Enhance test by adding operations use cases. Improve test data with more version differentiators.
This commit is contained in:
juan.marchionatto
parent
8288d12e97
commit
bd456dfff2
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@ -1,8 +1,12 @@
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package ca.uhn.fhir.jpa.term;
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import ca.uhn.fhir.context.support.IValidationSupport;
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import ca.uhn.fhir.context.support.ValidationSupportContext;
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import ca.uhn.fhir.jpa.api.dao.IFhirResourceDao;
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import ca.uhn.fhir.jpa.config.BaseConfig;
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import ca.uhn.fhir.jpa.dao.r4.BaseJpaR4Test;
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import ca.uhn.fhir.jpa.entity.TermCodeSystemVersion;
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import ca.uhn.fhir.jpa.entity.TermConcept;
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import ca.uhn.fhir.jpa.entity.TermValueSet;
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import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
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import ca.uhn.fhir.jpa.term.api.ITermReadSvc;
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@ -10,12 +14,15 @@ import ca.uhn.fhir.rest.api.server.IBundleProvider;
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import ca.uhn.fhir.rest.param.TokenParam;
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import ca.uhn.fhir.rest.param.UriParam;
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import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
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import com.google.common.collect.Lists;
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import com.google.common.collect.Sets;
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import org.apache.commons.lang3.StringUtils;
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import org.hl7.fhir.instance.model.api.IBaseResource;
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import org.hl7.fhir.instance.model.api.IIdType;
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import org.hl7.fhir.r4.model.CodeSystem;
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import org.hl7.fhir.r4.model.CodeType;
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import org.hl7.fhir.r4.model.IdType;
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import org.hl7.fhir.r4.model.UriType;
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import org.hl7.fhir.r4.model.ValueSet;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Test;
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@ -24,6 +31,7 @@ import org.mockito.Mock;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Qualifier;
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import org.springframework.util.ResourceUtils;
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import javax.persistence.EntityManager;
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@ -81,15 +89,20 @@ import static org.mockito.Mockito.when;
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public class TerminologySvcImplCurrentVersionR4Test extends BaseJpaR4Test {
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private static final Logger ourLog = LoggerFactory.getLogger(TerminologySvcImplCurrentVersionR4Test.class);
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public static final String BASE_VS_URL = "http://loinc.org/vs/";
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// some ValueSets have a version specified independent of the CS version being uploaded. This is one of them
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public static final String VS_VERSIONED_ON_UPLOAD_ID = "LL1000-0";
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public static final String VS_VERSIONED_ON_UPLOAD = BASE_VS_URL + VS_VERSIONED_ON_UPLOAD_ID;
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public static final String BASE_LOINC_URL = "http://loinc.org";
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public static final String BASE_LOINC_VS_URL = BASE_LOINC_URL + "/vs/";
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// some ValueSets have a version specified independent of the CS version being uploaded. This one doesn't
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public static final String VS_NO_VERSIONED_ON_UPLOAD_ID = "loinc-rsna-radiology-playbook";
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public static final String VS_NO_VERSIONED_ON_UPLOAD = BASE_VS_URL + VS_NO_VERSIONED_ON_UPLOAD_ID;
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public static final String VS_NO_VERSIONED_ON_UPLOAD = BASE_LOINC_VS_URL + VS_NO_VERSIONED_ON_UPLOAD_ID;
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public static final String VS_NO_VERSIONED_ON_UPLOAD_FIRST_CODE = "17787-3";
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public static final String VS_NO_VERSIONED_ON_UPLOAD_FIRST_DISPLAY = "NM Thyroid gland Study report";
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// some ValueSets have a version specified independent of the CS version being uploaded. This is one of them
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public static final String VS_VERSIONED_ON_UPLOAD_ID = "LL1000-0";
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public static final String VS_VERSIONED_ON_UPLOAD = BASE_LOINC_VS_URL + VS_VERSIONED_ON_UPLOAD_ID;
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public static final String VS_VERSIONED_ON_UPLOAD_FIRST_CODE = "LA13825-7";
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public static final String VS_VERSIONED_ON_UPLOAD_FIRST_DISPLAY = "1 slice or 1 dinner roll";
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public static final String VS_ANSWER_LIST_VERSION = "Beta.1";
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public static final Set<String> possibleVersions = Sets.newHashSet("2.67", "2.68", "2.69");
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@ -104,6 +117,9 @@ public class TerminologySvcImplCurrentVersionR4Test extends BaseJpaR4Test {
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@Autowired private TermLoaderSvcImpl myTermLoaderSvc;
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@Autowired private ITermReadSvc myITermReadSvc;
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@Autowired
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@Qualifier(BaseConfig.JPA_VALIDATION_SUPPORT)
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private IValidationSupport myJpaPersistedResourceValidationSupport;
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private ZipCollectionBuilder myFiles;
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private ServletRequestDetails myRequestDetails = new ServletRequestDetails();
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@ -124,6 +140,9 @@ public class TerminologySvcImplCurrentVersionR4Test extends BaseJpaR4Test {
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public void beforeEach() throws Exception {
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// myTermLoaderSvc = TermLoaderSvcImpl.withoutProxyCheck(myTermDeferredStorageSvc, myTermCodeSystemStorageSvc);
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// myTermSvc.preExpandDeferredValueSetsToTerminologyTables();
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File file = ResourceUtils.getFile("classpath:loinc-ver/" + LOINC_UPLOAD_PROPERTIES_FILE.getCode());
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uploadProperties = new Properties();
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uploadProperties.load(new FileInputStream(file));
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@ -136,58 +155,188 @@ public class TerminologySvcImplCurrentVersionR4Test extends BaseJpaR4Test {
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/**
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* For input version or for current (when input is null) validates following operations:
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* _ JpaTerminologyProvider.in()
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* _ JpaTerminologyProvider.expand()
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* _ JpaTerminologyProvider.lookup()
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*
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* _ BaseJpaResourceProvider.read()
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* _ BaseJpaResourceProvider.validate()
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* For input version or for current (when input is null) validates search, expand, lookup and validateCode operations
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*/
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private void validateOperations(Collection<String> theExpectedVersions) {
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private void validateOperations(String currentVersion, Collection<String> theExpectedVersions) {
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validateValueSetSearch(theExpectedVersions);
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validateValueExpand(theExpectedVersions);
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validateValueExpand(currentVersion, theExpectedVersions);
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validateValueLookup(theExpectedVersions);
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// // JpaTerminologyProvider.lookup()
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// // JpaTerminologyProvider.in()
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// BaseJpaResourceProviderCodeSystemR4.lookup()
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// BaseJpaResourceProviderCodeSystemR4.subsumes()
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// BaseJpaResourceProviderCodeSystemR4.validateCode()
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// validateValueLookup(currentVersion, theExpectedVersions);
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//
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}
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private void validateValueLookup(Collection<String> theExpectedVersions) {
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// validateValidateCode(currentVersion, theExpectedVersions);
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}
