Merge branch 'master' of github.com:jamesagnew/hapi-fhir
This commit is contained in:
commit
9ef0498775
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@ -16,6 +16,7 @@ nohup.out
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tmp.txt
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*.hprof
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tmp.txt
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ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamString/
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# Vagrant stuff.
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.vagrant
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|
|
|
@ -2,6 +2,8 @@ package ca.uhn.fhir.model.api;
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import org.apache.commons.lang3.builder.ToStringBuilder;
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import ch.qos.logback.core.db.dialect.MySQLDialect;
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/*
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* #%L
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* HAPI FHIR - Core Library
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@ -34,7 +36,7 @@ public class Include {
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private boolean myRecurse;
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private String myValue;
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private boolean myImmutable;
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private final boolean myImmutable;
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/**
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* Constructor for <b>non-recursive</b> include
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@ -44,10 +46,11 @@ public class Include {
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*/
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public Include(String theValue) {
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myValue = theValue;
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myImmutable = false;
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}
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/**
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* Constructor for <b>non-recursive</b> include
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* Constructor for an include
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*
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* @param theValue
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* The <code>_include</code> value, e.g. "Patient:name"
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@ -57,6 +60,21 @@ public class Include {
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public Include(String theValue, boolean theRecurse) {
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myValue = theValue;
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myRecurse = theRecurse;
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myImmutable = false;
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}
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/**
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* Constructor for an include
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*
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* @param theValue
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* The <code>_include</code> value, e.g. "Patient:name"
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* @param theRecurse
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* Should the include recurse
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*/
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public Include(String theValue, boolean theRecurse, boolean theImmutable) {
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myValue = theValue;
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myRecurse = theRecurse;
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myImmutable = theImmutable;
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||||
}
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|
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/**
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@ -132,9 +150,18 @@ public class Include {
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myValue = theValue;
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}
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/**
|
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* Is this object {@link #toLocked() locked}?
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*/
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public boolean isLocked() {
