.instance.model.Reference; import org.hl7.fhir.instance.model.Reference;
import org.hl7.fhir.instance.model.StringType; import org.hl7.fhir.instance.model.StringType;
import org.hl7.fhir.instance.model.Type; import org.hl7.fhir.instance.model.Type;
import org.hl7.fhir.instance.model.UriType; import org.hl7.fhir.instance.model.UriType;
import org.hl7.fhir.instance.model.ValueSet; import org.hl7.fhir.instance.model.ValueSet;
import org.hl7.fhir.instance.model.ValueSet.ConceptDefinitionComponent; import org.hl7.fhir.instance.model.ValueSet.ConceptDefinitionComponent;
import org.hl7.fhir.instance.model.ValueSet.ValueSetCodeSystemComponent; import org.hl7.fhir.instance.model.ValueSet.ValueSetCodeSystemComponent;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source; import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
import org.hl7.fhir.exceptions.FHIRFormatError; import org.hl7.fhir.exceptions.FHIRFormatError;
import org.hl7.fhir.utilities.Utilities; import org.hl7.fhir.utilities.Utilities;
public class ToolingExtensions { public class ToolingExtensions {
// validated // validated
public static final String EXT_SUBSUMES = "http://hl7.org/fhir/StructureDefinition/valueset-subsumes"; public static final String EXT_SUBSUMES = "http://hl7.org/fhir/StructureDefinition/valueset-subsumes";
private static final String EXT_OID = "http://hl7.org/fhir/StructureDefinition/valueset-oid"; private static final String EXT_OID = "http://hl7.org/fhir/StructureDefinition/valueset-oid";
public static final String EXT_DEPRECATED = "http://hl7.org/fhir/StructureDefinition/valueset-deprecated"; public static final String EXT_DEPRECATED = "http://hl7.org/fhir/StructureDefinition/valueset-deprecated";
public static final String EXT_DEFINITION = "http://hl7.org/fhir/StructureDefinition/valueset-definition"; public static final String EXT_DEFINITION = "http://hl7.org/fhir/StructureDefinition/valueset-definition";
public static final String EXT_COMMENT = "http://hl7.org/fhir/StructureDefinition/valueset-comments"; public static final String EXT_COMMENT = "http://hl7.org/fhir/StructureDefinition/valueset-comments";
private static final String EXT_IDENTIFIER = "http://hl7.org/fhir/StructureDefinition/identifier"; private static final String EXT_IDENTIFIER = "http://hl7.org/fhir/StructureDefinition/identifier";
private static final String EXT_TRANSLATION = "http://hl7.org/fhir/StructureDefinition/translation"; private static final String EXT_TRANSLATION = "http://hl7.org/fhir/StructureDefinition/translation";
public static final String EXT_ISSUE_SOURCE = "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source"; public static final String EXT_ISSUE_SOURCE = "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source";
public static final String EXT_DISPLAY_HINT = "http://hl7.org/fhir/StructureDefinition/structuredefinition-display-hint"; public static final String EXT_DISPLAY_HINT = "http://hl7.org/fhir/StructureDefinition/structuredefinition-display-hint";
public static final String EXT_REPLACED_BY = "http://hl7.org/fhir/StructureDefinition/valueset-replacedby"; public static final String EXT_REPLACED_BY = "http://hl7.org/fhir/StructureDefinition/valueset-replacedby";
public static final String EXT_JSON_TYPE = "http://hl7.org/fhir/StructureDefinition/structuredefinition-json-type"; public static final String EXT_JSON_TYPE = "http://hl7.org/fhir/StructureDefinition/structuredefinition-json-type";
public static final String EXT_XML_TYPE = "http://hl7.org/fhir/StructureDefinition/structuredefinition-xml-type"; public static final String EXT_XML_TYPE = "http://hl7.org/fhir/StructureDefinition/structuredefinition-xml-type";
public static final String EXT_REGEX = "http://hl7.org/fhir/StructureDefinition/structuredefinition-regex"; public static final String EXT_REGEX = "http://hl7.org/fhir/StructureDefinition/structuredefinition-regex";
public static final String EXT_EXPRESSION = "http://hl7.org/fhir/StructureDefinition/structuredefinition-expression"; public static final String EXT_EXPRESSION = "http://hl7.org/fhir/StructureDefinition/structuredefinition-expression";
public static final String EXT_SEARCH_EXPRESSION = "http://hl7.org/fhir/StructureDefinition/searchparameter-expression"; public static final String EXT_SEARCH_EXPRESSION = "http://hl7.org/fhir/StructureDefinition/searchparameter-expression";
// unregistered? // unregistered?
