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Work on term svc

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This commit is contained in:
James Agnew 2016-05-13 17:40:56 -04:00
parent c94f4bb19b
commit abd8bc2f14
12 changed files with 115 additions and 38 deletions
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3
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/method/RequestDetails.java
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@ -112,6 +112,9 @@ public abstract class RequestDetails {
}
public Map<String, String[]> getParameters() {
if (myParameters == null) {
return Collections.emptyMap();
}
return myParameters;
}

3
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/param/DateRangeParam.java
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@ -77,6 +77,9 @@ public class DateRangeParam implements IQueryParameterAnd<DateParam> {
setRangeFromDatesInclusive(theDateParam.getValueAsString(), theDateParam.getValueAsString());
} else {
switch (theDateParam.getPrefix()) {
case EQUAL:
setRangeFromDatesInclusive(theDateParam.getValueAsString(), theDateParam.getValueAsString());
break;
case STARTS_AFTER:
case GREATERTHAN:
case GREATERTHAN_OR_EQUALS:

8
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/interceptor/ResponseHighlighterInterceptor.java
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@ -27,6 +27,7 @@ import java.io.IOException;
import java.util.Arrays;
import java.util.Enumeration;
import java.util.List;
import java.util.Map;
import java.util.Set;
import javax.servlet.ServletException;
@ -249,7 +250,8 @@ private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger
private void streamResponse(RequestDetails theRequestDetails, HttpServletResponse theServletResponse, IBaseResource resource) {
IParser p;
if (theRequestDetails.getParameters().containsKey(Constants.PARAM_FORMAT)) {
Map<String, String[]> parameters = theRequestDetails.getParameters();
if (parameters.containsKey(Constants.PARAM_FORMAT)) {
p = RestfulServerUtils.getNewParser(theRequestDetails.getServer().getFhirContext(), theRequestDetails);
} else {
EncodingEnum defaultResponseEncoding = theRequestDetails.getServer().getDefaultResponseEncoding();
@ -263,11 +265,11 @@ private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger
theServletResponse.setContentType(Constants.CT_HTML_WITH_UTF8);
StringBuilder rawB = new StringBuilder();
for (String next : theRequestDetails.getParameters().keySet()) {
for (String next : parameters.keySet()) {
if (next.equals(PARAM_RAW)) {
continue;
}
for (String nextValue : theRequestDetails.getParameters().get(next)) {
for (String nextValue : parameters.get(next)) {
if (isBlank(nextValue)) {
continue;
}

3
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/TermCodeSystemVersion.java
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@ -27,6 +27,7 @@ import java.util.Collection;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.FetchType;
import javax.persistence.ForeignKey;
import javax.persistence.GeneratedValue;
import javax.persistence.GenerationType;
import javax.persistence.Id;
@ -56,7 +57,7 @@ public class TermCodeSystemVersion implements Serializable {
private Long myPid;
@OneToOne()
@JoinColumn(name = "RES_ID", referencedColumnName = "RES_ID", nullable = false, updatable = false)
@JoinColumn(name = "RES_ID", referencedColumnName = "RES_ID", nullable = false, updatable = false, foreignKey=@ForeignKey(name="FK_CODESYSVER_RES_ID"))
private ResourceTable myResource;
@Column(name = "RES_VERSION_ID", nullable = false, updatable = false)

10
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/BaseJpaTest.java
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@ -190,6 +190,16 @@ public class BaseJpaTest {
@Override
public Void doInTransaction(TransactionStatus theStatus) {
entityManager.createQuery("DELETE from " + TermConcept.class.getSimpleName() + " d").executeUpdate();
for (TermCodeSystem next : entityManager.createQuery("SELECT c FROM " + TermCodeSystem.class.getName() + " c", TermCodeSystem.class).getResultList()) {
next.setCurrentVersion(null);
entityManager.merge(next);
}
return null;
}
});
txTemplate.execute(new TransactionCallback<Void>() {
@Override
public Void doInTransaction(TransactionStatus theStatus) {
entityManager.createQuery("DELETE from " + TermCodeSystemVersion.class.getSimpleName() + " d").executeUpdate();
entityManager.createQuery("DELETE from " + TermCodeSystem.class.getSimpleName() + " d").executeUpdate();
return null;