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private void validateValueExpand(Collection<String> theExpectedVersions) {
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private void validateValidateCode(String theCurrentVersion, Collection<String> allVersions) {
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IValidationSupport.CodeValidationResult resultNoVersioned = myCodeSystemDao.validateCode(null,
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new UriType(BASE_LOINC_URL), null, new CodeType(VS_NO_VERSIONED_ON_UPLOAD_FIRST_CODE),
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null, null, null, null);
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assertNotNull(resultNoVersioned);
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assertEquals(prefixWithVersion(theCurrentVersion, VS_NO_VERSIONED_ON_UPLOAD_FIRST_DISPLAY), resultNoVersioned.getDisplay());
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IValidationSupport.CodeValidationResult resultVersioned = myCodeSystemDao.validateCode(null,
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new UriType(BASE_LOINC_URL), null, new CodeType(VS_VERSIONED_ON_UPLOAD_FIRST_CODE),
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null, null, null, null);
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assertNotNull(resultVersioned);
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assertEquals(prefixWithVersion(theCurrentVersion, VS_VERSIONED_ON_UPLOAD_FIRST_DISPLAY), resultVersioned.getDisplay());
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allVersions.forEach(this::validateValidateCodeForVersion);
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}
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private void validateValidateCodeForVersion(String theVersion) {
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IValidationSupport.CodeValidationResult resultNoVersioned = myCodeSystemDao.validateCode(null,
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new UriType(BASE_LOINC_URL), null, new CodeType(VS_NO_VERSIONED_ON_UPLOAD_FIRST_CODE),
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null, null, null, null);
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assertNotNull(resultNoVersioned);
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assertEquals(prefixWithVersion(theVersion, VS_NO_VERSIONED_ON_UPLOAD_FIRST_DISPLAY), resultNoVersioned.getDisplay());
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IValidationSupport.CodeValidationResult resultVersioned = myCodeSystemDao.validateCode(null,
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new UriType(BASE_LOINC_URL), null, new CodeType(VS_VERSIONED_ON_UPLOAD_FIRST_CODE),
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null, null, null, null);
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assertNotNull(resultVersioned);
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assertEquals(prefixWithVersion(theVersion, VS_VERSIONED_ON_UPLOAD_FIRST_DISPLAY), resultVersioned.getDisplay());
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}
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private void validateValueLookup(String theCurrentVersion, Collection<String> allVersions) {
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IValidationSupport.LookupCodeResult resultNoVer = myValidationSupport.lookupCode(
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new ValidationSupportContext(myValidationSupport), BASE_LOINC_URL, VS_NO_VERSIONED_ON_UPLOAD_FIRST_CODE, null);
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assertNotNull(resultNoVer);
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String expectedNoVer = prefixWithVersion(theCurrentVersion, VS_NO_VERSIONED_ON_UPLOAD_FIRST_DISPLAY);
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assertEquals(expectedNoVer, resultNoVer.getCodeDisplay());
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IValidationSupport.LookupCodeResult resultWithVer = myValidationSupport.lookupCode(
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new ValidationSupportContext(myValidationSupport), BASE_LOINC_URL, VS_VERSIONED_ON_UPLOAD_FIRST_CODE, null);
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assertNotNull(resultWithVer);
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String expectedWithVer = prefixWithVersion(theCurrentVersion, VS_VERSIONED_ON_UPLOAD_FIRST_DISPLAY);
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assertEquals(expectedWithVer, resultWithVer.getCodeDisplay());
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allVersions.forEach(this::lookupForVersion);
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}
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private void lookupForVersion(String theVersion) {
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IValidationSupport.LookupCodeResult resultNoVer = myValidationSupport.lookupCode(
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new ValidationSupportContext(myValidationSupport), BASE_LOINC_URL + "|" + theVersion,
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VS_NO_VERSIONED_ON_UPLOAD_FIRST_CODE, null);
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assertNotNull(resultNoVer);
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String expectedNoVer = prefixWithVersion(theVersion, VS_NO_VERSIONED_ON_UPLOAD_FIRST_DISPLAY);
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assertEquals(expectedNoVer, resultNoVer.getCodeDisplay());
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IValidationSupport.LookupCodeResult resultWithVer = myValidationSupport.lookupCode(
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new ValidationSupportContext(myValidationSupport), BASE_LOINC_URL + "|" + theVersion,
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VS_VERSIONED_ON_UPLOAD_FIRST_CODE, null);
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assertNotNull(resultWithVer);
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String expectedWithVer = prefixWithVersion(theVersion, VS_VERSIONED_ON_UPLOAD_FIRST_DISPLAY);
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assertEquals(expectedWithVer, resultWithVer.getCodeDisplay());
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}
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private String prefixWithVersion(String version, String suffix) {
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return (version == null ? "" : "v" + version + " ") + suffix;
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}
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private void validateValueExpand(String currentVersion, Collection<String> theAllVersions) {
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// for CS ver = null, VS ver = null
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ValueSet vs = myValueSetDao.expandByIdentifier(VS_NO_VERSIONED_ON_UPLOAD, null);
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assertEquals(1, vs.getExpansion().getContains().size());
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// version was added before code display to validate
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assertEquals(prefixWithVersion(currentVersion, VS_NO_VERSIONED_ON_UPLOAD_FIRST_DISPLAY),
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vs.getExpansion().getContains().iterator().next().getDisplay());
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// for CS ver = null, VS ver != null
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ValueSet vs1 = myValueSetDao.expandByIdentifier(VS_VERSIONED_ON_UPLOAD + "|" + VS_ANSWER_LIST_VERSION, null);
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assertEquals(3, vs1.getExpansion().getContains().size());
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// now for each uploaded version
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theExpectedVersions.forEach(this::validateValueExpandForVersion);
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assertEquals(prefixWithVersion(currentVersion, VS_VERSIONED_ON_UPLOAD_FIRST_DISPLAY),
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vs1.getExpansion().getContains().iterator().next().getDisplay());
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validateExpandedTermConcepts(currentVersion, theAllVersions);
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// now for each uploaded version
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theAllVersions.forEach(this::validateValueExpandForVersion);
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}
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private void validateExpandedTermConcepts(String theCurrentVersion, Collection<String> theAllVersions) {
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@SuppressWarnings("unchecked")
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TermConcept termConceptNoVerCsvNoVer = (TermConcept) myEntityManager.createQuery(
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"select tc from TermConcept tc join fetch tc.myCodeSystem tcsv where tc.myCode = '" +
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VS_NO_VERSIONED_ON_UPLOAD_FIRST_CODE + "' and tcsv.myCodeSystemVersionId is null").getSingleResult();
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assertNotNull(termConceptNoVerCsvNoVer);
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assertEquals(VS_NO_VERSIONED_ON_UPLOAD_FIRST_DISPLAY, termConceptNoVerCsvNoVer.getDisplay());
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@SuppressWarnings("unchecked")
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TermConcept termConceptVerCsvNoVer = (TermConcept) myEntityManager.createQuery(
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"select tc from TermConcept tc join fetch tc.myCodeSystem tcsv where tc.myCode = '" +
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VS_VERSIONED_ON_UPLOAD_FIRST_CODE + "' and tcsv.myCodeSystemVersionId is null").getSingleResult();
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assertNotNull(termConceptVerCsvNoVer);
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assertEquals(VS_VERSIONED_ON_UPLOAD_FIRST_DISPLAY, termConceptVerCsvNoVer.getDisplay());
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if (theCurrentVersion != null) {
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@SuppressWarnings("unchecked")
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TermConcept termConceptNoVerCsvVer = (TermConcept) myEntityManager.createQuery(
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"select tc from TermConcept tc join fetch tc.myCodeSystem tcsv where tc.myCode = '" +
