honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity

Tweak re-indexing

This commit is contained in:
James 2017-02-07 07:00:51 -05:00
parent 116cb1c8f7
commit b7f165019d
4 changed files with 103 additions and 75 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/client/GenericClient.java
View File

@ -1889,7 +1889,11 @@ public class GenericClient extends BaseClient implements IGenericClient {
}
for (Include next : myRevInclude) {
addParam(params, Constants.PARAM_REVINCLUDE, next.getValue());
if (next.isRecurse()) {
addParam(params, Constants.PARAM_REVINCLUDE_RECURSE, next.getValue());
} else {
addParam(params, Constants.PARAM_REVINCLUDE, next.getValue());
}
}
if (myContext.getVersion().getVersion().isNewerThan(FhirVersionEnum.DSTU2)) {

13
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/Constants.java
View File

@ -40,11 +40,13 @@ public class Constants {
public static final String CT_HTML = "text/html";
public static final String CT_HTML_WITH_UTF8 = "text/html" + CHARSET_UTF8_CTSUFFIX;
public static final String CT_JSON = "application/json";
public static final String CT_JSON_PATCH = "application/json-patch+json";
public static final String CT_OCTET_STREAM = "application/octet-stream";
public static final String CT_TEXT = "text/plain";
public static final String CT_TEXT_WITH_UTF8 = CT_TEXT + CHARSET_UTF8_CTSUFFIX;
public static final String CT_X_FORM_URLENCODED = "application/x-www-form-urlencoded";
public static final String CT_XML = "application/xml";
public static final String CT_XML_PATCH = "application/xml-patch+xml";
public static final String ENCODING_GZIP = "gzip";
public static final String EXTOP_VALIDATE = "$validate";
public static final String EXTOP_VALIDATE_MODE = "mode";
@ -61,10 +63,10 @@ public class Constants {
public static final String FORMATS_HTML_XML = "html/xml";
public static final String HEADER_ACCEPT = "Accept";
public static final String HEADER_ACCEPT_ENCODING = "Accept-Encoding";
public static final String HEADER_ACCEPT_VALUE_JSON_NON_LEGACY = CT_FHIR_JSON_NEW + ";q=1.0, " + CT_FHIR_JSON + ";q=0.9";
public static final String HEADER_ACCEPT_VALUE_XML_NON_LEGACY = CT_FHIR_XML_NEW + ";q=1.0, " + CT_FHIR_XML + ";q=0.9";
public static final String HEADER_ACCEPT_VALUE_XML_OR_JSON_LEGACY = CT_FHIR_XML + ";q=1.0, " + CT_FHIR_JSON + ";q=1.0";
public static final String HEADER_ACCEPT_VALUE_XML_OR_JSON_NON_LEGACY = CT_FHIR_XML_NEW + ";q=1.0, " + CT_FHIR_JSON_NEW + ";q=1.0, " + HEADER_ACCEPT_VALUE_XML_OR_JSON_LEGACY.replace("1.0", "0.9");
public static final String HEADER_ACCEPT_VALUE_XML_NON_LEGACY = CT_FHIR_XML_NEW + ";q=1.0, " + CT_FHIR_XML + ";q=0.9";
public static final String HEADER_ACCEPT_VALUE_JSON_NON_LEGACY = CT_FHIR_JSON_NEW + ";q=1.0, " + CT_FHIR_JSON + ";q=0.9";
public static final String HEADER_ALLOW = "Allow";
public static final String HEADER_AUTHORIZATION = "Authorization";
public static final String HEADER_AUTHORIZATION_VALPREFIX_BASIC = "Basic ";
@ -127,10 +129,12 @@ public class Constants {
public static final String PARAM_PAGINGACTION = "_getpages";
public static final String PARAM_PAGINGOFFSET = "_getpagesoffset";
public static final String PARAM_PRETTY = "_pretty";
public static final String PARAM_PRETTY_VALUE_FALSE = "false";
public static final String PARAM_PRETTY_VALUE_TRUE = "true";
public static final String PARAM_PROFILE = "_profile";
public static final String PARAM_QUERY = "_query";
