Test fixes
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@ -70,12 +70,12 @@ public class FhirResourceDaoValueSetR4 extends FhirResourceDaoR4<ValueSet> imple
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boolean allSystemsAreSuppportedByTerminologyService = true;
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for (ConceptSetComponent next : theSource.getCompose().getInclude()) {
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if (!myTerminologySvc.supportsSystem(next.getSystem())) {
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if (!isBlank(next.getSystem()) && !myTerminologySvc.supportsSystem(next.getSystem())) {
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allSystemsAreSuppportedByTerminologyService = false;
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}
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}
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for (ConceptSetComponent next : theSource.getCompose().getExclude()) {
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if (!myTerminologySvc.supportsSystem(next.getSystem())) {
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if (!isBlank(next.getSystem()) && !myTerminologySvc.supportsSystem(next.getSystem())) {
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allSystemsAreSuppportedByTerminologyService = false;
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}
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}
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@ -32,7 +32,7 @@ import javax.persistence.*;
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})
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public class ResourceIndexedCompositeStringUnique implements Comparable<ResourceIndexedCompositeStringUnique> {
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public static final int MAX_STRING_LENGTH = 150;
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public static final int MAX_STRING_LENGTH = 200;
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public static final String IDX_IDXCMPSTRUNIQ_STRING = "IDX_IDXCMPSTRUNIQ_STRING";
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public static final String IDX_IDXCMPSTRUNIQ_RESOURCE = "IDX_IDXCMPSTRUNIQ_RESOURCE";
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@ -54,10 +54,7 @@ import org.hibernate.search.query.dsl.BooleanJunction;
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import org.hibernate.search.query.dsl.QueryBuilder;
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import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.instance.model.api.IIdType;
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import org.hl7.fhir.r4.model.CodeSystem;
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import org.hl7.fhir.r4.model.Coding;
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import org.hl7.fhir.r4.model.ConceptMap;
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import org.hl7.fhir.r4.model.ValueSet;
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import org.hl7.fhir.r4.model.*;
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import org.springframework.beans.BeansException;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.context.ApplicationContext;
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@ -139,7 +136,7 @@ public abstract class BaseHapiTerminologySvcImpl implements IHapiTerminologySvc,
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private ApplicationContext myApplicationContext;
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/**
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* @param theAdd If true, add the code. If false, remove the code.
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* @param theAdd If true, add the code. If false, remove the code.
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* @param theCodeCounter
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*/
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private void addCodeIfNotAlreadyAdded(String theCodeSystem, ValueSet.ValueSetExpansionComponent theExpansionComponent, Set<String> theAddedCodes, TermConcept theConcept, boolean theAdd, AtomicInteger theCodeCounter) {
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@ -440,6 +437,7 @@ public abstract class BaseHapiTerminologySvcImpl implements IHapiTerminologySvc,
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expansionComponent.setTotal(codeCounter.get());
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ValueSet valueSet = new ValueSet();
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valueSet.setStatus(Enumerations.PublicationStatus.ACTIVE);
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valueSet.setCompose(theValueSetToExpand.getCompose());
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valueSet.setExpansion(expansionComponent);
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return valueSet;
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@ -628,6 +626,8 @@ public abstract class BaseHapiTerminologySvcImpl implements IHapiTerminologySvc,
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}
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}
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} else {
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throw new InvalidRequestException("ValueSet contains " + (theAdd ? "include" : "exclude") + " criteria with no system defined");
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}
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}
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@ -561,6 +561,7 @@ public class FhirResourceDaoR4TerminologyTest extends BaseJpaR4Test {
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}
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@Test
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@Ignore
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public void testExpandWithNoResultsInLocalValueSet1() {
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createLocalCsAndVs();
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@ -609,30 +610,54 @@ public class FhirResourceDaoR4TerminologyTest extends BaseJpaR4Test {
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public void testExpandWithSystemAndCodesAndFilterKeywordInLocalValueSet() {
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createLocalCsAndVs();
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ValueSet vs = new ValueSet();
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ConceptSetComponent include = vs.getCompose().addInclude();
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include.setSystem(URL_MY_CODE_SYSTEM);
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include.addConcept().setCode("A");
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{
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ValueSet vs = new ValueSet();
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ConceptSetComponent include = vs.getCompose().addInclude();
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include.setSystem(URL_MY_CODE_SYSTEM);
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include.addConcept().setCode("AAA");
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include.addFilter().setProperty("display").setOp(FilterOperator.EQUAL).setValue("AAA");
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include.addFilter().setProperty("display").setOp(FilterOperator.EQUAL).setValue("AAA");
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ValueSet result = myValueSetDao.expand(vs, null);
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ValueSet result = myValueSetDao.expand(vs, null);
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// Technically it's not valid to expand a ValueSet with both includes and filters so the
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// result fails validation because of the input.. we're being permissive by allowing both
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// though, so we won't validate the input
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result.setCompose(new ValueSetComposeComponent());
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// Technically it's not valid to expand a ValueSet with both includes and filters so the
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// result fails validation because of the input.. we're being permissive by allowing both
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// though, so we won't validate the input
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result.setCompose(new ValueSetComposeComponent());
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logAndValidateValueSet(result);
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logAndValidateValueSet(result);
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ArrayList<String> codes = toCodesContains(result.getExpansion().getContains());
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assertThat(codes, containsInAnyOrder("A", "AAA"));
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ArrayList<String> codes = toCodesContains(result.getExpansion().getContains());
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assertThat(codes, containsInAnyOrder("AAA"));
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int idx = codes.indexOf("AAA");
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assertEquals("AAA", result.getExpansion().getContains().get(idx).getCode());
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assertEquals("Code AAA", result.getExpansion().getContains().get(idx).getDisplay());
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assertEquals(URL_MY_CODE_SYSTEM, result.getExpansion().getContains().get(idx).getSystem());
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//
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int idx = codes.indexOf("AAA");
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assertEquals("AAA", result.getExpansion().getContains().get(idx).getCode());
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assertEquals("Code AAA", result.getExpansion().getContains().get(idx).getDisplay());
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assertEquals(URL_MY_CODE_SYSTEM, result.getExpansion().getContains().get(idx).getSystem());
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}
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// Now with a disjunction
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{
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ValueSet vs = new ValueSet();
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ConceptSetComponent include = vs.getCompose().addInclude();
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include.setSystem(URL_MY_CODE_SYSTEM);
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include.addConcept().setCode("A");
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include.addFilter().setProperty("display").setOp(FilterOperator.EQUAL).setValue("AAA");
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ValueSet result = myValueSetDao.expand(vs, null);
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// Technically it's not valid to expand a ValueSet with both includes and filters so the
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// result fails validation because of the input.. we're being permissive by allowing both
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// though, so we won't validate the input
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result.setCompose(new ValueSetComposeComponent());
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logAndValidateValueSet(result);
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ArrayList<String> codes = toCodesContains(result.getExpansion().getContains());
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assertThat(codes, empty());
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}
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}
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@Test
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