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VS_NO_VERSIONED_ON_UPLOAD_FIRST_CODE + "' and tcsv.myCodeSystemVersionId is null").getSingleResult();
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assertNotNull(termConceptNoVerCsvVer);
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assertEquals(VS_NO_VERSIONED_ON_UPLOAD_FIRST_DISPLAY, termConceptNoVerCsvVer.getDisplay());
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@SuppressWarnings("unchecked")
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TermConcept termConceptVerCsvVer = (TermConcept) myEntityManager.createQuery(
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"select tc from TermConcept tc join fetch tc.myCodeSystem tcsv where tc.myCode = '" +
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VS_VERSIONED_ON_UPLOAD_FIRST_CODE + "' and tcsv.myCodeSystemVersionId is null").getSingleResult();
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assertNotNull(termConceptVerCsvVer);
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assertEquals(VS_VERSIONED_ON_UPLOAD_FIRST_DISPLAY, termConceptVerCsvVer.getDisplay());
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}
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theAllVersions.forEach(this::validateExpandedTermConceptsForVersion);
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}
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private void validateExpandedTermConceptsForVersion(String theVersion) {
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@SuppressWarnings("unchecked")
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TermConcept termConceptNoVer = (TermConcept) myEntityManager.createQuery(
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"select tc from TermConcept tc join fetch tc.myCodeSystem tcsv where tc.myCode = '" +
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VS_NO_VERSIONED_ON_UPLOAD_FIRST_CODE + "' and tcsv.myCodeSystemVersionId = '" + theVersion + "'").getSingleResult();
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assertNotNull(termConceptNoVer);
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assertEquals(prefixWithVersion(theVersion, VS_NO_VERSIONED_ON_UPLOAD_FIRST_DISPLAY), termConceptNoVer.getDisplay());
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@SuppressWarnings("unchecked")
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TermConcept termConceptVer = (TermConcept) myEntityManager.createQuery(
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"select tc from TermConcept tc join fetch tc.myCodeSystem tcsv where tc.myCode = '" +
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VS_VERSIONED_ON_UPLOAD_FIRST_CODE + "' and tcsv.myCodeSystemVersionId = '" + theVersion + "'").getSingleResult();
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assertNotNull(termConceptVer);
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assertEquals(prefixWithVersion(theVersion, VS_VERSIONED_ON_UPLOAD_FIRST_DISPLAY), termConceptVer.getDisplay());
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}
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private void validateValueExpandForVersion(String theVersion) {
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// for CS ver != null, VS ver = null
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ValueSet vs2 = myValueSetDao.expandByIdentifier(
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VS_NO_VERSIONED_ON_UPLOAD + "|" + theVersion, null);
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assertEquals(1, vs2.getExpansion().getContains().size());
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// version was added before code display to validate
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assertEquals(prefixWithVersion(theVersion, VS_NO_VERSIONED_ON_UPLOAD_FIRST_DISPLAY),
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vs2.getExpansion().getContains().iterator().next().getDisplay());
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// for CS ver != null, VS ver != null
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ValueSet vs3 = myValueSetDao.expandByIdentifier(
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VS_VERSIONED_ON_UPLOAD + "|" + VS_ANSWER_LIST_VERSION + "-" + theVersion, null);
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assertEquals(3, vs3.getExpansion().getContains().size());
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// version was added before code display to validate
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assertEquals(prefixWithVersion( theVersion, VS_VERSIONED_ON_UPLOAD_FIRST_DISPLAY),
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vs3.getExpansion().getContains().iterator().next().getDisplay());
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}
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@ -288,13 +437,11 @@ public class TerminologySvcImplCurrentVersionR4Test extends BaseJpaR4Test {
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/**
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* Validates that:
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* for CodeSystem:
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* _ current CS has no version, obtaining it from DAO
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* _ current CS has no version
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* _ current TCS has no version
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* for ValueSet:
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* _ current TVSs with upload version have upload-version with no version append
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* _ current TVSs with no upload version have null version
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* operations:
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* _ validate operation for current (no version parameter)
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*/
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private void runCommonValidations(String theVersion) {
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// for CodeSystem:
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@ -308,6 +455,11 @@ public class TerminologySvcImplCurrentVersionR4Test extends BaseJpaR4Test {
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shouldNotBePresentVersions.remove(theVersion);
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shouldNotBePresentVersions.stream().forEach(vv -> assertFalse(csString.contains(vv)));
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// same reading it from term service
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CodeSystem cs = myITermReadSvc.fetchCanonicalCodeSystemFromCompleteContext(BASE_LOINC_URL);
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assertEquals(BASE_LOINC_URL, cs.getUrl());
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assertNull(cs.getVersion());
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// _ current TermCodeSystem has no version
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TermCodeSystemVersion termCSVersion = fetchCurrentCodeSystemVersion();
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assertNotNull(termCSVersion);
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@ -315,6 +467,11 @@ public class TerminologySvcImplCurrentVersionR4Test extends BaseJpaR4Test {
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// for ValueSet:
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// for ValueSet resource
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ValueSet vs = (ValueSet) myJpaPersistedResourceValidationSupport.fetchValueSet(VS_NO_VERSIONED_ON_UPLOAD);
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assertEquals(VS_NO_VERSIONED_ON_UPLOAD, vs.getUrl());
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assertNull(vs.getVersion());
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// current TermVSs with no upload version have null version
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Optional<TermValueSet> noUploadCurrentVsOpt = myITermReadSvc.findCurrentTermValueSet(VS_NO_VERSIONED_ON_UPLOAD);
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assertTrue(noUploadCurrentVsOpt.isPresent());
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@ -324,64 +481,50 @@ public class TerminologySvcImplCurrentVersionR4Test extends BaseJpaR4Test {
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Optional<TermValueSet> uploadCurrentVsOpt = myITermReadSvc.findCurrentTermValueSet(VS_VERSIONED_ON_UPLOAD);
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assertTrue(uploadCurrentVsOpt.isPresent());
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assertEquals(VS_ANSWER_LIST_VERSION, uploadCurrentVsOpt.get().getVersion());
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}
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@Test()
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public void uploadCSCurrentNoVersion() throws Exception {
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public void uploadCurrentNoVersion() throws Exception {
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IIdType csId = uploadLoincCodeSystem(null, true);
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runCommonValidations(null);
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// validate operation for current (no version parameter)
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validateOperations(Collections.emptySet());
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validateOperations(null, Collections.emptySet());
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}
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@Test()
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public void uploadCSCurrentWithVersion() throws Exception {
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public void uploadCurrentWithVersion() throws Exception {
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String ver = "2.67";
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IIdType csId = uploadLoincCodeSystem(ver, true);
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runCommonValidations(ver);
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|
||||
// myTermSvc.preExpandDeferredValueSetsToTerminologyTables();
|
||||
|
||||
// validate operation for specific version
|
||||
validateOperations(Collections.singleton(ver));
|
||||
validateOperations(ver, Collections.singleton(ver));
|
||||
}
|
||||
|
||||
|
||||
// @Test
|
||||
@Test
|
||||
public void uploadCurrentNoVersionThenNoCurrent() throws Exception {
|
||||
uploadLoincCodeSystem(null, true);
|
||||
|
||||
String ver = "2.67";
|
||||
uploadLoincCodeSystem(ver, false);
