Move CLI App
This commit is contained in:
James Agnew
parent
914f615b8e
commit
c8cf957e7f
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@ -0,0 +1,294 @@
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<!-- Note: HAPI projects use the "hapi-fhir" POM as their base to provide easy management. You do not need to use this in your own projects, so the "parent" tag
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and it's contents below may be removed if you are using this file as a basis for your own project. -->
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-cli</artifactId>
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<version>1.4-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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</parent>
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<artifactId>hapi-fhir-cli-app</artifactId>
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<packaging>jar</packaging>
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<name>HAPI FHIR - Command Line Client - Application</name>
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<dependencies>
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<!-- This dependency includes the core HAPI-FHIR classes -->
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-base</artifactId>
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<version>1.4-SNAPSHOT</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-cli-jpaserver</artifactId>
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<version>1.4-SNAPSHOT</version>
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<type>war</type>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-cli-jpaserver</artifactId>
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<version>1.4-SNAPSHOT</version>
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<type>jar</type>
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<classifier>classes</classifier>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-testpage-overlay</artifactId>
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<version>1.4-SNAPSHOT</version>
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<classifier>classes</classifier>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu</artifactId>
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<version>1.4-SNAPSHOT</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu2</artifactId>
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<version>1.4-SNAPSHOT</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu2.1</artifactId>
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<version>1.4-SNAPSHOT</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
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<version>1.4-SNAPSHOT</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
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<version>1.4-SNAPSHOT</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu2.1</artifactId>
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<version>1.4-SNAPSHOT</version>
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</dependency>
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<dependency>
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<groupId>ch.qos.logback</groupId>
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<artifactId>logback-classic</artifactId>
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</dependency>
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<dependency>
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<groupId>javax.servlet</groupId>
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<artifactId>javax.servlet-api</artifactId>
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</dependency>
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<dependency>
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<groupId>commons-cli</groupId>
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<artifactId>commons-cli</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-core</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>commons-logging</artifactId>
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<groupId>commons-logging</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-webmvc</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-context</artifactId>
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<exclusions>
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<exclusion>
|
||||
<artifactId>xml-apis</artifactId>
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<groupId>xml-apis</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-beans</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-tx</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-context-support</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-web</artifactId>
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</dependency>
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|
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-servlets</artifactId>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-servlet</artifactId>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-server</artifactId>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-util</artifactId>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-webapp</artifactId>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty.websocket</groupId>
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<artifactId>websocket-api</artifactId>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty.websocket</groupId>
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<artifactId>websocket-client</artifactId>
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</dependency>
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<dependency>
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<groupId>org.slf4j</groupId>
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<artifactId>jcl-over-slf4j</artifactId>
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</dependency>
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<dependency>
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<groupId>org.thymeleaf</groupId>
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<artifactId>thymeleaf</artifactId>
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</dependency>
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<dependency>
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<groupId>org.thymeleaf</groupId>
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<artifactId>thymeleaf-spring4</artifactId>
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</dependency>
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<dependency>
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<groupId>org.ebaysf.web</groupId>
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<artifactId>cors-filter</artifactId>
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</dependency>
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<dependency>
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<groupId>com.phloc</groupId>
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<artifactId>phloc-schematron</artifactId>
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</dependency>
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<dependency>
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<groupId>com.phloc</groupId>
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<artifactId>phloc-commons</artifactId>
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</dependency>
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<dependency>
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<groupId>org.fusesource.jansi</groupId>
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<artifactId>jansi</artifactId>
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</dependency>
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</dependencies>
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<build>
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<plugins>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-dependency-plugin</artifactId>
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<executions>
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<execution>
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<id>copy</id>
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<phase>process-resources</phase>
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<goals>
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<goal>copy</goal>
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</goals>
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<configuration>
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<artifactItems>
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<artifactItem>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-cli-jpaserver</artifactId>
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<version>1.4-SNAPSHOT</version>
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<type>war</type>
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<overWrite>true</overWrite>
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<outputDirectory>target/classes</outputDirectory>
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<destFileName>hapi-fhir-cli-jpaserver.war</destFileName>
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</artifactItem>
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</artifactItems>
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<!-- other configurations here -->
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</configuration>
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</execution>
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</executions>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-deploy-plugin</artifactId>
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<configuration>
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<skip>true</skip>
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</configuration>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-shade-plugin</artifactId>
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<version>2.4.1</version>
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<executions>
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<execution>
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<phase>package</phase>
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<goals>
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<goal>shade</goal>
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</goals>
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<configuration>
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<finalName>hapi-fhir-cli</finalName>
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<artifactSet>
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</artifactSet>
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<transformers>