public static final String PARAM_REVINCLUDE = "_revinclude";
public static final String PARAM_REVINCLUDE_RECURSE = PARAM_REVINCLUDE+PARAM_INCLUDE_QUALIFIER_RECURSE;
public static final String PARAM_SEARCH = "_search";
public static final String PARAM_SECURITY = "_security";
public static final String PARAM_SINCE = "_since";
@ -156,11 +160,11 @@ public class Constants {
public static final int STATUS_HTTP_401_CLIENT_UNAUTHORIZED = 401;
public static final int STATUS_HTTP_403_FORBIDDEN = 403;
public static final int STATUS_HTTP_404_NOT_FOUND = 404;
public static final int STATUS_HTTP_405_METHOD_NOT_ALLOWED = 405;
public static final int STATUS_HTTP_409_CONFLICT = 409;
public static final int STATUS_HTTP_410_GONE = 410;
public static final int STATUS_HTTP_412_PRECONDITION_FAILED = 412;
public static final int STATUS_HTTP_422_UNPROCESSABLE_ENTITY = 422;
public static final int STATUS_HTTP_500_INTERNAL_ERROR = 500;
public static final int STATUS_HTTP_501_NOT_IMPLEMENTED = 501;
@ -168,9 +172,6 @@ public class Constants {
public static final String TAG_SUBSETTED_SYSTEM = "http://hl7.org/fhir/v3/ObservationValue";
public static final String URL_TOKEN_HISTORY = "_history";
public static final String URL_TOKEN_METADATA = "metadata";
public static final String CT_JSON_PATCH = "application/json-patch+json";
public static final String CT_XML_PATCH = "application/xml-patch+xml";
public static final String PARAM_PRETTY_VALUE_FALSE = "false";
static {
CHARSET_UTF8 = Charset.forName(CHARSET_NAME_UTF8);

155
hapi-fhir-structures-dstu3/src/test/java/ca/uhn/fhir/rest/client/GenericClientDstu3Test.java
View File

@ -98,7 +98,7 @@ public class GenericClientDstu3Test {
byte[] body = IOUtils.toByteArray(((HttpEntityEnclosingRequestBase) capt.getAllValues().get(0)).getEntity().getContent());
return body;
}
private String extractBodyAsString(ArgumentCaptor<HttpUriRequest> capt) throws IOException {
String body = IOUtils.toString(((HttpEntityEnclosingRequestBase) capt.getAllValues().get(0)).getEntity().getContent(), "UTF-8");
return body;
@ -120,6 +120,26 @@ public class GenericClientDstu3Test {
return capt;
}
@Test
public void testRevIncludeRecursive() throws ClientProtocolException, IOException {
ArgumentCaptor<HttpUriRequest> capt = prepareClientForSearchResponse();
IGenericClient client = ourCtx.newRestfulGenericClient("http://example.com/fhir");
int idx = 0;
client.search()
.forResource(EpisodeOfCare.class)
.where(EpisodeOfCare.PATIENT.hasId("123"))
.revInclude(Encounter.INCLUDE_EPISODEOFCARE)
.revInclude(Observation.INCLUDE_ENCOUNTER.asRecursive())
.returnBundle(Bundle.class)
.execute();
assertEquals("http://example.com/fhir/EpisodeOfCare?patient=123&_revinclude=Encounter%3Aepisodeofcare&_revinclude%3Arecurse=Observation%3Aencounter", capt.getAllValues().get(idx).getURI().toString());
idx++;
}
@Test
public void testPatchJsonByIdString() throws Exception {
OperationOutcome conf = new OperationOutcome();
@ -143,20 +163,21 @@ public class GenericClientDstu3Test {
String patch = "[ { \"op\":\"replace\", \"path\":\"/active\", \"value\":false } ]";
MethodOutcome outcome = client
.patch()
.withBody(patch)
.withId("Patient/123")
.execute();
.patch()
.withBody(patch)
.withId("Patient/123")
.execute();
assertEquals("http://example.com/fhir/Patient/123", UrlUtil.unescape(capt.getAllValues().get(idx).getURI().toString()));
assertEquals("PATCH", capt.getAllValues().get(0).getRequestLine().getMethod());