|
||||
|
||||
Optional<Long> csIdNoVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc");
|
||||
assertTrue(csIdNoVersionedOpt.isPresent());
|
||||
myTermSvc.preExpandDeferredValueSetsToTerminologyTables();
|
||||
|
||||
Optional<Long> csIdVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc" + "-" + ver);
|
||||
assertTrue(csIdVersionedOpt.isPresent());
|
||||
|
||||
// current CS data is no-ver
|
||||
CodeSystem codeSystem = myCodeSystemDao.read(new IdType("loinc"));
|
||||
String csString = myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(codeSystem);
|
||||
ourLog.info("CodeSystem:\n" + csString);
|
||||
|
||||
// no versions present in CS data
|
||||
possibleVersions.stream().forEach(vv -> assertFalse(csString.contains(vv)));
|
||||
|
||||
|
||||
// ValueSets
|
||||
|
||||
checkVsVersionExists(null);
|
||||
runCommonValidations(ver);
|
||||
|
||||
// validate operation for specific version
|
||||
validateOperations(null, Collections.singleton(ver));
|
||||
}
|
||||
|
||||
|
||||
// @Test
|
||||
@Test
|
||||
public void uploadFirstCurrentWithVersionThenNoCurrent() throws Exception {
|
||||
String firstVer = "2.67";
|
||||
uploadLoincCodeSystem(firstVer, true);
|
||||
|
|
@ -389,116 +532,52 @@ public class TerminologySvcImplCurrentVersionR4Test extends BaseJpaR4Test {
|
|||
String secondVer = "2.68";
|
||||
uploadLoincCodeSystem(secondVer, false);
|
||||
|
||||
Optional<Long> csIdNoVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc");
|
||||
assertTrue(csIdNoVersionedOpt.isPresent());
|
||||
runCommonValidations(firstVer);
|
||||
runCommonValidations(secondVer);
|
||||
|
||||
Optional<Long> csIdFirstVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc" + "-" + firstVer);
|
||||
assertTrue(csIdFirstVersionedOpt.isPresent());
|
||||
|
||||
Optional<Long> csIdSecondVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc" + "-" + secondVer);
|
||||
assertTrue(csIdSecondVersionedOpt.isPresent());
|
||||
|
||||
// current CS data is no-ver
|
||||
CodeSystem codeSystem = myCodeSystemDao.read(new IdType("loinc"));
|
||||
String csString = myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(codeSystem);
|
||||
ourLog.info("CodeSystem:\n" + csString);
|
||||
|
||||
// only 2.67 versions present in CS data
|
||||
Set<String> noVersionsPresent = new HashSet(possibleVersions);
|
||||
noVersionsPresent.remove(firstVer);
|
||||
noVersionsPresent.stream().forEach(vv -> assertFalse(csString.contains(vv)));
|
||||
|
||||
// ValueSets
|
||||
|
||||
checkVsVersionExists(firstVer);
|
||||
checkVsVersionExists(secondVer);
|
||||
|
||||
|
||||
|
||||
|
||||
// Optional<Long> csIdVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc" + "-" + "2.58");
|
||||
// assertFalse(csIdVersionedOpt.isPresent());
|
||||
//
|
||||
// Optional<Long> csIdNoVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc");
|
||||
// assertTrue(csIdNoVersionedOpt.isPresent());
|
||||
|
||||
// make sure:
|
||||
|
||||
// curr CS ver is null ver with 2.59 data
|
||||
|
||||
// VS present for V 2.58 (curr = true), 2,59 (curr = false) & null (curr = true)
|
||||
|
||||
// only one VS per url-ver true
|
||||
}
|
||||
|
||||
private void checkVsVersionExists(String ver) {
|
||||
String vsNoVersionedVersion = VS_NO_VERSIONED_ON_UPLOAD + (ver == null ? "" : "-" + ver);
|
||||
Optional<TermValueSet> noUploadVersionedVsOpt = myITermReadSvc.findCurrentTermValueSet(vsNoVersionedVersion);
|
||||
assertTrue(noUploadVersionedVsOpt.isPresent());
|
||||
assertNull(noUploadVersionedVsOpt.get().getVersion());
|
||||
|
||||
String vsersionedVersion = VS_VERSIONED_ON_UPLOAD + (ver == null ? "" : "-" + ver);
|
||||
Optional<TermValueSet> uploadVersionedVsOpt = myITermReadSvc.findCurrentTermValueSet(vsersionedVersion);
|
||||
assertTrue(uploadVersionedVsOpt.isPresent());
|
||||
assertEquals(VS_ANSWER_LIST_VERSION, uploadVersionedVsOpt.get().getVersion());
|
||||
// validate operation for specific version
|
||||
validateOperations(null, Lists.newArrayList(firstVer, secondVer));
|
||||
}
|
||||
|
||||
|
||||
// @Test
|
||||
@Test
|
||||
public void uploadFirstCurrentNoVersionThenNoCurrentThenCurrent() throws Exception {
|
||||
uploadLoincCodeSystem(null, true);
|
||||
uploadLoincCodeSystem("2.58", false);
|
||||
uploadLoincCodeSystem("2.59", true);
|
||||
|
||||
// Optional<Long> csIdVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc" + "-" + "2.58");
|
||||
// assertFalse(csIdVersionedOpt.isPresent());
|
||||
//
|
||||
// Optional<Long> csIdNoVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc");
|
||||
// assertTrue(csIdNoVersionedOpt.isPresent());
|
||||
String firstVer = "2.67";
|
||||
uploadLoincCodeSystem(firstVer, false);
|
||||
|
||||
// make sure:
|
||||
String secondVer = "2.68";
|
||||
uploadLoincCodeSystem(secondVer, true);
|
||||
|
||||
// curr CS ver is null ver with 2.59 data
|
||||
runCommonValidations(firstVer);
|
||||
runCommonValidations(secondVer);
|
||||
|
||||
// VS present for V 2.58 (curr = false), 2.59 (curr = true) & null (curr = true)
|
||||
|
||||
// only one VS per url-ver true
|
||||
// both curr = true have same data (2.59)
|
||||
// validate operation for specific version
|
||||
validateOperations(secondVer, Lists.newArrayList(firstVer, secondVer));
|
||||
}
|
||||
|
||||
|
||||
// @Test
|
||||
@Test
|
||||
public void uploadFirstCurrentWithVersionThenNoCurrentThenCurrent() throws Exception {
|
||||
uploadLoincCodeSystem("2.57", true);
|
||||
uploadLoincCodeSystem("2.58", false);
|
||||
uploadLoincCodeSystem("2.59", true);
|
||||
String firstVer = "2.67";
|
||||
uploadLoincCodeSystem(firstVer, true);
|
||||
|
||||
// Optional<Long> csIdVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc" + "-" + "2.58");
|
||||
// assertFalse(csIdVersionedOpt.isPresent());
|
||||
//
|
||||
// Optional<Long> csIdNoVersionedOpt = myForcedIdDao.findByTypeAndForcedId("CodeSystem", "loinc");
|
||||
// assertTrue(csIdNoVersionedOpt.isPresent());
|
||||
String secondVer = "2.68";
|
||||
uploadLoincCodeSystem(secondVer, false);
|
||||
|
||||
// make sure:
|
||||
String thirdVer = "2.68";
|
||||
uploadLoincCodeSystem(thirdVer, true);
|
||||
|
||||
// curr CS ver is null ver with 2.59 data
|
||||
runCommonValidations(firstVer);
|
||||
runCommonValidations(secondVer);
|
||||
runCommonValidations(thirdVer);
|
||||
|
||||
// VS present for V 2.57 (curr = false), 2.58 (curr = false), 2,59 (curr = true) & null (curr = true)
|
||||
|
||||
// both curr = true have same data (2.59)
|
||||
// validate operation for specific version
|
||||
validateOperations(thirdVer, Lists.newArrayList(firstVer, secondVer, thirdVer));
|
||||
}
|
||||
|
||||
|
||||
// @Test
|
||||
// public void testValidateCode() {
|
||||
// createCodeSystem();
|
||||
//
|
||||
// IValidationSupport.CodeValidationResult validation = myTermSvc.validateCode(new ValidationSupportContext(myValidationSupport), new ConceptValidationOptions(), CS_URL, "ParentWithNoChildrenA", null, null);
|
||||
// assertTrue(validation.isOk());
|
||||
//
|
||||
// validation = myTermSvc.validateCode(new ValidationSupportContext(myValidationSupport), new ConceptValidationOptions(), CS_URL, "ZZZZZZZ", null, null);
|
||||
// assertFalse(validation.isOk());
|
||||
// }
|
||||
|
||||
|
||||
private IIdType uploadLoincCodeSystem(String theVersion, boolean theMakeItCurrent) throws Exception {
|
||||
|
|
|
|||
|
|
@ -1,12 +1,12 @@
|
|||
"AnswerListId","AnswerListName" ,"AnswerListOID" ,"ExtDefinedYN","ExtDefinedAnswerListCodeSystem","ExtDefinedAnswerListLink" ,"AnswerStringId","LocalAnswerCode","LocalAnswerCodeSystem","SequenceNumber","DisplayText" ,"ExtCodeId","ExtCodeDisplayName" ,"ExtCodeSystem" ,"ExtCodeSystemVersion" ,"ExtCodeSystemCopyrightNotice" ,"SubsequentTextPrompt","Description","Score"
|
||||
"LL1000-0" ,"v2.67 PhenX05_13_30D bread amt","1.3.6.1.4.1.12009.10.1.165" ,"N" , , ,"LA13825-7" ,"1" , ,1 ,"1 slice or 1 dinner roll" , , , , , , , ,
|
||||
"LL1000-0" ,"v2.67 PhenX05_13_30D bread amt","1.3.6.1.4.1.12009.10.1.165" ,"N" , , ,"LA13838-0" ,"2" , ,2 ,"2 slices or 2 dinner rolls" , , , , , , , ,
|
||||
"LL1000-0" ,"v2.67 PhenX05_13_30D bread amt","1.3.6.1.4.1.12009.10.1.165" ,"N" , , ,"LA13892-7" ,"3" , ,3 ,"More than 2 slices or 2 dinner rolls", , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA6270-8" ,"00" , ,1 ,"Never" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA13836-4" ,"01" , ,2 ,"1-3 times per month" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA13834-9" ,"02" , ,3 ,"1-2 times per week" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA13853-9" ,"03" , ,4 ,"3-4 times per week" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA13860-4" ,"04" , ,5 ,"5-6 times per week" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA13827-3" ,"05" , ,6 ,"1 time per day" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA4389-8" ,"97" , ,11 ,"Refused" ,"443390004","Refused (qualifier value)","http://snomed.info/sct","http://snomed.info/sct/900000000000207008/version/20170731","This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College", , ,
|
||||
"LL1000-0" ,"v2.67 PhenX05_13_30D bread amt","1.3.6.1.4.1.12009.10.1.165" ,"N" , , ,"LA13825-7" ,"1" , ,1 ,"v2.67 1 slice or 1 dinner roll" , , , , , , , ,
|
||||
"LL1000-0" ,"v2.67 PhenX05_13_30D bread amt","1.3.6.1.4.1.12009.10.1.165" ,"N" , , ,"LA13838-0" ,"2" , ,2 ,"v2.67 2 slices or 2 dinner rolls" , , , , , , , ,
|
||||
"LL1000-0" ,"v2.67 PhenX05_13_30D bread amt","1.3.6.1.4.1.12009.10.1.165" ,"N" , , ,"LA13892-7" ,"3" , ,3 ,"v2.67 More than 2 slices or 2 dinner rolls", , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA6270-8" ,"00" , ,1 ,"v2.67 Never" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA13836-4" ,"01" , ,2 ,"v2.67 1-3 times per month" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA13834-9" ,"02" , ,3 ,"v2.67 1-2 times per week" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA13853-9" ,"03" , ,4 ,"v2.67 3-4 times per week" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA13860-4" ,"04" , ,5 ,"v2.67 5-6 times per week" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA13827-3" ,"05" , ,6 ,"v2.67 1 time per day" , , , , , , , ,
|
||||
"LL1001-8" ,"v2.67 PhenX05_14_30D freq amts","1.3.6.1.4.1.12009.10.1.166" ,"N" , , ,"LA4389-8" ,"97" , ,11 ,"v2.67 Refused" ,"443390004","Refused (qualifier value)","http://snomed.info/sct","http://snomed.info/sct/900000000000207008/version/20170731","This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College", , ,
|
||||
"LL1892-0" ,"v2.67 ICD-9_ICD-10" ,"1.3.6.1.4.1.12009.10.1.1069","Y" , ,"http://www.cdc.gov/nchs/icd.htm", , , , , , , , , , , , ,
|
||||
|
|
|
|||
|
Can't render this file because it contains an unexpected character in line 1 and column 31.