public static final String EXT_FLYOVER = "http://hl7.org/fhir/Profile/questionnaire-extensions#flyover"; public static final String EXT_FLYOVER = "http://hl7.org/fhir/Profile/questionnaire-extensions#flyover";
private static final String EXT_QTYPE = "http://www.healthintersections.com.au/fhir/Profile/metadata#type"; private static final String EXT_QTYPE = "http://www.healthintersections.com.au/fhir/Profile/metadata#type";
private static final String EXT_QREF = "http://www.healthintersections.com.au/fhir/Profile/metadata#reference"; private static final String EXT_QREF = "http://www.healthintersections.com.au/fhir/Profile/metadata#reference";
private static final String EXTENSION_FILTER_ONLY = "http://www.healthintersections.com.au/fhir/Profile/metadata#expandNeedsFilter"; private static final String EXTENSION_FILTER_ONLY = "http://www.healthintersections.com.au/fhir/Profile/metadata#expandNeedsFilter";
private static final String EXT_TYPE = "http://www.healthintersections.com.au/fhir/Profile/metadata#type"; private static final String EXT_TYPE = "http://www.healthintersections.com.au/fhir/Profile/metadata#type";
private static final String EXT_REFERENCE = "http://www.healthintersections.com.au/fhir/Profile/metadata#reference"; private static final String EXT_REFERENCE = "http://www.healthintersections.com.au/fhir/Profile/metadata#reference";
private static final String EXT_ALLOWABLE_UNITS = "http://hl7.org/fhir/StructureDefinition/elementdefinition-allowedUnits"; private static final String EXT_ALLOWABLE_UNITS = "http://hl7.org/fhir/StructureDefinition/elementdefinition-allowedUnits";
public static final String EXT_CIMI_REFERENCE = "http://hl7.org/fhir/StructureDefinition/cimi-reference"; public static final String EXT_CIMI_REFERENCE = "http://hl7.org/fhir/StructureDefinition/cimi-reference";
public static final String EXT_UNCLOSED = "http://hl7.org/fhir/StructureDefinition/valueset-unclosed"; public static final String EXT_UNCLOSED = "http://hl7.org/fhir/StructureDefinition/valueset-unclosed";
public static final String EXT_FMM_LEVEL = "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"; public static final String EXT_FMM_LEVEL = "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm";
// specific extension helpers // specific extension helpers
public static Extension makeIssueSource(Source source) { public static Extension makeIssueSource(Source source) {
Extension ex = new Extension(); Extension ex = new Extension();
// todo: write this up and get it published with the pack (and handle the redirect?) // todo: write this up and get it published with the pack (and handle the redirect?)
ex.setUrl(ToolingExtensions.EXT_ISSUE_SOURCE); ex.setUrl(ToolingExtensions.EXT_ISSUE_SOURCE);
CodeType c = new CodeType(); CodeType c = new CodeType();
c.setValue(source.toString()); c.setValue(source.toString());
ex.setValue(c); ex.setValue(c);
return ex; return ex;
} }
public static boolean hasExtension(DomainResource de, String url) { public static boolean hasExtension(DomainResource de, String url) {
return getExtension(de, url) != null; return getExtension(de, url) != null;
} }
public static boolean hasExtension(Element e, String url) { public static boolean hasExtension(Element e, String url) {
return getExtension(e, url) != null; return getExtension(e, url) != null;
} }
public static void addStringExtension(DomainResource dr, String url, String content) { public static void addStringExtension(DomainResource dr, String url, String content) {
if (!Utilities.noString(content)) { if (!Utilities.noString(content)) {
Extension ex = getExtension(dr, url); Extension ex = getExtension(dr, url);
if (ex != null) if (ex != null)
ex.setValue(new StringType(content)); ex.setValue(new StringType(content));
else else
dr.getExtension().add(Factory.newExtension(url, new StringType(content), true)); dr.getExtension().add(Factory.newExtension(url, new StringType(content), true));
} }
} }
public static void addStringExtension(Element e, String url, String content) { public static void addStringExtension(Element e, String url, String content) {
if (!Utilities.noString(content)) { if (!Utilities.noString(content)) {
