Add status to bundle entries
This commit is contained in:
James Agnew
parent
b85b6b8993
commit
c786b00950
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@ -42,61 +42,26 @@ public class BundleEntry extends BaseBundle {
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//@formatter:on
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private TagList myCategories;
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private InstantDt myDeletedAt;
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private CodeDt myDeletedResourceType;
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private StringDt myDeletedResourceId;
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private StringDt myDeletedResourceVersion;
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public CodeDt getDeletedResourceType() {
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if (myDeletedResourceType == null) {
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myDeletedResourceType = new CodeDt();
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}
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return myDeletedResourceType;
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}
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public void setDeletedResourceType(CodeDt theDeletedResourceType) {
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myDeletedResourceType = theDeletedResourceType;
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}
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public StringDt getDeletedResourceId() {
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if (myDeletedResourceId == null) {
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myDeletedResourceId = new StringDt();
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}
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return myDeletedResourceId;
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}
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public void setDeletedResourceId(StringDt theDeletedResourceId) {
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myDeletedResourceId = theDeletedResourceId;
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}
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public StringDt getDeletedResourceVersion() {
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if (myDeletedResourceVersion == null) {
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myDeletedResourceVersion = new StringDt();
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}
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return myDeletedResourceVersion;
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}
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public void setDeletedResourceVersion(StringDt theDeletedResourceVersion) {
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myDeletedResourceVersion = theDeletedResourceVersion;
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}
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private StringDt myDeletedByEmail;
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private StringDt myDeletedByName;
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private StringDt myDeletedComment;
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private StringDt myDeletedResourceId;
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private CodeDt myDeletedResourceType;
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private StringDt myDeletedResourceVersion;
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private StringDt myLinkAlternate;
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private StringDt myLinkBase;
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private StringDt myLinkSearch;
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private StringDt myLinkSelf;
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private StringDt myLinkBase;
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private InstantDt myPublished;
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private IResource myResource;
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private DecimalDt myScore;
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private BoundCodeDt<BundleEntryStatusEnum> myStatus;
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private XhtmlDt mySummary;
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private StringDt myTitle;
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private InstantDt myUpdated;
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private BoundCodeDt<BundleEntryStatusEnum> myStatus;
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private DecimalDt myScore;
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/**
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* @deprecated Tags wil become immutable in a future release of HAPI, so
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* {@link #addCategory(String, String, String)} should be used instead
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* @deprecated Tags wil become immutable in a future release of HAPI, so {@link #addCategory(String, String, String)} should be used instead
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*/
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public Tag addCategory() {
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Tag retVal = new Tag();
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@ -150,6 +115,27 @@ public class BundleEntry extends BaseBundle {
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return myDeletedComment;
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}
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public StringDt getDeletedResourceId() {
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if (myDeletedResourceId == null) {
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myDeletedResourceId = new StringDt();
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}
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return myDeletedResourceId;
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}
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public CodeDt getDeletedResourceType() {
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if (myDeletedResourceType == null) {
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myDeletedResourceType = new CodeDt();
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}
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return myDeletedResourceType;
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}
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public StringDt getDeletedResourceVersion() {
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if (myDeletedResourceVersion == null) {
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myDeletedResourceVersion = new StringDt();
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}
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return myDeletedResourceVersion;
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}
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public StringDt getLinkAlternate() {
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if (myLinkAlternate == null) {
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myLinkAlternate = new StringDt();
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@ -189,6 +175,13 @@ public class BundleEntry extends BaseBundle {
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return myResource;
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}
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public DecimalDt getScore() {
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if (myScore == null) {
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myScore = new DecimalDt();
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}
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return myScore;
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}
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public BoundCodeDt<BundleEntryStatusEnum> getStatus() {
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if (myStatus == null) {
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myStatus = new BoundCodeDt<BundleEntryStatusEnum>(BundleEntryStatusEnum.VALUESET_BINDER);
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@ -211,9 +204,8 @@ public class BundleEntry extends BaseBundle {
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}
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/**
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* @deprecated <b>DSTU2 Note:</b> As of DSTU2, bundle entries no longer have an updated time (this bit of metadata has been moved
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* to the resource <meta/> element so it is redundant here). In preparation for DSTU2, it is recommended that you
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* migrate code away from using this method and over to using resource metadata instead.
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* @deprecated <b>DSTU2 Note:</b> As of DSTU2, bundle entries no longer have an updated time (this bit of metadata has been moved to the resource <meta/> element so it is redundant here). In
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* preparation for DSTU2, it is recommended that you migrate code away from using this method and over to using resource metadata instead.
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*/
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public InstantDt getUpdated() {
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if (myUpdated == null) {
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@ -221,7 +213,7 @@ public class BundleEntry extends BaseBundle {
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}
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if (myUpdated.isEmpty() && myResource != null) {
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InstantDt resourceUpdated = ResourceMetadataKeyEnum.UPDATED.get(myResource);
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if (resourceUpdated!=null && !resourceUpdated.isEmpty()) {
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if (resourceUpdated != null && !resourceUpdated.isEmpty()) {
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return resourceUpdated;
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}
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}
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@ -258,6 +250,18 @@ public class BundleEntry extends BaseBundle {
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myDeletedComment = theDeletedComment;
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}
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public void setDeletedResourceId(StringDt theDeletedResourceId) {
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myDeletedResourceId = theDeletedResourceId;
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}
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public void setDeletedResourceType(CodeDt theDeletedResourceType) {
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myDeletedResourceType = theDeletedResourceType;
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}
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public void setDeletedResourceVersion(StringDt theDeletedResourceVersion) {
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myDeletedResourceVersion = theDeletedResourceVersion;
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}
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public void setLinkAlternate(StringDt theLinkAlternate) {
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myLinkAlternate = theLinkAlternate;
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}
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@ -286,14 +290,17 @@ public class BundleEntry extends BaseBundle {
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myResource = theResource;
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}
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public void setScore(DecimalDt theScore) {
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myScore = theScore;
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}
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public void setStatus(BoundCodeDt<BundleEntryStatusEnum> theStatus) {
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myStatus = theStatus;
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}
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/**
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* @deprecated <b>DSTU2 Note:</b> As of DSTU2, bundle entries no longer have an updated time (this bit of metadata has been moved
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* to the resource <meta/> element so it is redundant here). In preparation for DSTU2, it is recommended that you
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* migrate code away from using this method and over to using resource metadata instead.
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* @deprecated <b>DSTU2 Note:</b> As of DSTU2, bundle entries no longer have an updated time (this bit of metadata has been moved to the resource <meta/> element so it is redundant here). In
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* preparation for DSTU2, it is recommended that you migrate code away from using this method and over to using resource metadata instead.