assertEquals(patch, extractBodyAsString(capt));
assertEquals(Constants.CT_JSON_PATCH, capt.getAllValues().get(idx).getFirstHeader("Content-Type").getValue().replaceAll(";.*", ""));
idx++;
OperationOutcome oo = (OperationOutcome) outcome.getOperationOutcome();
assertThat(oo.getText().getDivAsString(), containsString("OK!"));
}
@Test
public void testPatchJsonByIdType() throws Exception {
OperationOutcome conf = new OperationOutcome();
@ -180,20 +201,21 @@ public class GenericClientDstu3Test {
String patch = "[ { \"op\":\"replace\", \"path\":\"/active\", \"value\":false } ]";
MethodOutcome outcome = client
.patch()
.withBody(patch)
.withId(new IdType("http://localhost/fhir/Patient/123/_history/234"))
.execute();
.patch()
.withBody(patch)
.withId(new IdType("http://localhost/fhir/Patient/123/_history/234"))
.execute();
assertEquals("http://example.com/fhir/Patient/123", UrlUtil.unescape(capt.getAllValues().get(idx).getURI().toString()));
assertEquals("PATCH", capt.getAllValues().get(0).getRequestLine().getMethod());
assertEquals(patch, extractBodyAsString(capt));
assertEquals(Constants.CT_JSON_PATCH, capt.getAllValues().get(idx).getFirstHeader("Content-Type").getValue().replaceAll(";.*", ""));
idx++;
OperationOutcome oo = (OperationOutcome) outcome.getOperationOutcome();
assertThat(oo.getText().getDivAsString(), containsString("OK!"));
}
@Test
public void testPatchJsonByConditionalString() throws Exception {
OperationOutcome conf = new OperationOutcome();
@ -217,20 +239,21 @@ public class GenericClientDstu3Test {
String patch = "[ { \"op\":\"replace\", \"path\":\"/active\", \"value\":false } ]";
MethodOutcome outcome = client
.patch()
.withBody(patch)
.conditionalByUrl("Patient?foo=bar")
.execute();
.patch()
.withBody(patch)
.conditionalByUrl("Patient?foo=bar")
.execute();
assertEquals("http://example.com/fhir/Patient?foo=bar", UrlUtil.unescape(capt.getAllValues().get(idx).getURI().toString()));
assertEquals("PATCH", capt.getAllValues().get(0).getRequestLine().getMethod());
assertEquals(patch, extractBodyAsString(capt));
assertEquals(Constants.CT_JSON_PATCH, capt.getAllValues().get(idx).getFirstHeader("Content-Type").getValue().replaceAll(";.*", ""));
idx++;
OperationOutcome oo = (OperationOutcome) outcome.getOperationOutcome();
assertThat(oo.getText().getDivAsString(), containsString("OK!"));
}
@Test
public void testPatchJsonByConditionalParam() throws Exception {
OperationOutcome conf = new OperationOutcome();
@ -254,21 +277,22 @@ public class GenericClientDstu3Test {
String patch = "[ { \"op\":\"replace\", \"path\":\"/active\", \"value\":false } ]";
MethodOutcome outcome = client
.patch()
.withBody(patch)
.conditional("Patient").where(Patient.NAME.matches().value("TEST"))
.and(Patient.FAMILY.matches().value("TEST2"))
.execute();
.patch()
.withBody(patch)
.conditional("Patient").where(Patient.NAME.matches().value("TEST"))
.and(Patient.FAMILY.matches().value("TEST2"))
.execute();
assertEquals("http://example.com/fhir/Patient?name=TEST&family=TEST2", UrlUtil.unescape(capt.getAllValues().get(idx).getURI().toString()));
assertEquals("PATCH", capt.getAllValues().get(0).getRequestLine().getMethod());
assertEquals(patch, extractBodyAsString(capt));
assertEquals(Constants.CT_JSON_PATCH, capt.getAllValues().get(idx).getFirstHeader("Content-Type").getValue().replaceAll(";.*", ""));
idx++;
OperationOutcome oo = (OperationOutcome) outcome.getOperationOutcome();