Extension ex = getExtension(e, url); Extension ex = getExtension(e, url);
if (ex != null) if (ex != null)
ex.setValue(new StringType(content)); ex.setValue(new StringType(content));
else else
e.getExtension().add(Factory.newExtension(url, new StringType(content), true)); e.getExtension().add(Factory.newExtension(url, new StringType(content), true));
} }
} }
public static void addIntegerExtension(DomainResource dr, String url, int value) { public static void addIntegerExtension(DomainResource dr, String url, int value) {
Extension ex = getExtension(dr, url); Extension ex = getExtension(dr, url);
if (ex != null) if (ex != null)
ex.setValue(new IntegerType(value)); ex.setValue(new IntegerType(value));
else else
dr.getExtension().add(Factory.newExtension(url, new IntegerType(value), true)); dr.getExtension().add(Factory.newExtension(url, new IntegerType(value), true));
} }
public static void addComment(Element nc, String comment) { public static void addComment(Element nc, String comment) {
if (!Utilities.noString(comment)) if (!Utilities.noString(comment))
nc.getExtension().add(Factory.newExtension(EXT_COMMENT, Factory.newString_(comment), true)); nc.getExtension().add(Factory.newExtension(EXT_COMMENT, Factory.newString_(comment), true));
} }
public static void markDeprecated(Element nc) { public static void markDeprecated(Element nc) {
setDeprecated(nc); setDeprecated(nc);
} }
public static void addSubsumes(ConceptDefinitionComponent nc, String code) { public static void addSubsumes(ConceptDefinitionComponent nc, String code) {
nc.getModifierExtension().add(Factory.newExtension(EXT_SUBSUMES, Factory.newCode(code), true)); nc.getModifierExtension().add(Factory.newExtension(EXT_SUBSUMES, Factory.newCode(code), true));
} }
public static void addDefinition(Element nc, String definition) { public static void addDefinition(Element nc, String definition) {
if (!Utilities.noString(definition)) if (!Utilities.noString(definition))
nc.getExtension().add(Factory.newExtension(EXT_DEFINITION, Factory.newString_(definition), true)); nc.getExtension().add(Factory.newExtension(EXT_DEFINITION, Factory.newString_(definition), true));
} }
public static void addDisplayHint(Element def, String hint) { public static void addDisplayHint(Element def, String hint) {
if (!Utilities.noString(hint)) if (!Utilities.noString(hint))
def.getExtension().add(Factory.newExtension(EXT_DISPLAY_HINT, Factory.newString_(hint), true)); def.getExtension().add(Factory.newExtension(EXT_DISPLAY_HINT, Factory.newString_(hint), true));
} }
public static String getDisplayHint(Element def) { public static String getDisplayHint(Element def) {
return readStringExtension(def, EXT_DISPLAY_HINT); return readStringExtension(def, EXT_DISPLAY_HINT);
} }
public static String readStringExtension(Element c, String uri) { public static String readStringExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri); Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null) if (ex == null)
return null; return null;
if (ex.getValue() instanceof UriType) if (ex.getValue() instanceof UriType)
return ((UriType) ex.getValue()).getValue(); return ((UriType) ex.getValue()).getValue();
if (!(ex.getValue() instanceof StringType)) if (!(ex.getValue() instanceof StringType))
return null; return null;
return ((StringType) ex.getValue()).getValue(); return ((StringType) ex.getValue()).getValue();
} }
public static String readStringExtension(DomainResource c, String uri) { public static String readStringExtension(DomainResource c, String uri) {
Extension ex = getExtension(c, uri); Extension ex = getExtension(c, uri);
if (ex == null) if (ex == null)
return null; return null;
if ((ex.getValue() instanceof StringType)) if ((ex.getValue() instanceof StringType))
return ((StringType) ex.getValue()).getValue(); return ((StringType) ex.getValue()).getValue();
if ((ex.getValue() instanceof UriType)) if ((ex.getValue() instanceof UriType))
return ((UriType) ex.getValue()).getValue(); return ((UriType) ex.getValue()).getValue();
if ((ex.getValue() instanceof MarkdownType)) if ((ex.getValue() instanceof MarkdownType))