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return myImmutable;
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||||
}
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||||
|
||||
/**
|
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* Return a new
|
||||
*/
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public Include toLocked() {
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Include retVal = new Include(myValue, myRecurse);
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||||
retVal.myImmutable = true;
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Include retVal = new Include(myValue, myRecurse, true);
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return retVal;
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}
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@ -145,4 +172,36 @@ public class Include {
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builder.append("recurse", myRecurse);
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return builder.toString();
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}
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|
||||
/**
|
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* Creates and returns a new copy of this Include with the given type. The
|
||||
* following table shows what will be returned:
|
||||
* <table>
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* <tr><th>Initial Contents</th><th>theResourceType</th><th>Output</th></tr>
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* <tr><td>Patient:careProvider</th><th>Organization</th><th>Patient:careProvider:Organization</th></tr>
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* <tr><td>Patient:careProvider:Practitioner</th><th>Organization</th><th>Patient:careProvider:Organization</th></tr>
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* <tr><td>Patient</th><th>(any)</th><th>{@link IllegalStateException}</th></tr>
|
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* </table>
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*
|
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* @param theResourceType The resource type (e.g. "Organization")
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||||
* @return A new copy of the include. Note that if this include is {@link #toLocked() locked}, the returned include will be too
|
||||
*/
|
||||
public Include withType(String theResourceType) {
|
||||
StringBuilder b = new StringBuilder();
|
||||
b.append(myValue);
|
||||
int firstColon = myValue.indexOf(':');
|
||||
if (firstColon == -1 || firstColon == b.length() - 1) {
|
||||
throw new IllegalStateException("This include does not contain a value in the format [ResourceType]:[paramName]");
|
||||
}
|
||||
int secondColon = myValue.indexOf(':', firstColon + 1);
|
||||
if (secondColon != -1) {
|
||||
b.delete(secondColon, b.length());
|
||||
}
|
||||
|
||||
b.append(":");
|
||||
b.append(theResourceType);
|
||||
Include retVal = new Include(b.toString(), myRecurse, myImmutable);
|
||||
return retVal;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -1322,7 +1322,7 @@ public class SearchBuilder {
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|||
*
|
||||
* @param theLastUpdated
|
||||
*/
|
||||
private HashSet<Long> loadReverseIncludes(Collection<Long> theMatches, Set<Include> theRevIncludes, boolean theReverseMode, EverythingModeEnum theEverythingModeEnum, DateRangeParam theLastUpdated) {
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||||
private HashSet<Long> loadReverseIncludes(Collection<Long> theMatches, Set<Include> theRevIncludes, boolean theReverseMode, DateRangeParam theLastUpdated) {
|
||||
if (theMatches.size() == 0) {
|
||||
return new HashSet<Long>();
|
||||
}
|
||||
|
@ -1595,7 +1595,7 @@ public class SearchBuilder {
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|||
final Set<Long> revIncludedPids;
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if (theParams.getEverythingMode() == null) {
|
||||
if (theParams.getRevIncludes() != null && theParams.getRevIncludes().isEmpty() == false) {
|
||||
revIncludedPids = loadReverseIncludes(pids, theParams.getRevIncludes(), true, null, lu);
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||||
revIncludedPids = loadReverseIncludes(pids, theParams.getRevIncludes(), true, lu);
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||||
} else {
|
||||
revIncludedPids = new HashSet<Long>();
|
||||
}
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||||
|
@ -1623,7 +1623,7 @@ public class SearchBuilder {
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|||
|
||||
// Load includes
|
||||
pidsSubList = new ArrayList<Long>(pidsSubList);
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||||
