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hapi-fhir
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Add unit test

This commit is contained in:
James 2016-09-25 13:05:24 -04:00
parent 714adcd4be
commit c784d5647b
3 changed files with 392 additions and 1 deletions
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1
hapi-fhir-cli/.classpath
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@ -1,6 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="src" path="src"/>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
<attributes>
<attribute name="owner.project.facets" value="java"/>

23
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirSystemDaoDstu3Test.java
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@ -49,6 +49,8 @@ import org.springframework.transaction.support.TransactionCallback;
import org.springframework.transaction.support.TransactionTemplate;
import ca.uhn.fhir.jpa.dao.BaseHapiFhirDao;
import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.dao.SearchParameterMap;
import ca.uhn.fhir.jpa.entity.ResourceEncodingEnum;
import ca.uhn.fhir.jpa.entity.ResourceTable;
import ca.uhn.fhir.jpa.entity.TagTypeEnum;
@ -69,6 +71,7 @@ public class FhirSystemDaoDstu3Test extends BaseJpaDstu3SystemTest {
@After
public void after() {
myDaoConfig.setAllowInlineMatchUrlReferences(false);
myDaoConfig.setAllowMultipleDelete(new DaoConfig().isAllowMultipleDelete());
}
@SuppressWarnings("unchecked")
@ -104,6 +107,26 @@ public class FhirSystemDaoDstu3Test extends BaseJpaDstu3SystemTest {
ourLog.info(myFhirCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(mo));
}
@Test
public void testTransactionOruBundle() throws IOException {
myDaoConfig.setAllowMultipleDelete(true);
String input = IOUtils.toString(getClass().getResourceAsStream("/oruBundle.json"), StandardCharsets.UTF_8);
Bundle inputBundle;
Bundle outputBundle;
inputBundle = myFhirCtx.newJsonParser().parseResource(Bundle.class, input);
outputBundle = mySystemDao.transaction(mySrd, inputBundle);
ourLog.info(myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(outputBundle));
inputBundle = myFhirCtx.newJsonParser().parseResource(Bundle.class, input);
outputBundle = mySystemDao.transaction(mySrd, inputBundle);
ourLog.info(myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(outputBundle));
IBundleProvider allPatients = myPatientDao.search(new SearchParameterMap());
assertEquals(1, allPatients.size());
}
@Test
public void testDeleteWithHas() {
Observation obs1 = new Observation();