return ((MarkdownType) ex.getValue()).getValue(); return ((MarkdownType) ex.getValue()).getValue();
return null; return null;
} }
@SuppressWarnings("unchecked") @SuppressWarnings("unchecked")
public static PrimitiveType<Type> readPrimitiveExtension(DomainResource c, String uri) { public static PrimitiveType<Type> readPrimitiveExtension(DomainResource c, String uri) {
Extension ex = getExtension(c, uri); Extension ex = getExtension(c, uri);
if (ex == null) if (ex == null)
return null; return null;
return (PrimitiveType<Type>) ex.getValue(); return (PrimitiveType<Type>) ex.getValue();
} }
public static boolean findStringExtension(Element c, String uri) { public static boolean findStringExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri); Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null) if (ex == null)
return false; return false;
if (!(ex.getValue() instanceof StringType)) if (!(ex.getValue() instanceof StringType))
return false; return false;
return !Utilities.noString(((StringType) ex.getValue()).getValue()); return !Utilities.noString(((StringType) ex.getValue()).getValue());
} }
public static Boolean readBooleanExtension(Element c, String uri) { public static Boolean readBooleanExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri); Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null) if (ex == null)
return null; return null;
if (!(ex.getValue() instanceof BooleanType)) if (!(ex.getValue() instanceof BooleanType))
return null; return null;
return ((BooleanType) ex.getValue()).getValue(); return ((BooleanType) ex.getValue()).getValue();
} }
public static boolean findBooleanExtension(Element c, String uri) { public static boolean findBooleanExtension(Element c, String uri) {
Extension ex = ExtensionHelper.getExtension(c, uri); Extension ex = ExtensionHelper.getExtension(c, uri);
if (ex == null) if (ex == null)
return false; return false;
if (!(ex.getValue() instanceof BooleanType)) if (!(ex.getValue() instanceof BooleanType))
return false; return false;
return true; return true;
} }
public static String getComment(ConceptDefinitionComponent c) { public static String getComment(ConceptDefinitionComponent c) {
return readStringExtension(c, EXT_COMMENT); return readStringExtension(c, EXT_COMMENT);
} }
public static Boolean getDeprecated(Element c) { public static Boolean getDeprecated(Element c) {
return readBooleanExtension(c, EXT_DEPRECATED); return readBooleanExtension(c, EXT_DEPRECATED);
} }
public static boolean hasComment(ConceptDefinitionComponent c) { public static boolean hasComment(ConceptDefinitionComponent c) {
return findStringExtension(c, EXT_COMMENT); return findStringExtension(c, EXT_COMMENT);
} }
public static boolean hasDeprecated(Element c) { public static boolean hasDeprecated(Element c) {
return findBooleanExtension(c, EXT_DEPRECATED); return findBooleanExtension(c, EXT_DEPRECATED);
} }
public static List<CodeType> getSubsumes(ConceptDefinitionComponent c) { public static List<CodeType> getSubsumes(ConceptDefinitionComponent c) {
List<CodeType> res = new ArrayList<CodeType>(); List<CodeType> res = new ArrayList<CodeType>();
for (Extension e : c.getExtension()) { for (Extension e : c.getExtension()) {
if (EXT_SUBSUMES.equals(e.getUrl())) if (EXT_SUBSUMES.equals(e.getUrl()))
res.add((CodeType) e.getValue()); res.add((CodeType) e.getValue());
} }
return res; return res;
} }
public static void addFlyOver(GroupComponent group, String text) { public static void addFlyOver(GroupComponent group, String text) {
if (!Utilities.noString(text)) if (!Utilities.noString(text))
group.getExtension().add(Factory.newExtension(EXT_FLYOVER, Factory.newString_(text), true)); group.getExtension().add(Factory.newExtension(EXT_FLYOVER, Factory.newString_(text), true));
} }
public static void setQuestionType(GroupComponent group, String text) { public static void setQuestionType(GroupComponent group, String text) {
if (!Utilities.noString(text)) if (!Utilities.noString(text))
group.getExtension().add(Factory.newExtension(EXT_QTYPE, Factory.newString_(text), true)); group.getExtension().add(Factory.newExtension(EXT_QTYPE, Factory.newString_(text), true));
} }