assertThat(oo.getText().getDivAsString(), containsString("OK!"));
}
@Test
public void testPatchJsonByConditionalParamResourceType() throws Exception {
OperationOutcome conf = new OperationOutcome();
@ -292,21 +316,22 @@ public class GenericClientDstu3Test {
String patch = "[ { \"op\":\"replace\", \"path\":\"/active\", \"value\":false } ]";
MethodOutcome outcome = client
.patch()
.withBody(patch)
.conditional(Patient.class).where(Patient.NAME.matches().value("TEST"))
.and(Patient.FAMILY.matches().value("TEST2"))
.execute();
.patch()
.withBody(patch)
.conditional(Patient.class).where(Patient.NAME.matches().value("TEST"))
.and(Patient.FAMILY.matches().value("TEST2"))
.execute();
assertEquals("http://example.com/fhir/Patient?name=TEST&family=TEST2", UrlUtil.unescape(capt.getAllValues().get(idx).getURI().toString()));
assertEquals("PATCH", capt.getAllValues().get(0).getRequestLine().getMethod());
assertEquals(patch, extractBodyAsString(capt));
assertEquals(Constants.CT_JSON_PATCH, capt.getAllValues().get(idx).getFirstHeader("Content-Type").getValue().replaceAll(";.*", ""));
idx++;
OperationOutcome oo = (OperationOutcome) outcome.getOperationOutcome();
assertThat(oo.getText().getDivAsString(), containsString("OK!"));
}
@Test
public void testPatchXmlByIdString() throws Exception {
OperationOutcome conf = new OperationOutcome();
@ -330,31 +355,31 @@ public class GenericClientDstu3Test {
String patch = "<?xml version=\"1.0\" encoding=\"UTF-8\"?><diff xmlns:fhir=\"http://hl7.org/fhir\"><replace sel=\"fhir:Patient/fhir:active/@value\">false</replace></diff>";
MethodOutcome outcome = client
.patch()
.withBody(patch)
.withId("Patient/123")
.execute();
.patch()
.withBody(patch)
.withId("Patient/123")
.execute();
assertEquals("http://example.com/fhir/Patient/123", UrlUtil.unescape(capt.getAllValues().get(idx).getURI().toString()));
assertEquals("PATCH", capt.getAllValues().get(0).getRequestLine().getMethod());
assertEquals(patch, extractBodyAsString(capt));
assertEquals(Constants.CT_XML_PATCH, capt.getAllValues().get(idx).getFirstHeader("Content-Type").getValue().replaceAll(";.*", ""));
idx++;
OperationOutcome oo = (OperationOutcome) outcome.getOperationOutcome();
assertThat(oo.getText().getDivAsString(), containsString("OK!"));
}
@Test
public void testPatchInvalid() throws Exception {
IGenericClient client = ourCtx.newRestfulGenericClient("http://example.com/fhir");
try {
client
.patch()
.withBody("AA")
.withId("Patient/123")
.execute();
.patch()
.withBody("AA")
.withId("Patient/123")
.execute();
} catch (IllegalArgumentException e) {
assertEquals("Unable to determine encoding of patch", e.getMessage());
}
@ -388,7 +413,7 @@ public class GenericClientDstu3Test {
assertEquals("http://example.com/fhir/Device?_format=json", UrlUtil.unescape(capt.getAllValues().get(idx).getURI().toString()));
assertEquals("application/fhir+json;q=1.0, application/json+fhir;q=0.9", capt.getAllValues().get(idx).getFirstHeader(Constants.HEADER_ACCEPT).getValue());
idx++;
//@formatter:off
client.setEncoding(EncodingEnum.XML);
client.search()
@ -399,7 +424,7 @@ public class GenericClientDstu3Test {
assertEquals("http://example.com/fhir/Device?_format=xml", UrlUtil.unescape(capt.getAllValues().get(idx).getURI().toString()));
assertEquals("application/fhir+xml;q=1.0, application/xml+fhir;q=0.9", capt.getAllValues().get(idx).getFirstHeader(Constants.HEADER_ACCEPT).getValue());
idx++;
}
@Test
@ -480,9 +505,7 @@ public class GenericClientDstu3Test {