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<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
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<mainClass>ca.uhn.fhir.cli.App</mainClass>
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</transformer>
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</transformers>
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<filters>
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<filter>
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<artifact>*</artifact>
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<excludes>
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<exclude>**/*.SF</exclude>
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<exclude>**/*.RSA</exclude>
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</excludes>
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</filter>
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</filters>
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</configuration>
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</execution>
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</executions>
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</plugin>
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</plugins>
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<pluginManagement>
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<plugins>
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<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself. -->
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<plugin>
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||||
<groupId>org.eclipse.m2e</groupId>
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||||
<artifactId>lifecycle-mapping</artifactId>
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||||
<version>1.0.0</version>
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<configuration>
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<lifecycleMappingMetadata>
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<pluginExecutions>
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<pluginExecution>
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<pluginExecutionFilter>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-dependency-plugin</artifactId>
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<versionRange>[2.10,)</versionRange>
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<goals>
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<goal>copy</goal>
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||||
</goals>
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||||
</pluginExecutionFilter>
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<action>
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||||
<ignore></ignore>
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</action>
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</pluginExecution>
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||||
</pluginExecutions>
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</lifecycleMappingMetadata>
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||||
</configuration>
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||||
</plugin>
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</plugins>
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</pluginManagement>
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</build>
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</project>
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@ -117,6 +117,7 @@ public class App {
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System.out.println("\ud83d\udd25 " + ansi().bold() + "HAPI FHIR" + ansi().boldOff() + " " + VersionUtil.getVersion() + " - Command Line Tool");
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System.out.println("------------------------------------------------------------");
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System.out.println("Max configured JVM memory (Xmx): " + FileUtils.getFileSizeDisplay(Runtime.getRuntime().maxMemory(), 1));
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System.out.println("Detected Java version: " + System.getProperty("java.version"));
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System.out.println("------------------------------------------------------------");
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}
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@ -172,6 +173,7 @@ public class App {
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CommandLine parsedOptions;
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logAppHeader();
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validateJavaVersion();
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loggingConfigOn();
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try {
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@ -197,4 +199,16 @@ public class App {
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}
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private static void validateJavaVersion() {
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String specVersion = System.getProperty("java.specification.version");
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double version = Double.parseDouble(specVersion);
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if (version < 1.8) {
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System.err.flush();
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System.err.println("HAPI-CLI requires Java 1.8+ to run (detected " + specVersion + ")");
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System.err.println("Note that the HAPI library requires only Java 1.6, but you must install");
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System.err.println("a newer JVM in order to use the HAPI CLI tool.");
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System.exit(1);
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}
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}
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}
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@ -0,0 +1,71 @@
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package ca.uhn.fhir.cli;
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import org.apache.commons.cli.CommandLine;
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import org.apache.commons.cli.Option;
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import org.apache.commons.cli.Options;
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import org.apache.commons.cli.ParseException;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.context.FhirVersionEnum;
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import ca.uhn.fhir.rest.client.IGenericClient;
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public abstract class BaseCommand implements Comparable<BaseCommand> {
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private static final String SPEC_DEFAULT_VERSION = "dstu2";
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private FhirContext myFhirCtx;
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public BaseCommand() {
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super();
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}
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@Override
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public int compareTo(BaseCommand theO) {
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return getCommandName().compareTo(theO.getCommandName());
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}
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public abstract String getCommandDescription();
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public abstract String getCommandName();
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public abstract Options getOptions();
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protected IGenericClient newClient(FhirContext ctx, String theBaseUrl) {
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ctx.getRestfulClientFactory().setSocketTimeout(10 * 60 * 1000);
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IGenericClient fhirClient = ctx.newRestfulGenericClient(theBaseUrl);
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return fhirClient;
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}
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public abstract void run(CommandLine theCommandLine) throws ParseException, Exception;
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// public FhirContext getFhirCtx() {
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// if (myFhirCtx == null) {
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// myFhirCtx = FhirContext.forDstu2();
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// }
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// return myFhirCtx;
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// }
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protected void addFhirVersionOption(Options theOptions) {
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Option opt = new Option("f", "fhirversion", true, "Spec version to upload (default is '" + SPEC_DEFAULT_VERSION + "')");
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opt.setRequired(false);
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theOptions.addOption(opt);
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}
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protected FhirContext getSpecVersionContext(CommandLine theCommandLine) throws ParseException {
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if (myFhirCtx == null) {
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String specVersion = theCommandLine.getOptionValue("f", SPEC_DEFAULT_VERSION);
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FhirVersionEnum version;
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if ("dstu2".equals(specVersion)) {
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version = FhirVersionEnum.DSTU2;
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} else if ("dstu2.1".equals(specVersion)) {
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||||
version = FhirVersionEnum.DSTU2_1;
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||||
} else {
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||||
throw new ParseException("Unknown spec version: " + specVersion);
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||||
}
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||||
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||||
myFhirCtx = new FhirContext(version);
|
||||
}
|
||||
return myFhirCtx;
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||||
}
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||||
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||||
