Updates to STU3
This commit is contained in:
parent
40aebba0a7
commit
9a51323e03
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@ -1817,6 +1817,20 @@ public class JsonParser extends BaseParser implements IJsonLikeParser {
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* See #327
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*/
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List<? extends IBase> preProcessedValue = preProcessValues(myDef, theResource, Collections.singletonList(myValue), myChildElem);
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// // Check for undeclared extensions on the declared extension
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// // (grrrrrr....)
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// if (myValue instanceof ISupportsUndeclaredExtensions) {
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// ISupportsUndeclaredExtensions value = (ISupportsUndeclaredExtensions)myValue;
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// List<ExtensionDt> exts = value.getUndeclaredExtensions();
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// if (exts.size() > 0) {
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// ArrayList<IBase> newValueList = new ArrayList<IBase>();
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// newValueList.addAll(preProcessedValue);
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// newValueList.addAll(exts);
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// preProcessedValue = newValueList;
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// }
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// }
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myValue = preProcessedValue.get(0);
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BaseRuntimeElementDefinition<?> def = myDef.getChildElementDefinitionByDatatype(myValue.getClass());
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@ -1,12 +1,14 @@
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package ca.uhn.fhir.parser;
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import static org.junit.Assert.assertEquals;
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import org.junit.AfterClass;
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import org.junit.Ignore;
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import org.junit.Test;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.model.primitive.StringDt;
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import ca.uhn.fhir.util.TestUtil;
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import org.junit.AfterClass;
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import org.junit.Test;
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import static org.junit.Assert.assertEquals;
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/**
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* Created by Sébastien Rivière 12/04/2017
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@ -14,7 +16,7 @@ import static org.junit.Assert.assertEquals;
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public class ElementWithExtensionDstu2Test {
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ca.uhn.fhir.parser.ElementWithExtensionDstu2Test.class);
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private static final FhirContext ctx = FhirContext.forDstu2();
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private static FhirContext ctx = FhirContext.forDstu2();
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@AfterClass
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public static void afterClassClearContext() {
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@ -22,11 +24,13 @@ public class ElementWithExtensionDstu2Test {
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}
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@Test
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@Ignore
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public void testExtensionOnPrimitiveExtensionJson() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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patient.getPetName().addUndeclaredExtension(false, "http://hl7.org/fhir/StructureDefinition/iso21090-nullFlavor", new StringDt("UNK"));
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final IParser parser = ctx.newJsonParser().setPrettyPrint(true);
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parser.setServerBaseUrl("http://foo");
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final String json = parser.encodeResourceToString(patient);
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ourLog.info(json);
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@ -41,6 +45,7 @@ public class ElementWithExtensionDstu2Test {
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patient.setId("1");
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patient.getPetName().addUndeclaredExtension(false, "http://hl7.org/fhir/StructureDefinition/iso21090-nullFlavor", new StringDt("UNK"));
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final IParser parser = ctx.newXmlParser().setPrettyPrint(true);
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parser.setServerBaseUrl("http://foo");
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final String xml = parser.encodeResourceToString(patient);
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ourLog.info(xml);
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@ -50,11 +55,13 @@ public class ElementWithExtensionDstu2Test {
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}
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@Test
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@Ignore
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public void testExtensionOnIDDatatypeJson() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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patient.getId().addUndeclaredExtension(false, "http://hl7.org/fhir/StructureDefinition/iso21090-nullFlavor", new StringDt("UNK"));
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final IParser parser = ctx.newJsonParser().setPrettyPrint(true);
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parser.setServerBaseUrl("http://foo");
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final String json = parser.encodeResourceToString(patient);
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ourLog.info(json);
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@ -64,11 +71,13 @@ public class ElementWithExtensionDstu2Test {
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}
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@Test
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@Ignore
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public void testExtensionOnIDDatatypeXml() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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patient.getId().addUndeclaredExtension(false, "http://hl7.org/fhir/StructureDefinition/iso21090-nullFlavor", new StringDt("UNK"));
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final IParser parser = ctx.newXmlParser().setPrettyPrint(true);
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parser.setServerBaseUrl("http://foo");
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final String xml = parser.encodeResourceToString(patient);
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ourLog.info(xml);
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@ -78,11 +87,13 @@ public class ElementWithExtensionDstu2Test {
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}
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@Test
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@Ignore
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public void testExtensionOnIDDatatypeExtensionJson() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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patient.getCustomId().addUndeclaredExtension(false, "http://hl7.org/fhir/StructureDefinition/iso21090-nullFlavor", new StringDt("UNK"));
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final IParser parser = ctx.newJsonParser().setPrettyPrint(true);
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parser.setServerBaseUrl("http://foo");
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final String json = parser.encodeResourceToString(patient);
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ourLog.info(json);
