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hapi-fhir
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3240 Added test case. Currently does not reproduce bug. (#4108) 

* 3240 Added test case. Currently does not reproduce bug.

* 3552 Fixed test case.

* 3552 Added StrictErrorHandler validation before applying patch.

* 3552 Use logger instead of sysout.

* 3552 Use try blocks.

* 3552 Better test name.

Co-authored-by: kylejule <kyle.jule@smilecdr.com>
This commit is contained in:
KGJ-software 2022-10-07 07:50:49 -06:00 committed by GitHub
parent 18093bf311
commit c5e1effe5b
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2 changed files with 89 additions and 12 deletions
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3
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirResourceDao.java
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@ -70,6 +70,7 @@ import ca.uhn.fhir.model.api.IQueryParameterType;
import ca.uhn.fhir.model.dstu2.resource.ListResource;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.parser.StrictErrorHandler;
import ca.uhn.fhir.rest.api.CacheControlDirective;
import ca.uhn.fhir.rest.api.Constants;
import ca.uhn.fhir.rest.api.EncodingEnum;
@ -113,6 +114,7 @@ import ca.uhn.fhir.validation.IValidatorModule;
import ca.uhn.fhir.validation.ValidationOptions;
import ca.uhn.fhir.validation.ValidationResult;
import com.google.common.annotations.VisibleForTesting;
import com.google.gson.Gson;
import org.apache.commons.lang3.Validate;
import org.hl7.fhir.instance.model.api.IBaseCoding;
import org.hl7.fhir.instance.model.api.IBaseMetaType;
@ -1160,6 +1162,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IBaseResource> extends B
@SuppressWarnings("unchecked")
T destinationCasted = (T) destination;
myFhirContext.newJsonParser().setParserErrorHandler(new StrictErrorHandler()).encodeResourceToString(destinationCasted);
return update(destinationCasted, null, true, theRequest);
}