public static void setQuestionReference(GroupComponent group, String text) { public static void setQuestionReference(GroupComponent group, String text) {
if (!Utilities.noString(text)) if (!Utilities.noString(text))
group.getExtension().add(Factory.newExtension(EXT_QREF, Factory.newString_(text), true)); group.getExtension().add(Factory.newExtension(EXT_QREF, Factory.newString_(text), true));
} }
public static void addFlyOver(Element element, String text) { public static void addFlyOver(Element element, String text) {
element.getExtension().add(Factory.newExtension(EXT_FLYOVER, Factory.newString_(text), true)); element.getExtension().add(Factory.newExtension(EXT_FLYOVER, Factory.newString_(text), true));
} }
public static void addFilterOnly(Reference element, boolean value) { public static void addFilterOnly(Reference element, boolean value) {
element.getExtension().add(Factory.newExtension(EXTENSION_FILTER_ONLY, Factory.newBoolean(value), true)); element.getExtension().add(Factory.newExtension(EXTENSION_FILTER_ONLY, Factory.newBoolean(value), true));
} }
public static void addType(GroupComponent group, String value) { public static void addType(GroupComponent group, String value) {
group.getExtension().add(Factory.newExtension(EXT_TYPE, Factory.newString_(value), true)); group.getExtension().add(Factory.newExtension(EXT_TYPE, Factory.newString_(value), true));
} }
public static void addReference(QuestionComponent group, String value) { public static void addReference(QuestionComponent group, String value) {
group.getExtension().add(Factory.newExtension(EXT_REFERENCE, Factory.newString_(value), true)); group.getExtension().add(Factory.newExtension(EXT_REFERENCE, Factory.newString_(value), true));
} }
public static void addIdentifier(Element element, Identifier value) { public static void addIdentifier(Element element, Identifier value) {
element.getExtension().add(Factory.newExtension(EXT_IDENTIFIER, value, true)); element.getExtension().add(Factory.newExtension(EXT_IDENTIFIER, value, true));
} }
/** /**
* @param name the identity of the extension of interest * @param name the identity of the extension of interest
* @return The extension, if on this element, else null * @return The extension, if on this element, else null
*/ */
public static Extension getExtension(DomainResource resource, String name) { public static Extension getExtension(DomainResource resource, String name) {
if (name == null) if (name == null)
return null; return null;
if (!resource.hasExtension()) if (!resource.hasExtension())
return null; return null;
for (Extension e : resource.getExtension()) { for (Extension e : resource.getExtension()) {
if (name.equals(e.getUrl())) if (name.equals(e.getUrl()))
return e; return e;
} }
return null; return null;
} }
public static Extension getExtension(Element el, String name) { public static Extension getExtension(Element el, String name) {
if (name == null) if (name == null)
return null; return null;
if (!el.hasExtension()) if (!el.hasExtension())
return null; return null;
for (Extension e : el.getExtension()) { for (Extension e : el.getExtension()) {
if (name.equals(e.getUrl())) if (name.equals(e.getUrl()))
return e; return e;
} }
return null; return null;
} }
public static void setStringExtension(DomainResource resource, String uri, String value) { public static void setStringExtension(DomainResource resource, String uri, String value) {
Extension ext = getExtension(resource, uri); Extension ext = getExtension(resource, uri);
if (ext != null) if (ext != null)
ext.setValue(new StringType(value)); ext.setValue(new StringType(value));
else else
resource.getExtension().add(new Extension(new UriType(uri)).setValue(new StringType(value))); resource.getExtension().add(new Extension(new UriType(uri)).setValue(new StringType(value)));
} }
public static String getOID(ValueSetCodeSystemComponent define) { public static String getOID(ValueSetCodeSystemComponent define) {
return readStringExtension(define, EXT_OID); return readStringExtension(define, EXT_OID);
} }
public static String getOID(ValueSet vs) { public static String getOID(ValueSet vs) {