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*/
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public void setUpdated(InstantDt theUpdated) {
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Validate.notNull(theUpdated, "Updated may not be null");
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@ -312,15 +319,4 @@ public class BundleEntry extends BaseBundle {
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return b.toString();
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}
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public DecimalDt getScore() {
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if (myScore == null) {
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myScore = new DecimalDt();
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}
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return myScore;
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}
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public void setScore(DecimalDt theScore) {
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myScore = theScore;
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}
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}
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@ -21,6 +21,7 @@ package ca.uhn.fhir.rest.server;
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*/
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.context.FhirVersionEnum;
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import ca.uhn.fhir.context.ProvidedResourceScanner;
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import ca.uhn.fhir.context.RuntimeResourceDefinition;
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import ca.uhn.fhir.model.api.*;
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@ -30,6 +31,7 @@ import ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt;
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import ca.uhn.fhir.model.dstu.resource.Binary;
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import ca.uhn.fhir.model.primitive.IdDt;
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import ca.uhn.fhir.model.primitive.InstantDt;
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import ca.uhn.fhir.model.valueset.BundleEntryStatusEnum;
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import ca.uhn.fhir.parser.IParser;
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import ca.uhn.fhir.rest.annotation.Destroy;
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import ca.uhn.fhir.rest.annotation.IdParam;
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@ -1116,7 +1118,7 @@ public class RestfulServer extends HttpServlet {
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bundle.getLinkBase().setValue(theServerBase);
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bundle.getLinkSelf().setValue(theCompleteUrl);
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List<IResource> addedResources = new ArrayList<IResource>();
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List<IResource> includedResources = new ArrayList<IResource>();
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Set<IdDt> addedResourceIds = new HashSet<IdDt>();
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for (IResource next : theResult) {
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@ -1172,7 +1174,7 @@ public class RestfulServer extends HttpServlet {
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references.addAll(newReferences);
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}
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addedResources.addAll(addedResourcesThisPass);
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includedResources.addAll(addedResourcesThisPass);
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} while (references.isEmpty() == false);
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@ -1183,8 +1185,11 @@ public class RestfulServer extends HttpServlet {
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/*
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* Actually add the resources to the bundle
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*/
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for (IResource next : addedResources) {
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bundle.addResource(next, theContext, theServerBase);
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for (IResource next : includedResources) {
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BundleEntry entry = bundle.addResource(next, theContext, theServerBase);
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if (theContext.getVersion().getVersion().isNewerThan(FhirVersionEnum.DSTU1)) {
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entry.getStatus().setValueAsEnum(BundleEntryStatusEnum.INCLUDE);
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}
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}
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bundle.getTotalResults().setValue(theTotalResults);
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@ -53,7 +53,18 @@ public class TestRestfulServer extends RestfulServer {
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ETagSupportEnum etagSupport;
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String baseUrlProperty;
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switch (fhirVersionParam.trim().toUpperCase()) {
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case "DSTU":
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case "BASE": {
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setFhirContext(FhirContext.forDstu1());
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beans = myAppCtx.getBean("myResourceProvidersDstu1", List.class);
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systemProvider = myAppCtx.getBean("mySystemProviderDstu1", JpaSystemProvider.class);
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systemDao = myAppCtx.getBean("mySystemDaoDstu1", IFhirSystemDao.class);
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etagSupport = ETagSupportEnum.DISABLED;
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JpaConformanceProviderDstu1 confProvider = new JpaConformanceProviderDstu1(this, systemDao);
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confProvider.setImplementationDescription(implDesc);
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setServerConformanceProvider(confProvider);
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baseUrlProperty = "fhir.baseurl";
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break;
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}
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case "DSTU1": {
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setFhirContext(FhirContext.forDstu1());
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beans = myAppCtx.getBean("myResourceProvidersDstu1", List.class);
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@ -66,7 +77,7 @@ public class TestRestfulServer extends RestfulServer {
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baseUrlProperty = "fhir.baseurl.dstu1";
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break;
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}
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case "DEV": {
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case "DSTU2": {
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setFhirContext(FhirContext.forDev());
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beans = myAppCtx.getBean("myResourceProvidersDev", List.class);
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systemProvider = myAppCtx.getBean("mySystemProviderDev", JpaSystemProvider.class);
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@ -82,32 +93,61 @@ public class TestRestfulServer extends RestfulServer {
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throw new ServletException("Unknown FHIR version specified in init-param[FhirVersion]: " + fhirVersionParam);
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}
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/*
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* On the DSTU2 endpoint, we want to enable ETag support
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*/
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setETagSupport(etagSupport);
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/*
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* This server tries to dynamically generate narratives
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*/
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FhirContext ctx = getFhirContext();
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ctx.setNarrativeGenerator(new DefaultThymeleafNarrativeGenerator());
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/*
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* The resource and system providers (which actually implement the various FHIR
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* operations in this server) are all retrieved from the spring context above
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* and are provided to the server here.
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*/
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for (IResourceProvider nextResourceProvider : beans) {
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ourLog.info(" * Have resource provider for: {}", nextResourceProvider.getResourceType().getSimpleName());
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}
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setResourceProviders(beans);
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setPlainProviders(systemProvider);
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/*
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* This tells the server to use "incorrect" MIME types if it detects that the
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* request is coming from a browser in the hopes that the browser won't just treat
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* the content as a binary payload and try to download it (which is what generally
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* happens if you load a FHIR URL in a browser)
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*/
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setUseBrowserFriendlyContentTypes(true);
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/*
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* The server's base URL (e.g. http://fhirtest.uhn.ca/baseDstu2) is