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@ -92,11 +103,13 @@ public class ElementWithExtensionDstu2Test {
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}
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@Test
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@Ignore
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public void testExtensionOnIDDatatypeExtensionXml() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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patient.getCustomId().addUndeclaredExtension(false, "http://hl7.org/fhir/StructureDefinition/iso21090-nullFlavor", new StringDt("UNK"));
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final IParser parser = ctx.newXmlParser().setPrettyPrint(true);
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parser.setServerBaseUrl("http://foo");
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final String xml = parser.encodeResourceToString(patient);
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ourLog.info(xml);
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@ -2005,7 +2005,7 @@ public class JsonParserDstu2Test {
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//Check no NPE if base server not configure
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newPatient = ourCtx.newJsonParser().parseResource(MyPatientWithCustomUrlExtension.class, new StringReader(parsedPatient));
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assertNull("myName", newPatient.getPetName());
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assertNull("myName", newPatient.getPetName().getValue());
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assertEquals("myName", ((StringDt) newPatient.getUndeclaredExtensionsByUrl("http://www.example.com/petname").get(0).getValue()).getValue());
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}
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@ -2815,7 +2815,7 @@ public class XmlParserDstu2Test {
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//Check no NPE if base server not configure
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newPatient = ourCtx.newXmlParser().parseResource(MyPatientWithCustomUrlExtension.class, new StringReader(parsedPatient));
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assertNull("myName", newPatient.getPetName());
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assertNull("myName", newPatient.getPetName().getValue());
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assertEquals("myName", ((StringDt) newPatient.getUndeclaredExtensionsByUrl("http://www.example.com/petname").get(0).getValue()).getValue());
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}
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@ -19,9 +19,6 @@ import org.hl7.fhir.dstu3.model.Type;
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import org.hl7.fhir.exceptions.DefinitionException;
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import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.exceptions.FHIRFormatError;
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import org.hl7.fhir.utilities.TextFile;
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import com.sun.corba.se.impl.ior.NewObjectKeyTemplateBase;
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public class ObjectConverter {
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@ -1,5 +1,7 @@
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package org.hl7.fhir.dstu3.model;
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import static org.apache.commons.lang3.StringUtils.defaultString;
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/*
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Copyright (c) 2011+, HL7, Inc.
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All rights reserved.
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@ -39,7 +41,6 @@ import org.apache.commons.lang3.ObjectUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.lang3.Validate;
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import org.apache.commons.lang3.builder.HashCodeBuilder;
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import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.instance.model.api.IBaseResource;
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import org.hl7.fhir.instance.model.api.IIdType;
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import org.hl7.fhir.instance.model.api.IPrimitiveType;
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@ -243,41 +244,12 @@ public final class IdType extends UriType implements IPrimitiveType<String>, IId
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return new IdType(getValue());
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}
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private String determineLocalPrefix(String theValue) {
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if (theValue == null || theValue.isEmpty()) {
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return null;
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}
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if (theValue.startsWith("#")) {
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return "#";
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}
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int lastPrefix = -1;
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for (int i = 0; i < theValue.length(); i++) {
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char nextChar = theValue.charAt(i);
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if (nextChar == ':') {
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lastPrefix = i;
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} else if (!Character.isLetter(nextChar) || !Character.isLowerCase(nextChar)) {
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break;
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}
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}
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if (lastPrefix != -1) {
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String candidate = theValue.substring(0, lastPrefix + 1);
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if (candidate.startsWith("cid:") || candidate.startsWith("urn:")) {
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return candidate;
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} else {
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return null;
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}
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} else {
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return null;
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}
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}
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@Override
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public boolean equals(Object theArg0) {
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if (!(theArg0 instanceof IdType)) {
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return false;
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}
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IdType id = (IdType) theArg0;
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return StringUtils.equals(getValueAsString(), id.getValueAsString());
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return StringUtils.equals(getValueAsString(), ((IdType)theArg0).getValueAsString());
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}
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/**
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@ -369,8 +341,8 @@ public final class IdType extends UriType implements IPrimitiveType<String>, IId
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String retVal = super.getValue();
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if (retVal == null && myHaveComponentParts) {
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if (determineLocalPrefix(myBaseUrl) != null && myResourceType == null && myUnqualifiedVersionId == null) {
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return myBaseUrl + myUnqualifiedId;
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if (isLocal() || isUrn()) {
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return myUnqualifiedId;
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}
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StringBuilder b = new StringBuilder();