return readStringExtension(vs, EXT_OID); return readStringExtension(vs, EXT_OID);
} }
public static void setOID(ValueSetCodeSystemComponent define, String oid) throws FHIRFormatError, URISyntaxException { public static void setOID(ValueSetCodeSystemComponent define, String oid) throws FHIRFormatError, URISyntaxException {
if (!oid.startsWith("urn:oid:")) if (!oid.startsWith("urn:oid:"))
throw new FHIRFormatError("Error in OID format"); throw new FHIRFormatError("Error in OID format");
if (oid.startsWith("urn:oid:urn:oid:")) if (oid.startsWith("urn:oid:urn:oid:"))
throw new FHIRFormatError("Error in OID format"); throw new FHIRFormatError("Error in OID format");
define.getExtension().add(Factory.newExtension(EXT_OID, Factory.newUri(oid), false)); define.getExtension().add(Factory.newExtension(EXT_OID, Factory.newUri(oid), false));
} }
public static void setOID(ValueSet vs, String oid) throws FHIRFormatError, URISyntaxException { public static void setOID(ValueSet vs, String oid) throws FHIRFormatError, URISyntaxException {
if (!oid.startsWith("urn:oid:")) if (!oid.startsWith("urn:oid:"))
throw new FHIRFormatError("Error in OID format"); throw new FHIRFormatError("Error in OID format");
if (oid.startsWith("urn:oid:urn:oid:")) if (oid.startsWith("urn:oid:urn:oid:"))
throw new FHIRFormatError("Error in OID format"); throw new FHIRFormatError("Error in OID format");
vs.getExtension().add(Factory.newExtension(EXT_OID, Factory.newUri(oid), false)); vs.getExtension().add(Factory.newExtension(EXT_OID, Factory.newUri(oid), false));
} }
public static boolean hasLanguageTranslation(Element element, String lang) { public static boolean hasLanguageTranslation(Element element, String lang) {
for (Extension e : element.getExtension()) { for (Extension e : element.getExtension()) {
if (e.getUrl().equals(EXT_TRANSLATION)) { if (e.getUrl().equals(EXT_TRANSLATION)) {
Extension e1 = ExtensionHelper.getExtension(e, "lang"); Extension e1 = ExtensionHelper.getExtension(e, "lang");
if (e1 != null && e1.getValue() instanceof CodeType && ((CodeType) e.getValue()).getValue().equals(lang)) if (e1 != null && e1.getValue() instanceof CodeType && ((CodeType) e.getValue()).getValue().equals(lang))
return true; return true;
} }
} }
return false; return false;
} }
public static String getLanguageTranslation(Element element, String lang) { public static String getLanguageTranslation(Element element, String lang) {
for (Extension e : element.getExtension()) { for (Extension e : element.getExtension()) {
if (e.getUrl().equals(EXT_TRANSLATION)) { if (e.getUrl().equals(EXT_TRANSLATION)) {
Extension e1 = ExtensionHelper.getExtension(e, "lang"); Extension e1 = ExtensionHelper.getExtension(e, "lang");
if (e1 != null && e1.getValue() instanceof CodeType && ((CodeType) e.getValue()).getValue().equals(lang)) { if (e1 != null && e1.getValue() instanceof CodeType && ((CodeType) e.getValue()).getValue().equals(lang)) {
e1 = ExtensionHelper.getExtension(e, "content"); e1 = ExtensionHelper.getExtension(e, "content");
return ((StringType) e.getValue()).getValue(); return ((StringType) e.getValue()).getValue();
} }
} }
} }
return null; return null;
} }
public static void addLanguageTranslation(Element element, String lang, String value) { public static void addLanguageTranslation(Element element, String lang, String value) {
Extension extension = new Extension().setUrl(EXT_TRANSLATION); Extension extension = new Extension().setUrl(EXT_TRANSLATION);
extension.addExtension().setUrl("lang").setValue(new StringType(lang)); extension.addExtension().setUrl("lang").setValue(new StringType(lang));
extension.addExtension().setUrl("content").setValue(new StringType(value)); extension.addExtension().setUrl("content").setValue(new StringType(value));
element.getExtension().add(extension); element.getExtension().add(extension);
} }
public static Type getAllowedUnits(ElementDefinition eld) { public static Type getAllowedUnits(ElementDefinition eld) {
for (Extension e : eld.getExtension()) for (Extension e : eld.getExtension())
if (e.getUrl().equals(EXT_ALLOWABLE_UNITS)) if (e.getUrl().equals(EXT_ALLOWABLE_UNITS))
return e.getValue(); return e.getValue();
return null; return null;