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* pulled from a system property, which is helpful if you want to try
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* hosting your own copy of this server.
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*/
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String baseUrl = System.getProperty(baseUrlProperty);
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if (StringUtils.isBlank(baseUrl)) {
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// Fall back to the old URL
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// Try to fall back in case the property isn't set
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baseUrl = System.getProperty("fhir.baseurl");
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if (StringUtils.isBlank(baseUrl)) {
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throw new ServletException("Missing system property: " + baseUrlProperty);
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}
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}
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setServerAddressStrategy(new HardcodedServerAddressStrategy(baseUrl));
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/*
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* This is a simple paging strategy that keeps the last 10
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* searches in memory
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*/
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setPagingProvider(new FifoMemoryPagingProvider(10));
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/*
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* Do some fancy logging to create a nice access log that has details
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* about each incoming request.
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*/
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LoggingInterceptor loggingInterceptor = new LoggingInterceptor();
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loggingInterceptor.setLoggerName("fhirtest.access");
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loggingInterceptor.setMessageFormat("Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] Operation[${operationType} ${idOrResourceName}] UA[${requestHeader.user-agent}] Params[${requestParameters}]");
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@ -33,6 +33,20 @@
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<load-on-startup>2</load-on-startup>
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</servlet>
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<servlet>
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<servlet-name>fhirServletBase</servlet-name>
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<servlet-class>ca.uhn.fhirtest.TestRestfulServer</servlet-class>
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<init-param>
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<param-name>ImplementationDescription</param-name>
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<param-value>UHN Test Server (Base / DSTU1 Resources)</param-value>
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</init-param>
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<init-param>
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<param-name>FhirVersion</param-name>
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<param-value>BASE</param-value>
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</init-param>
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<load-on-startup>1</load-on-startup>
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</servlet>
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<servlet>
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<servlet-name>fhirServletDstu1</servlet-name>
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<servlet-class>ca.uhn.fhirtest.TestRestfulServer</servlet-class>
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@ -48,21 +62,21 @@
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</servlet>
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<servlet>
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<servlet-name>fhirServletDev</servlet-name>
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<servlet-name>fhirServletDstu2</servlet-name>
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<servlet-class>ca.uhn.fhirtest.TestRestfulServer</servlet-class>
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<init-param>
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<param-name>ImplementationDescription</param-name>
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<param-value>UHN Test Server (DEV Resources)</param-value>
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<param-value>UHN Test Server (DSTU2 Resources)</param-value>
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</init-param>
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<init-param>
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<param-name>FhirVersion</param-name>
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<param-value>DEV</param-value>
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<param-value>DSTU2</param-value>
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</init-param>
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<load-on-startup>1</load-on-startup>
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</servlet>
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<servlet-mapping>
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<servlet-name>fhirServletDstu1</servlet-name>
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<servlet-name>fhirServletBase</servlet-name>
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<url-pattern>/base/*</url-pattern>
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</servlet-mapping>
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@ -72,12 +86,12 @@
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</servlet-mapping>
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<servlet-mapping>
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<servlet-name>fhirServletDev</servlet-name>
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<servlet-name>fhirServletDstu2</servlet-name>
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<url-pattern>/baseDstu2/*</url-pattern>
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</servlet-mapping>
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<servlet-mapping>
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<servlet-name>fhirServletDev</servlet-name>
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<servlet-name>fhirServletDstu2</servlet-name>
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<url-pattern>/baseDev/*</url-pattern>
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</servlet-mapping>
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@ -16,12 +16,12 @@
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</arguments>
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</buildCommand>
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<buildCommand>
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<name>org.eclipse.m2e.core.maven2Builder</name>
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<name>org.eclipse.wst.validation.validationbuilder</name>
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<arguments>
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</arguments>
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</buildCommand>
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<buildCommand>
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<name>org.eclipse.wst.validation.validationbuilder</name>
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<name>org.eclipse.m2e.core.maven2Builder</name>
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<arguments>
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</arguments>
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</buildCommand>
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@ -50,6 +50,7 @@ public class XmlParserTest {
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assertEquals(1, parsed.getEntries().size());
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assertEquals("update", parsed.getEntries().get(0).getStatus().getValue());
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assertEquals("http://foo?search", parsed.getEntries().get(0).getLinkSearch().getValue());
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MedicationPrescription p = (MedicationPrescription) parsed.getEntries().get(0).getResource();
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assertEquals("Patient/example", p.getPatient().getReference().getValue());
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@ -0,0 +1,490 @@
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package ca.uhn.fhir.rest.server;
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import static org.hamcrest.Matchers.containsInAnyOrder;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertThat;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Collections;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Set;
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import java.util.concurrent.TimeUnit;
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import org.apache.commons.io.IOUtils;
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import org.apache.http.HttpResponse;
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import org.apache.http.client.methods.HttpGet;
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import org.apache.http.impl.client.CloseableHttpClient;
|
||||
import org.apache.http.impl.client.HttpClientBuilder;
|
||||
import org.apache.http.impl.conn.PoolingHttpClientConnectionManager;
|
||||
import org.eclipse.jetty.server.Server;
|
||||
import org.eclipse.jetty.servlet.ServletHandler;
|
||||
import org.eclipse.jetty.servlet.ServletHolder;
|
||||
import org.junit.AfterClass;
|
||||
import org.junit.BeforeClass;
|
||||
import org.junit.Test;
|
||||
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.model.api.Bundle;
|
||||
import ca.uhn.fhir.model.api.IResource;
|
||||
import ca.uhn.fhir.model.api.Include;
|
||||
import ca.uhn.fhir.model.api.annotation.Child;
|
||||
import ca.uhn.fhir.model.api.annotation.Extension;
|
||||
import ca.uhn.fhir.model.api.annotation.ResourceDef;
|
||||
import ca.uhn.fhir.model.dev.resource.DiagnosticReport;
|
||||
import ca.uhn.fhir.model.dev.resource.Observation;
|
||||
import ca.uhn.fhir.model.dev.resource.Organization;
|
||||
import ca.uhn.fhir.model.dev.resource.Patient;
|
||||
import ca.uhn.fhir.model.dev.resource.Practitioner;
|