|
|
|
@ -1,6 +1,6 @@
|
|||
"LOINC_NUM","LONG_COMMON_NAME"
|
||||
"11525-3","US Pelvis Fetus for pregnancy"
|
||||
"17787-3","NM Thyroid gland Study report"
|
||||
"17787-3","v2.67 NM Thyroid gland Study report"
|
||||
"18744-3","Bronchoscopy study"
|
||||
"18746-8","Colonoscopy study"
|
||||
"18748-4","Diagnostic imaging study"
|
||||
|
|
|
|||
|
|
|
@ -10,7 +10,7 @@
|
|||
"10020-6" ,"R' wave amplitude.lead V5" ,"Elpot" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; ECG; EKG.MEASUREMENTS; Electrical potential; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave Amp L-V5; R wave Amp L-V5; Random; Right; Voltage" ,"R' wave Amp L-V5" ,"Observation", , , ,"mV" ,"R' wave amplitude in lead V5" , , ,"mV" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"61438-8" ,"Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30D","Find" ,"Pt" ,"^Patient" ,"Ord" ,"PhenX" ,"PHENX" ,"2.44" ,"MIN" , ,"TRIAL" , ,2 , , , ,"Each time you eat bread, toast or dinner rolls, how much do you usually eat?","PhenX.050201100100","N" , ,"Finding; Findings; How much bread in 30D; Last; Ordinal; Point in time; QL; Qual; Qualitative; Random; Screen" ,"How much bread in 30D PhenX", , , , , ,"Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30 days [PhenX]", , , , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"10000-8" ,"R wave duration.lead AVR" ,"Time" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-AVR; R wave dur L-AVR; Random; Right" ,"R wave dur L-AVR" ,"Observation", , , ,"s" ,"R wave duration in lead AVR" , , ,"s" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"17787-3" ,"Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17787-3" ,"Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"v2.67 NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17788-1" ,"Large unstained cells/100 leukocytes" ,"NFr" ,"Pt" ,"Bld" ,"Qn" ,"Automated count","HEM/BC" ,"2.50" ,"MIN" ,"Part of auto diff output of Bayer H*3S; peroxidase negative cells too large to be classified as lymph or basophil" ,"ACTIVE", ,1 , , , , , ,"Y" ,"%" ,"100WBC; Auto; Automated detection; Blood; Cell; Cellularity; Elec; Elect; Electr; HEMATOLOGY/CELL COUNTS; Leuc; Leuk; Leukocyte; Lkcs; LUC; Number Fraction; Percent; Point in time; QNT; Quan; Quant; Quantitative; Random; WB; WBC; WBCs; White blood cell; White blood cells; Whole blood" ,"LUC/leuk NFr Bld Auto" ,"Observation", , , ,"%" ,"Large unstained cells/100 leukocytes in Blood by Automated count" , , ,"%" , , , , ,1894 ,0 ,1894 , , , , , ,"1.0l" ,
|
||||
"11488-4" ,"Consultation note" ,"Find" ,"Pt" ,"{Setting}" ,"Doc" ,"{Role}" ,"DOC.ONTOLOGY","2.63" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Consult note; DOC.ONT; Document; Encounter; Evaluation and management; Evaluation and management note; Finding; Findings; notes; Point in time; Random; Visit note" ,"Consult note" ,"Both" , , , , ,"Consult note" , , , , , , ,"Edit made because this term is conformant to the Document Ontology axis values and therefore are being placed in this class.; Based on Clinical LOINC Committee decision during the September 2014 meeting, {Provider} was changed to {Author Type} to emphasize a greater breadth of potential document authors. At the September 2015 Clinical LOINC Committee meeting, the Committee decided to change {Author Type} to {Role} to align with the 'Role' axis name in the LOINC Document Ontology.; Because it is too difficult to maintain and because the distinction between documents and sections is not clear-cut nor necessary in most cases, the DOCUMENT_SECTION field has been deemed to have little value. The field has been set to null in the December 2017 release in preparation for removal in the December 2018 release. These changes were approved by the Clinical LOINC Committee.",0 ,0 ,0 ,"IG exists" , , , ,"81222-2;72231-4;81243-8","1.0j-a" ,"Y"
|
||||
"47239-9" ,"Reason for stopping HIV Rx" ,"Type" ,"Pt" ,"^Patient" ,"Nom" ,"Reported" ,"ART" ,"2.50" ,"MIN" ,"Reason for stopping antiretroviral therapy" ,"ACTIVE", ,2 , , , , , ,"N" , ,"AIDS; Anti-retroviral therapy; ART; Human immunodeficiency virus; Nominal; Point in time; Random; Treatment; Typ" ,"Reason for stopping HIV Rx" ,"Observation", , ,"Copyright © 2006 World Health Organization. Used with permission. Publications of the World Health Organization can be obtained from WHO Press, World Health Organization, 20 Avenue Appia, 1211 Geneva 27, Switzerland (tel: +41 22 791 2476; fax: +41 22 791 4857; email: bookorders@who.int). Requests for permission to reproduce or translate WHO publications – whether for sale or for noncommercial distribution – should be addressed to WHO Press, at the above address (fax: +41 22 791 4806; email: permissions@who.int). The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or of certain manufacturers’ products does not imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. All reasonable precautions have been taken by WHO to verify the information contained in this publication. However, the published material is being distributed without warranty of any kind, either express or implied. The responsibility for the interpretation and use of the material lies with the reader. In no event shall the World Health Organization be liable for damages arising from its use.", ,"Reason for stopping HIV treatment" , , , , , , , ,0 ,0 ,0 , ,"WHO_HIV" , , , ,"2.22" ,
|
||||
|
|
|
|||
|
Can't render this file because it contains an unexpected character in line 1 and column 23.
|
|
|
@ -10,7 +10,7 @@
|
|||
"10020-6" ,"v2.67 R' wave amplitude.lead V5" ,"Elpot" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; ECG; EKG.MEASUREMENTS; Electrical potential; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave Amp L-V5; R wave Amp L-V5; Random; Right; Voltage" ,"R' wave Amp L-V5" ,"Observation", , , ,"mV" ,"R' wave amplitude in lead V5" , , ,"mV" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"61438-8" ,"v2.67 Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30D","Find" ,"Pt" ,"^Patient" ,"Ord" ,"PhenX" ,"PHENX" ,"2.44" ,"MIN" , ,"TRIAL" , ,2 , , , ,"Each time you eat bread, toast or dinner rolls, how much do you usually eat?","PhenX.050201100100","N" , ,"Finding; Findings; How much bread in 30D; Last; Ordinal; Point in time; QL; Qual; Qualitative; Random; Screen" ,"How much bread in 30D PhenX", , , , , ,"Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30 days [PhenX]", , , , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"10000-8" ,"v2.67 R wave duration.lead AVR" ,"Time" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-AVR; R wave dur L-AVR; Random; Right" ,"R wave dur L-AVR" ,"Observation", , , ,"s" ,"R wave duration in lead AVR" , , ,"s" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"17787-3" ,"v2.67 Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17787-3" ,"v2.67 Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"v2.67 NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17788-1" ,"v2.67 Large unstained cells/100 leukocytes" ,"NFr" ,"Pt" ,"Bld" ,"Qn" ,"Automated count","HEM/BC" ,"2.50" ,"MIN" ,"Part of auto diff output of Bayer H*3S; peroxidase negative cells too large to be classified as lymph or basophil" ,"ACTIVE", ,1 , , , , , ,"Y" ,"%" ,"100WBC; Auto; Automated detection; Blood; Cell; Cellularity; Elec; Elect; Electr; HEMATOLOGY/CELL COUNTS; Leuc; Leuk; Leukocyte; Lkcs; LUC; Number Fraction; Percent; Point in time; QNT; Quan; Quant; Quantitative; Random; WB; WBC; WBCs; White blood cell; White blood cells; Whole blood" ,"LUC/leuk NFr Bld Auto" ,"Observation", , , ,"%" ,"Large unstained cells/100 leukocytes in Blood by Automated count" , , ,"%" , , , , ,1894 ,0 ,1894 , , , , , ,"1.0l" ,
|
||||
"11488-4" ,"v2.67 Consultation note" ,"Find" ,"Pt" ,"{Setting}" ,"Doc" ,"{Role}" ,"DOC.ONTOLOGY","2.63" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Consult note; DOC.ONT; Document; Encounter; Evaluation and management; Evaluation and management note; Finding; Findings; notes; Point in time; Random; Visit note" ,"Consult note" ,"Both" , , , , ,"Consult note" , , , , , , ,"Edit made because this term is conformant to the Document Ontology axis values and therefore are being placed in this class.; Based on Clinical LOINC Committee decision during the September 2014 meeting, {Provider} was changed to {Author Type} to emphasize a greater breadth of potential document authors. At the September 2015 Clinical LOINC Committee meeting, the Committee decided to change {Author Type} to {Role} to align with the 'Role' axis name in the LOINC Document Ontology.; Because it is too difficult to maintain and because the distinction between documents and sections is not clear-cut nor necessary in most cases, the DOCUMENT_SECTION field has been deemed to have little value. The field has been set to null in the December 2017 release in preparation for removal in the December 2018 release. These changes were approved by the Clinical LOINC Committee.",0 ,0 ,0 ,"IG exists" , , , ,"81222-2;72231-4;81243-8","1.0j-a" ,"Y"
|
||||
"47239-9" ,"v2.67 Reason for stopping HIV Rx" ,"Type" ,"Pt" ,"^Patient" ,"Nom" ,"Reported" ,"ART" ,"2.50" ,"MIN" ,"Reason for stopping antiretroviral therapy" ,"ACTIVE", ,2 , , , , , ,"N" , ,"AIDS; Anti-retroviral therapy; ART; Human immunodeficiency virus; Nominal; Point in time; Random; Treatment; Typ" ,"Reason for stopping HIV Rx" ,"Observation", , ,"Copyright © 2006 World Health Organization. Used with permission. Publications of the World Health Organization can be obtained from WHO Press, World Health Organization, 20 Avenue Appia, 1211 Geneva 27, Switzerland (tel: +41 22 791 2476; fax: +41 22 791 4857; email: bookorders@who.int). Requests for permission to reproduce or translate WHO publications – whether for sale or for noncommercial distribution – should be addressed to WHO Press, at the above address (fax: +41 22 791 4806; email: permissions@who.int). The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or of certain manufacturers’ products does not imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. All reasonable precautions have been taken by WHO to verify the information contained in this publication. However, the published material is being distributed without warranty of any kind, either express or implied. The responsibility for the interpretation and use of the material lies with the reader. In no event shall the World Health Organization be liable for damages arising from its use.", ,"Reason for stopping HIV treatment" , , , , , , , ,0 ,0 ,0 , ,"WHO_HIV" , , , ,"2.22" ,
|
||||
|
|
|
|||
|
Can't render this file because it contains an unexpected character in line 1 and column 23.