revIncludedPids.addAll(loadReverseIncludes(pidsSubList, theParams.getIncludes(), false, null, theParams.getLastUpdated()));
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||||
revIncludedPids.addAll(loadReverseIncludes(pidsSubList, theParams.getIncludes(), false, theParams.getLastUpdated()));
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// Execute the query and make sure we return distinct results
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List<IBaseResource> resources = new ArrayList<IBaseResource>();
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||||
|
|
|
@ -4,7 +4,9 @@ import static org.hamcrest.Matchers.contains;
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import static org.hamcrest.Matchers.containsInAnyOrder;
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||||
import static org.hamcrest.Matchers.empty;
|
||||
import static org.hamcrest.Matchers.not;
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||||
import static org.junit.Assert.*;
|
||||
import static org.junit.Assert.assertEquals;
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||||
import static org.junit.Assert.assertNotEquals;
|
||||
import static org.junit.Assert.assertThat;
|
||||
import static org.mockito.Mockito.mock;
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|
||||
import java.util.List;
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|
@ -14,9 +16,8 @@ import javax.servlet.http.HttpServletRequest;
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import org.hl7.fhir.instance.model.api.IIdType;
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import org.junit.Test;
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||||
import ca.uhn.fhir.jpa.dao.FhirSearchDao;
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||||
import ca.uhn.fhir.jpa.dao.SearchParameterMap;
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||||
import ca.uhn.fhir.jpa.dao.FhirSearchDao.Suggestion;
|
||||
import ca.uhn.fhir.jpa.dao.SearchParameterMap;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Device;
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||||
import ca.uhn.fhir.model.dstu2.resource.Media;
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||||
import ca.uhn.fhir.model.dstu2.resource.Observation;
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||||
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|
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@ -1430,25 +1430,36 @@ public class FhirResourceDaoDstu2SearchNoFtTest extends BaseJpaDstu2Test {
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{
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Organization org = new Organization();
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||||
org.getNameElement().setValue(methodName + "_O1Parent");
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||||
parentOrgId = myOrganizationDao.create(org).getId();
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||||
parentOrgId = myOrganizationDao.create(org).getId().toUnqualifiedVersionless();
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||||
}
|
||||
IIdType orgId;
|
||||
IIdType patientId;
|
||||
{
|
||||
Organization org = new Organization();
|
||||
org.getNameElement().setValue(methodName + "_O1");
|
||||
org.setPartOf(new ResourceReferenceDt(parentOrgId));
|
||||
IIdType orgId = myOrganizationDao.create(org).getId();
|
||||
orgId = myOrganizationDao.create(org).getId().toUnqualifiedVersionless();
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.addIdentifier().setSystem("urn:system").setValue("001");
|
||||
patient.addName().addFamily("Tester_" + methodName + "_P1").addGiven("Joe");
|
||||
patient.getManagingOrganization().setReference(orgId);
|
||||
myPatientDao.create(patient);
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patient.addCareProvider().setReference(orgId);
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||||
patientId = myPatientDao.create(patient).getId().toUnqualifiedVersionless();
|
||||
}
|
||||
IIdType practId2;
|
||||
{
|
||||
Practitioner pract = new Practitioner();
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pract.getName().addFamily(methodName + "_PRACT1");
|
||||
practId2 = myPractitionerDao.create(pract).getId().toUnqualifiedVersionless();
|
||||
}
|
||||
IIdType patientId2;
|
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{
|
||||
Patient patient = new Patient();
|
||||
patient.addIdentifier().setSystem("urn:system").setValue("002");
|
||||
patient.addName().addFamily("Tester_" + methodName + "_P2").addGiven("John");
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myPatientDao.create(patient);
|
||||
patient.addCareProvider().setReference(practId2);
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||||