}
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||||
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@ -47,7 +47,6 @@ import ca.uhn.fhir.util.ResourceReferenceInfo;
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|||
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||||
public class ExampleDataUploader extends BaseCommand {
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||||
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||||
private static final String SPEC_DEFAULT_VERSION = "dstu2";
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||||
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||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ExampleDataUploader.class);
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||||
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||||
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@ -66,10 +65,8 @@ public class ExampleDataUploader extends BaseCommand {
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|||
Options options = new Options();
|
||||
Option opt;
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||||
|
||||
opt = new Option("f", "fhirversion", true, "Spec version to upload (default is '" + SPEC_DEFAULT_VERSION + "')");
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||||
opt.setRequired(false);
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||||
options.addOption(opt);
|
||||
|
||||
addFhirVersionOption(options);
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||||
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||||
opt = new Option("t", "target", true, "Base URL for the target server (e.g. \"http://example.com/fhir\")");
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||||
opt.setRequired(true);
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||||
options.addOption(opt);
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||||
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|
@ -87,7 +84,8 @@ public class ExampleDataUploader extends BaseCommand {
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|||
|
||||
@Override
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||||
public void run(CommandLine theCommandLine) throws Exception {
|
||||
String specVersion = theCommandLine.getOptionValue("f", SPEC_DEFAULT_VERSION);
|
||||
FhirContext ctx = getSpecVersionContext(theCommandLine);
|
||||
|
||||
String targetServer = theCommandLine.getOptionValue("t");
|
||||
if (isBlank(targetServer)) {
|
||||
throw new ParseException("No target server (-t) specified");
|
||||
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|
@ -104,17 +102,17 @@ public class ExampleDataUploader extends BaseCommand {
|
|||
}
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||||
}
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||||
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||||
FhirContext ctx;
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||||
String specUrl;
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||||
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||||
if (SPEC_DEFAULT_VERSION.equals(specVersion)) {
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||||
ctx = FhirContext.forDstu2();
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||||
specUrl = "http://hl7.org/fhir/" + specVersion + "/examples-json.zip";
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||||
} else if ("dstu2.1".equals(specVersion)) {
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||||
ctx = FhirContext.forDstu2_1();
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||||
switch (ctx.getVersion().getVersion()) {
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case DSTU2:
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||||
specUrl = "http://hl7.org/fhir/dstu2/examples-json.zip";
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||||
break;
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||||
case DSTU2_1:
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||||
specUrl = "http://hl7-fhir.github.io/examples-json.zip";
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||||
} else {
|
||||
throw new ParseException("Unknown spec version: " + specVersion);
|
||||
break;
|
||||
default:
|
||||
throw new ParseException("Invalid spec version for this command: " + ctx.getVersion().getVersion());
|
||||
}
|
||||
|
||||
ourLog.info("HTTP fetching: {}", specUrl);
|
||||
|
|
@ -0,0 +1,58 @@
|
|||
package ca.uhn.fhir.cli;
|
||||
|
||||
import org.hl7.fhir.instance.hapi.validation.IValidationSupport;
|
||||
import org.hl7.fhir.instance.model.ValueSet;
|
||||
import org.hl7.fhir.instance.model.ValueSet.ConceptSetComponent;
|
||||
import org.hl7.fhir.instance.model.ValueSet.ValueSetExpansionComponent;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.rest.client.IGenericClient;
|
||||
import ca.uhn.fhir.rest.client.ServerValidationModeEnum;
|
||||
import ca.uhn.fhir.rest.server.exceptions.BaseServerResponseException;
|
||||
|
||||
public class LoadingValidationSupportDstu2 implements IValidationSupport {
|
||||
|
||||
private static FhirContext myCtx = FhirContext.forDstu2Hl7Org();
|
||||
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(LoadingValidationSupportDstu2.class);
|
||||
|
||||
@Override
|
||||
public ValueSetExpansionComponent expandValueSet(FhirContext theContext, ConceptSetComponent theInclude) {
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public ValueSet fetchCodeSystem(FhirContext theContext, String theSystem) {
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public <T extends IBaseResource> T fetchResource(FhirContext theContext, Class<T> theClass, String theUri) {
|
||||
String resName = myCtx.getResourceDefinition(theClass).getName();
|
||||
ourLog.info("Attempting to fetch {} at URL: {}", resName, theUri);
|
||||
|
||||
myCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
|
||||
IGenericClient client = myCtx.newRestfulGenericClient("http://example.com");
|
||||
|
||||
T result;
|
||||
try {
|
||||
result = client.read(theClass, theUri);
|
||||
} catch (BaseServerResponseException e) {
|
||||
throw new CommandFailureException("FAILURE: Received HTTP " + e.getStatusCode() + ": " + e.getMessage());
|
||||
}
|
||||
ourLog.info("Successfully loaded resource");
|
||||
return result;
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean isCodeSystemSupported(FhirContext theContext, String theSystem) {
|
||||
return false;
|
||||
}
|
||||
|
||||
@Override
|
||||
public CodeValidationResult validateCode(FhirContext theContext, String theCodeSystem, String theCode, String theDisplay) {
|
||||
return null;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -11,11 +11,11 @@ import ca.uhn.fhir.rest.client.IGenericClient;
|
|||
import ca.uhn.fhir.rest.client.ServerValidationModeEnum;
|
||||
import ca.uhn.fhir.rest.server.exceptions.BaseServerResponseException;
|
||||
|
||||
public class LoadingValidationSupport implements IValidationSupport {
|
||||
public class LoadingValidationSupportDstu21 implements IValidationSupport {
|
||||
|
||||
private static FhirContext myCtx = FhirContext.forDstu2Hl7Org();
|
||||
private static FhirContext myCtx = FhirContext.forDstu2_1();
|
||||
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(LoadingValidationSupport.class);
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(LoadingValidationSupportDstu21.class);
|
||||
|
||||
@Override
|
||||
public ValueSetExpansionComponent expandValueSet(FhirContext theContext, ConceptSetComponent theInclude) {
|
||||
|
|
@ -6,13 +6,25 @@ import java.io.FileOutputStream;
|
|||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.OutputStream;
|
||||
import java.util.EventListener;
|
||||
|
||||
import javax.servlet.ServletContextEvent;
|
||||
import javax.servlet.ServletContextListener;
|
||||
|
||||
import org.apache.commons.cli.CommandLine;
|
||||
import org.apache.commons.cli.Options;
|
||||
import org.apache.commons.cli.ParseException;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.eclipse.jetty.server.Server;
|
||||
import org.eclipse.jetty.server.handler.ContextHandler;
|
||||
import org.eclipse.jetty.webapp.WebAppContext;
|
||||
import org.springframework.web.context.ContextLoader;
|
||||
import org.springframework.web.context.ContextLoaderListener;
|
||||
import org.springframework.web.context.support.AnnotationConfigWebApplicationContext;
|
||||
|
||||
import ca.uhn.fhir.jpa.demo.ContextHolder;
|
||||
import ca.uhn.fhir.jpa.demo.FhirServerConfig;
|
||||
import ca.uhn.fhir.jpa.demo.FhirServerConfigDstu21;
|
||||
|
||||
public class RunServerCommand extends BaseCommand {
|
||||
|
||||
|
|
@ -32,6 +44,7 @@ public class RunServerCommand extends BaseCommand {
|
|||
@Override
|
||||
public Options getOptions() {
|
||||
Options options = new Options();
|
||||
addFhirVersionOption(options);
|
||||
options.addOption(OPTION_P, "port", true, "The port to listen on (default is " + DEFAULT_PORT + ")");
|
||||
return options;
|
||||
}
|
||||
|
|
@ -47,6 +60,8 @@ public class RunServerCommand extends BaseCommand {
|
|||
@Override
|
||||
public void run(CommandLine theCommandLine) throws ParseException {
|
||||
myPort = parseOptionInteger(theCommandLine, OPTION_P, DEFAULT_PORT);
|
||||
|
||||
ContextHolder.setCtx(getSpecVersionContext(theCommandLine));
|
||||
|
||||
// ((ch.qos.logback.classic.Logger)LoggerFactory.getLogger("/")).setLevel(Level.ERROR);
|
||||
|
||||
|
|
@ -56,7 +71,7 @@ public class RunServerCommand extends BaseCommand {
|
|||
tempWarFile = File.createTempFile("hapi-fhir", ".war");
|
||||
tempWarFile.deleteOnExit();
|
||||
|
||||
InputStream inStream = RunServerCommand.class.getResourceAsStream("/hapi-fhir-jpaserver-example.war");
|
||||
InputStream inStream = RunServerCommand.class.getResourceAsStream("/hapi-fhir-cli-jpaserver.war");
|
||||
OutputStream outStream = new BufferedOutputStream(new FileOutputStream(tempWarFile, false));
|
||||
IOUtils.copy(inStream, outStream);
|
||||
} catch (IOException e) {
|
||||
|
|
@ -64,12 +79,37 @@ public class RunServerCommand extends BaseCommand {
|
|||
return;
|
||||
}
|
||||
|
||||
ourLog.info("Starting HAPI FHIR JPA server");
|
||||
final ContextLoaderListener cll = new ContextLoaderListener();
|
||||
|
||||
ourLog.info("Starting HAPI FHIR JPA server in {} mode", ContextHolder.getCtx().getVersion().getVersion());
|
||||
WebAppContext root = new WebAppContext();
|
||||
root.setAllowDuplicateFragmentNames(true);
|
||||
root.setWar(tempWarFile.getAbsolutePath());
|
||||
root.setParentLoaderPriority(true);
|
||||
root.setContextPath("/");
|
||||
root.addEventListener(new ServletContextListener() {
|
||||
@Override
|
||||
public void contextInitialized(ServletContextEvent theSce) {
|
||||
theSce.getServletContext().setInitParameter(ContextLoader.CONTEXT_CLASS_PARAM, AnnotationConfigWebApplicationContext.class.getName());
|
||||
switch (ContextHolder.getCtx().getVersion().getVersion()) {
|
||||
case DSTU2:
|
||||
theSce.getServletContext().setInitParameter(ContextLoader.CONFIG_LOCATION_PARAM, FhirServerConfig.class.getName());