|
|
|
@ -1,6 +1,6 @@
|
|||
"LOINC_NUM","LONG_COMMON_NAME"
|
||||
"11525-3","US Pelvis Fetus for pregnancy"
|
||||
"17787-3","NM Thyroid gland Study report"
|
||||
"17787-3","v2.68 NM Thyroid gland Study report"
|
||||
"18744-3","Bronchoscopy study"
|
||||
"18746-8","Colonoscopy study"
|
||||
"18748-4","Diagnostic imaging study"
|
||||
|
|
|
|||
|
|
|
@ -10,7 +10,7 @@
|
|||
"10020-6" ,"R' wave amplitude.lead V5" ,"Elpot" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; ECG; EKG.MEASUREMENTS; Electrical potential; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave Amp L-V5; R wave Amp L-V5; Random; Right; Voltage" ,"R' wave Amp L-V5" ,"Observation", , , ,"mV" ,"R' wave amplitude in lead V5" , , ,"mV" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"61438-8" ,"Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30D","Find" ,"Pt" ,"^Patient" ,"Ord" ,"PhenX" ,"PHENX" ,"2.44" ,"MIN" , ,"TRIAL" , ,2 , , , ,"Each time you eat bread, toast or dinner rolls, how much do you usually eat?","PhenX.050201100100","N" , ,"Finding; Findings; How much bread in 30D; Last; Ordinal; Point in time; QL; Qual; Qualitative; Random; Screen" ,"How much bread in 30D PhenX", , , , , ,"Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30 days [PhenX]", , , , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"10000-8" ,"R wave duration.lead AVR" ,"Time" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-AVR; R wave dur L-AVR; Random; Right" ,"R wave dur L-AVR" ,"Observation", , , ,"s" ,"R wave duration in lead AVR" , , ,"s" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"17787-3" ,"Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17787-3" ,"Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"v2.68 NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17788-1" ,"Large unstained cells/100 leukocytes" ,"NFr" ,"Pt" ,"Bld" ,"Qn" ,"Automated count","HEM/BC" ,"2.50" ,"MIN" ,"Part of auto diff output of Bayer H*3S; peroxidase negative cells too large to be classified as lymph or basophil" ,"ACTIVE", ,1 , , , , , ,"Y" ,"%" ,"100WBC; Auto; Automated detection; Blood; Cell; Cellularity; Elec; Elect; Electr; HEMATOLOGY/CELL COUNTS; Leuc; Leuk; Leukocyte; Lkcs; LUC; Number Fraction; Percent; Point in time; QNT; Quan; Quant; Quantitative; Random; WB; WBC; WBCs; White blood cell; White blood cells; Whole blood" ,"LUC/leuk NFr Bld Auto" ,"Observation", , , ,"%" ,"Large unstained cells/100 leukocytes in Blood by Automated count" , , ,"%" , , , , ,1894 ,0 ,1894 , , , , , ,"1.0l" ,
|
||||
"11488-4" ,"Consultation note" ,"Find" ,"Pt" ,"{Setting}" ,"Doc" ,"{Role}" ,"DOC.ONTOLOGY","2.63" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Consult note; DOC.ONT; Document; Encounter; Evaluation and management; Evaluation and management note; Finding; Findings; notes; Point in time; Random; Visit note" ,"Consult note" ,"Both" , , , , ,"Consult note" , , , , , , ,"Edit made because this term is conformant to the Document Ontology axis values and therefore are being placed in this class.; Based on Clinical LOINC Committee decision during the September 2014 meeting, {Provider} was changed to {Author Type} to emphasize a greater breadth of potential document authors. At the September 2015 Clinical LOINC Committee meeting, the Committee decided to change {Author Type} to {Role} to align with the 'Role' axis name in the LOINC Document Ontology.; Because it is too difficult to maintain and because the distinction between documents and sections is not clear-cut nor necessary in most cases, the DOCUMENT_SECTION field has been deemed to have little value. The field has been set to null in the December 2017 release in preparation for removal in the December 2018 release. These changes were approved by the Clinical LOINC Committee.",0 ,0 ,0 ,"IG exists" , , , ,"81222-2;72231-4;81243-8","1.0j-a" ,"Y"
|
||||
"47239-9" ,"Reason for stopping HIV Rx" ,"Type" ,"Pt" ,"^Patient" ,"Nom" ,"Reported" ,"ART" ,"2.50" ,"MIN" ,"Reason for stopping antiretroviral therapy" ,"ACTIVE", ,2 , , , , , ,"N" , ,"AIDS; Anti-retroviral therapy; ART; Human immunodeficiency virus; Nominal; Point in time; Random; Treatment; Typ" ,"Reason for stopping HIV Rx" ,"Observation", , ,"Copyright © 2006 World Health Organization. Used with permission. Publications of the World Health Organization can be obtained from WHO Press, World Health Organization, 20 Avenue Appia, 1211 Geneva 27, Switzerland (tel: +41 22 791 2476; fax: +41 22 791 4857; email: bookorders@who.int). Requests for permission to reproduce or translate WHO publications – whether for sale or for noncommercial distribution – should be addressed to WHO Press, at the above address (fax: +41 22 791 4806; email: permissions@who.int). The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or of certain manufacturers’ products does not imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. All reasonable precautions have been taken by WHO to verify the information contained in this publication. However, the published material is being distributed without warranty of any kind, either express or implied. The responsibility for the interpretation and use of the material lies with the reader. In no event shall the World Health Organization be liable for damages arising from its use.", ,"Reason for stopping HIV treatment" , , , , , , , ,0 ,0 ,0 , ,"WHO_HIV" , , , ,"2.22" ,
|
||||
|
|
|
|||
|
Can't render this file because it contains an unexpected character in line 1 and column 23.
|
|
|
@ -10,7 +10,7 @@
|
|||
"10020-6" ,"v2.68 R' wave amplitude.lead V5" ,"Elpot" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; ECG; EKG.MEASUREMENTS; Electrical potential; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave Amp L-V5; R wave Amp L-V5; Random; Right; Voltage" ,"R' wave Amp L-V5" ,"Observation", , , ,"mV" ,"R' wave amplitude in lead V5" , , ,"mV" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"61438-8" ,"v2.68 Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30D","Find" ,"Pt" ,"^Patient" ,"Ord" ,"PhenX" ,"PHENX" ,"2.44" ,"MIN" , ,"TRIAL" , ,2 , , , ,"Each time you eat bread, toast or dinner rolls, how much do you usually eat?","PhenX.050201100100","N" , ,"Finding; Findings; How much bread in 30D; Last; Ordinal; Point in time; QL; Qual; Qualitative; Random; Screen" ,"How much bread in 30D PhenX", , , , , ,"Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30 days [PhenX]", , , , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"10000-8" ,"v2.68 R wave duration.lead AVR" ,"Time" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-AVR; R wave dur L-AVR; Random; Right" ,"R wave dur L-AVR" ,"Observation", , , ,"s" ,"R wave duration in lead AVR" , , ,"s" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"17787-3" ,"v2.68 Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17787-3" ,"v2.68 Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"v2.68 NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17788-1" ,"v2.68 Large unstained cells/100 leukocytes" ,"NFr" ,"Pt" ,"Bld" ,"Qn" ,"Automated count","HEM/BC" ,"2.50" ,"MIN" ,"Part of auto diff output of Bayer H*3S; peroxidase negative cells too large to be classified as lymph or basophil" ,"ACTIVE", ,1 , , , , , ,"Y" ,"%" ,"100WBC; Auto; Automated detection; Blood; Cell; Cellularity; Elec; Elect; Electr; HEMATOLOGY/CELL COUNTS; Leuc; Leuk; Leukocyte; Lkcs; LUC; Number Fraction; Percent; Point in time; QNT; Quan; Quant; Quantitative; Random; WB; WBC; WBCs; White blood cell; White blood cells; Whole blood" ,"LUC/leuk NFr Bld Auto" ,"Observation", , , ,"%" ,"Large unstained cells/100 leukocytes in Blood by Automated count" , , ,"%" , , , , ,1894 ,0 ,1894 , , , , , ,"1.0l" ,
|
||||
"11488-4" ,"v2.68 Consultation note" ,"Find" ,"Pt" ,"{Setting}" ,"Doc" ,"{Role}" ,"DOC.ONTOLOGY","2.63" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Consult note; DOC.ONT; Document; Encounter; Evaluation and management; Evaluation and management note; Finding; Findings; notes; Point in time; Random; Visit note" ,"Consult note" ,"Both" , , , , ,"Consult note" , , , , , , ,"Edit made because this term is conformant to the Document Ontology axis values and therefore are being placed in this class.; Based on Clinical LOINC Committee decision during the September 2014 meeting, {Provider} was changed to {Author Type} to emphasize a greater breadth of potential document authors. At the September 2015 Clinical LOINC Committee meeting, the Committee decided to change {Author Type} to {Role} to align with the 'Role' axis name in the LOINC Document Ontology.; Because it is too difficult to maintain and because the distinction between documents and sections is not clear-cut nor necessary in most cases, the DOCUMENT_SECTION field has been deemed to have little value. The field has been set to null in the December 2017 release in preparation for removal in the December 2018 release. These changes were approved by the Clinical LOINC Committee.",0 ,0 ,0 ,"IG exists" , , , ,"81222-2;72231-4;81243-8","1.0j-a" ,"Y"
|
||||
"47239-9" ,"v2.68 Reason for stopping HIV Rx" ,"Type" ,"Pt" ,"^Patient" ,"Nom" ,"Reported" ,"ART" ,"2.50" ,"MIN" ,"Reason for stopping antiretroviral therapy" ,"ACTIVE", ,2 , , , , , ,"N" , ,"AIDS; Anti-retroviral therapy; ART; Human immunodeficiency virus; Nominal; Point in time; Random; Treatment; Typ" ,"Reason for stopping HIV Rx" ,"Observation", , ,"Copyright © 2006 World Health Organization. Used with permission. Publications of the World Health Organization can be obtained from WHO Press, World Health Organization, 20 Avenue Appia, 1211 Geneva 27, Switzerland (tel: +41 22 791 2476; fax: +41 22 791 4857; email: bookorders@who.int). Requests for permission to reproduce or translate WHO publications – whether for sale or for noncommercial distribution – should be addressed to WHO Press, at the above address (fax: +41 22 791 4806; email: permissions@who.int). The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or of certain manufacturers’ products does not imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. All reasonable precautions have been taken by WHO to verify the information contained in this publication. However, the published material is being distributed without warranty of any kind, either express or implied. The responsibility for the interpretation and use of the material lies with the reader. In no event shall the World Health Organization be liable for damages arising from its use.", ,"Reason for stopping HIV treatment" , , , , , , , ,0 ,0 ,0 , ,"WHO_HIV" , , , ,"2.22" ,
|
||||
|
|
|
|||
|
Can't render this file because it contains an unexpected character in line 1 and column 23.