16
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3SearchNoFtTest.java
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@ -116,6 +116,22 @@ public class FhirResourceDaoDstu3SearchNoFtTest extends BaseJpaDstu3Test {
map.add(Subscription.SP_STATUS, new TokenParam(null, SubscriptionStatus.ACTIVE.toCode()));
assertThat(toUnqualifiedVersionlessIds(mySubscriptionDao.search(map)), contains(id));
}
@Test
public void testDatePeriod() {
Encounter enc = new Encounter();
enc.getPeriod().setStartElement(new DateTimeType("2016-05-10")).setEndElement(new DateTimeType("2016-05-20"));
String id = myEncounterDao.create(enc, mySrd).getId().toUnqualifiedVersionless().getValue();
List<String> ids;
ids = toUnqualifiedVersionlessIdValues(myEncounterDao.search(Encounter.SP_DATE, new DateParam("2016-05-15")));
assertThat(ids, contains(id));
ids = toUnqualifiedVersionlessIdValues(myEncounterDao.search(Encounter.SP_DATE, new DateParam("eq2016-05-15")));
assertThat(ids, contains(id));
}
@Test

3
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/term/TerminologySvcImplTest.java
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@ -20,6 +20,7 @@ import ca.uhn.fhir.jpa.entity.ResourceTable;
import ca.uhn.fhir.jpa.entity.TermCodeSystemVersion;
import ca.uhn.fhir.jpa.entity.TermConcept;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
import ca.uhn.fhir.util.TestUtil;
@ -202,7 +203,7 @@ public class TerminologySvcImplTest extends BaseJpaDstu3Test {
try {
myTermSvc.storeNewCodeSystemVersion(table.getId(), "http://example.com/my_code_system", cs);
fail();
} catch (InvalidRequestException e) {
} catch (UnprocessableEntityException e) {
assertThat(e.getMessage(), containsString("Can not create multiple code systems with URI \"http://example.com/my_code_system\", already have one with resource ID: CodeSystem/"));
}

11
hapi-fhir-jpaserver-uhnfhirtest/src/main/java/ca/uhn/fhirtest/config/CommonConfig.java
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@ -5,6 +5,7 @@ import org.springframework.context.annotation.Configuration;
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
import ca.uhn.fhirtest.joke.HolyFooCowInterceptor;
@Configuration
public class CommonConfig {
@ -34,5 +35,15 @@ public class CommonConfig {
retVal.setLogExceptions(false);
return retVal;
}
/**
* This is a joke
*
* https://chat.fhir.org/#narrow/stream/implementers/topic/Unsupported.20search.20parameters
*/
@Bean
public IServerInterceptor holyFooCowInterceptor() {
return new HolyFooCowInterceptor();
}
}

22
hapi-fhir-jpaserver-uhnfhirtest/src/main/java/ca/uhn/fhirtest/joke/HolyFooCowInterceptor.java Normal file
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@ -0,0 +1,22 @@
package ca.uhn.fhirtest.joke;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import ca.uhn.fhir.rest.server.exceptions.UnclassifiedServerFailureException;
import ca.uhn.fhir.rest.server.interceptor.InterceptorAdapter;
public class HolyFooCowInterceptor extends InterceptorAdapter {
@Override
public boolean incomingRequestPreProcessed(HttpServletRequest theRequest, HttpServletResponse theResponse) {
if (isNotBlank(theRequest.getParameter("holyfoocow"))) {
throw new UnclassifiedServerFailureException(418, "HTTP 418 IM A TEAPOT - Jenni, please do not hack with the server, it's very fragile today.");
}
return true;
}
}

5
hapi-fhir-structures-dstu2/src/test/java/ca/uhn/fhir/rest/server/interceptor/ResponseHighlightingInterceptorTest.java
View File