|
||||
break;
|
||||
case DSTU2_1:
|
||||
theSce.getServletContext().setInitParameter(ContextLoader.CONFIG_LOCATION_PARAM, FhirServerConfigDstu21.class.getName());
|
||||
break;
|
||||
}
|
||||
cll.contextInitialized(theSce);
|
||||
}
|
||||
|
||||
@Override
|
||||
public void contextDestroyed(ServletContextEvent theSce) {
|
||||
cll.contextDestroyed(theSce);
|
||||
}
|
||||
});
|
||||
|
||||
String path = ContextHolder.getPath();
|
||||
root.addServlet("ca.uhn.fhir.jpa.demo.JpaServerDemo", path + "*");
|
||||
|
||||
myServer = new Server(myPort);
|
||||
myServer.setHandler(root);
|
||||
|
|
@ -82,7 +122,7 @@ public class RunServerCommand extends BaseCommand {
|
|||
|
||||
ourLog.info("Server started on port {}", myPort);
|
||||
ourLog.info("Web Testing UI : http://localhost:{}/", myPort);
|
||||
ourLog.info("Server Base URL: http://localhost:{}/baseDstu2/", myPort);
|
||||
ourLog.info("Server Base URL: http://localhost:{}{}", myPort, path);
|
||||
|
||||
|
||||
}
|
||||
|
|
@ -24,6 +24,7 @@ import org.hl7.fhir.dstu21.hapi.validation.DefaultProfileValidationSupport;
|
|||
import org.hl7.fhir.dstu21.hapi.validation.FhirInstanceValidator;
|
||||
import org.hl7.fhir.dstu21.hapi.validation.ValidationSupportChain;
|
||||
import org.hl7.fhir.dstu21.model.StructureDefinition;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
|
||||
import com.phloc.commons.io.file.FileUtils;
|
||||
|
||||
|
|
@ -51,6 +52,7 @@ public class ValidateCommand extends BaseCommand {
|
|||
@Override
|
||||
public Options getOptions() {
|
||||
Options retVal = new Options();
|
||||
addFhirVersionOption(retVal);
|
||||
|
||||
OptionGroup source = new OptionGroup();
|
||||
source.addOption(new Option("f", "file", true, "The name of the file to validate"));
|
||||
|
|
@ -60,7 +62,8 @@ public class ValidateCommand extends BaseCommand {
|
|||
retVal.addOption("x", "xsd", false, "Validate using Schemas");
|
||||
retVal.addOption("s", "sch", false, "Validate using Schematrons");
|
||||
retVal.addOption("p", "profile", false, "Validate using Profiles (StructureDefinition / ValueSet)");
|
||||
retVal.addOption("r", "fetch-remote", false, "Allow fetching remote resources (in other words, if a resource being validated refers to an external StructureDefinition, Questionnaire, etc. this flag allows the validator to access the internet to try and fetch this resource)");
|
||||
retVal.addOption("r", "fetch-remote", false,
|
||||
"Allow fetching remote resources (in other words, if a resource being validated refers to an external StructureDefinition, Questionnaire, etc. this flag allows the validator to access the internet to try and fetch this resource)");
|
||||
retVal.addOption(new Option("l", "fetch-local", true, "Fetch a profile locally and use it if referenced"));
|
||||
retVal.addOption("e", "encoding", false, "File encoding (default is UTF-8)");
|
||||
|
||||
|
|
@ -91,28 +94,55 @@ public class ValidateCommand extends BaseCommand {
|
|||
throw new ParseException("Could not detect encoding (json/xml) of contents");
|
||||
}
|
||||
|
||||
FhirValidator val = getFhirCtx().newValidator();
|
||||
FhirContext ctx = getSpecVersionContext(theCommandLine);
|
||||
FhirValidator val = ctx.newValidator();
|
||||
|
||||
IBaseResource localProfileResource = null;
|
||||
if (theCommandLine.hasOption("l")) {
|
||||
String localProfile = theCommandLine.getOptionValue("l");
|
||||
ourLog.info("Loading profile: {}", localProfile);
|
||||
String input;
|
||||
try {
|
||||
input = IOUtils.toString(new FileReader(new File(localProfile)));
|
||||
} catch (IOException e) {
|
||||
throw new ParseException("Failed to load file '" + localProfile + "' - Error: " + e.toString());
|
||||
}
|
||||
|
||||
localProfileResource = MethodUtil.detectEncodingNoDefault(input).newParser(ctx).parseResource(input);
|
||||
}
|
||||
|
||||
if (theCommandLine.hasOption("p")) {
|
||||
FhirInstanceValidator instanceValidator = new FhirInstanceValidator();
|
||||
val.registerValidatorModule(instanceValidator);
|
||||
ValidationSupportChain validationSupport = new ValidationSupportChain(new DefaultProfileValidationSupport());
|
||||
if (theCommandLine.hasOption("l")) {
|
||||
String localProfile = theCommandLine.getOptionValue("l");
|
||||
ourLog.info("Loading profile: {}", localProfile);
|
||||
String input;
|
||||
try {
|
||||
input = IOUtils.toString(new FileReader(new File(localProfile)));
|
||||
} catch (IOException e) {
|
||||
throw new ParseException("Failed to load file '" + localProfile + "' - Error: " + e.toString());
|
||||
switch (ctx.getVersion().getVersion()) {
|
||||
case DSTU2: {
|
||||
org.hl7.fhir.instance.hapi.validation.FhirInstanceValidator instanceValidator = new org.hl7.fhir.instance.hapi.validation.FhirInstanceValidator();
|
||||
val.registerValidatorModule(instanceValidator);
|
||||
org.hl7.fhir.instance.hapi.validation.ValidationSupportChain validationSupport = new org.hl7.fhir.instance.hapi.validation.ValidationSupportChain(
|
||||
new org.hl7.fhir.instance.hapi.validation.DefaultProfileValidationSupport());
|
||||
if (localProfileResource != null) {
|
||||
instanceValidator.setStructureDefintion((org.hl7.fhir.instance.model.StructureDefinition) localProfileResource);
|
||||
}
|
||||
|
||||
StructureDefinition sd = (StructureDefinition) MethodUtil.detectEncodingNoDefault(input).newParser(getFhirCtx()).parseResource(input);
|
||||
instanceValidator.setStructureDefintion(sd);
|
||||
if (theCommandLine.hasOption("r")) {
|
||||
validationSupport.addValidationSupport(new LoadingValidationSupportDstu2());
|
||||
}
|
||||
instanceValidator.setValidationSupport(validationSupport);
|
||||
break;
|
||||
}
|
||||
if (theCommandLine.hasOption("r")) {
|
||||
validationSupport.addValidationSupport(new LoadingValidationSupport());
|
||||
case DSTU2_1: {
|
||||
FhirInstanceValidator instanceValidator = new FhirInstanceValidator();
|
||||
val.registerValidatorModule(instanceValidator);
|
||||
ValidationSupportChain validationSupport = new ValidationSupportChain(new DefaultProfileValidationSupport());
|
||||
if (localProfileResource != null) {
|
||||
instanceValidator.setStructureDefintion((StructureDefinition) localProfileResource);
|
||||
}
|
||||
if (theCommandLine.hasOption("r")) {
|
||||
validationSupport.addValidationSupport(new LoadingValidationSupportDstu21());
|
||||
}
|
||||
instanceValidator.setValidationSupport(validationSupport);
|
||||
break;
|
||||
}
|
||||
default:
|
||||
throw new ParseException("Profile validation (-p) is not supported for this FHIR version");
|
||||
}
|
||||
instanceValidator.setValidationSupport(validationSupport);
|
||||
}
|
||||
|
||||
val.setValidateAgainstStandardSchema(theCommandLine.hasOption("x"));
|
||||
|
|
@ -125,7 +155,7 @@ public class ValidateCommand extends BaseCommand {
|
|||
for (SingleValidationMessage next : results.getMessages()) {
|
||||
count++;
|
||||
b.append(App.LINESEP);
|
||||
String leftString = "Issue "+count+": ";
|
||||
String leftString = "Issue " + count + ": ";
|
||||
int leftWidth = leftString.length();
|
||||
b.append(ansi().fg(Color.GREEN)).append(leftString);
|
||||
if (next.getSeverity() != null) {
|
||||
|
|
@ -0,0 +1,130 @@
|
|||
/target
|
||||
/jpaserver_derby_files
|
||||
*.log
|
||||
ca.uhn.fhir.jpa.entity.ResourceTable/
|
||||
|
||||
# Created by https://www.gitignore.io
|
||||
|
||||
### Java ###
|
||||
*.class
|
||||
|
||||
# Mobile Tools for Java (J2ME)
|
||||
.mtj.tmp/
|
||||
|
||||
# Package Files #
|
||||
*.jar
|
||||
*.war
|
||||
*.ear
|
||||
|
||||
# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml
|
||||
hs_err_pid*
|
||||
|
||||
|
||||
### Maven ###
|
||||
target/
|
||||
pom.xml.tag
|
||||
pom.xml.releaseBackup
|
||||
pom.xml.versionsBackup
|
||||
pom.xml.next
|
||||
release.properties
|
||||
dependency-reduced-pom.xml
|
||||
buildNumber.properties
|
||||
|
||||
|
||||
### Vim ###
|
||||
[._]*.s[a-w][a-z]
|
||||
[._]s[a-w][a-z]
|
||||
*.un~
|
||||
Session.vim
|
||||
.netrwhist
|
||||
*~
|
||||
|
||||
|
||||
### Intellij ###
|
||||
# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm
|
||||
|
||||
*.iml
|
||||
|
||||
## Directory-based project format:
|
||||
.idea/
|
||||
# if you remove the above rule, at least ignore the following:
|
||||
|
||||
# User-specific stuff:
|
||||
# .idea/workspace.xml
|
||||
# .idea/tasks.xml
|
||||
# .idea/dictionaries
|
||||
|
||||
# Sensitive or high-churn files:
|
||||
# .idea/dataSources.ids
|
||||
# .idea/dataSources.xml
|
||||
# .idea/sqlDataSources.xml
|
||||
# .idea/dynamic.xml
|
||||
# .idea/uiDesigner.xml
|
||||
|
||||
# Gradle:
|
||||
# .idea/gradle.xml
|
||||
# .idea/libraries
|
||||
|
||||
# Mongo Explorer plugin:
|
||||
# .idea/mongoSettings.xml
|
||||
|
||||
## File-based project format:
|
||||
*.ipr
|
||||
*.iws
|
||||
|
||||
## Plugin-specific files:
|
||||
|
||||
# IntelliJ
|
||||
/out/
|
||||
|
||||
# mpeltonen/sbt-idea plugin
|
||||
.idea_modules/
|
||||
|
||||
# JIRA plugin
|
||||
atlassian-ide-plugin.xml
|
||||
|
||||
# Crashlytics plugin (for Android Studio and IntelliJ)
|
||||
com_crashlytics_export_strings.xml
|
||||
crashlytics.properties
|
||||
crashlytics-build.properties
|
||||
|
||||
|
||||
|
||||
### Eclipse ###
|
||||
*.pydevproject
|
||||
.metadata
|
||||
.gradle
|
||||
bin/
|
||||
tmp/
|
||||
*.tmp
|
||||
*.bak
|
||||
*.swp
|
||||
*~.nib
|
||||
local.properties
|
||||
.settings/
|
||||
.loadpath
|
||||
|
||||
# Eclipse Core
|
||||
.project
|
||||
|
||||
# External tool builders
|
||||
.externalToolBuilders/
|
||||
|
||||
# Locally stored "Eclipse launch configurations"
|
||||
*.launch
|
||||
|
||||
# CDT-specific
|
||||
.cproject
|
||||
|
||||
# JDT-specific (Eclipse Java Development Tools)
|
||||
.classpath
|
||||
|
||||
# PDT-specific
|
||||
.buildpath
|
||||
|
||||
# sbteclipse plugin
|
||||
.target
|
||||
|
||||
# TeXlipse plugin
|
||||
.texlipse
|
||||
|
||||
|
|
@ -0,0 +1,245 @@
|
|||
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
|
||||
<!-- Note: HAPI projects use the "hapi-fhir" POM as their base to provide easy management. You do not need to use this in your own projects, so the "parent" tag and it's contents below may be removed
|
||||
if you are using this file as a basis for your own project. -->
|
||||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-cli</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
||||
<artifactId>hapi-fhir-cli-jpaserver</artifactId>
|
||||
<packaging>war</packaging>
|
||||
|
||||
<name>HAPI FHIR - Command Line Client - Server WAR</name>
|
||||
|
||||
<dependencies>
|
||||
|
||||
<!-- This dependency includes the core HAPI-FHIR classes -->
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-base</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
<scope>provided</scope>
|
||||
</dependency>
|
||||
|
||||
<!-- At least one "structures" JAR must also be included -->
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-structures-dstu</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-structures-dstu2</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