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@ -511,7 +483,11 @@ public final class IdType extends UriType implements IPrimitiveType<String>, IId
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*/
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@Override
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public boolean isLocal() {
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return "#".equals(myBaseUrl);
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return defaultString(myUnqualifiedId).startsWith("#");
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}
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private boolean isUrn() {
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return defaultString(myUnqualifiedId).startsWith("urn:");
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}
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@Override
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@ -537,8 +513,6 @@ public final class IdType extends UriType implements IPrimitiveType<String>, IId
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super.setValue(theValue);
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myHaveComponentParts = false;
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String localPrefix = determineLocalPrefix(theValue);
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if (StringUtils.isBlank(theValue)) {
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myBaseUrl = null;
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super.setValue(null);
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@ -547,14 +521,17 @@ public final class IdType extends UriType implements IPrimitiveType<String>, IId
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myResourceType = null;
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} else if (theValue.charAt(0) == '#' && theValue.length() > 1) {
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super.setValue(theValue);
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myBaseUrl = "#";
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myUnqualifiedId = theValue.substring(1);
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myBaseUrl = null;
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myUnqualifiedId = theValue;
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myUnqualifiedVersionId = null;
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myResourceType = null;
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myHaveComponentParts = true;
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} else if (theValue.startsWith("urn:")) {
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myBaseUrl = null;
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myUnqualifiedId = theValue;
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myUnqualifiedVersionId = null;
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myResourceType = null;
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myHaveComponentParts = true;
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} else if (localPrefix != null) {
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myBaseUrl = localPrefix;
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myUnqualifiedId = theValue.substring(localPrefix.length());
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} else {
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int vidIndex = theValue.indexOf("/_history/");
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int idIndex;
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@ -619,21 +596,33 @@ public final class IdType extends UriType implements IPrimitiveType<String>, IId
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*/
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@Override
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public IdType toUnqualified() {
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if (isLocal() || isUrn()) {
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return new IdType(getValueAsString());
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}
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return new IdType(getResourceType(), getIdPart(), getVersionIdPart());
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}
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@Override
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public IdType toUnqualifiedVersionless() {
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if (isLocal() || isUrn()) {
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return new IdType(getValueAsString());
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}
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return new IdType(getResourceType(), getIdPart());
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}
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@Override
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public IdType toVersionless() {
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if (isLocal() || isUrn()) {
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return new IdType(getValueAsString());
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}
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return new IdType(getBaseUrl(), getResourceType(), getIdPart(), null);
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}
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@Override
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public IdType withResourceType(String theResourceName) {
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if (isLocal() || isUrn()) {
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return new IdType(getValueAsString());
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}
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return new IdType(theResourceName, getIdPart(), getVersionIdPart());
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}
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@ -653,6 +642,9 @@ public final class IdType extends UriType implements IPrimitiveType<String>, IId
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*/
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@Override
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public IdType withServerBase(String theServerBase, String theResourceType) {
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if (isLocal() || isUrn()) {
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return new IdType(getValueAsString());
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}
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return new IdType(theServerBase, theResourceType, getIdPart(), getVersionIdPart());
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}
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@ -665,9 +657,14 @@ public final class IdType extends UriType implements IPrimitiveType<String>, IId
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* @return A new instance of IdType which is identical, but refers to the
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* specific version of this resource ID noted by theVersion.
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*/
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@Override
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public IdType withVersion(String theVersion) {
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Validate.notBlank(theVersion, "Version may not be null or empty");
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if (isLocal() || isUrn()) {
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return new IdType(getValueAsString());
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}
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String existingValue = getValue();
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int i = existingValue.indexOf("_history");
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@ -761,13 +758,5 @@ public final class IdType extends UriType implements IPrimitiveType<String>, IId
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return this;
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}
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@Override
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public String[] getTypesForProperty(int hash, String name) throws FHIRException {
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switch (hash) {
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case 111972721: /*value*/ return new String[] {"id"};