|
|
|
@ -1,6 +1,6 @@
|
|||
"LOINC_NUM","LONG_COMMON_NAME"
|
||||
"11525-3","US Pelvis Fetus for pregnancy"
|
||||
"17787-3","NM Thyroid gland Study report"
|
||||
"17787-3","v2.69 NM Thyroid gland Study report"
|
||||
"18744-3","Bronchoscopy study"
|
||||
"18746-8","Colonoscopy study"
|
||||
"18748-4","Diagnostic imaging study"
|
||||
|
|
|
|||
|
|
|
@ -1,10 +1,10 @@
|
|||
"LoincNumber","LongCommonName" ,"PartNumber","PartTypeName" ,"PartName" ,"PartSequenceOrder","RID" ,"PreferredName" ,"RPID" ,"LongName"
|
||||
"17787-3" ,"v2.68 NM Thyroid gland Study report","LP199995-4","Rad.Anatomic Location.Region Imaged","Neck" ,"A" ,"RID7488" ,"neck" ,"" ,""
|
||||
"17787-3" ,"v2.68 NM Thyroid gland Study report","LP206648-0","Rad.Anatomic Location.Imaging Focus","Thyroid gland" ,"A" ,"RID7578" ,"thyroid gland" ,"" ,""
|
||||
"17787-3" ,"v2.68 NM Thyroid gland Study report","LP208891-4","Rad.Modality.Modality type" ,"NM" ,"A" ,"RID10330","nuclear medicine imaging","" ,""
|
||||
"24531-6" ,"v2.68 US Retroperitoneum" ,"LP207608-3","Rad.Modality.Modality type" ,"US" ,"A" ,"RID10326","Ultrasound" ,"RPID2142","US Retroperitoneum"
|
||||
"24531-6" ,"v2.68 US Retroperitoneum" ,"LP199943-4","Rad.Anatomic Location.Imaging Focus","Retroperitoneum" ,"A" ,"RID431" ,"RETROPERITONEUM" ,"RPID2142","US Retroperitoneum"
|
||||
"24531-6" ,"v2.68 US Retroperitoneum" ,"LP199956-6","Rad.Anatomic Location.Region Imaged","Abdomen" ,"A" ,"RID56" ,"Abdomen" ,"RPID2142","US Retroperitoneum"
|
||||
"24532-4" ,"v2.68 US Abdomen RUQ" ,"LP199956-6","Rad.Anatomic Location.Region Imaged","Abdomen" ,"A" ,"RID56" ,"Abdomen" ,"" ,""
|
||||
"24532-4" ,"v2.68 US Abdomen RUQ" ,"LP207608-3","Rad.Modality.Modality type" ,"US" ,"A" ,"RID10326","Ultrasound" ,"" ,""
|
||||
"24532-4" ,"v2.68 US Abdomen RUQ" ,"LP208105-9","Rad.Anatomic Location.Imaging Focus","Right upper quadrant","A" ,"RID29994","Right upper quadrant" ,"" ,""
|
||||
"17787-3" ,"v2.69 NM Thyroid gland Study report","LP199995-4","Rad.Anatomic Location.Region Imaged","Neck" ,"A" ,"RID7488" ,"neck" ,"" ,""
|
||||
"17787-3" ,"v2.69 NM Thyroid gland Study report","LP206648-0","Rad.Anatomic Location.Imaging Focus","Thyroid gland" ,"A" ,"RID7578" ,"thyroid gland" ,"" ,""
|
||||
"17787-3" ,"v2.69 NM Thyroid gland Study report","LP208891-4","Rad.Modality.Modality type" ,"NM" ,"A" ,"RID10330","nuclear medicine imaging","" ,""
|
||||
"24531-6" ,"v2.69 US Retroperitoneum" ,"LP207608-3","Rad.Modality.Modality type" ,"US" ,"A" ,"RID10326","Ultrasound" ,"RPID2142","US Retroperitoneum"
|
||||
"24531-6" ,"v2.69 US Retroperitoneum" ,"LP199943-4","Rad.Anatomic Location.Imaging Focus","Retroperitoneum" ,"A" ,"RID431" ,"RETROPERITONEUM" ,"RPID2142","US Retroperitoneum"
|
||||
"24531-6" ,"v2.69 US Retroperitoneum" ,"LP199956-6","Rad.Anatomic Location.Region Imaged","Abdomen" ,"A" ,"RID56" ,"Abdomen" ,"RPID2142","US Retroperitoneum"
|
||||
"24532-4" ,"v2.69 US Abdomen RUQ" ,"LP199956-6","Rad.Anatomic Location.Region Imaged","Abdomen" ,"A" ,"RID56" ,"Abdomen" ,"" ,""
|
||||
"24532-4" ,"v2.69 US Abdomen RUQ" ,"LP207608-3","Rad.Modality.Modality type" ,"US" ,"A" ,"RID10326","Ultrasound" ,"" ,""
|
||||
"24532-4" ,"v2.69 US Abdomen RUQ" ,"LP208105-9","Rad.Anatomic Location.Imaging Focus","Right upper quadrant","A" ,"RID29994","Right upper quadrant" ,"" ,""
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"10020-6" ,"R' wave amplitude.lead V5" ,"Elpot" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; ECG; EKG.MEASUREMENTS; Electrical potential; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave Amp L-V5; R wave Amp L-V5; Random; Right; Voltage" ,"R' wave Amp L-V5" ,"Observation", , , ,"mV" ,"R' wave amplitude in lead V5" , , ,"mV" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"61438-8" ,"Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30D","Find" ,"Pt" ,"^Patient" ,"Ord" ,"PhenX" ,"PHENX" ,"2.44" ,"MIN" , ,"TRIAL" , ,2 , , , ,"Each time you eat bread, toast or dinner rolls, how much do you usually eat?","PhenX.050201100100","N" , ,"Finding; Findings; How much bread in 30D; Last; Ordinal; Point in time; QL; Qual; Qualitative; Random; Screen" ,"How much bread in 30D PhenX", , , , , ,"Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30 days [PhenX]", , , , , , , ,0 ,0 ,0 , , , , , , ,
|
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"10000-8" ,"R wave duration.lead AVR" ,"Time" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-AVR; R wave dur L-AVR; Random; Right" ,"R wave dur L-AVR" ,"Observation", , , ,"s" ,"R wave duration in lead AVR" , , ,"s" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"17787-3" ,"Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17787-3" ,"Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"v2.69 NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17788-1" ,"Large unstained cells/100 leukocytes" ,"NFr" ,"Pt" ,"Bld" ,"Qn" ,"Automated count","HEM/BC" ,"2.50" ,"MIN" ,"Part of auto diff output of Bayer H*3S; peroxidase negative cells too large to be classified as lymph or basophil" ,"ACTIVE", ,1 , , , , , ,"Y" ,"%" ,"100WBC; Auto; Automated detection; Blood; Cell; Cellularity; Elec; Elect; Electr; HEMATOLOGY/CELL COUNTS; Leuc; Leuk; Leukocyte; Lkcs; LUC; Number Fraction; Percent; Point in time; QNT; Quan; Quant; Quantitative; Random; WB; WBC; WBCs; White blood cell; White blood cells; Whole blood" ,"LUC/leuk NFr Bld Auto" ,"Observation", , , ,"%" ,"Large unstained cells/100 leukocytes in Blood by Automated count" , , ,"%" , , , , ,1894 ,0 ,1894 , , , , , ,"1.0l" ,
|
||||
"11488-4" ,"Consultation note" ,"Find" ,"Pt" ,"{Setting}" ,"Doc" ,"{Role}" ,"DOC.ONTOLOGY","2.63" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Consult note; DOC.ONT; Document; Encounter; Evaluation and management; Evaluation and management note; Finding; Findings; notes; Point in time; Random; Visit note" ,"Consult note" ,"Both" , , , , ,"Consult note" , , , , , , ,"Edit made because this term is conformant to the Document Ontology axis values and therefore are being placed in this class.; Based on Clinical LOINC Committee decision during the September 2014 meeting, {Provider} was changed to {Author Type} to emphasize a greater breadth of potential document authors. At the September 2015 Clinical LOINC Committee meeting, the Committee decided to change {Author Type} to {Role} to align with the 'Role' axis name in the LOINC Document Ontology.; Because it is too difficult to maintain and because the distinction between documents and sections is not clear-cut nor necessary in most cases, the DOCUMENT_SECTION field has been deemed to have little value. The field has been set to null in the December 2017 release in preparation for removal in the December 2018 release. These changes were approved by the Clinical LOINC Committee.",0 ,0 ,0 ,"IG exists" , , , ,"81222-2;72231-4;81243-8","1.0j-a" ,"Y"
|
||||