@ -154,10 +154,12 @@ public class ResponseHighlightingInterceptorTest {
ServletRequestDetails reqDetails = new ServletRequestDetails();
reqDetails.setRequestType(RequestTypeEnum.GET);
reqDetails.setParameters(new HashMap<String, String[]>());
reqDetails.setServer(new RestfulServer(ourCtx));
reqDetails.setServletRequest(req);
// This can be null depending on the exception type
// reqDetails.setParameters(null);
ResourceNotFoundException exception = new ResourceNotFoundException("Not found");
exception.setOperationOutcome(new OperationOutcome().addIssue(new Issue().setDiagnostics("Hello")));
@ -168,6 +170,7 @@ public class ResponseHighlightingInterceptorTest {
assertThat(output, containsString("<span class='hlTagName'>OperationOutcome</span>"));
}
@Test
public void testHighlightNormalResponseForcePrettyPrint() throws Exception {
ResponseHighlighterInterceptor ic = new ResponseHighlighterInterceptor();

37
hapi-fhir-structures-dstu3/src/test/java/ca/uhn/fhir/rest/client/GenericClientDstu3Test.java
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@ -489,6 +489,43 @@ public class GenericClientDstu3Test {
assertEquals("http://foo.com/base/Patient/222/_history/3", capt.getAllValues().get(1).getURI().toASCIIString());
}
@Test
public void testValidate() throws Exception {
final IParser p = ourCtx.newXmlParser();
final OperationOutcome resp0 = new OperationOutcome();
resp0.getText().setDivAsString("OK!");
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
when(myHttpResponse.getStatusLine()).thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 200, "OK"));
when(myHttpResponse.getAllHeaders()).thenAnswer(new Answer<Header[]>() {
@Override
public Header[] answer(InvocationOnMock theInvocation) throws Throwable {
return new Header[] { };
}
});
when(myHttpResponse.getEntity().getContentType()).thenReturn(new BasicHeader("content-type", Constants.CT_FHIR_XML + "; charset=UTF-8"));
when(myHttpResponse.getEntity().getContent()).thenAnswer(new Answer<ReaderInputStream>() {
@Override
public ReaderInputStream answer(InvocationOnMock theInvocation) throws Throwable {
return new ReaderInputStream(new StringReader(p.encodeResourceToString(resp0)), Charset.forName("UTF-8"));
}
});
IGenericClient client = ourCtx.newRestfulGenericClient("http://example.com/fhir");
Patient pt = new Patient();
pt.setId("Patient/222");
pt.getText().setDivAsString("A PATIENT");
MethodOutcome outcome = client.validate().resource(pt).execute();
assertNotNull(outcome.getOperationOutcome());
assertEquals("<div xmlns=\"http://www.w3.org/1999/xhtml\">OK!</div>", ((OperationOutcome) outcome.getOperationOutcome()).getText().getDivAsString());
}
@Test
public void testUpdateWithPreferRepresentationServerReturnsResource() throws Exception {
final IParser p = ourCtx.newXmlParser();

32
hapi-fhir-structures-dstu3/src/test/java/ca/uhn/fhir/validation/FhirInstanceValidatorDstu3Test.java
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@ -83,38 +83,6 @@ public class FhirInstanceValidatorDstu3Test {
myValidConcepts.add(theSystem + "___" + theCode);
}
@Test
public void testValidateCarePlan() {
//@formatter:off
String input = "{\n" +
" \"resourceType\": \"Basic\",\n" +
" \"meta\": {\n" +
" \"profile\": [\n" +
" \"http://localhost:8080/baseDstu3/StructureDefinition/testBasic\"\n" +
" ]\n" +
" },\n" +
" \"code\": {\n" +
" \"coding\": [\n" +
" {\n" +
" \"system\": \"http://hl7.org/fhir/basic-resource-type\",\n" +
" \"code\": \"consent\",\n" +
" \"display\": \"Consent\"\n" +
" }\n" +
" ],\n" +
" \"text\": \"Consent\"\n" +
" },\n" +
" \"subject\": {\n" +
" \"reference\": \"Patient/2676\",\n" +
" \"display\": \"Lucy Turner\"\n" +
" }\n" +
"}";
//@formatter:on
ValidationResult output = myVal.validateWithResult(input);
List<SingleValidationMessage> errors = logResultsAndReturnNonInformationalOnes(output);
assertThat(errors, empty());
}
@Test
// @Ignore