||||
import ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt;
|
||||
import ca.uhn.fhir.model.primitive.IdDt;
|
||||
import ca.uhn.fhir.model.primitive.StringDt;
|
||||
import ca.uhn.fhir.model.valueset.BundleEntryStatusEnum;
|
||||
import ca.uhn.fhir.rest.annotation.IncludeParam;
|
||||
import ca.uhn.fhir.rest.annotation.RequiredParam;
|
||||
import ca.uhn.fhir.rest.annotation.Search;
|
||||
import ca.uhn.fhir.util.ElementUtil;
|
||||
import ca.uhn.fhir.util.PortUtil;
|
||||
|
||||
/**
|
||||
* Created by dsotnikov on 2/25/2014.
|
||||
*/
|
||||
public class IncludeTest {
|
||||
|
||||
private static CloseableHttpClient ourClient;
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(IncludeTest.class);
|
||||
private static int ourPort;
|
||||
private static Server ourServer;
|
||||
private static FhirContext ourCtx;
|
||||
|
||||
@Test
|
||||
public void testNoIncludes() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(1, bundle.size());
|
||||
|
||||
Patient p = bundle.getResources(Patient.class).get(0);
|
||||
assertEquals(0, p.getName().size());
|
||||
assertEquals("Hello", p.getId().getIdPart());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testOneInclude() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(1, bundle.size());
|
||||
|
||||
Patient p = bundle.getResources(Patient.class).get(0);
|
||||
assertEquals(1, p.getName().size());
|
||||
assertEquals("Hello", p.getId().getIdPart());
|
||||
assertEquals("foo", p.getName().get(0).getFamilyFirstRep().getValue());
|
||||
}
|
||||
|
||||
|
||||
// @Test
|
||||
public void testMixedContainedAndNonContained() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/DiagnosticReport?_query=stitchedInclude&_pretty=true");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
ourLog.info(responseContent);
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(4, bundle.size());
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testIIncludedResourcesNonContained() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=normalInclude&_pretty=true");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
|
||||
ourLog.info(responseContent);
|
||||
|
||||
assertEquals(3, bundle.size());
|
||||
assertEquals(new IdDt("Patient/p1"), bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Patient/p2"), bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Organization/o1"), bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
|
||||
assertEquals(BundleEntryStatusEnum.INCLUDE, bundle.getEntries().get(2).getStatus().getValueAsEnum());
|
||||
|
||||
Patient p1 = (Patient) bundle.toListOfResources().get(0);
|
||||
assertEquals(0,p1.getContained().getContainedResources().size());
|
||||
|
||||
Patient p2 = (Patient) bundle.toListOfResources().get(1);
|
||||
assertEquals(0,p2.getContained().getContainedResources().size());
|
||||
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testIIncludedResourcesNonContainedInExtension() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=extInclude&_pretty=true");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
|
||||
ourLog.info(responseContent);
|
||||
|
||||
assertEquals(3, bundle.size());
|
||||
assertEquals(new IdDt("Patient/p1"), bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Patient/p2"), bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Organization/o1"), bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
|
||||
assertEquals(BundleEntryStatusEnum.INCLUDE, bundle.getEntries().get(2).getStatus().getValueAsEnum());
|
||||
|
||||
Patient p1 = (Patient) bundle.toListOfResources().get(0);
|
||||
assertEquals(0,p1.getContained().getContainedResources().size());
|
||||
|
||||
Patient p2 = (Patient) bundle.toListOfResources().get(1);
|
||||
assertEquals(0,p2.getContained().getContainedResources().size());
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testIIncludedResourcesNonContainedInExtensionJson() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=extInclude&_pretty=true&_format=json");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newJsonParser().parseBundle(responseContent);
|
||||
|
||||
ourLog.info(responseContent);
|
||||
|
||||
assertEquals(3, bundle.size());
|
||||
assertEquals(new IdDt("Patient/p1"), bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Patient/p2"), bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Organization/o1"), bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
|
||||
assertEquals(BundleEntryStatusEnum.INCLUDE, bundle.getEntries().get(2).getStatus().getValueAsEnum());
|
||||
|
||||
Patient p1 = (Patient) bundle.toListOfResources().get(0);
|
||||
assertEquals(0,p1.getContained().getContainedResources().size());
|
||||
|
||||
Patient p2 = (Patient) bundle.toListOfResources().get(1);
|
||||
assertEquals(0,p2.getContained().getContainedResources().size());
|
||||
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testIIncludedResourcesNonContainedInDeclaredExtension() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=declaredExtInclude&_pretty=true");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
|
||||
ourLog.info(responseContent);
|
||||
|
||||
assertEquals(4, bundle.size());
|
||||
assertEquals(new IdDt("Patient/p1"), bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Patient/p2"), bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Organization/o1"), bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
|
||||
assertEquals(new IdDt("Organization/o2"), bundle.toListOfResources().get(3).getId().toUnqualifiedVersionless());
|
||||
assertEquals(BundleEntryStatusEnum.INCLUDE, bundle.getEntries().get(2).getStatus().getValueAsEnum());
|
||||
assertEquals(BundleEntryStatusEnum.INCLUDE, bundle.getEntries().get(3).getStatus().getValueAsEnum());
|
||||
|
||||
Patient p1 = (Patient) bundle.toListOfResources().get(0);
|
||||
assertEquals(0,p1.getContained().getContainedResources().size());
|
||||
|
||||
Patient p2 = (Patient) bundle.toListOfResources().get(1);
|
||||
assertEquals(0,p2.getContained().getContainedResources().size());
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
@Test
|
||||
public void testTwoInclude() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_include=bar");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
String responseContent = IOUtils.toString(status.getEntity().getContent());
|
||||
IOUtils.closeQuietly(status.getEntity().getContent());
|
||||
|
||||
assertEquals(200, status.getStatusLine().getStatusCode());
|
||||
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
|
||||
assertEquals(1, bundle.size());
|
||||
|
||||
Patient p = bundle.getResources(Patient.class).get(0);
|
||||
assertEquals(2, p.getName().size());
|
||||
assertEquals("Hello", p.getId().getIdPart());
|
||||
|
||||
Set<String> values = new HashSet<String>();
|
||||
values.add( p.getName().get(0).getFamilyFirstRep().getValue());
|
||||
values.add( p.getName().get(1).getFamilyFirstRep().getValue());
|
||||
assertThat(values, containsInAnyOrder("foo", "bar"));
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testBadInclude() throws Exception {
|
||||
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_include=baz");
|
||||
HttpResponse status = ourClient.execute(httpGet);
|
||||
assertEquals(400, status.getStatusLine().getStatusCode());
|
||||
}
|
||||
|
||||
@AfterClass
|
||||
public static void afterClass() throws Exception {
|
||||
ourServer.stop();
|
||||
}
|
||||
|
||||
@BeforeClass
|
||||
public static void beforeClass() throws Exception {
|
||||
|
||||
ourCtx = new FhirContext();
|
||||
ourPort = PortUtil.findFreePort();
|
||||
ourServer = new Server(ourPort);
|
||||
|
||||
DummyPatientResourceProvider patientProvider = new DummyPatientResourceProvider();
|
||||
|
||||
ServletHandler proxyHandler = new ServletHandler();
|
||||
RestfulServer servlet = new RestfulServer();
|
||||
servlet.setFhirContext(ourCtx);
|
||||
servlet.setResourceProviders(patientProvider, new DummyDiagnosticReportResourceProvider());
|
||||
ServletHolder servletHolder = new ServletHolder(servlet);
|
||||
proxyHandler.addServletWithMapping(servletHolder, "/*");
|
||||
ourServer.setHandler(proxyHandler);
|
||||
ourServer.start();
|
||||
|
||||
PoolingHttpClientConnectionManager connectionManager = new PoolingHttpClientConnectionManager(5000, TimeUnit.MILLISECONDS);
|
||||
HttpClientBuilder builder = HttpClientBuilder.create();
|
||||
builder.setConnectionManager(connectionManager);
|
||||
ourClient = builder.build();
|
||||
|
||||
}
|
||||
|
||||
@ResourceDef(name="Patient")
|
||||
public static class ExtPatient extends Patient
|
||||
{
|
||||
@Child(name="secondOrg")
|
||||
@Extension(url="http://foo#secondOrg", definedLocally = false, isModifier = false)
|
||||
private ResourceReferenceDt mySecondOrg;
|
||||
|
||||
@Override
|
||||
public boolean isEmpty() {
|
||||
return super.isEmpty() && ElementUtil.isEmpty(mySecondOrg);
|
||||
}
|
||||
|
||||
public ResourceReferenceDt getSecondOrg() {
|
||||
if (mySecondOrg==null) {
|
||||
mySecondOrg= new ResourceReferenceDt();
|
||||
}
|
||||
return mySecondOrg;
|
||||
}
|
||||
|
||||
public void setSecondOrg(ResourceReferenceDt theSecondOrg) {
|
||||
mySecondOrg = theSecondOrg;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
/**
|
||||
* Created by dsotnikov on 2/25/2014.
|
||||
*/
|
||||
public static class DummyDiagnosticReportResourceProvider implements IResourceProvider {
|
||||
|
||||
@Override
|
||||
public Class<? extends IResource> getResourceType() {
|
||||
return DiagnosticReport.class;
|
||||
}
|
||||
|
||||
@Search(queryName = "stitchedInclude")
|
||||
public List<DiagnosticReport> stitchedInclude() {
|
||||
Practitioner pr1 = new Practitioner();
|
||||
pr1.setId("Practitioner/001");
|
||||
pr1.getName().addFamily("Pract1");
|
||||
|
||||
Practitioner pr2 = new Practitioner();
|
||||
pr2.setId("Practitioner/002");
|
||||
pr2.getName().addFamily("Pract2");
|
||||
|
||||
Practitioner pr3 = new Practitioner();
|
||||
pr3.setId("Practitioner/003");
|
||||
pr3.getName().addFamily("Pract3");
|
||||
|
||||
Observation o1 = new Observation();
|
||||
o1.getName().setText("Obs1");
|
||||
o1.addPerformer().setResource(pr1);
|
||||
|
||||
Observation o2 = new Observation();
|
||||
o2.getName().setText("Obs2");
|
||||
o2.addPerformer().setResource(pr2);
|
||||
|
||||
Observation o3 = new Observation();
|
||||
o3.getName().setText("Obs3");
|
||||
o3.addPerformer().setResource(pr3);
|
||||
|
||||
DiagnosticReport rep = new DiagnosticReport();
|
||||
rep.setId("DiagnosticReport/999");
|
||||
rep.getName().setText("Rep");
|
||||
rep.addResult().setResource(o1);
|
||||
rep.addResult().setResource(o2);
|
||||
rep.addResult().setResource(o3);
|
||||
|
||||
return Collections.singletonList(rep);
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Created by dsotnikov on 2/25/2014.