} }
public static void setAllowableUnits(ElementDefinition eld, CodeableConcept cc) { public static void setAllowableUnits(ElementDefinition eld, CodeableConcept cc) {
for (Extension e : eld.getExtension()) for (Extension e : eld.getExtension())
if (e.getUrl().equals(EXT_ALLOWABLE_UNITS)) { if (e.getUrl().equals(EXT_ALLOWABLE_UNITS)) {
e.setValue(cc); e.setValue(cc);
return; return;
} }
eld.getExtension().add(new Extension().setUrl(EXT_ALLOWABLE_UNITS).setValue(cc)); eld.getExtension().add(new Extension().setUrl(EXT_ALLOWABLE_UNITS).setValue(cc));
} }
public static List<Extension> getExtensions(Element element, String url) { public static List<Extension> getExtensions(Element element, String url) {
List<Extension> results = new ArrayList<Extension>(); List<Extension> results = new ArrayList<Extension>();
for (Extension ex : element.getExtension()) for (Extension ex : element.getExtension())
if (ex.getUrl().equals(url)) if (ex.getUrl().equals(url))
results.add(ex); results.add(ex);
return results; return results;
} }
public static List<Extension> getExtensions(DomainResource resource, String url) { public static List<Extension> getExtensions(DomainResource resource, String url) {
List<Extension> results = new ArrayList<Extension>(); List<Extension> results = new ArrayList<Extension>();
for (Extension ex : resource.getExtension()) for (Extension ex : resource.getExtension())
if (ex.getUrl().equals(url)) if (ex.getUrl().equals(url))
results.add(ex); results.add(ex);
return results; return results;
} }
public static void addDEReference(DataElement de, String value) { public static void addDEReference(DataElement de, String value) {
for (Extension e : de.getExtension()) for (Extension e : de.getExtension())
if (e.getUrl().equals(EXT_CIMI_REFERENCE)) { if (e.getUrl().equals(EXT_CIMI_REFERENCE)) {
e.setValue(new UriType(value)); e.setValue(new UriType(value));
return; return;
} }
de.getExtension().add(new Extension().setUrl(EXT_CIMI_REFERENCE).setValue(new UriType(value))); de.getExtension().add(new Extension().setUrl(EXT_CIMI_REFERENCE).setValue(new UriType(value)));
} }
public static void setDeprecated(Element nc) { public static void setDeprecated(Element nc) {
for (Extension e : nc.getExtension()) for (Extension e : nc.getExtension())
if (e.getUrl().equals(EXT_DEPRECATED)) { if (e.getUrl().equals(EXT_DEPRECATED)) {
e.setValue(new BooleanType(true)); e.setValue(new BooleanType(true));
return; return;
} }
nc.getExtension().add(new Extension().setUrl(EXT_DEPRECATED).setValue(new BooleanType(true))); nc.getExtension().add(new Extension().setUrl(EXT_DEPRECATED).setValue(new BooleanType(true)));
} }
public static void setExtension(Element focus, String url, Coding c) { public static void setExtension(Element focus, String url, Coding c) {
for (Extension e : focus.getExtension()) for (Extension e : focus.getExtension())
if (e.getUrl().equals(url)) { if (e.getUrl().equals(url)) {
e.setValue(c); e.setValue(c);
return; return;
} }
focus.getExtension().add(new Extension().setUrl(url).setValue(c)); focus.getExtension().add(new Extension().setUrl(url).setValue(c));
} }
public static void removeExtension(DomainResource focus, String url) { public static void removeExtension(DomainResource focus, String url) {
Iterator<Extension> i = focus.getExtension().iterator(); Iterator<Extension> i = focus.getExtension().iterator();
while (i.hasNext()) { while (i.hasNext()) {
Extension e = i.next(); // must be called before you can call i.remove() Extension e = i.next(); // must be called before you can call i.remove()
if (e.getUrl().equals(url)) { if (e.getUrl().equals(url)) {
i.remove(); i.remove();
} }
} }
} }
public static void removeExtension(Element focus, String url) { public static void removeExtension(Element focus, String url) {
Iterator<Extension> i = focus.getExtension().iterator(); Iterator<Extension> i = focus.getExtension().iterator();
while (i.hasNext()) { while (i.hasNext()) {
Extension e = i.next(); // must be called before you can call i.remove() Extension e = i.next(); // must be called before you can call i.remove()
if (e.getUrl().equals(url)) { if (e.getUrl().equals(url)) {
