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started document operation implementation

This commit is contained in:
patrick-werner 2018-03-19 10:41:14 +01:00
parent c245798cc7
commit baa80f5cd3
3 changed files with 211 additions and 5 deletions
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2
hapi-fhir-jpaserver-base/pom.xml
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@ -568,7 +568,7 @@
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<runOrder>alphabetical</runOrder>
<argLine>${argLine} -Dfile.encoding=UTF-8 -Xmx1024m</argLine>
<argLine>@{argLine} -Dfile.encoding=UTF-8 -Xmx1024m</argLine>
<forkCount>0.6C</forkCount>
</configuration>
</plugin>

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/dstu3/BaseJpaResourceProviderCompositionDstu3.java
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@ -1,7 +1,6 @@
package ca.uhn.fhir.jpa.provider.dstu3;
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoComposition;
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoPatient;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.valueset.BundleTypeEnum;
import ca.uhn.fhir.rest.annotation.IdParam;
@ -13,9 +12,6 @@ import ca.uhn.fhir.rest.api.SortSpec;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.api.server.RequestDetails;
import ca.uhn.fhir.rest.param.DateRangeParam;
import ca.uhn.fhir.rest.param.StringAndListParam;
import ca.uhn.fhir.rest.param.StringOrListParam;
import ca.uhn.fhir.rest.param.StringParam;
import org.hl7.fhir.dstu3.model.*;
import java.util.List;