|
||||
*/
|
||||
public static class DummyPatientResourceProvider implements IResourceProvider {
|
||||
|
||||
@Search(queryName = "normalInclude")
|
||||
public List<Patient> normalInclude() {
|
||||
Organization o1 = new Organization();
|
||||
o1.getNameElement().setValue("o1");
|
||||
o1.setId("o1");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.setId("p1");
|
||||
p1.addIdentifier().setLabel("p1");
|
||||
p1.getManagingOrganization().setResource(o1);
|
||||
|
||||
Patient p2 = new Patient();
|
||||
p2.setId("p2");
|
||||
p2.addIdentifier().setLabel("p2");
|
||||
p2.getManagingOrganization().setResource(o1);
|
||||
|
||||
return Arrays.asList(p1, p2);
|
||||
}
|
||||
|
||||
|
||||
@Search(queryName = "extInclude")
|
||||
public List<Patient> extInclude() {
|
||||
Organization o1 = new Organization();
|
||||
o1.getNameElement().setValue("o1");
|
||||
o1.setId("o1");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.setId("p1");
|
||||
p1.addIdentifier().setLabel("p1");
|
||||
p1.addUndeclaredExtension(false, "http://foo", new ResourceReferenceDt(o1));
|
||||
|
||||
Patient p2 = new Patient();
|
||||
p2.setId("p2");
|
||||
p2.addIdentifier().setLabel("p2");
|
||||
p2.addUndeclaredExtension(false, "http://foo", new ResourceReferenceDt(o1));
|
||||
|
||||
return Arrays.asList(p1, p2);
|
||||
}
|
||||
|
||||
@Search(queryName = "declaredExtInclude")
|
||||
public List<ExtPatient> declaredExtInclude() {
|
||||
Organization o1 = new Organization();
|
||||
o1.getNameElement().setValue("o1");
|
||||
o1.setId("o1");
|
||||
|
||||
Organization o2 = new Organization();
|
||||
o2.getNameElement().setValue("o2");
|
||||
o2.setId("o2");
|
||||
o1.getPartOf().setResource(o2);
|
||||
|
||||
ExtPatient p1 = new ExtPatient();
|
||||
p1.setId("p1");
|
||||
p1.addIdentifier().setLabel("p1");
|
||||
p1.getSecondOrg().setResource(o1);
|
||||
|
||||
ExtPatient p2 = new ExtPatient();
|
||||
p2.setId("p2");
|
||||
p2.addIdentifier().setLabel("p2");
|
||||
p2.getSecondOrg().setResource(o1);
|
||||
|
||||
return Arrays.asList(p1, p2);
|
||||
}
|
||||
|
||||
|
||||
@Search(queryName = "containedInclude")
|
||||
public List<Patient> containedInclude() {
|
||||
Organization o1 = new Organization();
|
||||
o1.getNameElement().setValue("o1");
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.setId("p1");
|
||||
p1.addIdentifier().setLabel("p1");
|
||||
p1.getManagingOrganization().setResource(o1);
|
||||
|
||||
Patient p2 = new Patient();
|
||||
p2.setId("p2");
|
||||
p2.addIdentifier().setLabel("p2");
|
||||
p2.getManagingOrganization().setResource(o1);
|
||||
|
||||
return Arrays.asList(p1, p2);
|
||||
}
|
||||
|
||||
@Search
|
||||
public List<Patient> findPatient(@RequiredParam(name = Patient.SP_NAME) StringDt theName, @IncludeParam(allow = { "foo", "bar" }) Set<Include> theIncludes) {
|
||||
ArrayList<Patient> retVal = new ArrayList<Patient>();
|
||||
|
||||
Patient p = new Patient();
|
||||
p.addIdentifier().setSystem("foo").setValue("bar");
|
||||
|
||||
p.setId(theName.getValue());
|
||||
|
||||
if (theIncludes != null) {
|
||||
for (Include next : theIncludes) {
|
||||
p.addName().addFamily().setValue(next.getValue());
|
||||
}
|
||||
}
|
||||
retVal.add(p);
|
||||
|
||||
return retVal;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Class<? extends IResource> getResourceType() {
|
||||
return Patient.class;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
public static void main(String[] args) {
|
||||
|
||||
Organization org = new Organization();
|
||||
org.setId("Organization/65546");
|
||||
org.getNameElement().setValue("Contained Test Organization");
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.setId("Patient/1333");
|
||||
patient.addIdentifier().setSystem("urn:mrns").setValue("253345");
|
||||
patient.getManagingOrganization().setResource(patient);
|
||||
|
||||
|
||||
System.out.println(new FhirContext().newXmlParser().setPrettyPrint(true).encodeResourceToString(patient));
|
||||
|
||||
patient.getManagingOrganization().getReference();
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -17,6 +17,7 @@
|
|||
</link>
|
||||
<entry>
|
||||
<status value="update"/>
|
||||
<search value="http://foo?search"/>
|
||||
<resource>
|
||||
<MedicationPrescription>
|
||||
<id value="3123"/>
|
||||
|
|
|
|||
|
|
@ -0,0 +1,85 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<Bundle xmlns="http://hl7.org/fhir">
|
||||
<id value="example"/>
|
||||
<meta>
|
||||
<versionId value="1"/>
|
||||
<lastUpdated value="2014-08-18T01:43:30Z"/>
|
||||
</meta>
|
||||
<type value="transaction"/>
|
||||
<base value="http://example.com/base"/>
|
||||
<total value="3"/>
|
||||
<link>
|
||||
<relation value="next"/>
|
||||
<url value="https://example.com/base/MedicationPrescription?patient=347&searchId=ff15fd40-ff71-4b48-b366-09c706bed9d0&page=2"/>
|
||||
</link>
|
||||
<link>
|
||||
<relation value="self"/>
|
||||
<url value="https://example.com/base/MedicationPrescription?patient=347"/>
|
||||
</link>
|
||||
<entry>
|
||||
<status value="update"/>
|
||||
<resource>
|
||||
<MedicationPrescription>
|
||||
<id value="3123"/>
|
||||
<meta>
|
||||
<versionId value="1"/>
|
||||
<lastUpdated value="2014-08-16T05:31:17Z"/>
|
||||
</meta>
|
||||
<text>
|
||||
<status value="generated"/>
|
||||
<div xmlns="http://www.w3.org/1999/xhtml">
|
||||
<p>Penicillin VK 5ml suspension to be administered by oral route</p>
|
||||
<p>ONE 5ml spoonful to be taken THREE times a day</p>
|
||||
<p>100ml bottle</p>
|
||||
<p>to patient ref: a23</p>
|
||||
<p>by doctor X</p>
|
||||
</div>
|
||||
</text>
|
||||
<status value="active"/>
|
||||
<patient>
|
||||
<reference value="Patient/example"/>
|
||||
</patient>
|
||||
<prescriber>
|
||||
<reference value="Practitioner/example"/>
|
||||
</prescriber>
|
||||
|
||||
<medication>
|
||||
<reference value="Medication/example"/>
|
||||
</medication>
|
||||
|
||||
<dosageInstruction>
|
||||
<scheduledTiming>
|
||||
<repeat>
|
||||
<frequency value="3"/>
|
||||
<duration value="1"/>
|
||||
<units value="d"/>
|
||||
</repeat>
|
||||
</scheduledTiming>
|
||||
<route>
|
||||
<coding>
|
||||
<system value="http://snomed.info/sct"/>
|
||||
<code value="394899003"/>
|
||||
<display value="oral administration of treatment"/>
|
||||
</coding>
|
||||
</route>
|
||||
<doseQuantity>
|
||||
<value value="5"/>
|
||||
<units value="ml"/>
|
||||
<system value="http://unitsofmeasure.org"/>
|
||||
<code value="ml"/>
|
||||
</doseQuantity>
|
||||
</dosageInstruction>
|
||||
|
||||
<dispense>
|
||||
<quantity>
|
||||
<value value="100"/>
|
||||
<units value="ml"/>
|
||||
<system value="http://unitsofmeasure.org"/>
|
||||
<code value="ml"/>
|
||||
</quantity>
|
||||
</dispense>
|
||||
|
||||
</MedicationPrescription>
|
||||
</resource>
|
||||
</entry>
|
||||
</Bundle>
|
||||
|
|
@ -0,0 +1,694 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
||||
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
|
||||
|
||||
<parent>
|
||||
<groupId>org.sonatype.oss</groupId>
|
||||
<artifactId>oss-parent</artifactId>
|
||||
<version>9</version>
|
||||
</parent>
|
||||
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<packaging>pom</packaging>