assertArrayEquals(new byte[] { 0, 1, 2, 3, 4 }, ourCtx.newXmlParser().parseResource(Binary.class, extractBodyAsString(capt)).getContent());
}
@SuppressWarnings("unchecked")
@Test
public void testClientFailures() throws Exception {
@ -592,7 +615,7 @@ public class GenericClientDstu3Test {
assertEquals(myAnswerCount, capt.getAllValues().size());
assertEquals("http://example.com/fhir/Patient", capt.getAllValues().get(0).getURI().toASCIIString());
assertEquals(Constants.CT_FHIR_XML_NEW, capt.getAllValues().get(0).getFirstHeader("content-type").getValue().replaceAll(";.*", ""));
assertEquals("http://foo.com/base/Patient/222/_history/3", capt.getAllValues().get(1).getURI().toASCIIString());
}
@ -1027,7 +1050,7 @@ public class GenericClientDstu3Test {
assertEquals("http://example.com/fhir/Patient", capt.getAllValues().get(idx).getURI().toString());
idx++;
//@formatter:off
client
.search()
@ -1053,22 +1076,22 @@ public class GenericClientDstu3Test {
idx++;
}
@Test
public void testPutDoesntForceAllIdsJson() throws Exception {
IParser p = ourCtx.newJsonParser();
Patient patient = new Patient();
patient.setId("PATIENT1");
patient.addName().setFamily("PATIENT1");
Bundle bundle = new Bundle();
bundle.setId("BUNDLE1");
bundle.addEntry().setResource(patient);
final String encoded = p.encodeResourceToString(bundle);
assertEquals("{\"resourceType\":\"Bundle\",\"id\":\"BUNDLE1\",\"entry\":[{\"resource\":{\"resourceType\":\"Patient\",\"id\":\"PATIENT1\",\"name\":[{\"family\":\"PATIENT1\"}]}}]}", encoded);
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
when(myHttpResponse.getStatusLine()).thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 200, "OK"));
@ -1251,7 +1274,7 @@ public class GenericClientDstu3Test {
.returnBundle(Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?birthdate=gt"+dateString, capt.getAllValues().get(idx).getURI().toString());
assertEquals("http://example.com/fhir/Patient?birthdate=gt" + dateString, capt.getAllValues().get(idx).getURI().toString());
idx++;
//@formatter:off
@ -1261,7 +1284,7 @@ public class GenericClientDstu3Test {
.returnBundle(Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?birthdate=gt"+dateString, capt.getAllValues().get(idx).getURI().toString());
assertEquals("http://example.com/fhir/Patient?birthdate=gt" + dateString, capt.getAllValues().get(idx).getURI().toString());
idx++;
//@formatter:off
@ -1271,7 +1294,7 @@ public class GenericClientDstu3Test {
.returnBundle(Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?birthdate=ge"+dateString, capt.getAllValues().get(idx).getURI().toString());
assertEquals("http://example.com/fhir/Patient?birthdate=ge" + dateString, capt.getAllValues().get(idx).getURI().toString());
idx++;
//@formatter:off
@ -1281,7 +1304,7 @@ public class GenericClientDstu3Test {
.returnBundle(Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?birthdate=lt"+dateString, capt.getAllValues().get(idx).getURI().toString());
assertEquals("http://example.com/fhir/Patient?birthdate=lt" + dateString, capt.getAllValues().get(idx).getURI().toString());
idx++;
//@formatter:off
@ -1291,7 +1314,7 @@ public class GenericClientDstu3Test {
.returnBundle(Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?birthdate=le"+dateString, capt.getAllValues().get(idx).getURI().toString());
assertEquals("http://example.com/fhir/Patient?birthdate=le" + dateString, capt.getAllValues().get(idx).getURI().toString());
