Ensure "Device" is not considered as a resource type for R5 (#5909)

* Preliminary fix.

* Refine fix.  Refine existing tests.  Rename existing test to R4.  Disable tests that don't work due to newly discovered bug with R5 POST poll.  Reverse logging changes and TODOs.

* Reverse more logging changes.

* Check for whitelist of FHIR versions that support device in patient compartment.

* Refine solution.  Add a new test.

* Add changelog.

* Code review fix.

hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/7_4_0/5913-bulk-export-r5-fails-resource-not-found.yaml

@@ -0,0 +1,5 @@
+---
+type: fix
+issue: 5913
+title: "Bulk export was failing with a HAPI-2222 error with the persistence module configured for R5.
+        This has been fixed."

hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/bulk/BulkDataExportProviderR4Test.java

@@ -45,7 +45,6 @@ import org.hl7.fhir.r4.model.IdType;
 import org.hl7.fhir.r4.model.InstantType;
 import org.hl7.fhir.r4.model.Parameters;
 import org.hl7.fhir.r4.model.StringType;
-import org.jetbrains.annotations.NotNull;
 import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
 import org.junit.jupiter.api.extension.ExtendWith;
@@ -97,10 +96,10 @@ import static org.mockito.Mockito.verify;
 import static org.mockito.Mockito.when;
 
 @ExtendWith(MockitoExtension.class)
-public class BulkDataExportProviderTest {
+public class BulkDataExportProviderR4Test {
 
 	private static final String A_JOB_ID = "0000000-AAAAAA";
-	private static final Logger ourLog = LoggerFactory.getLogger(BulkDataExportProviderTest.class);
+	private static final Logger ourLog = LoggerFactory.getLogger(BulkDataExportProviderR4Test.class);
 	private static final String GROUP_ID = "Group/G2401";
 	private static final String G_JOB_ID = "0000000-GGGGGG";
 	@Spy
@@ -1298,7 +1297,7 @@ public class BulkDataExportProviderTest {
 
 	private class MyRequestPartitionHelperSvc extends RequestPartitionHelperSvc {
 		@Override
-		public @NotNull RequestPartitionId determineReadPartitionForRequest(@Nonnull RequestDetails theRequest, @Nonnull ReadPartitionIdRequestDetails theDetails) {
+		public @Nonnull RequestPartitionId determineReadPartitionForRequest(@Nonnull RequestDetails theRequest, @Nonnull ReadPartitionIdRequestDetails theDetails) {
 			assert theRequest != null;
 			if (myPartitionName.equals(theRequest.getTenantId())) {
 				return myRequestPartitionId;

hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/export/BulkDataExportProvider.java

@@ -25,6 +25,7 @@ import ca.uhn.fhir.batch2.model.JobInstance;
 import ca.uhn.fhir.batch2.model.JobInstanceStartRequest;
 import ca.uhn.fhir.batch2.model.StatusEnum;
 import ca.uhn.fhir.context.FhirContext;
+import ca.uhn.fhir.context.FhirVersionEnum;
 import ca.uhn.fhir.i18n.Msg;
 import ca.uhn.fhir.interceptor.api.HookParams;
 import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
@@ -99,6 +100,13 @@ public class BulkDataExportProvider {
 	public static final String UNSUPPORTED_BINARY_TYPE = "Binary";
 
 	private static final Logger ourLog = getLogger(BulkDataExportProvider.class);
+	private static final Set<FhirVersionEnum> PATIENT_COMPARTMENT_FHIR_VERSIONS_SUPPORT_DEVICE = Set.of(
+			FhirVersionEnum.DSTU2,
+			FhirVersionEnum.DSTU2_1,
+			FhirVersionEnum.DSTU2_HL7ORG,
+			FhirVersionEnum.DSTU3,
+			FhirVersionEnum.R4,
+			FhirVersionEnum.R4B);
 