94
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderR4Test.java
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@ -66,6 +66,7 @@ import org.apache.http.entity.ByteArrayEntity;
import org.apache.http.entity.ContentType;
import org.apache.http.entity.StringEntity;
import org.apache.http.message.BasicNameValuePair;
import org.apache.http.util.EntityUtils;
import org.hamcrest.Matchers;
import org.hl7.fhir.common.hapi.validation.validator.FhirInstanceValidator;
import org.hl7.fhir.instance.model.api.IAnyResource;
@ -77,6 +78,7 @@ import org.hl7.fhir.r4.model.AuditEvent;
import org.hl7.fhir.r4.model.BaseResource;
import org.hl7.fhir.r4.model.Basic;
import org.hl7.fhir.r4.model.Binary;
import org.hl7.fhir.r4.model.BooleanType;
import org.hl7.fhir.r4.model.Bundle;
import org.hl7.fhir.r4.model.Bundle.BundleEntryComponent;
import org.hl7.fhir.r4.model.Bundle.BundleLinkComponent;
@ -141,6 +143,7 @@ import org.hl7.fhir.r4.model.Subscription;
import org.hl7.fhir.r4.model.Subscription.SubscriptionChannelType;
import org.hl7.fhir.r4.model.Subscription.SubscriptionStatus;
import org.hl7.fhir.r4.model.UnsignedIntType;
import org.hl7.fhir.r4.model.UriType;
import org.hl7.fhir.r4.model.ValueSet;
import org.hl7.fhir.utilities.xhtml.XhtmlNode;
import org.junit.jupiter.api.AfterEach;
@ -1263,6 +1266,73 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
assertEquals(mediaId, returnedBundle.getEntryFirstRep().getResource().getIdElement());
}
@Test
public void addingExtensionToExtension_shouldThrowException() throws IOException {
// Add a procedure
Extension extension = new Extension();
extension.setUrl("planning-datetime");
extension.setValue(new DateTimeType(("2022-09-16")));
Procedure procedure = new Procedure();
procedure.setExtension(List.of(extension));
String procedureString = myFhirContext.newXmlParser().encodeResourceToString(procedure);
HttpPost procedurePost = new HttpPost(ourServerBase + "/Procedure");
procedurePost.setEntity(new StringEntity(procedureString, ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(procedure));
IdType id;
try (CloseableHttpResponse response = ourHttpClient.execute(procedurePost)) {
assertEquals(201, response.getStatusLine().getStatusCode());
String newIdString = response.getFirstHeader(Constants.HEADER_LOCATION_LC).getValue();
assertThat(newIdString, startsWith(ourServerBase + "/Procedure/"));
id = new IdType(newIdString);
}
// Add an extension to the procedure's extension
Bundle bundle = new Bundle();
bundle.setType(BundleType.TRANSACTION);
BundleEntryComponent entry = new BundleEntryComponent();
Bundle.BundleEntryRequestComponent requestComponent = new Bundle.BundleEntryRequestComponent();
requestComponent.setMethod(HTTPVerb.PATCH);
requestComponent.setUrl("Procedure/" + id.getIdPart());
entry.setRequest(requestComponent);
Parameters parameter = new Parameters();
Parameters.ParametersParameterComponent part1 = new Parameters.ParametersParameterComponent();
part1.setName("type");
part1.setValue(new CodeType("add"));
Parameters.ParametersParameterComponent part2 = new Parameters.ParametersParameterComponent();
part2.setName("path");
part2.setValue(new StringType("Procedure.extension[0]"));
Parameters.ParametersParameterComponent part3 = new Parameters.ParametersParameterComponent();
part3.setName("name");
part3.setValue(new StringType("extension"));
Parameters.ParametersParameterComponent nestedPart = new Parameters.ParametersParameterComponent();
nestedPart.setName("value");
nestedPart.addPart().setName("url").setValue(new UriType("is-preferred"));
nestedPart.addPart().setName("valueBoolean").setValue(new BooleanType(false));
List<Parameters.ParametersParameterComponent> parts = Arrays.asList(part1, part2, part3, nestedPart);
parameter.addParameter()
.setName("operation")
.setPart(parts);
entry.setResource(parameter);
bundle.setEntry(List.of(entry));
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
String parameterResource = myFhirContext.newXmlParser().encodeResourceToString(bundle);
HttpPost parameterPost = new HttpPost(ourServerBase);
parameterPost.setEntity(new StringEntity(parameterResource, ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
try (CloseableHttpResponse response = ourHttpClient.execute(parameterPost)) {
assertEquals(400, response.getStatusLine().getStatusCode());
String responseString = EntityUtils.toString(response.getEntity(), "UTF-8");
assertTrue(responseString.contains("Extension contains both a value and nested extensions"));
}
// Get procedures
HttpGet procedureGet = new HttpGet(ourServerBase + "/Procedure");
try (CloseableHttpResponse response = ourHttpClient.execute(procedureGet)) {
assertEquals(200, response.getStatusLine().getStatusCode());
}
}
@Test
public void testCreateResourceConditional() throws IOException {
String methodName = "testCreateResourceConditional";
@ -2363,8 +2433,9 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
assertThat(allresults, not(hasItem(c5Id)));
}
}
@Test
public void testContains(){
public void testContains() {
List<String> test = List.of("a", "b", "c");
String testString = "testAString";
@ -4082,6 +4153,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
myDaoConfig.setMaximumExpansionSize(new DaoConfig().getMaximumExpansionSize());
}
private void assertOneResult(Bundle theResponse) {
assertThat(theResponse.getEntry().size(), is(equalTo(1)));
}
@ -4963,7 +5035,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
//-- check use normalized quantity table to search
String searchSql = myCaptureQueriesListener.getSelectQueries().get(0).getSql(true, true);
assertThat(searchSql, not (containsString("HFJ_SPIDX_QUANTITY t0")));
assertThat(searchSql, not(containsString("HFJ_SPIDX_QUANTITY t0")));
assertThat(searchSql, (containsString("HFJ_SPIDX_QUANTITY_NRML")));
}
@ -5826,7 +5898,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
@ParameterizedTest
@ValueSource(strings = {Constants.PARAM_TAG, Constants.PARAM_SECURITY})
public void testSearchTagWithInvalidTokenParam(String searchParam){
public void testSearchTagWithInvalidTokenParam(String searchParam) {
try {
myClient
@ -5835,7 +5907,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
.returnBundle(Bundle.class)
.execute();
fail();
} catch (InvalidRequestException ex){
} catch (InvalidRequestException ex) {
assertEquals(Constants.STATUS_HTTP_400_BAD_REQUEST, ex.getStatusCode());
}
@ -6978,7 +7050,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
ourLog.info("Patient: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(patient));
System.out.println("pid0 " + pid0);
ourLog.info("pid0 " + pid0);
}
String uri = ourServerBase + "/Patient?_total=accurate&birthdate=gt2072";
@ -7117,7 +7189,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
}
@Test
public void createResource_withPreserveRequestIdEnabled_requestIdIsPreserved(){
public void createResource_withPreserveRequestIdEnabled_requestIdIsPreserved() {
myDaoConfig.setPreserveRequestIdInResourceBody(true);
String expectedMetaSource = "mySource#345676";
@ -7140,7 +7212,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
}
@Test
public void createResource_withPreserveRequestIdEnabledAndRequestIdLengthGT16_requestIdIsPreserved(){
public void createResource_withPreserveRequestIdEnabledAndRequestIdLengthGT16_requestIdIsPreserved() {
myDaoConfig.setPreserveRequestIdInResourceBody(true);
String metaSource = "mySource#123456789012345678901234567890";
@ -7164,7 +7236,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
}
@Test
public void createResource_withPreserveRequestIdDisabled_RequestIdIsOverwritten(){
public void createResource_withPreserveRequestIdDisabled_RequestIdIsOverwritten() {
String sourceURL = "mySource";
String requestId = "#345676";
String patientId = "1234a";
@ -7187,7 +7259,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
}
@Test
public void searchResource_bySourceAndRequestIdWithPreserveRequestIdEnabled_isSuccess(){
public void searchResource_bySourceAndRequestIdWithPreserveRequestIdEnabled_isSuccess() {
myDaoConfig.setPreserveRequestIdInResourceBody(true);
String sourceUri = "mySource";
@ -7216,7 +7288,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
}
@Test
public void searchResource_bySourceAndRequestIdWithPreserveRequestIdDisabled_fails(){
public void searchResource_bySourceAndRequestIdWithPreserveRequestIdDisabled_fails() {
String sourceURI = "mySource";
String requestId = "345676";
@ -7555,6 +7627,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
/**
* Verifies that the returned Bundle contains the resource
* with the id provided.
*
* @param theBundle - returned bundle
* @param theType - provided resource id
*/
@ -7589,6 +7662,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
/**
* Runs the search on the given resource type with the given (missing) criteria
*
* @param theResourceClass - the resource type class
* @param theCriteria - the missing critia to use
* @return - the found bundle