patientId2 = myPatientDao.create(patient).getId().toUnqualifiedVersionless();
|
||||
}
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||||
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||||
{
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||||
|
@ -1527,6 +1538,20 @@ public class FhirResourceDaoDstu2SearchNoFtTest extends BaseJpaDstu2Test {
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assertEquals(1, patients.size());
|
||||
assertEquals(Patient.class, patients.get(0).getClass());
|
||||
}
|
||||
{
|
||||
// Untyped include
|
||||
SearchParameterMap params = new SearchParameterMap();
|
||||
params.addInclude(Patient.INCLUDE_CAREPROVIDER);
|
||||
List<IIdType> ids = toUnqualifiedVersionlessIds(myPatientDao.search(params));
|
||||
assertThat(ids, containsInAnyOrder(orgId, patientId, patientId2, practId2));
|
||||
}
|
||||
{
|
||||
// // Typed include
|
||||
// SearchParameterMap params = new SearchParameterMap();
|
||||
// params.addInclude(Patient.INCLUDE_CAREPROVIDER.withType("Practitioner"));
|
||||
// List<IIdType> ids = toUnqualifiedVersionlessIds(myPatientDao.search(params));
|
||||
// assertThat(ids, containsInAnyOrder(patientId, patientId2, practId2));
|
||||
}
|
||||
}
|
||||
|
||||
@SuppressWarnings("unused")
|
||||
|
|
|
@ -1,7 +1,10 @@
|
|||
package ca.uhn.fhir.rest.server;
|
||||
|
||||
import static org.hamcrest.Matchers.*;
|
||||
import static org.junit.Assert.*;
|
||||
import static org.hamcrest.Matchers.containsInAnyOrder;
|
||||
import static org.hamcrest.Matchers.containsString;
|
||||
import static org.junit.Assert.assertEquals;
|
||||
import static org.junit.Assert.assertThat;
|
||||
import static org.junit.Assert.fail;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
|
@ -51,56 +54,21 @@ import ca.uhn.fhir.util.PortUtil;
|
|||
public class IncludeTest {
|
||||
|
||||
private static CloseableHttpClient ourClient;
|
||||
private static FhirContext ourCtx;
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(IncludeTest.class);
|
||||
private static int ourPort;
|
||||
private static Server ourServer;
|
||||
private static FhirContext ourCtx;
|
||||
|
||||
@Test
|
||||
public void testNoIncludes() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(1, bundle.size());
|
||||
|
||||
Patient p = bundle.getResources(Patient.class).get(0);
|
||||
assertEquals(0, p.getName().size());
|
||||
assertEquals("Hello", p.getId().getIdPart());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testOneInclude() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(1, bundle.size());
|
||||
|
||||
Patient p = bundle.getResources(Patient.class).get(0);
|
||||
assertEquals(1, p.getName().size());
|
||||
assertEquals("Hello", p.getId().getIdPart());
|
||||
assertEquals("foo", p.getName().get(0).getFamilyFirstRep().getValue());
|
||||
}
|
||||
|
||||
// @Test
|
||||
public void testMixedContainedAndNonContained() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/DiagnosticReport?_query=stitchedInclude&_pretty=true");
|
||||
public void testBadInclude() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_include=baz");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
assertEquals(400, status.getStatusLine().getStatusCode());
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
ourLog.info(responseContent);
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(4, bundle.size());
|
||||
assertThat(responseContent, containsString("Invalid _include parameter value"));
|
||||
}
|
||||
|
||||
@Test
|
||||
|
@ -128,6 +96,32 @@ public class IncludeTest {
|
|||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testIIncludedResourcesNonContainedInDeclaredExtension() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=declaredExtInclude&_pretty=true");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
|
||||
ourLog.info(responseContent);
|
||||
|
||||
assertEquals(4, bundle.size());
|
||||
assertEquals(new IdDt("Patient/p1"), bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Patient/p2"), bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Organization/o1"), bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Organization/o2"), bundle.toListOfResources().get(3).getId().toUnqualifiedVersionless());
|
||||
|
||||
Patient p1 = (Patient) bundle.toListOfResources().get(0);
|
||||
assertEquals(0, p1.getContained().getContainedResources().size());
|
||||
|
||||
Patient p2 = (Patient) bundle.toListOfResources().get(1);
|
||||
assertEquals(0, p2.getContained().getContainedResources().size());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testIIncludedResourcesNonContainedInExtension() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=extInclude&_pretty=true");
|
||||
|
@ -179,29 +173,79 @@ public class IncludeTest {
|
|||
}
|
||||
|
||||
@Test
|
||||
