honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity

Test fixes

This commit is contained in:
jamesagnew 2021-05-18 21:32:13 -04:00
parent 994f09e125
commit b463b072c8
10 changed files with 223794 additions and 175158 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

20
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/getting_started/versions.md
View File

@ -25,6 +25,26 @@ Note also that after the release of the FHIR DSTU2 specification, the FHIR
</tr> </tr>
</thead> </thead>
<tbody> <tbody>
<tr>
<td>HAPI FHIR 5.4.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.2</td>
<td class="versions-table-cell-draft">4.0.1</td>
<td class="versions-table-cell-release">4.6.0<span class="download-version-hash"><br/>9b829d9714</span></td>
</tr>
<tr>
<td>HAPI FHIR 5.3.0</td>
<td>JDK8</td>
<td class="versions-table-cell-empty"></td>
<td class="versions-table-cell-draft">1.0.2</td>
<td class="versions-table-cell-release">1.4.0</td>
<td class="versions-table-cell-draft">3.0.2</td>
<td class="versions-table-cell-draft">4.0.1</td>
<td class="versions-table-cell-release">4.5.0<span class="download-version-hash"><br/>6cd0af3b8c</span></td>
</tr>
<tr> <tr>
<td>HAPI FHIR 5.2.0</td> <td>HAPI FHIR 5.2.0</td>
<td>JDK8</td> <td>JDK8</td>

2
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConcurrentWriteTest.java
View File

@ -77,7 +77,7 @@ public class FhirResourceDaoR4ConcurrentWriteTest extends BaseJpaR4Test {
} }
@Test @Test
public void testConcurrentTransactionCreates() throws ExecutionException, InterruptedException { public void testConcurrentTransactionCreates() {
myDaoConfig.setMatchUrlCache(true); myDaoConfig.setMatchUrlCache(true);
AtomicInteger counter = new AtomicInteger(0); AtomicInteger counter = new AtomicInteger(0);

146097
hapi-fhir-validation-resources-r5/src/main/resources/org/hl7/fhir/r5/model/extension/extension-definitions.xml
View File

File diff suppressed because it is too large Load Diff

87894
hapi-fhir-validation-resources-r5/src/main/resources/org/hl7/fhir/r5/model/profile/profiles-others.xml
View File

File diff suppressed because it is too large Load Diff

58094
hapi-fhir-validation-resources-r5/src/main/resources/org/hl7/fhir/r5/model/profile/profiles-resources.xml
View File

File diff suppressed because it is too large Load Diff

2015
hapi-fhir-validation-resources-r5/src/main/resources/org/hl7/fhir/r5/model/profile/profiles-types.xml
View File

File diff suppressed because it is too large Load Diff

104695
hapi-fhir-validation-resources-r5/src/main/resources/org/hl7/fhir/r5/model/valueset/valuesets.xml
View File

File diff suppressed because it is too large Load Diff

7
hapi-fhir-validation/pom.xml
View File

@ -75,7 +75,12 @@
<version>${fhir_core_version}</version> <version>${fhir_core_version}</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.fhir</groupId>
<artifactId>ucum</artifactId>
</dependency>
<dependency>
<groupId>com.github.ben-manes.caffeine</groupId> <groupId>com.github.ben-manes.caffeine</groupId>
<artifactId>caffeine</artifactId> <artifactId>caffeine</artifactId>
</dependency> </dependency>

98
hapi-fhir-validation/src/main/java/org/hl7/fhir/common/hapi/validation/validator/VersionSpecificWorkerContextWrapper.java
View File