|
||||
<version>0.9-SNAPSHOT</version>
|
||||
<name>HAPI-FHIR</name>
|
||||
<url>http://hl7api.sourceforge.net/hapi-fhir/</url>
|
||||
|
||||
<organization>
|
||||
<name>University Health Network</name>
|
||||
<url>http://www.uhn.ca</url>
|
||||
</organization>
|
||||
|
||||
<inceptionYear>2014</inceptionYear>
|
||||
|
||||
<issueManagement>
|
||||
<system>GitHub</system>
|
||||
<url>https://github.com/jamesagnew/hapi-fhir/issues/</url>
|
||||
</issueManagement>
|
||||
|
||||
<distributionManagement>
|
||||
<site>
|
||||
<id>git.server</id>
|
||||
<url>scm:git:git@github.com:jamesagnew/hapi-fhir.git</url>
|
||||
</site>
|
||||
</distributionManagement>
|
||||
|
||||
<scm>
|
||||
<connection>scm:git:git@github.com:jamesagnew/hapi-fhir.git</connection>
|
||||
<url>scm:git:git@github.com:jamesagnew/hapi-fhir.git</url>
|
||||
<developerConnection>scm:git:git@github.com:jamesagnew/hapi-fhir.git</developerConnection>
|
||||
</scm>
|
||||
|
||||
<description>
|
||||
</description>
|
||||
|
||||
<dependencies>
|
||||
</dependencies>
|
||||
|
||||
<prerequisites>
|
||||
<maven>3.0.1</maven>
|
||||
</prerequisites>
|
||||
|
||||
<developers>
|
||||
<developer>
|
||||
<id>jamesagnew</id>
|
||||
<name>James Agnew</name>
|
||||
<organization>University Health Network</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<name>Dmitri Sotnikov</name>
|
||||
<organization>University Health Network</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<name>Lisa Wong</name>
|
||||
<organization>University Health Network</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<name>Josh Mandel</name>
|
||||
<organization>Boston Children's Hospital</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<id>lmds</id>
|
||||
<name>Laura MacDougall Sookraj</name>
|
||||
<organization>University Health Network</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<name>Neal Acharya</name>
|
||||
<organization>University Health Network</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<name>David Hay</name>
|
||||
<organization>Orion Health</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<id>suranga</id>
|
||||
<name>Suranga Nath Kasthurirathne</name>
|
||||
<organization>OpenMRS / Regenstrief Center for Biomedical Informatics</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<id>dougmartin</id>
|
||||
<name>Doug Martin</name>
|
||||
<organization>Regenstrief Center for Biomedical Informatics</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<id>akley</id>
|
||||
<name>Alexander Kley</name>
|
||||
</developer>
|
||||
<developer>
|
||||
<id>preston</id>
|
||||
<name>Preston Lee</name>
|
||||
<organization>Arizona State University</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<id>jjathman</id>
|
||||
<name>Joe Athman</name>
|
||||
</developer>
|
||||
<developer>
|
||||
<id>petromykhailysyn</id>
|
||||
<name>Petro Mykhailyshyn</name>
|
||||
</developer>
|
||||
<developer>
|
||||
<id>tahurac</id>
|
||||
<name>Tahura Chaudhry</name>
|
||||
<organization>University Health Network</organization>
|
||||
</developer>
|
||||
<developer>
|
||||
<id>b.debeaubien</id>
|
||||
<name>Bill de Beaubien</name>
|
||||
<organization>Systems Made Simple</organization>
|
||||
</developer>
|
||||
</developers>
|
||||
|
||||
<licenses>
|
||||
<license>
|
||||
<name>Apache Software License 2.0</name>
|
||||
<url>https://www.apache.org/licenses/LICENSE-2.0.txt</url>
|
||||
</license>
|
||||
</licenses>
|
||||
|
||||
<properties>
|
||||
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
|
||||
|
||||
<!-- For site-deploy -->
|
||||
<siteMainDirectory>${user.home}/sites/hapi-fhir</siteMainDirectory>
|
||||
<scmPubCheckoutDirectory>${user.home}/sites/scm/hapi-fhir</scmPubCheckoutDirectory>
|
||||
|
||||
<!-- Plugin Versions -->
|
||||
<apache_httpclient_version>4.3.6</apache_httpclient_version>
|
||||
<apache_httpcore_version>4.4</apache_httpcore_version>
|
||||
<commons_io_version>2.4</commons_io_version>
|
||||
<commons_lang_version>3.3.2</commons_lang_version>
|
||||
<commons_codec_version>1.10</commons_codec_version>
|
||||
<derby_version>10.11.1.1</derby_version>
|
||||
<guava_version>18.0</guava_version>
|
||||
<hamcrest_version>1.3</hamcrest_version>
|
||||
<hibernate_version>4.3.7.Final<!-- 4.2.12.Final --></hibernate_version>
|
||||
<hibernate_validator_version>5.1.0.Final</hibernate_validator_version>
|
||||
<jetty_version>9.2.6.v20141205</jetty_version>
|
||||
<jscience_version>4.3.1</jscience_version>
|
||||
<junit_version>4.12</junit_version>
|
||||
<logback_version>1.1.2</logback_version>
|
||||
<maven_assembly_plugin_version>2.4.1</maven_assembly_plugin_version>
|
||||
<maven_javadoc_plugin_version>2.10.1</maven_javadoc_plugin_version>
|
||||
<maven_license_plugin_version>1.7</maven_license_plugin_version>
|
||||
<maven_surefire_plugin_version>2.18.1</maven_surefire_plugin_version>
|
||||
<maven_site_plugin_version>3.4</maven_site_plugin_version>
|
||||
<maven_source_plugin_version>2.3</maven_source_plugin_version>
|
||||
<mitreid-connect-version>1.1.8</mitreid-connect-version>
|
||||
<mockito_version>1.10.17</mockito_version>
|
||||
<phloc_schematron_version>2.7.1</phloc_schematron_version>
|
||||
<phloc_commons_version>4.3.5</phloc_commons_version>
|
||||
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
|
||||
<servlet_api_version>3.1.0</servlet_api_version>
|
||||
<slf4j_version>1.7.9</slf4j_version>
|
||||
<spring_version>4.1.3.RELEASE</spring_version>
|
||||
<spring_security_version>3.2.4.RELEASE</spring_security_version>
|
||||
<thymeleaf-version>2.1.4.RELEASE</thymeleaf-version>
|
||||
<ebay_cors_filter_version>1.0.1</ebay_cors_filter_version>
|
||||
<woodstox_version>4.4.0</woodstox_version>
|
||||
</properties>
|
||||
|
||||
<build>
|
||||
<pluginManagement>
|
||||
<plugins>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-compiler-plugin</artifactId>
|
||||
<version>3.2</version>
|
||||
<configuration>
|
||||
<source>1.6</source>
|
||||
<target>1.6</target>
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-surefire-plugin</artifactId>
|
||||
<version>${maven_surefire_plugin_version}</version>
|
||||
<configuration>
|
||||
<redirectTestOutputToFile>true</redirectTestOutputToFile>
|
||||
<runOrder>random</runOrder>
|
||||
<<<<<<< HEAD
|
||||
=======
|
||||
<!--<argLine>-Dfile.encoding=ISO-8859-1</argLine> -->
|
||||
>>>>>>> 8c96bf7d9ef6d6c590c3c7420c293b815935b336
|
||||
<argLine>-Dfile.encoding=UTF-8</argLine>
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-site-plugin</artifactId>
|
||||
<version>${maven_site_plugin_version}</version>
|
||||
<dependencies>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven.wagon</groupId>
|
||||
<artifactId>wagon-ssh</artifactId>
|
||||
<version>1.0</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven.doxia</groupId>
|
||||
<artifactId>doxia-module-markdown</artifactId>
|
||||
<version>1.6</version>
|
||||
</dependency>
|
||||
</dependencies>
|
||||
<configuration>
|
||||
<skip>true</skip>
|
||||
<skipDeploy>true</skipDeploy>
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-deploy-plugin</artifactId>
