Correct issue with CLI

hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/UploadTerminologyCommand.java

@@ -134,7 +134,7 @@ public class UploadTerminologyCommand extends BaseCommand {
 			for (String nextDataFile : theDatafile) {
 
 				try (FileInputStream fileInputStream = new FileInputStream(nextDataFile)) {
-					if (nextDataFile.endsWith(".csv")) {
+					if (nextDataFile.endsWith(".csv") || nextDataFile.endsWith(".properties")) {
 
 						ourLog.info("Compressing and adding file: {}", nextDataFile);
 						ZipEntry nextEntry = new ZipEntry(stripPath(nextDataFile));

hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/UploadTerminologyCommandTest.java

@@ -64,6 +64,8 @@ public class UploadTerminologyCommandTest extends BaseTest {
 	private File myTextFile = new File(myTextFileName);
 	private File myArchiveFile;
 	private String myArchiveFileName;
+	private String myPropertiesFileName = "target/hello.properties";
+	private File myPropertiesFile = new File(myTextFileName);
 
 	@Test
 	public void testDeltaAdd() throws IOException {
@@ -238,6 +240,8 @@ public class UploadTerminologyCommandTest extends BaseTest {
 	@Test
 	public void testSnapshot() throws IOException {
 
+
+
 		writeConceptAndHierarchyFiles();
 
 		when(myTermLoaderSvc.loadCustom(any(), anyList(), any())).thenReturn(new UploadStatistics(100, new IdType("CodeSystem/101")));
@@ -260,6 +264,33 @@ public class UploadTerminologyCommandTest extends BaseTest {
 		assertThat(IOUtils.toByteArray(listOfDescriptors.get(0).getInputStream()).length, greaterThan(100));
 	}
 
+	@Test
+	public void testPropertiesFile() throws IOException {
+		try (FileWriter w = new FileWriter(myPropertiesFileName, false)) {
+			w.append("a=b\n");
+		}
+
+		when(myTermLoaderSvc.loadCustom(any(), anyList(), any())).thenReturn(new UploadStatistics(100, new IdType("CodeSystem/101")));
+
+		App.main(new String[]{
+			UploadTerminologyCommand.UPLOAD_TERMINOLOGY,
+			"-v", "r4",
+			"-m", "SNAPSHOT",
+			"-t", "http://localhost:" + myPort,
+			"-u", "http://foo",
+			"-d", myPropertiesFileName,
+		});
+
+		verify(myTermLoaderSvc, times(1)).loadCustom(any(), myDescriptorListCaptor.capture(), any());
+
+		List<ITermLoaderSvc.FileDescriptor> listOfDescriptors = myDescriptorListCaptor.getValue();
+		assertEquals(1, listOfDescriptors.size());
+		assertThat(listOfDescriptors.get(0).getFilename(), matchesPattern(".*\\.zip$"));
+		assertThat(IOUtils.toByteArray(listOfDescriptors.get(0).getInputStream()).length, greaterThan(100));
+
+
+	}
+
 	/**
 	 * When transferring large files, we use a local file to store the binary instead of
 	 * using HTTP to transfer a giant base 64 encoded attachment. Hopefully we can
@@ -342,6 +373,7 @@ public class UploadTerminologyCommandTest extends BaseTest {
 		FileUtils.deleteQuietly(myArchiveFile);
 		FileUtils.deleteQuietly(myCodeSystemFile);
 		FileUtils.deleteQuietly(myTextFile);
+		FileUtils.deleteQuietly(myPropertiesFile);
 
 		UploadTerminologyCommand.setTransferSizeLimitForUnitTest(-1);
 	}

src/changes/changes.xml

@@ -73,6 +73,10 @@
 				A missing mandatory was added to the SNOMED CT CodeSystem that is uploaded when SCT is
 				uploaded to the JPA server. Thanks to Anders Havn for the pull request!
 			</action>
+			<action type="fix">
+				An issue with the HAPI FHIR CLI was corrected that prevented the upload of LOINC due to an error
+				regarding the properties file.
+			</action>
 		</release>
 		<release version="4.1.0" date="2019-11-13" description="Jitterbug">
 			<action type="add">