@ -666,63 +666,63 @@ public class VersionSpecificWorkerContextWrapper extends I18nBase implements IWo
return retVal; return retVal;
} }
@Nonnull @Nonnull
public static VersionSpecificWorkerContextWrapper newVersionSpecificWorkerContextWrapper(IValidationSupport theValidationSupport) { public static VersionSpecificWorkerContextWrapper newVersionSpecificWorkerContextWrapper(IValidationSupport theValidationSupport) {
IVersionTypeConverter converter; IVersionTypeConverter converter;
switch (theValidationSupport.getFhirContext().getVersion().getVersion()) { switch (theValidationSupport.getFhirContext().getVersion().getVersion()) {
case DSTU2: case DSTU2:
case DSTU2_HL7ORG: { case DSTU2_HL7ORG: {
converter = new IVersionTypeConverter() { converter = new IVersionTypeConverter() {
@Override @Override
public Resource toCanonical(IBaseResource theNonCanonical) { public Resource toCanonical(IBaseResource theNonCanonical) {
Resource retVal = VersionConvertor_10_50.convertResource((org.hl7.fhir.dstu2.model.Resource) theNonCanonical); Resource retVal = VersionConvertor_10_50.convertResource((org.hl7.fhir.dstu2.model.Resource) theNonCanonical);
if (theNonCanonical instanceof org.hl7.fhir.dstu2.model.ValueSet) { if (theNonCanonical instanceof org.hl7.fhir.dstu2.model.ValueSet) {
org.hl7.fhir.dstu2.model.ValueSet valueSet = (org.hl7.fhir.dstu2.model.ValueSet) theNonCanonical; org.hl7.fhir.dstu2.model.ValueSet valueSet = (org.hl7.fhir.dstu2.model.ValueSet) theNonCanonical;
if (valueSet.hasCodeSystem() && valueSet.getCodeSystem().hasSystem()) { if (valueSet.hasCodeSystem() && valueSet.getCodeSystem().hasSystem()) {
if (!valueSet.hasCompose()) { if (!valueSet.hasCompose()) {
ValueSet valueSetR5 = (ValueSet) retVal; ValueSet valueSetR5 = (ValueSet) retVal;
valueSetR5.getCompose().addInclude().setSystem(valueSet.getCodeSystem().getSystem()); valueSetR5.getCompose().addInclude().setSystem(valueSet.getCodeSystem().getSystem());
} }
} }
} }
return retVal; return retVal;
} }
@Override @Override
public IBaseResource fromCanonical(Resource theCanonical) { public IBaseResource fromCanonical(Resource theCanonical) {
return VersionConvertor_10_50.convertResource(theCanonical); return VersionConvertor_10_50.convertResource(theCanonical);
} }
}; };
break; break;
} }
case DSTU2_1: { case DSTU2_1: {
converter = new VersionTypeConverterDstu21(); converter = new VersionTypeConverterDstu21();
break; break;
} }
case DSTU3: { case DSTU3: {
converter = new VersionTypeConverterDstu3(); converter = new VersionTypeConverterDstu3();
break; break;
} }
case R4: { case R4: {
converter = new VersionTypeConverterR4(); converter = new VersionTypeConverterR4();
break; break;
} }
case R5: { case R5: {
converter = IDENTITY_VERSION_TYPE_CONVERTER; converter = IDENTITY_VERSION_TYPE_CONVERTER;
break; break;
} }
default: default:
throw new IllegalStateException(); throw new IllegalStateException();
} }
return new VersionSpecificWorkerContextWrapper(new ValidationSupportContext(theValidationSupport), converter); return new VersionSpecificWorkerContextWrapper(new ValidationSupportContext(theValidationSupport), converter);
} }
} }

30
hapi-tinder-plugin/src/main/java/ca/uhn/fhir/tinder/ResourceMinimizerMojo.java
View File

@ -212,21 +212,21 @@ public class ResourceMinimizerMojo extends AbstractMojo {
// byteCount += m.getByteCount(); // byteCount += m.getByteCount();
// fileCount += m.getFileCount(); // fileCount += m.getFileCount();
m = new ResourceMinimizerMojo(); // m = new ResourceMinimizerMojo();
m.myCtx = ctxR4; // m.myCtx = ctxR4;
m.targetDirectory = new File("./hapi-fhir-validation-resources-r4/src/main/resources/org/hl7/fhir/r4/model/profile"); // m.targetDirectory = new File("./hapi-fhir-validation-resources-r4/src/main/resources/org/hl7/fhir/r4/model/profile");
m.fhirVersion = "R4"; // m.fhirVersion = "R4";
m.execute(); // m.execute();
byteCount += m.getByteCount(); // byteCount += m.getByteCount();
fileCount += m.getFileCount(); // fileCount += m.getFileCount();
//
m = new ResourceMinimizerMojo(); // m = new ResourceMinimizerMojo();
m.myCtx = ctxR4; // m.myCtx = ctxR4;
m.targetDirectory = new File("./hapi-fhir-validation-resources-r4/src/main/resources/org/hl7/fhir/r4/model/valueset"); // m.targetDirectory = new File("./hapi-fhir-validation-resources-r4/src/main/resources/org/hl7/fhir/r4/model/valueset");
m.fhirVersion = "R4"; // m.fhirVersion = "R4";
m.execute(); // m.execute();
byteCount += m.getByteCount(); // byteCount += m.getByteCount();
fileCount += m.getFileCount(); // fileCount += m.getFileCount();
m = new ResourceMinimizerMojo(); m = new ResourceMinimizerMojo();
m.myCtx = ctxR5; m.myCtx = ctxR5;