idx++;
//@formatter:off
@ -1301,7 +1324,7 @@ public class GenericClientDstu3Test {
.returnBundle(Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?birthdate="+dateString, capt.getAllValues().get(idx).getURI().toString());
assertEquals("http://example.com/fhir/Patient?birthdate=" + dateString, capt.getAllValues().get(idx).getURI().toString());
idx++;
//@formatter:off
@ -1639,7 +1662,7 @@ public class GenericClientDstu3Test {
int idx = 0;
Collection<String> values = Arrays.asList("VAL1", "VAL2", "VAL3A,B");
//@formatter:off
client.search()
.forResource("Patient")
@ -1743,7 +1766,6 @@ public class GenericClientDstu3Test {
assertEquals("Unable to determing encoding of request (body does not appear to be valid XML or JSON)", e.getMessage());
}
}
@Test
@ -2012,7 +2034,7 @@ public class GenericClientDstu3Test {
MyPatientWithExtensions patient = new MyPatientWithExtensions();
patient.setId("123");
patient.getText().setDivAsString("OK!");
final String respString = p.encodeResourceToString(patient);
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
@ -2028,7 +2050,7 @@ public class GenericClientDstu3Test {
IGenericClient client = ourCtx.newRestfulGenericClient("http://example.com/fhir");
MyPatientWithExtensions read = client.read().resource(MyPatientWithExtensions.class).withId(new IdType("1")).execute();
assertEquals("<div xmlns=\"http://www.w3.org/1999/xhtml\">OK!</div>", read.getText().getDivAsString());
// Ensure that we haven't overridden the default type for the name
assertFalse(MyPatientWithExtensions.class.isAssignableFrom(Patient.class));
assertFalse(Patient.class.isAssignableFrom(MyPatientWithExtensions.class));
@ -2037,7 +2059,7 @@ public class GenericClientDstu3Test {
IParser parser = ourCtx.newXmlParser();
String encoded = parser.encodeResourceToString(pt);
pt = (Patient) parser.parseResource(encoded);
}
@Test
@ -2045,13 +2067,12 @@ public class GenericClientDstu3Test {
IParser p = ourCtx.newXmlParser();
Bundle b = new Bundle();
MyPatientWithExtensions patient = new MyPatientWithExtensions();
patient.setId("123");
patient.getText().setDivAsString("OK!");
b.addEntry().setResource(patient);
final String respString = p.encodeResourceToString(b);
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
@ -2066,7 +2087,7 @@ public class GenericClientDstu3Test {
IGenericClient client = ourCtx.newRestfulGenericClient("http://example.com/fhir");
Bundle bundle = client.search().forResource(MyPatientWithExtensions.class).returnBundle(Bundle.class).execute();
assertEquals(1, bundle.getEntry().size());
assertEquals(MyPatientWithExtensions.class, bundle.getEntry().get(0).getResource().getClass());
}
@ -2082,8 +2103,6 @@ public class GenericClientDstu3Test {
assertEquals(expectedUserAgent(), capt.getAllValues().get(0).getHeaders("User-Agent")[0].getValue());
}
@AfterClass
public static void afterClassClearContext() {
TestUtil.clearAllStaticFieldsForUnitTest();
@ -2093,5 +2112,5 @@ public class GenericClientDstu3Test {
public static void beforeClass() {
ourCtx = FhirContext.forDstu3();
}
}

4
src/changes/changes.xml
View File

@ -123,6 +123,10 @@
Clean up dependencies and remove Eclipse project files from git. Thanks to
@sekaijin for the pull request!
</action>
<action type="fix">
Client revincludes did not include the :recurse modifier. Thanks to
Jenny Meinsma for pointing this out on Zulip!
</action>
</release>
<release version="2.2" date="2016-12-20">
<action type="add">