369
hapi-fhir-jpaserver-base/src/test/resources/oruBundle.json Normal file
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@ -0,0 +1,369 @@
{
"resourceType": "Bundle",
"entry": [
{
"fullUrl": "urn:uuid:09a8d22c-1e23-4e5f-b3bf-505772f123d1",
"resource": {
"resourceType": "Patient",
"identifier": [
{
"use": "official",
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/v2/0203",
"code": "MR"
}
]
},
"system": "UHN",
"value": "7007474"
},
{
"use": "secondary",
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/v2/0203",
"code": "JHN"
}
]
},
"system": "CANON",
"value": "5623417853"
}
],
"name": [
{
"use": "official",
"family": [
"Test"
],
"given": [
"Physician-IP-TG",
"A"
],
"prefix": [
"MS."
]
}
],
"telecom": [
{
"system": "phone",
"value": "(905)235-6897",
"use": "home"
}
],
"gender": "female",
"birthDate": "1975-01-10",
"deceasedBoolean": false,
"address": [
{
"use": "home",
"line": [
"25 Rathburn Rd"
],
"city": "MISSISSAUGA",
"state": "ON",
"postalCode": "L5G 2G8",
"country": "Can"
}
]
},
"request": {
"method": "PUT",
"url": "/Patient?identifier=UHN%7C7007474"
}
},
{
"fullUrl": "urn:uuid:29e3a213-0df4-41e0-88f8-e3be83277022",
"resource": {
"resourceType": "Encounter",
"contained": [
{
"resourceType": "Location",
"id": "1",
"name": "2",
"description": "7C 102"
}
],
"identifier": [
{
"use": "official",
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/v2/0203",
"code": "VN"
}
]
},
"system": "UHN",
"value": "281000561"
}
],
"class": {
"system": "http://hl7.org/fhir/v3/ActCode",
"code": "IMP",
"display": "Inpatient"
},
"patient": {
"reference": "urn:uuid:09a8d22c-1e23-4e5f-b3bf-505772f123d1"
},
"period": {
"start": "2008-09-30T09:53:00-04:00"
},
"location": [
{
"location": {
"reference": "#1"
}
}
]
},
"request": {
"method": "PUT",
"url": "/Encounter?identifier=UHN%7C281000561"
}
},
{
"fullUrl": "urn:uuid:3b3f2d52-2153-44ac-b6b9-d1153db04561",
"resource": {
"resourceType": "DiagnosticRequest",
"contained": [
{
"resourceType": "Practitioner",
"id": "1"
}
],
"identifier": [
{
"use": "official",
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/v2/0203",
"code": "PLAC"
}
]
},
"system": "EPR",
"value": "SM.14.145"
}
],
"code": {
"coding": [
{
"system": "HL70396",
"code": "9073",
"display": "Miscellaneous Infection Control Screen"
}
]
},
"subject": {
"reference": "urn:uuid:09a8d22c-1e23-4e5f-b3bf-505772f123d1"
},
"context": {
"reference": "urn:uuid:29e3a213-0df4-41e0-88f8-e3be83277022"
},
"occurrenceDateTime": "2011-12-01T09:49:12-05:00",
"requester": {
"reference": "#1"
}
},
"request": {
"method": "PUT",
"url": "/DiagnosticRequest?identifier=EPR%7CSM.14.145"
}
},
{
"fullUrl": "urn:uuid:d855f498-2431-410c-ae4f-0b668d7adde1",
"resource": {
"resourceType": "DiagnosticReport",
"identifier": [
{
"use": "official",
"type": {
"coding": [
{
"system": "http://hl7.org/fhir/v2/0203",
"code": "PLAC"
}
]
},
"system": "EPR",
"value": "SM.14.145"
}
],
"status": "final",
"code": {
"coding": [
{
"system": "HL70396",
"code": "9073",
"display": "Miscellaneous Infection Control Screen"
}
]
},
"subject": {
"reference": "urn:uuid:09a8d22c-1e23-4e5f-b3bf-505772f123d1"
},
"encounter": {
"reference": "urn:uuid:29e3a213-0df4-41e0-88f8-e3be83277022"
},
"effectiveDateTime": "2011-11-23T00:00:00-05:00",
"request": [
{
"reference": "urn:uuid:3b3f2d52-2153-44ac-b6b9-d1153db04561"
}
],
"result": [
{
"reference": "urn:uuid:3f2de61a-8eb0-465b-a5e2-ca7a8f44a102"
},
{
"reference": "urn:uuid:790b4667-9a99-476c-bd52-14bd494dbcd6"
},
{
"reference": "urn:uuid:dc519662-295c-472c-a9ea-7ad8f09b176e"
},
{
"reference": "urn:uuid:b84b5fc9-127a-4d07-9ddb-404cfed86ecf"
}
]
},
"request": {
"method": "PUT",
"url": "/DiagnosticReport?identifier=EPR%7CSM.14.145"
}
},
{
"request": {
"method": "DELETE",
"url": "Observation?_has:DiagnosticReport:result:identifier=EPR%7CSM.14.145"
}
},
{
"fullUrl": "urn:uuid:3f2de61a-8eb0-465b-a5e2-ca7a8f44a102",
"resource": {
"resourceType": "Observation",
"status": "final",
"code": {
"coding": [
{
"system": "HL70396",
"code": "Q",
"display": "Test Comment"
}
]
},
"subject": {
"reference": "urn:uuid:09a8d22c-1e23-4e5f-b3bf-505772f123d1"
},
"encounter": {
"reference": "urn:uuid:29e3a213-0df4-41e0-88f8-e3be83277022"
},
"effectiveDateTime": "2011-12-01T09:49:00-05:00",
"valueString": "This specimen was documented as collected but not received by the Microbiology Laboratory after 7 days. If this test is still required, please place a new order."
},
"request": {
"method": "POST",
"url": "/Observation"
}
},
{
"fullUrl": "urn:uuid:790b4667-9a99-476c-bd52-14bd494dbcd6",
"resource": {
"resourceType": "Observation",
"status": "final",
"code": {
"coding": [
{
"system": "HL70396",
"code": "SFTACC",
"display": "LIS Order #"
}
]
},
"subject": {
"reference": "urn:uuid:09a8d22c-1e23-4e5f-b3bf-505772f123d1"
},
"encounter": {
"reference": "urn:uuid:29e3a213-0df4-41e0-88f8-e3be83277022"
},
"effectiveDateTime": "2011-12-01T09:49:00-05:00",
"valueString": "N9230010"
},
"request": {
"method": "POST",
"url": "/Observation"
}
},
{
"fullUrl": "urn:uuid:dc519662-295c-472c-a9ea-7ad8f09b176e",
"resource": {
"resourceType": "Observation",
"status": "final",
"code": {
"coding": [
{
"system": "HL70396",
"code": "SFTWP",
"display": "Micro Rpt"
}
]
},
"subject": {
"reference": "urn:uuid:09a8d22c-1e23-4e5f-b3bf-505772f123d1"
},
"encounter": {
"reference": "urn:uuid:29e3a213-0df4-41e0-88f8-e3be83277022"
},
"effectiveDateTime": "2011-12-01T09:49:00-05:00",
"valueString": "Report test"
},
"request": {
"method": "POST",
"url": "/Observation"
}
},
{
"fullUrl": "urn:uuid:b84b5fc9-127a-4d07-9ddb-404cfed86ecf",
"resource": {
"resourceType": "Observation",
"status": "final",
"code": {
"coding": [
{
"system": "HL70396",
"code": "NA",
"display": "Sodium"
}
]
},
"subject": {
"reference": "urn:uuid:09a8d22c-1e23-4e5f-b3bf-505772f123d1"
},
"encounter": {
"reference": "urn:uuid:29e3a213-0df4-41e0-88f8-e3be83277022"
},
"effectiveDateTime": "2011-12-01T10:57:00-05:00",
"valueQuantity": {
"value": 180,
"system": "HL70396",
"code": "mmol/L"
},
"referenceRange": [
{
"text": "135 - 147"
}
]
},
"request": {
"method": "POST",
"url": "/Observation"
}
}
]
}