"47239-9" ,"Reason for stopping HIV Rx" ,"Type" ,"Pt" ,"^Patient" ,"Nom" ,"Reported" ,"ART" ,"2.50" ,"MIN" ,"Reason for stopping antiretroviral therapy" ,"ACTIVE", ,2 , , , , , ,"N" , ,"AIDS; Anti-retroviral therapy; ART; Human immunodeficiency virus; Nominal; Point in time; Random; Treatment; Typ" ,"Reason for stopping HIV Rx" ,"Observation", , ,"Copyright © 2006 World Health Organization. Used with permission. Publications of the World Health Organization can be obtained from WHO Press, World Health Organization, 20 Avenue Appia, 1211 Geneva 27, Switzerland (tel: +41 22 791 2476; fax: +41 22 791 4857; email: bookorders@who.int). Requests for permission to reproduce or translate WHO publications – whether for sale or for noncommercial distribution – should be addressed to WHO Press, at the above address (fax: +41 22 791 4806; email: permissions@who.int). The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or of certain manufacturers’ products does not imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. All reasonable precautions have been taken by WHO to verify the information contained in this publication. However, the published material is being distributed without warranty of any kind, either express or implied. The responsibility for the interpretation and use of the material lies with the reader. In no event shall the World Health Organization be liable for damages arising from its use.", ,"Reason for stopping HIV treatment" , , , , , , , ,0 ,0 ,0 , ,"WHO_HIV" , , , ,"2.22" ,
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"10020-6" ,"v2.69 R' wave amplitude.lead V5" ,"Elpot" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; ECG; EKG.MEASUREMENTS; Electrical potential; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave Amp L-V5; R wave Amp L-V5; Random; Right; Voltage" ,"R' wave Amp L-V5" ,"Observation", , , ,"mV" ,"R' wave amplitude in lead V5" , , ,"mV" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"61438-8" ,"v2.69 Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30D","Find" ,"Pt" ,"^Patient" ,"Ord" ,"PhenX" ,"PHENX" ,"2.44" ,"MIN" , ,"TRIAL" , ,2 , , , ,"Each time you eat bread, toast or dinner rolls, how much do you usually eat?","PhenX.050201100100","N" , ,"Finding; Findings; How much bread in 30D; Last; Ordinal; Point in time; QL; Qual; Qualitative; Random; Screen" ,"How much bread in 30D PhenX", , , , , ,"Each time you ate bread, toast or dinner rolls, how much did you usually eat in the past 30 days [PhenX]", , , , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"10000-8" ,"v2.69 R wave duration.lead AVR" ,"Time" ,"Pt" ,"Heart" ,"Qn" ,"EKG" ,"EKG.MEAS" ,"2.48" ,"MIN" , ,"ACTIVE", ,2 , , , , , ,"Y" , ,"Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-AVR; R wave dur L-AVR; Random; Right" ,"R wave dur L-AVR" ,"Observation", , , ,"s" ,"R wave duration in lead AVR" , , ,"s" , , , , ,0 ,0 ,0 , , , , , , ,
|
||||
"17787-3" ,"v2.69 Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17787-3" ,"v2.69 Study report" ,"Find" ,"Pt" ,"Neck>Thyroid gland","Doc" ,"NM" ,"RAD" ,"2.61" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Document; Finding; Findings; Imaging; Point in time; Radiology; Random; Study report; Thy" ,"NM Thyroid Study report" ,"Both" , , , , ,"v2.69 NM Thyroid gland Study report" , , , , , , ,"Changed System from ""Thyroid"" for conformance with the LOINC/RadLex unified model.; Method of ""Radnuc"" was changed to ""NM"". The LOINC/RadLex Committee agreed to use a subset of the two-letter DICOM modality codes as the primary modality identifier." ,0 ,0 ,0 ,"IG exists" , , , ,"81220-6;72230-6" ,"1.0l" ,
|
||||
"17788-1" ,"v2.69 Large unstained cells/100 leukocytes" ,"NFr" ,"Pt" ,"Bld" ,"Qn" ,"Automated count","HEM/BC" ,"2.50" ,"MIN" ,"Part of auto diff output of Bayer H*3S; peroxidase negative cells too large to be classified as lymph or basophil" ,"ACTIVE", ,1 , , , , , ,"Y" ,"%" ,"100WBC; Auto; Automated detection; Blood; Cell; Cellularity; Elec; Elect; Electr; HEMATOLOGY/CELL COUNTS; Leuc; Leuk; Leukocyte; Lkcs; LUC; Number Fraction; Percent; Point in time; QNT; Quan; Quant; Quantitative; Random; WB; WBC; WBCs; White blood cell; White blood cells; Whole blood" ,"LUC/leuk NFr Bld Auto" ,"Observation", , , ,"%" ,"Large unstained cells/100 leukocytes in Blood by Automated count" , , ,"%" , , , , ,1894 ,0 ,1894 , , , , , ,"1.0l" ,
|
||||
"11488-4" ,"v2.69 Consultation note" ,"Find" ,"Pt" ,"{Setting}" ,"Doc" ,"{Role}" ,"DOC.ONTOLOGY","2.63" ,"MIN" , ,"ACTIVE", ,2 , , , , , , , ,"Consult note; DOC.ONT; Document; Encounter; Evaluation and management; Evaluation and management note; Finding; Findings; notes; Point in time; Random; Visit note" ,"Consult note" ,"Both" , , , , ,"Consult note" , , , , , , ,"Edit made because this term is conformant to the Document Ontology axis values and therefore are being placed in this class.; Based on Clinical LOINC Committee decision during the September 2014 meeting, {Provider} was changed to {Author Type} to emphasize a greater breadth of potential document authors. At the September 2015 Clinical LOINC Committee meeting, the Committee decided to change {Author Type} to {Role} to align with the 'Role' axis name in the LOINC Document Ontology.; Because it is too difficult to maintain and because the distinction between documents and sections is not clear-cut nor necessary in most cases, the DOCUMENT_SECTION field has been deemed to have little value. The field has been set to null in the December 2017 release in preparation for removal in the December 2018 release. These changes were approved by the Clinical LOINC Committee.",0 ,0 ,0 ,"IG exists" , , , ,"81222-2;72231-4;81243-8","1.0j-a" ,"Y"
|
||||
"47239-9" ,"v2.69 Reason for stopping HIV Rx" ,"Type" ,"Pt" ,"^Patient" ,"Nom" ,"Reported" ,"ART" ,"2.50" ,"MIN" ,"Reason for stopping antiretroviral therapy" ,"ACTIVE", ,2 , , , , , ,"N" , ,"AIDS; Anti-retroviral therapy; ART; Human immunodeficiency virus; Nominal; Point in time; Random; Treatment; Typ" ,"Reason for stopping HIV Rx" ,"Observation", , ,"Copyright © 2006 World Health Organization. Used with permission. Publications of the World Health Organization can be obtained from WHO Press, World Health Organization, 20 Avenue Appia, 1211 Geneva 27, Switzerland (tel: +41 22 791 2476; fax: +41 22 791 4857; email: bookorders@who.int). Requests for permission to reproduce or translate WHO publications – whether for sale or for noncommercial distribution – should be addressed to WHO Press, at the above address (fax: +41 22 791 4806; email: permissions@who.int). The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or of certain manufacturers’ products does not imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. All reasonable precautions have been taken by WHO to verify the information contained in this publication. However, the published material is being distributed without warranty of any kind, either express or implied. The responsibility for the interpretation and use of the material lies with the reader. In no event shall the World Health Organization be liable for damages arising from its use.", ,"Reason for stopping HIV treatment" , , , , , , , ,0 ,0 ,0 , ,"WHO_HIV" , , , ,"2.22" ,
|
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Reference in New Issue