</dependency>
|
||||
|
||||
<!-- This dependency includes the JPA server itself, which is packaged separately from the rest of HAPI FHIR -->
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-jpaserver-base</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
</dependency>
|
||||
|
||||
<!-- This dependency is used for the "FHIR Tester" web app overlay -->
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-testpage-overlay</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
<type>war</type>
|
||||
<scope>provided</scope>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-testpage-overlay</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
<classifier>classes</classifier>
|
||||
<scope>provided</scope>
|
||||
</dependency>
|
||||
|
||||
<!-- HAPI-FHIR uses Logback for logging support. The logback library is included automatically by Maven as a part of the hapi-fhir-base dependency, but you also need to include a logging library. Logback
|
||||
is used here, but log4j would also be fine. -->
|
||||
<dependency>
|
||||
<groupId>ch.qos.logback</groupId>
|
||||
<artifactId>logback-classic</artifactId>
|
||||
<scope>provided</scope>
|
||||
</dependency>
|
||||
|
||||
<!-- Needed for JEE/Servlet support -->
|
||||
<dependency>
|
||||
<groupId>javax.servlet</groupId>
|
||||
<artifactId>javax.servlet-api</artifactId>
|
||||
<scope>provided</scope>
|
||||
</dependency>
|
||||
|
||||
<!-- If you are using HAPI narrative generation, you will need to include Thymeleaf as well. Otherwise the following can be omitted. -->
|
||||
<dependency>
|
||||
<groupId>org.thymeleaf</groupId>
|
||||
<artifactId>thymeleaf</artifactId>
|
||||
<scope>provided</scope>
|
||||
</dependency>
|
||||
|
||||
<!-- Used for CORS support -->
|
||||
<dependency>
|
||||
<groupId>org.ebaysf.web</groupId>
|
||||
<artifactId>cors-filter</artifactId>
|
||||
<exclusions>
|
||||
<exclusion>
|
||||
<artifactId>servlet-api</artifactId>
|
||||
<groupId>javax.servlet</groupId>
|
||||
</exclusion>
|
||||
</exclusions>
|
||||
</dependency>
|
||||
|
||||
<!-- Spring Web is used to deploy the server to a web container. -->
|
||||
<dependency>
|
||||
<groupId>org.springframework</groupId>
|
||||
<artifactId>spring-web</artifactId>
|
||||
<scope>provided</scope>
|
||||
</dependency>
|
||||
|
||||
<!-- You may not need this if you are deploying to an application server which provides database connection pools itself. -->
|
||||
<dependency>
|
||||
<groupId>org.apache.commons</groupId>
|
||||
<artifactId>commons-dbcp2</artifactId>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>commons-cli</groupId>
|
||||
<artifactId>commons-cli</artifactId>
|
||||
</dependency>
|
||||
|
||||
<!-- This example uses Derby embedded database. If you are using another database such as Mysql or Oracle, you may omit the following dependencies and replace them with an appropriate database client
|
||||
dependency for your database platform. -->
|
||||
<dependency>
|
||||
<groupId>org.apache.derby</groupId>
|
||||
<artifactId>derby</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.derby</groupId>
|
||||
<artifactId>derbynet</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.derby</groupId>
|
||||
<artifactId>derbyclient</artifactId>
|
||||
</dependency>
|
||||
|
||||
<!-- The following dependencies are only needed for automated unit tests, you do not neccesarily need them to run the example. -->
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-servlets</artifactId>
|
||||
<scope>test</scope>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-servlet</artifactId>
|
||||
<scope>test</scope>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-server</artifactId>
|
||||
<scope>test</scope>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-util</artifactId>
|
||||
<scope>test</scope>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-webapp</artifactId>
|
||||
<scope>test</scope>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>com.phloc</groupId>
|
||||
<artifactId>phloc-schematron</artifactId>
|
||||
</dependency>
|
||||
|
||||
</dependencies>
|
||||
|
||||
<build>
|
||||
|
||||
<!-- Tells Maven to name the generated WAR file as hapi-fhir-jpaserver-example.war -->
|
||||
<finalName>hapi-fhir-cli-jpaserver</finalName>
|
||||
|
||||
<!-- The following is not required for the application to build, but allows you to test it by issuing "mvn jetty:run" from the command line. -->
|
||||
<pluginManagement>
|
||||
<plugins>
|
||||
<plugin>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-maven-plugin</artifactId>
|
||||
<configuration>
|
||||
<webApp>
|
||||
<contextPath>/hapi-fhir-jpaserver-example</contextPath>
|
||||
<allowDuplicateFragmentNames>true</allowDuplicateFragmentNames>
|
||||
</webApp>
|
||||
</configuration>
|
||||
</plugin>
|
||||
</plugins>
|
||||
</pluginManagement>
|
||||
|
||||
<plugins>
|
||||
<!-- Tell Maven which Java source version you want to use -->
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-compiler-plugin</artifactId>
|
||||
<configuration>
|
||||
<source>1.6</source>
|
||||
<target>1.6</target>
|
||||
</configuration>
|
||||
</plugin>
|
||||
|
||||
<!-- The configuration here tells the WAR plugin to include the FHIR Tester overlay. You can omit it if you are not using that feature. -->
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-war-plugin</artifactId>
|
||||
<configuration>
|
||||
<archive>
|
||||
<manifestEntries>
|
||||
<Build-Time>${maven.build.timestamp}</Build-Time>
|
||||
</manifestEntries>
|
||||
</archive>
|
||||
<overlays>
|
||||
<overlay>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-testpage-overlay</artifactId>
|
||||
</overlay>
|
||||
</overlays>
|
||||
<webXml>src/main/webapp/WEB-INF/web.xml</webXml>
|
||||
<attachClasses>true</attachClasses>
|
||||
</configuration>
|
||||
</plugin>
|
||||
|
||||
<!-- This plugin is just a part of the HAPI internal build process, you do not need to incude it in your own projects -->
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-deploy-plugin</artifactId>
|
||||
<configuration>
|
||||
<skip>true</skip>
|
||||
</configuration>
|
||||
</plugin>
|
||||
|
||||
<!-- This is to run the integration tests -->
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-failsafe-plugin</artifactId>
|
||||
<configuration>
|
||||
<redirectTestOutputToFile>true</redirectTestOutputToFile>
|
||||
</configuration>
|
||||
<executions>
|
||||
<execution>
|
||||
<goals>
|
||||
<goal>integration-test</goal>
|
||||
<goal>verify</goal>
|
||||
</goals>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
|
||||
</plugins>
|
||||
</build>
|
||||
|
||||
</project>
|
||||
|
|
@ -0,0 +1,31 @@
|
|||
Running hapi-fhir-jpaserver-example in Tomcat from IntelliJ
|
||||
|
||||
Install Tomcat.
|
||||
|
||||
Make sure you have Tomcat set up in IntelliJ.
|
||||
File->Settings->Build, Execution, Deployment->Application Servers
|
||||
Click +
|
||||
Select "Tomcat Server"
|
||||
Enter the path to your tomcat deployment for both Tomcat Home (IntelliJ will fill in base directory for you)
|
||||
|
||||
Add a Run Configuration for running hapi-fhir-jpaserver-example under Tomcat
|
||||
Run->Edit Configurations
|
||||
Click the green +
|
||||
Select Tomcat Server, Local
|
||||
Change the name to whatever you wish
|
||||
Uncheck the "After launch" checkbox
|
||||
On the "Deployment" tab, click the green +
|
||||
Select "Artifact"
|
||||
Select "hapi-fhir-jpaserver-example:war"
|
||||
In "Application context" type /hapi
|
||||
|
||||
Run the configuration
|
||||
You should now have an "Application Servers" in the list of windows at the bottom.
|
||||
Click it.
|
||||
Select your server, and click the green triangle (or the bug if you want to debug)
|
||||
Wait for the console output to stop
|
||||
|
||||
Point your browser (or fiddler, or what have you) to
|
||||
http://localhost:8080/hapi/base/Patient
|
||||
|
||||
You should get an empty bundle back.
|
||||
|
|
@ -0,0 +1,38 @@
|
|||
package ca.uhn.fhir.jpa.demo;
|
||||
|
||||
import org.apache.commons.cli.ParseException;
|
||||
import org.apache.commons.lang3.Validate;
|
||||
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
|
||||
public class ContextHolder {
|
||||
|
||||
private static FhirContext ourCtx;
|
||||
private static String ourPath;
|
||||
|
||||
public static FhirContext getCtx() {
|
||||
Validate.notNull(ourPath, "Context not set");
|
||||
return ourCtx;
|
||||
}
|
||||
|
||||
public static void setCtx(FhirContext theCtx) throws ParseException {
|
||||
switch (theCtx.getVersion().getVersion()) {
|
||||
case DSTU2:
|
||||
ourPath = "/baseDstu2/";
|
||||
break;
|
||||
case DSTU2_1:
|
||||
ourPath = "/baseDstu2.1/";
|
||||
break;
|
||||
default:
|
||||
throw new ParseException("FHIR version not supported by this command: " + ContextHolder.getCtx().getVersion().getVersion());
|
||||
}
|
||||
|
||||
ourCtx = theCtx;
|
||||
}
|
||||
|
||||
public static String getPath() {
|
||||
Validate.notNull(ourPath, "Context not set");
|
||||
return ourPath;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,121 @@
|
|||
package ca.uhn.fhir.jpa.demo;
|
||||
|
||||
import java.util.Properties;
|
||||
|
||||
import javax.persistence.EntityManagerFactory;
|
||||
import javax.sql.DataSource;
|
||||
|
||||
import org.apache.commons.dbcp2.BasicDataSource;
|
||||
import org.apache.commons.lang3.time.DateUtils;
|
||||
import org.hibernate.jpa.HibernatePersistenceProvider;
|
||||
import org.springframework.beans.factory.annotation.Autowire;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.orm.jpa.JpaTransactionManager;
|
||||
import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
|
||||
import org.springframework.transaction.annotation.EnableTransactionManagement;
|
||||
|
||||
import ca.uhn.fhir.jpa.config.BaseJavaConfigDstu2;
|
||||
import ca.uhn.fhir.jpa.dao.DaoConfig;
|
||||
import ca.uhn.fhir.jpa.util.SubscriptionsRequireManualActivationInterceptorDstu2;
|
||||
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
|
||||
import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
|
||||
import ca.uhn.fhir.rest.server.interceptor.ResponseHighlighterInterceptor;
|
||||
|
||||
@Configuration
|
||||
@EnableTransactionManagement()
|
||||
public class FhirServerConfig extends BaseJavaConfigDstu2 {
|
||||
|
||||
/**
|
||||
* Configure FHIR properties around the the JPA server via this bean
|
||||
*/
|
||||
@Bean()
|
||||
public DaoConfig daoConfig() {
|
||||
DaoConfig retVal = new DaoConfig();
|
||||
retVal.setSubscriptionEnabled(true);
|
||||
retVal.setSubscriptionPollDelay(5000);
|
||||
retVal.setSubscriptionPurgeInactiveAfterMillis(DateUtils.MILLIS_PER_HOUR);
|
||||
retVal.setAllowMultipleDelete(true);
|
||||
return retVal;
|
||||
}
|
||||
|
||||
/**
|
||||
* The following bean configures the database connection. The 'url' property value of "jdbc:derby:directory:jpaserver_derby_files;create=true" indicates that the server should save resources in a
|
||||
* directory called "jpaserver_derby_files".