|
||||
<version>2.8.1</version>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-javadoc-plugin</artifactId>
|
||||
<version>${maven_javadoc_plugin_version}</version>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-source-plugin</artifactId>
|
||||
<version>${maven_source_plugin_version}</version>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.codehaus.mojo</groupId>
|
||||
<artifactId>license-maven-plugin</artifactId>
|
||||
<version>${maven_license_plugin_version}</version>
|
||||
<configuration>
|
||||
<verbose>true</verbose>
|
||||
<addSvnKeyWords>false</addSvnKeyWords>
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<artifactId>maven-site-plugin</artifactId>
|
||||
<version>${maven_site_plugin_version}</version>
|
||||
<configuration>
|
||||
<skip>false</skip>
|
||||
<skipDeploy>true</skipDeploy>
|
||||
</configuration>
|
||||
<dependencies>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven.wagon</groupId>
|
||||
<artifactId>wagon-scm</artifactId>
|
||||
<version>2.2</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven.scm</groupId>
|
||||
<artifactId>maven-scm-manager-plexus</artifactId>
|
||||
<version>1.9</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven.scm</groupId>
|
||||
<artifactId>maven-scm-provider-gitexe</artifactId>
|
||||
<version>1.9</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.maven.scm</groupId>
|
||||
<artifactId>maven-scm-api</artifactId>
|
||||
<version>1.9</version>
|
||||
</dependency>
|
||||
</dependencies>
|
||||
</plugin>
|
||||
<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself.-->
|
||||
<plugin>
|
||||
<groupId>org.eclipse.m2e</groupId>
|
||||
<artifactId>lifecycle-mapping</artifactId>
|
||||
<version>1.0.0</version>
|
||||
<configuration>
|
||||
<lifecycleMappingMetadata>
|
||||
<pluginExecutions>
|
||||
<pluginExecution>
|
||||
<pluginExecutionFilter>
|
||||
<groupId>
|
||||
ca.uhn.hapi.fhir
|
||||
</groupId>
|
||||
<artifactId>
|
||||
hapi-tinder-plugin
|
||||
</artifactId>
|
||||
<versionRange>
|
||||
[0.8-SNAPSHOT,)
|
||||
</versionRange>
|
||||
<goals>
|
||||
<goal>
|
||||
generate-jparest-server
|
||||
</goal>
|
||||
</goals>
|
||||
</pluginExecutionFilter>
|
||||
<action>
|
||||
<ignore></ignore>
|
||||
</action>
|
||||
</pluginExecution>
|
||||
<pluginExecution>
|
||||
<pluginExecutionFilter>
|
||||
<groupId>
|
||||
org.apache.maven.plugins
|
||||
</groupId>
|
||||
<artifactId>
|
||||
maven-antrun-plugin
|
||||
</artifactId>
|
||||
<versionRange>
|
||||
[1.7,)
|
||||
</versionRange>
|
||||
<goals>
|
||||
<goal>run</goal>
|
||||
</goals>
|
||||
</pluginExecutionFilter>
|
||||
<action>
|
||||
<ignore></ignore>
|
||||
</action>
|
||||
</pluginExecution>
|
||||
</pluginExecutions>
|
||||
</lifecycleMappingMetadata>
|
||||
</configuration>
|
||||
</plugin>
|
||||
</plugins>
|
||||
</pluginManagement>
|
||||
<plugins>
|
||||
<plugin>
|
||||
<artifactId>maven-antrun-plugin</artifactId>
|
||||
<version>1.7</version>
|
||||
<inherited>false</inherited>
|
||||
<executions>
|
||||
<execution>
|
||||
<id>copySubProjects</id>
|
||||
<phase>site</phase>
|
||||
<goals>
|
||||
<goal>run</goal>
|
||||
</goals>
|
||||
<configuration>
|
||||
<target>
|
||||
<copy todir="target/site/apidocs">
|
||||
<fileset dir="hapi-fhir-base/target/site/apidocs"/>
|
||||
</copy>
|
||||
<copy todir="target/site/apidocs-dstu">
|
||||
<fileset dir="hapi-fhir-structures-dstu/target/site/apidocs"/>
|
||||
</copy>
|
||||
<copy todir="target/site/apidocs-dev">
|
||||
<fileset dir="hapi-fhir-structures-dev/target/site/apidocs"/>
|
||||
</copy>
|
||||
</target>
|
||||
</configuration>
|
||||
</execution>
|
||||
<execution>
|
||||
<id>addSyntaxHighlighter</id>
|
||||
<phase>site</phase>
|
||||
<goals>
|
||||
<goal>run</goal>
|
||||
</goals>
|
||||
<configuration>
|
||||
<target>
|
||||
<echo>Adding Syntax Highlighter</echo>
|
||||
<replace dir="target/site" summary="true">
|
||||
<include name="*.html"></include>
|
||||
<replacetoken><![CDATA[</body>]]></replacetoken>
|
||||
<replacevalue><![CDATA[
|
||||
<script type="text/javascript">
|
||||
var elements = document.getElementsByClassName("source");
|
||||
for (var i=0; i < elements.length; i++) {
|
||||
var pres = elements[i].getElementsByTagName("pre");
|
||||
for (var j = 0; j < pres.length; j++) {
|
||||
var pre = pres[j];
|
||||
if (pre.innerHTML.match(/\/\*/)) {
|
||||
pre.className = 'brush: java';
|
||||
} else if (pre.innerHTML.match(/^\/\//)) {
|
||||
pre.className = 'brush: java';
|
||||
} else if (pre.innerHTML.match(/^\{/)) {
|
||||
pre.className = 'brush: jscript';
|
||||
} else if (pre.innerHTML.match(/^\#/)) {
|
||||
pre.className = 'brush: bash';
|
||||
} else if (pre.innerHTML.match(/\<\;\//)) {
|
||||
pre.className = 'brush: xml';
|
||||
} else {
|
||||
pre.className = 'brush: java';
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
SyntaxHighlighter.all();
|
||||
</script>
|
||||
</body>
|
||||
]]></replacevalue>
|
||||
</replace>
|
||||
</target>
|
||||
</configuration>
|
||||
</execution>
|
||||
<execution>
|
||||
<id>addAnalytics</id>
|
||||
<phase>post-site</phase>
|
||||
<configuration>
|
||||
<target>
|
||||
<echo>Adding Google analytics in target/site for <body></echo>
|
||||
<replace dir="target/site" summary="true">
|
||||
<include name="**/*.html"></include>
|
||||
<replacefilter token="#build#" value="${label}" />
|
||||
<replacefilter token="#version#" value="${project.version}" />
|
||||
<replacetoken><![CDATA[</body>]]></replacetoken>
|
||||
<replacevalue><![CDATA[
|
||||
<script>
|
||||
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
|
||||
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
|
||||
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
|
||||
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
|
||||
|
||||
ga('create', 'UA-1395874-5', 'auto');
|
||||
ga('require', 'displayfeatures');
|
||||
ga('require', 'linkid', 'linkid.js');
|
||||
ga('send', 'pageview');
|
||||
|
||||
</script>
|
||||
</body >
|
||||
]]></replacevalue>
|
||||
</replace>
|
||||
<echo>Adding Google analytics in target/site for <BODY></echo>
|
||||
<replace dir="target/site" summary="true">
|
||||
<include name="**/*.html"></include>
|
||||
<replacetoken><![CDATA[</BODY>]]></replacetoken>
|
||||
<replacevalue><![CDATA[
|
||||
<script>
|
||||
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
|
||||
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
|
||||
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
|
||||
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
|
||||
|
||||
ga('create', 'UA-1395874-5', 'auto');
|
||||
ga('require', 'displayfeatures');
|
||||
ga('require', 'linkid', 'linkid.js');
|
||||
ga('send', 'pageview');
|
||||
|
||||
</script>
|
||||
</BODY >
|
||||
]]></replacevalue>
|
||||
</replace>
|
||||
<echo>Adding social plugins for HAPI</echo>
|
||||
<replace dir="target/site/" summary="true">
|
||||
<include name="**/*.html"></include>
|
||||
<replacetoken><![CDATA[SOCIALPLUGINSHEREFHIR]]></replacetoken>
|
||||
<replacevalue><![CDATA[
|
||||
<table cellpadding="0" cellspacing="0" border="0"><tr>
|
||||