210
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/CompositionDocumentDstu3Test.java Normal file
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@ -0,0 +1,210 @@
package ca.uhn.fhir.jpa.provider.dstu3;
import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.parser.StrictErrorHandler;
import ca.uhn.fhir.rest.api.EncodingEnum;
import ca.uhn.fhir.util.TestUtil;
import com.google.common.base.Charsets;
import org.apache.commons.io.IOUtils;
import org.apache.http.client.ClientProtocolException;
import org.apache.http.client.methods.CloseableHttpResponse;
import org.apache.http.client.methods.HttpGet;
import org.hl7.fhir.dstu3.model.*;
import org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent;
import org.hl7.fhir.dstu3.model.Encounter.EncounterStatus;
import org.hl7.fhir.dstu3.model.Observation.ObservationStatus;
import org.junit.After;
import org.junit.AfterClass;
import org.junit.Before;
import org.junit.Test;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Set;
import java.util.TreeSet;
import static org.hamcrest.Matchers.*;
import static org.junit.Assert.*;
public class CompositionDocumentDstu3Test extends BaseResourceProviderDstu3Test {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(CompositionDocumentDstu3Test.class);
private String orgId;
private String patId;
private String encId1;
private String encId2;
private ArrayList<String> myObsIds;
private String myWrongPatId;
private String myWrongEnc1;
@Before
public void beforeDisableResultReuse() {
myDaoConfig.setReuseCachedSearchResultsForMillis(null);
}
@Override
@After
public void after() throws Exception {
super.after();
myDaoConfig.setReuseCachedSearchResultsForMillis(new DaoConfig().getReuseCachedSearchResultsForMillis());
}
@Override
public void before() throws Exception {
super.before();
myFhirCtx.setParserErrorHandler(new StrictErrorHandler());
myDaoConfig.setAllowMultipleDelete(true);
Organization org = new Organization();
org.setName("an org");
orgId = ourClient.create().resource(org).execute().getId().toUnqualifiedVersionless().getValue();
ourLog.info("OrgId: {}", orgId);
Patient patient = new Patient();
patient.getManagingOrganization().setReference(orgId);
patId = ourClient.create().resource(patient).execute().getId().toUnqualifiedVersionless().getValue();
Patient patient2 = new Patient();
patient2.getManagingOrganization().setReference(orgId);
myWrongPatId = ourClient.create().resource(patient2).execute().getId().toUnqualifiedVersionless().getValue();
Encounter enc1 = new Encounter();
enc1.setStatus(EncounterStatus.CANCELLED);
enc1.getSubject().setReference(patId);
enc1.getServiceProvider().setReference(orgId);
encId1 = ourClient.create().resource(enc1).execute().getId().toUnqualifiedVersionless().getValue();
Encounter enc2 = new Encounter();
enc2.setStatus(EncounterStatus.ARRIVED);
enc2.getSubject().setReference(patId);
enc2.getServiceProvider().setReference(orgId);
encId2 = ourClient.create().resource(enc2).execute().getId().toUnqualifiedVersionless().getValue();
Encounter wrongEnc1 = new Encounter();
wrongEnc1.setStatus(EncounterStatus.ARRIVED);
wrongEnc1.getSubject().setReference(myWrongPatId);
wrongEnc1.getServiceProvider().setReference(orgId);
myWrongEnc1 = ourClient.create().resource(wrongEnc1).execute().getId().toUnqualifiedVersionless().getValue();
myObsIds = new ArrayList<String>();
for (int i = 0; i < 20; i++) {
Observation obs = new Observation();
obs.getSubject().setReference(patId);
obs.setStatus(ObservationStatus.FINAL);
String obsId = ourClient.create().resource(obs).execute().getId().toUnqualifiedVersionless().getValue();
myObsIds.add(obsId);
}
}
/**
* See #674
*/
@Test
public void testEverythingReturnsCorrectResources() throws Exception {
Bundle bundle = fetchBundle(ourServerBase + "/" + patId + "/$everything?_format=json&_count=100", EncodingEnum.JSON);
assertNull(bundle.getLink("next"));
Set<String> actual = new TreeSet<String>();
for (BundleEntryComponent nextEntry : bundle.getEntry()) {
actual.add(nextEntry.getResource().getIdElement().toUnqualifiedVersionless().getValue());
}
ourLog.info("Found IDs: {}", actual);
assertThat(actual, hasItem(patId));
assertThat(actual, hasItem(encId1));
assertThat(actual, hasItem(encId2));
assertThat(actual, hasItem(orgId));
assertThat(actual, hasItems(myObsIds.toArray(new String[0])));
assertThat(actual, not(hasItem(myWrongPatId)));
assertThat(actual, not(hasItem(myWrongEnc1)));
}
/**
* See #674
*/
@Test
public void testEverythingReturnsCorrectResourcesSmallPage() throws Exception {
myDaoConfig.setEverythingIncludesFetchPageSize(1);
Bundle bundle = fetchBundle(ourServerBase + "/" + patId + "/$everything?_format=json&_count=100", EncodingEnum.JSON);
assertNull(bundle.getLink("next"));
Set<String> actual = new TreeSet<String>();
for (BundleEntryComponent nextEntry : bundle.getEntry()) {
actual.add(nextEntry.getResource().getIdElement().toUnqualifiedVersionless().getValue());
}
ourLog.info("Found IDs: {}", actual);
assertThat(actual, hasItem(patId));
assertThat(actual, hasItem(encId1));
assertThat(actual, hasItem(encId2));
assertThat(actual, hasItem(orgId));
assertThat(actual, hasItems(myObsIds.toArray(new String[0])));
assertThat(actual, not(hasItem(myWrongPatId)));
assertThat(actual, not(hasItem(myWrongEnc1)));
}
/**
* See #674
*/
@Test
public void testEverythingPagesWithCorrectEncodingJson() throws Exception {
Bundle bundle = fetchBundle(ourServerBase + "/" + patId + "/$everything?_format=json&_count=1", EncodingEnum.JSON);
assertNotNull(bundle.getLink("next").getUrl());
assertThat(bundle.getLink("next").getUrl(), containsString("_format=json"));
bundle = fetchBundle(bundle.getLink("next").getUrl(), EncodingEnum.JSON);
assertNotNull(bundle.getLink("next").getUrl());
assertThat(bundle.getLink("next").getUrl(), containsString("_format=json"));
bundle = fetchBundle(bundle.getLink("next").getUrl(), EncodingEnum.JSON);
}
/**
* See #674
*/
@Test
public void testEverythingPagesWithCorrectEncodingXml() throws Exception {
Bundle bundle = fetchBundle(ourServerBase + "/" + patId + "/$everything?_format=xml&_count=1", EncodingEnum.XML);
assertNotNull(bundle.getLink("next").getUrl());
ourLog.info("Next link: {}", bundle.getLink("next").getUrl());
assertThat(bundle.getLink("next").getUrl(), containsString("_format=xml"));
bundle = fetchBundle(bundle.getLink("next").getUrl(), EncodingEnum.XML);
assertNotNull(bundle.getLink("next").getUrl());
ourLog.info("Next link: {}", bundle.getLink("next").getUrl());
assertThat(bundle.getLink("next").getUrl(), containsString("_format=xml"));
bundle = fetchBundle(bundle.getLink("next").getUrl(), EncodingEnum.XML);
}
private Bundle fetchBundle(String theUrl, EncodingEnum theEncoding) throws IOException, ClientProtocolException {
Bundle bundle;
HttpGet get = new HttpGet(theUrl);
CloseableHttpResponse resp = ourHttpClient.execute(get);
try {
assertEquals(theEncoding.getResourceContentTypeNonLegacy(), resp.getFirstHeader(ca.uhn.fhir.rest.api.Constants.HEADER_CONTENT_TYPE).getValue().replaceAll(";.*", ""));
bundle = theEncoding.newParser(myFhirCtx).parseResource(Bundle.class, IOUtils.toString(resp.getEntity().getContent(), Charsets.UTF_8));
} finally {
IOUtils.closeQuietly(resp);
}
return bundle;
}
@AfterClass
public static void afterClassClearContext() {
TestUtil.clearAllStaticFieldsForUnitTest();
}
}