|
||||
*
|
||||
* A URL to a remote database could also be placed here, along with login credentials and other properties supported by BasicDataSource.
|
||||
*/
|
||||
@Bean(destroyMethod = "close")
|
||||
public DataSource dataSource() {
|
||||
BasicDataSource retVal = new BasicDataSource();
|
||||
retVal.setDriver(new org.apache.derby.jdbc.EmbeddedDriver());
|
||||
retVal.setUrl("jdbc:derby:directory:target/jpaserver_derby_files;create=true");
|
||||
retVal.setUsername("");
|
||||
retVal.setPassword("");
|
||||
return retVal;
|
||||
}
|
||||
|
||||
@Bean()
|
||||
public LocalContainerEntityManagerFactoryBean entityManagerFactory() {
|
||||
LocalContainerEntityManagerFactoryBean retVal = new LocalContainerEntityManagerFactoryBean();
|
||||
retVal.setPersistenceUnitName("HAPI_PU");
|
||||
retVal.setDataSource(dataSource());
|
||||
retVal.setPackagesToScan("ca.uhn.fhir.jpa.entity");
|
||||
retVal.setPersistenceProvider(new HibernatePersistenceProvider());
|
||||
retVal.setJpaProperties(jpaProperties());
|
||||
return retVal;
|
||||
}
|
||||
|
||||
private Properties jpaProperties() {
|
||||
Properties extraProperties = new Properties();
|
||||
extraProperties.put("hibernate.dialect", org.hibernate.dialect.DerbyTenSevenDialect.class.getName());
|
||||
extraProperties.put("hibernate.format_sql", "true");
|
||||
extraProperties.put("hibernate.show_sql", "false");
|
||||
extraProperties.put("hibernate.hbm2ddl.auto", "update");
|
||||
extraProperties.put("hibernate.jdbc.batch_size", "20");
|
||||
extraProperties.put("hibernate.cache.use_query_cache", "false");
|
||||
extraProperties.put("hibernate.cache.use_second_level_cache", "false");
|
||||
extraProperties.put("hibernate.cache.use_structured_entries", "false");
|
||||
extraProperties.put("hibernate.cache.use_minimal_puts", "false");
|
||||
extraProperties.put("hibernate.search.default.directory_provider", "filesystem");
|
||||
extraProperties.put("hibernate.search.default.indexBase", "target/lucenefiles");
|
||||
extraProperties.put("hibernate.search.lucene_version", "LUCENE_CURRENT");
|
||||
return extraProperties;
|
||||
}
|
||||
|
||||
/**
|
||||
* Do some fancy logging to create a nice access log that has details about each incoming request.
|
||||
*/
|
||||
public IServerInterceptor loggingInterceptor() {
|
||||
LoggingInterceptor retVal = new LoggingInterceptor();
|
||||
retVal.setLoggerName("fhirtest.access");
|
||||
retVal.setMessageFormat(
|
||||
"Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] Operation[${operationType} ${operationName} ${idOrResourceName}] UA[${requestHeader.user-agent}] Params[${requestParameters}] ResponseEncoding[${responseEncodingNoDefault}]");
|
||||
retVal.setLogExceptions(true);
|
||||
retVal.setErrorMessageFormat("ERROR - ${requestVerb} ${requestUrl}");
|
||||
return retVal;
|
||||
}
|
||||
|
||||
/**
|
||||
* This interceptor adds some pretty syntax highlighting in responses when a browser is detected
|
||||
*/
|
||||
@Bean(autowire = Autowire.BY_TYPE)
|
||||
public IServerInterceptor responseHighlighterInterceptor() {
|
||||
ResponseHighlighterInterceptor retVal = new ResponseHighlighterInterceptor();
|
||||
return retVal;
|
||||
}
|
||||
|
||||
@Bean(autowire = Autowire.BY_TYPE)
|
||||
public IServerInterceptor subscriptionSecurityInterceptor() {
|
||||
SubscriptionsRequireManualActivationInterceptorDstu2 retVal = new SubscriptionsRequireManualActivationInterceptorDstu2();
|
||||
return retVal;
|
||||
}
|
||||
|
||||
@Bean()
|
||||
public JpaTransactionManager transactionManager(EntityManagerFactory entityManagerFactory) {
|
||||
JpaTransactionManager retVal = new JpaTransactionManager();
|
||||
retVal.setEntityManagerFactory(entityManagerFactory);
|
||||
return retVal;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,129 @@
|
|||
package ca.uhn.fhir.jpa.demo;
|
||||
|
||||
import java.util.Properties;
|
||||
|
||||
import javax.persistence.EntityManagerFactory;
|
||||
import javax.sql.DataSource;
|
||||
|
||||
import org.apache.commons.dbcp2.BasicDataSource;
|
||||
import org.apache.commons.lang3.time.DateUtils;
|
||||
import org.hibernate.jpa.HibernatePersistenceProvider;
|
||||
import org.springframework.beans.factory.annotation.Autowire;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.orm.jpa.JpaTransactionManager;
|
||||
import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
|
||||
import org.springframework.transaction.annotation.EnableTransactionManagement;
|
||||
|
||||
import ca.uhn.fhir.jpa.config.BaseJavaConfigDstu21;
|
||||
import ca.uhn.fhir.jpa.dao.DaoConfig;
|
||||
import ca.uhn.fhir.jpa.util.SubscriptionsRequireManualActivationInterceptorDstu21;
|
||||
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
|
||||
import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
|
||||
import ca.uhn.fhir.rest.server.interceptor.ResponseHighlighterInterceptor;
|
||||
|
||||
/**
|
||||
* This class isn't used by default by the example, but
|
||||
* you can use it as a config if you want to support DSTU2.1
|
||||
* instead of DSTU2 in your server.
|
||||
*
|
||||
* See https://github.com/jamesagnew/hapi-fhir/issues/278
|
||||
*/
|
||||
@Configuration
|
||||
@EnableTransactionManagement()
|
||||
public class FhirServerConfigDstu21 extends BaseJavaConfigDstu21 {
|
||||
|
||||
/**
|
||||
* Configure FHIR properties around the the JPA server via this bean
|
||||
*/
|
||||
@Bean()
|
||||
public DaoConfig daoConfig() {
|
||||
DaoConfig retVal = new DaoConfig();
|
||||
retVal.setSubscriptionEnabled(true);
|
||||
retVal.setSubscriptionPollDelay(5000);
|
||||
retVal.setSubscriptionPurgeInactiveAfterMillis(DateUtils.MILLIS_PER_HOUR);
|
||||
retVal.setAllowMultipleDelete(true);
|
||||
return retVal;
|
||||
}
|
||||
|
||||
/**
|
||||
* The following bean configures the database connection. The 'url' property value of "jdbc:derby:directory:jpaserver_derby_files;create=true" indicates that the server should save resources in a
|
||||
* directory called "jpaserver_derby_files".
|
||||
*
|
||||
* A URL to a remote database could also be placed here, along with login credentials and other properties supported by BasicDataSource.
|
||||
*/
|
||||
@Bean(destroyMethod = "close")
|
||||
public DataSource dataSource() {
|
||||
BasicDataSource retVal = new BasicDataSource();
|
||||
retVal.setDriver(new org.apache.derby.jdbc.EmbeddedDriver());
|
||||
retVal.setUrl("jdbc:derby:directory:target/jpaserver_derby_files;create=true");
|
||||
retVal.setUsername("");
|
||||
retVal.setPassword("");
|
||||
return retVal;
|
||||
}
|
||||
|
||||
@Bean()
|
||||
public LocalContainerEntityManagerFactoryBean entityManagerFactory() {
|
||||
LocalContainerEntityManagerFactoryBean retVal = new LocalContainerEntityManagerFactoryBean();
|
||||
retVal.setPersistenceUnitName("HAPI_PU");
|
||||
retVal.setDataSource(dataSource());
|
||||
retVal.setPackagesToScan("ca.uhn.fhir.jpa.entity");
|
||||
retVal.setPersistenceProvider(new HibernatePersistenceProvider());
|
||||
retVal.setJpaProperties(jpaProperties());
|
||||
return retVal;
|
||||
}
|
||||
|
||||
private Properties jpaProperties() {
|
||||
Properties extraProperties = new Properties();
|
||||
extraProperties.put("hibernate.dialect", org.hibernate.dialect.DerbyTenSevenDialect.class.getName());
|
||||
extraProperties.put("hibernate.format_sql", "true");
|
||||
extraProperties.put("hibernate.show_sql", "false");
|
||||
extraProperties.put("hibernate.hbm2ddl.auto", "update");
|
||||
extraProperties.put("hibernate.jdbc.batch_size", "20");
|
||||
extraProperties.put("hibernate.cache.use_query_cache", "false");
|
||||
extraProperties.put("hibernate.cache.use_second_level_cache", "false");
|
||||
extraProperties.put("hibernate.cache.use_structured_entries", "false");
|
||||
extraProperties.put("hibernate.cache.use_minimal_puts", "false");
|
||||
extraProperties.put("hibernate.search.default.directory_provider", "filesystem");
|
||||
extraProperties.put("hibernate.search.default.indexBase", "target/lucenefiles");
|
||||
extraProperties.put("hibernate.search.lucene_version", "LUCENE_CURRENT");
|
||||
// extraProperties.put("hibernate.search.default.worker.execution", "async");
|
||||
return extraProperties;
|
||||
}
|
||||
|
||||
/**
|
||||
* Do some fancy logging to create a nice access log that has details about each incoming request.