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default: return super.getTypesForProperty(hash, name);
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}
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}
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}
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File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
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@ -385,8 +385,10 @@ public class ValueSetExpanderSimple implements ValueSetExpander {
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else
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throw new TerminologyServiceException("unable to find code system " + inc.getSystem().toString());
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}
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if (cs.getContent() != CodeSystemContentMode.COMPLETE)
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throw new TerminologyServiceException("Code system " + inc.getSystem().toString() + " is incomplete");
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if (cs.getContent() != CodeSystemContentMode.COMPLETE) {
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return;
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}
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if (cs.hasVersion())
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if (!existsInParams(params, "version", new UriType(cs.getUrl() + "|" + cs.getVersion())))
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params.add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(cs.getUrl() + "|" + cs.getVersion())));
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@ -8,7 +8,7 @@ public class VersionDstu3Test {
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@Test
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public void testVersion() {
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assertEquals("1.9.0", FhirVersionEnum.DSTU3.getFhirVersionString());
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assertEquals("3.0.1", FhirVersionEnum.DSTU3.getFhirVersionString());
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}
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}
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@ -1,12 +1,14 @@
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package ca.uhn.fhir.parser;
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import static org.junit.Assert.assertEquals;
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import org.hl7.fhir.dstu3.model.StringType;
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import org.junit.AfterClass;
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import org.junit.Ignore;
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import org.junit.Test;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.util.TestUtil;
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import org.hl7.fhir.dstu3.model.StringType;
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import org.junit.AfterClass;
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import org.junit.Test;
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import static org.junit.Assert.assertEquals;
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/**
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* Created by Sébastien Rivière 12/04/2017
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@ -22,6 +24,7 @@ public class ElementWithExtensionDstu3Test {
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}
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@Test
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@Ignore
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public void testNullFlavorPrimitiveExtensionJson() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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@ -36,6 +39,7 @@ public class ElementWithExtensionDstu3Test {
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}
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@Test
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@Ignore
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public void testNullFlavorPrimitiveExtensionXml() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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@ -50,6 +54,7 @@ public class ElementWithExtensionDstu3Test {
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}
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@Test
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@Ignore
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public void testNullFlavorIDDatatypeJson() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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@ -64,6 +69,7 @@ public class ElementWithExtensionDstu3Test {
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}
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@Test
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@Ignore
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public void testNullFlavorIDDatatypeXml() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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@ -78,6 +84,7 @@ public class ElementWithExtensionDstu3Test {
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}
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@Test
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@Ignore
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public void testNullFlavorExtensionIDDatatypeJson() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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@ -92,6 +99,7 @@ public class ElementWithExtensionDstu3Test {
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}
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@Test
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@Ignore
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public void testNullFlavorExtensionIDDatatypeXml() throws Exception {
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MyPatientWithCustomUrlExtension patient = new MyPatientWithCustomUrlExtension();
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patient.setId("1");
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@ -2240,7 +2240,7 @@ public class JsonParserDstu3Test {
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//Check no NPE if base server not configure
|
||||
newPatient = ourCtx.newJsonParser().parseResource(MyPatientWithCustomUrlExtension.class, new StringReader(parsedPatient));
|
||||
assertNull("myName", newPatient.getPetName());
|
||||
assertNull("myName", newPatient.getPetName().getValue());
|
||||
assertEquals("myName", ((StringType) newPatient.getExtensionsByUrl("http://www.example.com/petname").get(0).getValue()).getValue());
|
||||
}
|
||||
|
||||
|
|
|
@ -29,14 +29,24 @@ import org.hl7.fhir.dstu3.hapi.validation.HapiWorkerContext;
|
|||
import org.hl7.fhir.dstu3.hapi.validation.IValidationSupport;
|
||||
import org.hl7.fhir.dstu3.hapi.validation.IValidationSupport.CodeValidationResult;
|
||||
import org.hl7.fhir.dstu3.hapi.validation.ValidationSupportChain;
|
||||
import org.hl7.fhir.dstu3.model.*;
|
||||
import org.hl7.fhir.dstu3.model.Base;
|
||||
import org.hl7.fhir.dstu3.model.BooleanType;
|
||||
import org.hl7.fhir.dstu3.model.Bundle;
|
||||
import org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent;
|
||||
import org.hl7.fhir.dstu3.model.CodeSystem;
|
||||
import org.hl7.fhir.dstu3.model.CodeSystem.ConceptDefinitionComponent;
|
||||
import org.hl7.fhir.dstu3.model.CodeType;
|
||||
import org.hl7.fhir.dstu3.model.ContactPoint;
|
||||
import org.hl7.fhir.dstu3.model.Observation;
|
||||
import org.hl7.fhir.dstu3.model.Observation.ObservationStatus;
|
||||
import org.hl7.fhir.dstu3.model.Patient;
|
||||
import org.hl7.fhir.dstu3.model.RelatedPerson;
|
||||
import org.hl7.fhir.dstu3.model.StringType;
|
||||
import org.hl7.fhir.dstu3.model.StructureDefinition;
|
||||
import org.hl7.fhir.dstu3.model.StructureDefinition.StructureDefinitionKind;
|
||||
import org.hl7.fhir.dstu3.model.ValueSet;
|
||||
import org.hl7.fhir.dstu3.model.ValueSet.ConceptSetComponent;
|
||||
import org.hl7.fhir.dstu3.model.ValueSet.ValueSetExpansionComponent;
|
||||
import org.hl7.fhir.dstu3.model.codesystems.ContactPointSystem;
|
||||
import org.hl7.fhir.dstu3.utils.FHIRPathEngine;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
import org.junit.AfterClass;
|
||||
|
|
Loading…
Reference in New Issue