public void testIIncludedResourcesNonContainedInDeclaredExtension() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=declaredExtInclude&_pretty=true");
|
||||
public void testIncludeWithType() {
|
||||
assertEquals("Patient:careProvider:Practitioner", new Include("Patient:careProvider", true).withType("Practitioner").getValue());
|
||||
assertEquals(true, new Include("Patient:careProvider", true).withType("Practitioner").isRecurse());
|
||||
assertEquals(false, new Include("Patient:careProvider:Organization", true).withType("Practitioner").isLocked());
|
||||
|
||||
assertEquals("Patient:careProvider:Practitioner", new Include("Patient:careProvider:Organization", true).withType("Practitioner").getValue());
|
||||
assertEquals(true, new Include("Patient:careProvider:Organization", true).toLocked().withType("Practitioner").isLocked());
|
||||
|
||||
try {
|
||||
new Include("").withType("Patient");
|
||||
fail();
|
||||
} catch (IllegalStateException e) {
|
||||
// good
|
||||
}
|
||||
try {
|
||||
new Include("Patient").withType("Patient");
|
||||
fail();
|
||||
} catch (IllegalStateException e) {
|
||||
// good
|
||||
}
|
||||
try {
|
||||
new Include("Patient:").withType("Patient");
|
||||
fail();
|
||||
} catch (IllegalStateException e) {
|
||||
// good
|
||||
}
|
||||
}
|
||||
|
||||
// @Test
|
||||
public void testMixedContainedAndNonContained() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/DiagnosticReport?_query=stitchedInclude&_pretty=true");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
ourLog.info(responseContent);
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(4, bundle.size());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testNoIncludes() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(1, bundle.size());
|
||||
|
||||
ourLog.info(responseContent);
|
||||
Patient p = bundle.getResources(Patient.class).get(0);
|
||||
assertEquals(0, p.getName().size());
|
||||
assertEquals("Hello", p.getId().getIdPart());
|
||||
}
|
||||
|
||||
assertEquals(4, bundle.size());
|
||||
assertEquals(new IdDt("Patient/p1"), bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Patient/p2"), bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Organization/o1"), bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Organization/o2"), bundle.toListOfResources().get(3).getId().toUnqualifiedVersionless());
|
||||
@Test
|
||||
public void testOneInclude() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
Patient p1 = (Patient) bundle.toListOfResources().get(0);
|
||||
assertEquals(0, p1.getContained().getContainedResources().size());
|
||||
|
||||
Patient p2 = (Patient) bundle.toListOfResources().get(1);
|
||||
assertEquals(0, p2.getContained().getContainedResources().size());
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(1, bundle.size());
|
||||
|
||||
Patient p = bundle.getResources(Patient.class).get(0);
|
||||
assertEquals(1, p.getName().size());
|
||||
assertEquals("Hello", p.getId().getIdPart());
|
||||
assertEquals("foo", p.getName().get(0).getFamilyFirstRep().getValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
|
@ -226,18 +270,6 @@ public class IncludeTest {
|
|||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testBadInclude() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_include=baz");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
assertEquals(400, status.getStatusLine().getStatusCode());
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
ourLog.info(responseContent);
|
||||
assertThat(responseContent, containsString("Invalid _include parameter value"));
|
||||
}
|
||||
|
||||
@AfterClass
|
||||
public static void afterClass() throws Exception {
|
||||
ourServer.stop();
|
||||
|
@ -268,27 +300,20 @@ public class IncludeTest {
|
|||
|
||||
}
|
||||
|
||||
@ResourceDef(name = "Patient")
|
||||
public static class ExtPatient extends Patient {
|
||||
@Child(name = "secondOrg")
|
||||
@Extension(url = "http://foo#secondOrg", definedLocally = false, isModifier = false)
|
||||
private ResourceReferenceDt mySecondOrg;
|
||||
public static void main(String[] args) {
|
||||
|
||||
@Override
|
||||
public boolean isEmpty() {
|
||||
return super.isEmpty() && ElementUtil.isEmpty(mySecondOrg);
|
||||
}
|
||||
Organization org = new Organization();
|
||||
org.setId("Organization/65546");
|
||||
org.getName().setValue("Contained Test Organization");
|
||||
|
||||
public ResourceReferenceDt getSecondOrg() {
|
||||
if (mySecondOrg == null) {
|
||||
mySecondOrg = new ResourceReferenceDt();
|
||||
}
|
||||
return mySecondOrg;
|
||||
}
|
||||
Patient patient = new Patient();
|
||||
patient.setId("Patient/1333");
|
||||
patient.addIdentifier("urn:mrns", "253345");
|
||||
patient.getManagingOrganization().setResource(patient);
|
||||