|
||||
*/
|
||||
public IServerInterceptor loggingInterceptor() {
|
||||
LoggingInterceptor retVal = new LoggingInterceptor();
|
||||
retVal.setLoggerName("fhirtest.access");
|
||||
retVal.setMessageFormat(
|
||||
"Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] Operation[${operationType} ${operationName} ${idOrResourceName}] UA[${requestHeader.user-agent}] Params[${requestParameters}] ResponseEncoding[${responseEncodingNoDefault}]");
|
||||
retVal.setLogExceptions(true);
|
||||
retVal.setErrorMessageFormat("ERROR - ${requestVerb} ${requestUrl}");
|
||||
return retVal;
|
||||
}
|
||||
|
||||
/**
|
||||
* This interceptor adds some pretty syntax highlighting in responses when a browser is detected
|
||||
*/
|
||||
@Bean(autowire = Autowire.BY_TYPE)
|
||||
public IServerInterceptor responseHighlighterInterceptor() {
|
||||
ResponseHighlighterInterceptor retVal = new ResponseHighlighterInterceptor();
|
||||
return retVal;
|
||||
}
|
||||
|
||||
@Bean(autowire = Autowire.BY_TYPE)
|
||||
public IServerInterceptor subscriptionSecurityInterceptor() {
|
||||
SubscriptionsRequireManualActivationInterceptorDstu21 retVal = new SubscriptionsRequireManualActivationInterceptorDstu21();
|
||||
return retVal;
|
||||
}
|
||||
|
||||
@Bean()
|
||||
public JpaTransactionManager transactionManager(EntityManagerFactory entityManagerFactory) {
|
||||
JpaTransactionManager retVal = new JpaTransactionManager();
|
||||
retVal.setEntityManagerFactory(entityManagerFactory);
|
||||
return retVal;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,58 @@
|
|||
package ca.uhn.fhir.jpa.demo;
|
||||
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.context.annotation.Import;
|
||||
|
||||
import ca.uhn.fhir.context.FhirVersionEnum;
|
||||
import ca.uhn.fhir.to.FhirTesterMvcConfig;
|
||||
import ca.uhn.fhir.to.TesterConfig;
|
||||
|
||||
//@formatter:off
|
||||
/**
|
||||
* This spring config file configures the web testing module. It serves two
|
||||
* purposes:
|
||||
* 1. It imports FhirTesterMvcConfig, which is the spring config for the
|
||||
* tester itself
|
||||
* 2. It tells the tester which server(s) to talk to, via the testerConfig()
|
||||
* method below
|
||||
*/
|
||||
@Configuration
|
||||
@Import(FhirTesterMvcConfig.class)
|
||||
public class FhirTesterConfig {
|
||||
|
||||
/**
|
||||
* This bean tells the testing webpage which servers it should configure itself
|
||||
* to communicate with. In this example we configure it to talk to the local
|
||||
* server, as well as one public server. If you are creating a project to
|
||||
* deploy somewhere else, you might choose to only put your own server's
|
||||
* address here.
|
||||
*
|
||||
* Note the use of the ${serverBase} variable below. This will be replaced with
|
||||
* the base URL as reported by the server itself. Often for a simple Tomcat
|
||||
* (or other container) installation, this will end up being something
|
||||
* like "http://localhost:8080/hapi-fhir-jpaserver-example". If you are
|
||||
* deploying your server to a place with a fully qualified domain name,
|
||||
* you might want to use that instead of using the variable.
|
||||
*/
|
||||
@Bean
|
||||
public TesterConfig testerConfig() {
|
||||
TesterConfig retVal = new TesterConfig();
|
||||
retVal
|
||||
.addServer()
|
||||
.withId("home")
|
||||
.withFhirVersion(ContextHolder.getCtx().getVersion().getVersion())
|
||||
.withBaseUrl("${serverBase}" + ContextHolder.getPath())
|
||||
.withName("Local Tester");
|
||||
|
||||
retVal
|
||||
.addServer()
|
||||
.withId("hapi")
|
||||
.withFhirVersion(FhirVersionEnum.DSTU2)
|
||||
.withBaseUrl("http://fhirtest.uhn.ca/baseDstu2")
|
||||
.withName("Public HAPI Test Server");
|
||||
return retVal;
|
||||
}
|
||||
|
||||
}
|
||||
//@formatter:on
|
||||
|
|
@ -0,0 +1,149 @@
|
|||
package ca.uhn.fhir.jpa.demo;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.List;
|
||||
|
||||
import javax.servlet.ServletException;
|
||||
|
||||
import org.hl7.fhir.dstu21.model.Meta;
|
||||
import org.springframework.web.context.ContextLoaderListener;
|
||||
import org.springframework.web.context.WebApplicationContext;
|
||||
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.context.FhirVersionEnum;
|
||||
import ca.uhn.fhir.jpa.dao.DaoConfig;
|
||||
import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
|
||||
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu1;
|
||||
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu2;
|
||||
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu21;
|
||||
import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu1;
|
||||
import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu2;
|
||||
import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu21;
|
||||
import ca.uhn.fhir.model.api.IResource;
|
||||
import ca.uhn.fhir.model.dstu2.composite.MetaDt;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Bundle;
|
||||
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;
|
||||
import ca.uhn.fhir.rest.server.ETagSupportEnum;
|
||||
import ca.uhn.fhir.rest.server.EncodingEnum;
|
||||
import ca.uhn.fhir.rest.server.FifoMemoryPagingProvider;
|
||||
import ca.uhn.fhir.rest.server.IResourceProvider;
|
||||
import ca.uhn.fhir.rest.server.RestfulServer;
|
||||
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
|
||||
|
||||
public class JpaServerDemo extends RestfulServer {
|
||||
|
||||
private static final long serialVersionUID = 1L;
|
||||
|
||||
private WebApplicationContext myAppCtx;
|
||||
|
||||
@SuppressWarnings("unchecked")
|
||||
@Override
|
||||
protected void initialize() throws ServletException {
|
||||
super.initialize();
|
||||
|
||||
setFhirContext(ContextHolder.getCtx());
|
||||
|
||||
// Get the spring context from the web container (it's declared in web.xml)
|
||||
myAppCtx = ContextLoaderListener.getCurrentWebApplicationContext();
|
||||
|
||||
/*
|
||||
* The hapi-fhir-server-resourceproviders-dev.xml file is a spring configuration
|
||||
* file which is automatically generated as a part of hapi-fhir-jpaserver-base and
|
||||
* contains bean definitions for a resource provider for each resource type
|
||||
*/
|
||||
String resourceProviderBeanName;
|
||||
FhirVersionEnum fhirVersion = ContextHolder.getCtx().getVersion().getVersion();
|
||||
switch (fhirVersion) {
|
||||
case DSTU1:
|
||||
resourceProviderBeanName = "myResourceProvidersDstu1";
|
||||
break;
|
||||
case DSTU2:
|
||||
resourceProviderBeanName = "myResourceProvidersDstu2";
|
||||
break;
|
||||
case DSTU2_1:
|
||||
resourceProviderBeanName = "myResourceProvidersDstu21";
|
||||
break;
|
||||
default:
|
||||
throw new IllegalStateException();
|
||||
}
|
||||
|
||||
List<IResourceProvider> beans = myAppCtx.getBean(resourceProviderBeanName, List.class);
|
||||
setResourceProviders(beans);
|
||||
|
||||
/*
|
||||
* The system provider implements non-resource-type methods, such as
|
||||
* transaction, and global history.