<td><div class="g-plusone" data-annotation="inline" data-width="300" data-href="http://hl7api.sourceforge.net/"></div></td>
|
||||
<td><div class="fb-like" data-href="http://hl7api.sourceforge.net/" data-send="false" data-layout="button_count" data-width="450" data-show-faces="true"></div></td>
|
||||
</tr></table>
|
||||
|
||||
</p><p>
|
||||
<!-- Place this tag after the last +1 button tag. -->
|
||||
<script type="text/javascript">
|
||||
(function() {
|
||||
var po = document.createElement('script'); po.type = 'text/javascript'; po.async = true;
|
||||
po.src = 'https://apis.google.com/js/plusone.js';
|
||||
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(po, s);
|
||||
})();
|
||||
</script>
|
||||
<div id="fb-root"></div>
|
||||
<script>(function(d, s, id) {
|
||||
var js, fjs = d.getElementsByTagName(s)[0];
|
||||
if (d.getElementById(id)) return;
|
||||
js = d.createElement(s); js.id = id;
|
||||
js.src = "//connect.facebook.net/en_US/all.js#xfbml=1";
|
||||
fjs.parentNode.insertBefore(js, fjs);
|
||||
}(document, 'script', 'facebook-jssdk'));</script>
|
||||
]]></replacevalue>
|
||||
</replace>
|
||||
|
||||
|
||||
</target>
|
||||
</configuration>
|
||||
<goals>
|
||||
<goal>run</goal>
|
||||
</goals>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.codehaus.mojo</groupId>
|
||||
<artifactId>animal-sniffer-maven-plugin</artifactId>
|
||||
<version>1.12</version>
|
||||
<inherited>true</inherited>
|
||||
<configuration>
|
||||
<signature>
|
||||
<groupId>org.codehaus.mojo.signature</groupId>
|
||||
<artifactId>java16</artifactId>
|
||||
<version>1.01</version>
|
||||
</signature>
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<artifactId>maven-site-plugin</artifactId>
|
||||
<inherited>false</inherited>
|
||||
<executions>
|
||||
<execution>
|
||||
<id>stage-for-scm-publish</id>
|
||||
<phase>post-site</phase>
|
||||
<goals>
|
||||
<goal>stage</goal>
|
||||
</goals>
|
||||
<configuration>
|
||||
<stagingDirectory>${siteMainDirectory}</stagingDirectory>
|
||||
</configuration>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-scm-publish-plugin</artifactId>
|
||||
<version>1.1</version>
|
||||
<inherited>false</inherited>
|
||||
<configuration>
|
||||
<checkoutDirectory>${scmPubCheckoutDirectory}</checkoutDirectory>
|
||||
<content>\${siteMainDirectory}</content>
|
||||
<tryUpdate>true</tryUpdate>
|
||||
<scmBranch>gh-pages</scmBranch>
|
||||
<pubScmUrl>scm:git:git@github.com:jamesagnew/hapi-fhir.git</pubScmUrl>
|
||||
</configuration>
|
||||
<executions>
|
||||
<execution>
|
||||
<id>scm-publish</id>
|
||||
<phase>site-deploy</phase>
|
||||
<goals>
|
||||
<goal>publish-scm</goal>
|
||||
</goals>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
</plugins>
|
||||
</build>
|
||||
|
||||
<reporting>
|
||||
<plugins>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-changes-plugin</artifactId>
|
||||
<version>2.11</version>
|
||||
<inherited>false</inherited>
|
||||
<reportSets>
|
||||
<reportSet>
|
||||
<reports>
|
||||
<report>changes-report</report>
|
||||
</reports>
|
||||
</reportSet>
|
||||
</reportSets>
|
||||
<configuration>
|
||||
<feedType>atom_1.0</feedType>
|
||||
<issueLinkTemplatePerSystem>
|
||||
<default>https://github.com/jamesagnew/hapi-fhir/issues/%ISSUE%</default>
|
||||
</issueLinkTemplatePerSystem>
|
||||
<escapeHTML>false</escapeHTML>
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-surefire-report-plugin</artifactId>
|
||||
<version>${maven_surefire_plugin_version}</version>
|
||||
<configuration>
|
||||
<aggregate>true</aggregate>
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-project-info-reports-plugin</artifactId>
|
||||
<version>2.7</version>
|
||||
<inherited>false</inherited>
|
||||
<reportSets>
|
||||
<reportSet>
|
||||
<reports>
|
||||
<report>project-team</report>
|
||||
<report>issue-tracking</report>
|
||||
<report>license</report>
|
||||
<report>scm</report>
|
||||
</reports>
|
||||
</reportSet>
|
||||
</reportSets>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.codehaus.mojo</groupId>
|
||||
<artifactId>findbugs-maven-plugin</artifactId>
|
||||
<version>3.0.0</version>
|
||||
<configuration>
|
||||
<classFilesDirectory>./hapi-fhir-base/target/classes</classFilesDirectory>
|
||||
</configuration>
|
||||
<reportSets>
|
||||
<reportSet>
|
||||
<reports>
|
||||
<report>findbugs</report>
|
||||
</reports>
|
||||
</reportSet>
|
||||
</reportSets>
|
||||
</plugin>
|
||||
|
||||
<!-- <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-linkcheck-plugin</artifactId>
|
||||
<version>1.1</version> </plugin> -->
|
||||
</plugins>
|
||||
</reporting>
|
||||
|
||||
<profiles>
|
||||
<profile>
|
||||
<id>ROOT</id>
|
||||
<modules>
|
||||
</modules>
|
||||
<build>
|
||||
<plugins>
|
||||
<!--
|
||||
<plugin>
|
||||
<artifactId>maven-assembly-plugin</artifactId>
|
||||
<version>${maven_assembly_plugin_version}</version>
|
||||
<executions>
|
||||
<execution>
|
||||
<phase>package</phase>
|
||||
<goals>
|
||||
<goal>single</goal>
|
||||
</goals>
|
||||
<configuration>
|
||||
<attach>false</attach>
|
||||
<descriptors>
|
||||
<descriptor>${project.basedir}/src/assembly/hapi-fhir-sample-projects.xml</descriptor>
|
||||
</descriptors>
|
||||
</configuration>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
-->
|
||||
</plugins>
|
||||
</build>
|
||||
</profile>
|
||||
<profile>
|
||||
<id>SIGN_ARTIFACTS</id>
|
||||
<activation>
|
||||
<property>
|
||||
<name>gpg.passphrase</name>
|
||||
</property>
|
||||
</activation>
|
||||
<build>
|
||||
<plugins>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-gpg-plugin</artifactId>
|
||||
<version>1.5</version>
|
||||
<executions>
|
||||
<execution>
|
||||
<id>sign-artifacts</id>
|
||||
<phase>verify</phase>
|
||||
<goals>
|
||||
<goal>sign</goal>
|
||||
</goals>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
</plugins>
|
||||
</build>
|
||||
</profile>
|
||||
<profile>
|
||||
<id>SITE</id>
|
||||
<modules>
|
||||
<module>hapi-fhir-base</module>
|
||||
<module>hapi-fhir-structures-dstu</module>
|
||||
<module>hapi-fhir-structures-dev</module>
|
||||
<module>examples</module>
|
||||
</modules>
|
||||
</profile>
|
||||
<profile>
|
||||
<id>ALLMODULES</id>
|
||||
<activation>
|
||||
<activeByDefault>true</activeByDefault>
|
||||
</activation>
|
||||
<modules>
|
||||
<module>hapi-deployable-pom</module>
|
||||
<module>hapi-fhir-base</module>
|
||||
<!--<module>hapi-fhir-oauth2</module>-->
|
||||
<module>hapi-fhir-base/testmindeps</module>
|
||||
<module>hapi-tinder-plugin</module>
|
||||
<module>hapi-tinder-test</module>
|
||||
<module>hapi-fhir-structures-dstu</module>
|
||||
<module>hapi-fhir-structures-dev</module>
|
||||
<module>hapi-fhir-jpaserver-base</module>
|
||||
<module>hapi-fhir-jpaserver-test</module>
|
||||
<module>restful-server-example</module>
|
||||
<module>restful-server-example-test</module>
|
||||
<module>hapi-fhir-testpage-overlay</module>
|
||||
<module>hapi-fhir-jpaserver-uhnfhirtest</module>
|
||||
<!-- <module>hapi-fhir-dist</module> -->
|
||||
</modules>
|
||||
</profile>
|
||||
</profiles>
|
||||
|
||||
</project>
|
||||
Loading…
Reference in New Issue