|
||||
public void setSecondOrg(ResourceReferenceDt theSecondOrg) {
|
||||
mySecondOrg = theSecondOrg;
|
||||
}
|
||||
System.out.println(FhirContext.forDstu1().newXmlParser().setPrettyPrint(true).encodeResourceToString(patient));
|
||||
|
||||
patient.getManagingOrganization().getReference();
|
||||
|
||||
}
|
||||
|
||||
|
@ -345,11 +370,10 @@ public class IncludeTest {
|
|||
*/
|
||||
public static class DummyPatientResourceProvider implements IResourceProvider {
|
||||
|
||||
@Search(queryName = "normalInclude")
|
||||
public List<Patient> normalInclude() {
|
||||
@Search(queryName = "containedInclude")
|
||||
public List<Patient> containedInclude() {
|
||||
Organization o1 = new Organization();
|
||||
o1.getName().setValue("o1");
|
||||
o1.setId("o1");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.setId("p1");
|
||||
|
@ -364,25 +388,6 @@ public class IncludeTest {
|
|||
return Arrays.asList(p1, p2);
|
||||
}
|
||||
|
||||
@Search(queryName = "extInclude")
|
||||
public List<Patient> extInclude() {
|
||||
Organization o1 = new Organization();
|
||||
o1.getName().setValue("o1");
|
||||
o1.setId("o1");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.setId("p1");
|
||||
p1.addIdentifier().setLabel("p1");
|
||||
p1.addUndeclaredExtension(false, "http://foo", new ResourceReferenceDt(o1));
|
||||
|
||||
Patient p2 = new Patient();
|
||||
p2.setId("p2");
|
||||
p2.addIdentifier().setLabel("p2");
|
||||
p2.addUndeclaredExtension(false, "http://foo", new ResourceReferenceDt(o1));
|
||||
|
||||
return Arrays.asList(p1, p2);
|
||||
}
|
||||
|
||||
@Search(queryName = "declaredExtInclude")
|
||||
public List<ExtPatient> declaredExtInclude() {
|
||||
Organization o1 = new Organization();
|
||||
|
@ -407,20 +412,21 @@ public class IncludeTest {
|
|||
return Arrays.asList(p1, p2);
|
||||
}
|
||||
|
||||
@Search(queryName = "containedInclude")
|
||||
public List<Patient> containedInclude() {
|
||||
@Search(queryName = "extInclude")
|
||||
public List<Patient> extInclude() {
|
||||
Organization o1 = new Organization();
|
||||
o1.getName().setValue("o1");
|
||||
o1.setId("o1");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.setId("p1");
|
||||
p1.addIdentifier().setLabel("p1");
|
||||
p1.getManagingOrganization().setResource(o1);
|
||||
p1.addUndeclaredExtension(false, "http://foo", new ResourceReferenceDt(o1));
|
||||
|
||||
Patient p2 = new Patient();
|
||||
p2.setId("p2");
|
||||
p2.addIdentifier().setLabel("p2");
|
||||
p2.getManagingOrganization().setResource(o1);
|
||||
p2.addUndeclaredExtension(false, "http://foo", new ResourceReferenceDt(o1));
|
||||
|
||||
return Arrays.asList(p1, p2);
|
||||
}
|
||||
|
@ -449,22 +455,48 @@ public class IncludeTest {
|
|||
return Patient.class;
|
||||
}
|
||||
|
||||
@Search(queryName = "normalInclude")
|
||||
public List<Patient> normalInclude() {
|
||||
Organization o1 = new Organization();
|
||||
o1.getName().setValue("o1");
|
||||
o1.setId("o1");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.setId("p1");
|
||||
p1.addIdentifier().setLabel("p1");
|
||||
p1.getManagingOrganization().setResource(o1);
|
||||
|
||||
Patient p2 = new Patient();
|
||||
p2.setId("p2");
|
||||
p2.addIdentifier().setLabel("p2");
|
||||
p2.getManagingOrganization().setResource(o1);
|
||||
|
||||
return Arrays.asList(p1, p2);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
public static void main(String[] args) {
|
||||
@ResourceDef(name = "Patient")
|
||||
public static class ExtPatient extends Patient {
|
||||
@Child(name = "secondOrg")
|
||||
@Extension(url = "http://foo#secondOrg", definedLocally = false, isModifier = false)
|
||||
private ResourceReferenceDt mySecondOrg;
|
||||
|
||||
Organization org = new Organization();
|
||||
org.setId("Organization/65546");
|
||||
org.getName().setValue("Contained Test Organization");
|
||||
public ResourceReferenceDt getSecondOrg() {
|
||||
if (mySecondOrg == null) {
|
||||
mySecondOrg = new ResourceReferenceDt();
|
||||
}
|
||||
return mySecondOrg;
|
||||
}
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.setId("Patient/1333");
|
||||
patient.addIdentifier("urn:mrns", "253345");
|
||||
patient.getManagingOrganization().setResource(patient);
|
||||
@Override
|
||||
public boolean isEmpty() {
|
||||
return super.isEmpty() && ElementUtil.isEmpty(mySecondOrg);
|
||||
}
|
||||
|
||||
System.out.println(FhirContext.forDstu1().newXmlParser().setPrettyPrint(true).encodeResourceToString(patient));
|
||||
|
||||
patient.getManagingOrganization().getReference();
|
||||
public void setSecondOrg(ResourceReferenceDt theSecondOrg) {
|
||||
mySecondOrg = theSecondOrg;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
|
30
pom.xml
30
pom.xml
|
@ -240,7 +240,7 @@
|
|||
<jetty_version>9.2.14.v20151106</jetty_version>