 	@Autowired
 	private IInterceptorBroadcaster myInterceptorBroadcaster;
@@ -344,11 +352,19 @@ public class BulkDataExportProvider {
 	}
 
 	private Set<String> getPatientCompartmentResources() {
+		return getPatientCompartmentResources(myFhirContext);
+	}
+
+	@VisibleForTesting
+	Set<String> getPatientCompartmentResources(FhirContext theFhirContext) {
 		if (myCompartmentResources == null) {
 			myCompartmentResources =
-					new HashSet<>(SearchParameterUtil.getAllResourceTypesThatAreInPatientCompartment(myFhirContext));
+					new HashSet<>(SearchParameterUtil.getAllResourceTypesThatAreInPatientCompartment(theFhirContext));
+			if (isDeviceResourceSupportedForPatientCompartmentForFhirVersion(
+					theFhirContext.getVersion().getVersion())) {
 				myCompartmentResources.add("Device");
 			}
+		}
 		return myCompartmentResources;
 	}
 
@@ -803,4 +819,9 @@ public class BulkDataExportProvider {
 			throw new InvalidRequestException(Msg.code(513) + "Must request async processing for " + theOperationName);
 		}
 	}
+
+	private static boolean isDeviceResourceSupportedForPatientCompartmentForFhirVersion(
+			FhirVersionEnum theFhirVersionEnum) {
+		return PATIENT_COMPARTMENT_FHIR_VERSIONS_SUPPORT_DEVICE.contains(theFhirVersionEnum);
+	}
 }

hapi-fhir-storage-batch2-jobs/src/test/java/ca/uhn/fhir/batch2/jobs/export/BulkDataExportProviderTest.java

@@ -0,0 +1,47 @@
+package ca.uhn.fhir.batch2.jobs.export;
+
+import ca.uhn.fhir.context.FhirContext;
+import ca.uhn.fhir.context.FhirVersionEnum;
+import org.junit.jupiter.api.extension.ExtendWith;
+import org.junit.jupiter.params.ParameterizedTest;
+import org.junit.jupiter.params.provider.Arguments;
+import org.junit.jupiter.params.provider.MethodSource;
+import org.mockito.junit.jupiter.MockitoExtension;
+
+import java.util.Set;
+import java.util.stream.Stream;
+
+import static org.hamcrest.MatcherAssert.assertThat;
+import static org.hamcrest.Matchers.hasItem;
+import static org.hamcrest.Matchers.not;
+
+@ExtendWith(MockitoExtension.class)
+class BulkDataExportProviderTest {
+	private static final Set<FhirVersionEnum> PATIENT_COMPARTMENT_FHIR_VERSIONS_SUPPORT_DEVICE = Set.of(FhirVersionEnum.DSTU2, FhirVersionEnum.DSTU2_1, FhirVersionEnum.DSTU2_HL7ORG, FhirVersionEnum.DSTU3, FhirVersionEnum.R4, FhirVersionEnum.R4B);
+
+	private static Stream<Arguments> fhirContexts() {
+			return Stream.of(
+				Arguments.arguments(FhirContext.forDstu2()),
+				Arguments.arguments(FhirContext.forDstu2Cached()),
+				Arguments.arguments(FhirContext.forDstu2Hl7Org()),
+				Arguments.arguments(FhirContext.forDstu2Hl7OrgCached()),
+				Arguments.arguments(FhirContext.forDstu3()),
+				Arguments.arguments(FhirContext.forDstu3Cached()),
+				Arguments.arguments(FhirContext.forR4()),
+				Arguments.arguments(FhirContext.forR4Cached()),
+				Arguments.arguments(FhirContext.forR4B()),
+				Arguments.arguments(FhirContext.forR4BCached()),
+				Arguments.arguments(FhirContext.forR5()),
+				Arguments.arguments(FhirContext.forR5Cached())
+			);
+		}
+
+	@ParameterizedTest
+	@MethodSource("fhirContexts")
+	void checkDeviceIsSupportedInPatientCompartment(FhirContext theFhirContext) {
+		assertThat(new BulkDataExportProvider().getPatientCompartmentResources(theFhirContext),
+			PATIENT_COMPARTMENT_FHIR_VERSIONS_SUPPORT_DEVICE.contains(theFhirContext.getVersion().getVersion())
+				? hasItem("Device")
+				: not(hasItem("Device")));
+	}
+}