i.remove(); i.remove();
} }
} }
} }
} }

View File

@ -20,64 +20,64 @@ package org.hl7.fhir.utilities;
* #L% * #L%
*/ */
public class OIDUtils { public class OIDUtils {
/* /*
2.16.840.1.113883.3.72.5.2 - NIST owns this 2.16.840.1.113883.3.72.5.2 - NIST owns this
2.16.840.1.113883.4.6 - National Provider Identifier 2.16.840.1.113883.4.6 - National Provider Identifier
2.16.840.1.113883.6.21 - UB92 2.16.840.1.113883.6.21 - UB92
2.16.840.1.113883.6.69 - NDC 2.16.840.1.113883.6.69 - NDC
*/ */
public static String getUriForOid(String r) { public static String getUriForOid(String r) {
if (r.equals("2.16.840.1.113883.6.96")) if (r.equals("2.16.840.1.113883.6.96"))
return "http://snomed.info/sct"; return "http://snomed.info/sct";
if (r.equals("2.16.840.1.113883.6.1")) if (r.equals("2.16.840.1.113883.6.1"))
return "http://loinc.org"; return "http://loinc.org";
if (r.equals("2.16.840.1.113883.6.8")) if (r.equals("2.16.840.1.113883.6.8"))
return "http://unitsofmeasure.org"; return "http://unitsofmeasure.org";
if (r.equals("2.16.840.1.113883.6.3")) if (r.equals("2.16.840.1.113883.6.3"))
return "http://hl7.org/fhir/sid/icd-10"; return "http://hl7.org/fhir/sid/icd-10";
if (r.equals("2.16.840.1.113883.6.42")) if (r.equals("2.16.840.1.113883.6.42"))
return "http://hl7.org/fhir/sid/icd-9"; return "http://hl7.org/fhir/sid/icd-9";
if (r.equals("2.16.840.1.113883.6.104")) if (r.equals("2.16.840.1.113883.6.104"))
return "http://hl7.org/fhir/sid/icd-9"; return "http://hl7.org/fhir/sid/icd-9";
if (r.equals("2.16.840.1.113883.6.103")) if (r.equals("2.16.840.1.113883.6.103"))
return "http://hl7.org/fhir/sid/icd-9"; //todo: confirm this return "http://hl7.org/fhir/sid/icd-9"; //todo: confirm this
if (r.equals("2.16.840.1.113883.6.73")) if (r.equals("2.16.840.1.113883.6.73"))
return "http://hl7.org/fhir/sid/atc"; return "http://hl7.org/fhir/sid/atc";
if (r.equals("2.16.840.1.113883.3.26.1.1")) if (r.equals("2.16.840.1.113883.3.26.1.1"))
return "http://ncimeta.nci.nih.gov"; return "http://ncimeta.nci.nih.gov";
if (r.equals("2.16.840.1.113883.3.26.1.1.1")) if (r.equals("2.16.840.1.113883.3.26.1.1.1"))
return "http://ncimeta.nci.nih.gov"; return "http://ncimeta.nci.nih.gov";
if (r.equals("2.16.840.1.113883.6.88")) if (r.equals("2.16.840.1.113883.6.88"))
return "http://www.nlm.nih.gov/research/umls/rxnorm"; // todo: confirm this return "http://www.nlm.nih.gov/research/umls/rxnorm"; // todo: confirm this
if (r.equals("2.16.840.1.113883.5.1008")) if (r.equals("2.16.840.1.113883.5.1008"))
return "http://hl7.org/fhir/v3/NullFlavor"; return "http://hl7.org/fhir/v3/NullFlavor";
if (r.equals("2.16.840.1.113883.5.111")) if (r.equals("2.16.840.1.113883.5.111"))
return "http://hl7.org/fhir/v3/RoleCode"; return "http://hl7.org/fhir/v3/RoleCode";
if (r.equals("2.16.840.1.113883.5.4")) if (r.equals("2.16.840.1.113883.5.4"))
return "http://hl7.org/fhir/v3/ActCode"; return "http://hl7.org/fhir/v3/ActCode";
if (r.equals("2.16.840.1.113883.5.8")) if (r.equals("2.16.840.1.113883.5.8"))
return "http://hl7.org/fhir/v3/ActReason"; return "http://hl7.org/fhir/v3/ActReason";
if (r.equals("2.16.840.1.113883.5.83")) if (r.equals("2.16.840.1.113883.5.83"))
return "http://hl7.org/fhir/v3/ObservationInterpretation"; return "http://hl7.org/fhir/v3/ObservationInterpretation";
if (r.equals("2.16.840.1.113883.6.238")) if (r.equals("2.16.840.1.113883.6.238"))
return "http://hl7.org/fhir/v3/Race"; return "http://hl7.org/fhir/v3/Race";
if (r.equals("2.16.840.1.113883.6.59")) if (r.equals("2.16.840.1.113883.6.59"))
return "http://hl7.org/fhir/sid/cvx"; return "http://hl7.org/fhir/sid/cvx";
if (r.equals("2.16.840.1.113883.12.292")) if (r.equals("2.16.840.1.113883.12.292"))
return "http://hl7.org/fhir/sid/cvx"; return "http://hl7.org/fhir/sid/cvx";
if (r.equals("2.16.840.1.113883.6.12")) if (r.equals("2.16.840.1.113883.6.12"))
return "http://www.ama-assn.org/go/cpt"; return "http://www.ama-assn.org/go/cpt";
if (r.startsWith("2.16.840.1.113883.12.")) if (r.startsWith("2.16.840.1.113883.12."))
return "http://hl7.org/fhir/sid/v2-"+r.substring(21); return "http://hl7.org/fhir/sid/v2-"+r.substring(21);
return null; return null;
} }
} }