|
||||
<!-- Note on Hibernate versions: Hibernate 4.3+ uses JPA 2.1, which is too new for a number of platforms including JBoss EAP 6.x and Glassfish 3.0. Upgrade this version with caution! Also note that if
|
||||
you change this, you may get a failure in hibernate4-maven-plugin. See the note in hapi-fhir-jpaserver-base/pom.xml's configuration for that plugin... -->
|
||||
<hibernate_version>5.0.3.Final</hibernate_version>
|
||||
<hibernate_version>5.0.5.Final</hibernate_version>
|
||||
<hibernate_validator_version>5.2.2.Final</hibernate_validator_version>
|
||||
<maven_assembly_plugin_version>2.5.3</maven_assembly_plugin_version>
|
||||
<maven_failsafe_plugin_version>2.18.1</maven_failsafe_plugin_version>
|
||||
|
@ -251,7 +251,7 @@
|
|||
<mitreid-connect-version>1.1.8</mitreid-connect-version>
|
||||
<phloc_schematron_version>2.7.1</phloc_schematron_version>
|
||||
<phloc_commons_version>4.3.6</phloc_commons_version>
|
||||
<spring_version>4.2.2.RELEASE</spring_version>
|
||||
<spring_version>4.2.3.RELEASE</spring_version>
|
||||
<thymeleaf-version>2.1.4.RELEASE</thymeleaf-version>
|
||||
<ebay_cors_filter_version>1.0.1</ebay_cors_filter_version>
|
||||
<xmlunit_version>1.6</xmlunit_version>
|
||||
|
@ -277,7 +277,7 @@
|
|||
<dependency>
|
||||
<groupId>com.google.guava</groupId>
|
||||
<artifactId>guava</artifactId>
|
||||
<version>18.0</version>
|
||||
<version>19.0</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>com.phloc</groupId>
|
||||
|
@ -392,12 +392,12 @@
|
|||
<dependency>
|
||||
<groupId>org.apache.lucene</groupId>
|
||||
<artifactId>lucene-highlighter</artifactId>
|
||||
<version>5.3.0</version>
|
||||
<version>5.3.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.lucene</groupId>
|
||||
<artifactId>lucene-analyzers-phonetic</artifactId>
|
||||
<version>5.3.0</version>
|
||||
<version>5.3.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven.doxia</groupId>
|
||||
|
@ -407,17 +407,17 @@
|
|||
<dependency>
|
||||
<groupId>org.apache.maven.scm</groupId>
|
||||
<artifactId>maven-scm-api</artifactId>
|
||||
<version>1.9</version>
|
||||
<version>1.9.4</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven.scm</groupId>
|
||||
<artifactId>maven-scm-manager-plexus</artifactId>
|
||||
<version>1.9</version>
|
||||
<version>1.9.4</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven.scm</groupId>
|
||||
<artifactId>maven-scm-provider-gitexe</artifactId>
|
||||
<version>1.9</version>
|
||||
<version>1.9.4</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven.wagon</groupId>
|
||||
|
@ -552,7 +552,7 @@
|
|||
<dependency>
|
||||
<groupId>org.hibernate</groupId>
|
||||
<artifactId>hibernate-search-orm</artifactId>
|
||||
<version>5.5.0.Final</version>
|
||||
<version>5.5.1.Final</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.javassist</groupId>
|
||||
|
@ -562,17 +562,17 @@
|
|||
<dependency>
|
||||
<groupId>org.slf4j</groupId>
|
||||
<artifactId>slf4j-android</artifactId>
|
||||
<version>1.7.12</version>
|
||||
<version>1.7.13</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.slf4j</groupId>
|
||||
<artifactId>slf4j-api</artifactId>
|
||||
<version>1.7.12</version>
|
||||
<version>1.7.13</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.slf4j</groupId>
|
||||
<artifactId>jcl-over-slf4j</artifactId>
|
||||
<version>1.7.12</version>
|
||||
<version>1.7.13</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.springframework</groupId>
|
||||
|
@ -663,7 +663,7 @@
|
|||
<plugin>
|
||||
<groupId>org.apache.felix</groupId>
|
||||
<artifactId>maven-bundle-plugin</artifactId>
|
||||
<version>3.0.0</version>
|
||||
<version>3.0.1</version>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
|
@ -931,12 +931,12 @@
|
|||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-checkstyle-plugin</artifactId>
|
||||
<version>2.15</version>
|
||||
<version>2.17</version>
|
||||
<dependencies>
|
||||
<dependency>
|
||||
<groupId>com.puppycrawl.tools</groupId>
|
||||
<artifactId>checkstyle</artifactId>
|
||||
<version>6.11.2</version>
|
||||
<version>6.13</version>
|
||||
</dependency>
|
||||
</dependencies>
|
||||
<configuration>
|
||||
|
|
|
@ -7,6 +7,16 @@
|
|||
</properties>
|
||||
<body>
|
||||
<release version="1.4" date="TBD">
|
||||
<action type="add">
|
||||
Bump the version of a few dependencies to the
|
||||
latest versions (dependent HAPI modules listed in brackets):
|
||||
<![CDATA[
|
||||
<ul>
|
||||
<li>Hibernate (JPA, Web Tester): 5.0.3 -> 5.0.5</li>
|
||||
<li>Springframework (JPA, Web Tester): 4.2.2 -> 4.2.3</li>
|
||||
</ul>
|
||||
]]>
|
||||
</action>
|
||||
<action type="fix">
|
||||
Remove a dependency on a Java 1.7 class
|
||||
(ReflectiveOperationException) in several spots in the
|
||||
|
|
Loading…
Reference in New Issue