|
||||
*/
|
||||
Object systemProvider;
|
||||
if (fhirVersion == FhirVersionEnum.DSTU1) {
|
||||
systemProvider = myAppCtx.getBean("mySystemProviderDstu1", JpaSystemProviderDstu1.class);
|
||||
} else if (fhirVersion == FhirVersionEnum.DSTU2) {
|
||||
systemProvider = myAppCtx.getBean("mySystemProviderDstu2", JpaSystemProviderDstu2.class);
|
||||
} else if (fhirVersion == FhirVersionEnum.DSTU2_1) {
|
||||
systemProvider = myAppCtx.getBean("mySystemProviderDstu21", JpaSystemProviderDstu21.class);
|
||||
} else {
|
||||
throw new IllegalStateException();
|
||||
}
|
||||
setPlainProviders(systemProvider);
|
||||
|
||||
/*
|
||||
* The conformance provider exports the supported resources, search parameters, etc for
|
||||
* this server. The JPA version adds resource counts to the exported statement, so it
|
||||
* is a nice addition.
|
||||
*/
|
||||
if (fhirVersion == FhirVersionEnum.DSTU1) {
|
||||
IFhirSystemDao<List<IResource>, MetaDt> systemDao = myAppCtx.getBean("mySystemDaoDstu1",
|
||||
IFhirSystemDao.class);
|
||||
JpaConformanceProviderDstu1 confProvider = new JpaConformanceProviderDstu1(this, systemDao);
|
||||
confProvider.setImplementationDescription("Example Server");
|
||||
setServerConformanceProvider(confProvider);
|
||||
} else if (fhirVersion == FhirVersionEnum.DSTU2) {
|
||||
IFhirSystemDao<Bundle, MetaDt> systemDao = myAppCtx.getBean("mySystemDaoDstu2", IFhirSystemDao.class);
|
||||
JpaConformanceProviderDstu2 confProvider = new JpaConformanceProviderDstu2(this, systemDao,
|
||||
myAppCtx.getBean(DaoConfig.class));
|
||||
confProvider.setImplementationDescription("Example Server");
|
||||
setServerConformanceProvider(confProvider);
|
||||
} else if (fhirVersion == FhirVersionEnum.DSTU2_1) {
|
||||
IFhirSystemDao<org.hl7.fhir.dstu21.model.Bundle, Meta> systemDao = myAppCtx
|
||||
.getBean("mySystemDaoDstu21", IFhirSystemDao.class);
|
||||
JpaConformanceProviderDstu21 confProvider = new JpaConformanceProviderDstu21(this, systemDao,
|
||||
myAppCtx.getBean(DaoConfig.class));
|
||||
confProvider.setImplementationDescription("Example Server");
|
||||
setServerConformanceProvider(confProvider);
|
||||
} else {
|
||||
throw new IllegalStateException();
|
||||
}
|
||||
|
||||
/*
|
||||
* Enable ETag Support (this is already the default)
|
||||
*/
|
||||
setETagSupport(ETagSupportEnum.ENABLED);
|
||||
|
||||
/*
|
||||
* This server tries to dynamically generate narratives
|
||||
*/
|
||||
FhirContext ctx = getFhirContext();
|
||||
ctx.setNarrativeGenerator(new DefaultThymeleafNarrativeGenerator());
|
||||
|
||||
/*
|
||||
* Default to XML and pretty printing
|
||||
*/
|
||||
setDefaultPrettyPrint(true);
|
||||
setDefaultResponseEncoding(EncodingEnum.JSON);
|
||||
|
||||
/*
|
||||
* This is a simple paging strategy that keeps the last 10 searches in memory
|
||||
*/
|
||||
setPagingProvider(new FifoMemoryPagingProvider(10));
|
||||
|
||||
/*
|
||||
* Load interceptors for the server from Spring (these are defined in FhirServerConfig.java)
|
||||
*/
|
||||
Collection<IServerInterceptor> interceptorBeans = myAppCtx.getBeansOfType(IServerInterceptor.class).values();
|
||||
for (IServerInterceptor interceptor : interceptorBeans) {
|
||||
this.registerInterceptor(interceptor);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,16 @@
|
|||
<configuration scan="true" scanPeriod="30 seconds">
|
||||
|
||||
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
|
||||
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
|
||||
<level>INFO</level>
|
||||
</filter>
|
||||
<encoder>
|
||||
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
|
||||
</encoder>
|
||||
</appender>
|
||||
|
||||
<root level="INFO">
|
||||
<appender-ref ref="STDOUT" />
|
||||
</root>
|
||||
|
||||
</configuration>
|
||||
|
|
@ -0,0 +1,67 @@
|
|||
<!DOCTYPE html>
|
||||
<html lang="en">
|
||||
<head th:include="tmpl-head :: head">
|
||||
<title>About This Server</title>
|
||||
</head>
|
||||
|
||||
<body>
|
||||
<form action="" method="get" id="outerForm">
|
||||
<div th:replace="tmpl-navbar-top :: top" ></div>
|
||||
|
||||
<div class="container-fluid">
|
||||
<div class="row">
|
||||
<div th:replace="tmpl-navbar-left :: left" ></div>
|
||||
|
||||
<div class="col-sm-9 col-sm-offset-3 col-md-9 col-md-offset-3 main">
|
||||
|
||||
<div th:replace="tmpl-banner :: banner"></div>
|
||||
|
||||
<div class="panel panel-default">
|
||||
<div class="panel-heading">
|
||||
<h3 class="panel-title">About This Server</h3>
|
||||
</div>
|
||||
<div class="panel-body">
|
||||
<div class="pull-right">
|
||||
<object data="img/fhirtest-architecture.svg" width="383" height="369" type="image/svg+xml"></object>
|
||||
</div>
|
||||
<p>
|
||||
This server provides a nearly complete implementation of the FHIR Specification
|
||||
using a 100% open source software stack. It is hosted by University Health Network.
|
||||
</p>
|
||||
<p>
|
||||
The architecture in use here is shown in the image on the right. This server is built
|
||||
from a number of modules of the
|
||||
<a href="https://github.com/jamesagnew/hapi-fhir/">HAPI FHIR</a>
|
||||
project, which is a 100% open-source (Apache 2.0 Licensed) Java based
|
||||
implementation of the FHIR specification.
|
||||
</p>
|
||||
<p>
|
||||
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
<div class="panel panel-default">
|
||||
<div class="panel-heading">
|
||||
<h3 class="panel-title">Data On This Server</h3>
|
||||
</div>
|
||||
<div class="panel-body">
|
||||
<p>
|
||||
This server is regularly loaded with a standard set of test data sourced
|
||||
from UHN's own testing environment. Do not use this server to store any data
|
||||
that you will need later, as we will be regularly resetting it.
|
||||
</p>
|
||||
<p>
|
||||
This is not a production server and it provides no privacy. Do not store any
|
||||
confidential data here.
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div th:replace="tmpl-footer :: footer" ></div>
|
||||
</form>
|
||||
</body>
|
||||
</html>
|
||||
|
|
@ -0,0 +1,16 @@
|
|||
<!DOCTYPE html>
|
||||
<html lang="en">
|
||||
<div th:fragment="footer">
|
||||
<script>
|
||||
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
|
||||
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
|
||||
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
|
||||
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
|
||||
|
||||
ga('create', 'UA-1395874-6', 'auto');
|
||||
ga('require', 'displayfeatures');
|
||||
ga('require', 'linkid', 'linkid.js');
|
||||
ga('send', 'pageview');
|
||||
</script>
|
||||
</div>
|
||||
</html>
|
||||
|
|
@ -0,0 +1,8 @@
|
|||
<!DOCTYPE html>
|
||||
<html lang="en">
|
||||
<div th:fragment="banner" class="well">
|
||||
<p>
|
||||
This server is deployed using HAPI-FHIR CLI (Command Line Interface).
|
||||
</p>
|
||||
</div>
|
||||
</html>
|
||||
|
|
@ -0,0 +1,112 @@
|
|||
<web-app xmlns="http://java.sun.com/xml/ns/javaee" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="3.0"
|
||||
xsi:schemaLocation="http://java.sun.com/xml/ns/javaee ./xsd/web-app_3_0.xsd">
|
||||
|
||||
<!--
|
||||
<listener>
|
||||
<listener-class>org.springframework.web.context.ContextLoaderListener</listener-class>
|
||||
</listener>
|
||||
<context-param>
|
||||
<param-name>contextClass</param-name>
|
||||
<param-value>
|
||||
org.springframework.web.context.support.AnnotationConfigWebApplicationContext
|
||||
</param-value>
|
||||
</context-param>
|
||||
<context-param>
|
||||
<param-name>contextConfigLocation</param-name>
|
||||
<param-value>
|
||||
ca.uhn.fhir.jpa.demo.FhirServerConfig
|
||||
</param-value>
|
||||
</context-param>
|
||||
-->
|
||||
|
||||
<!-- Servlets -->
|
||||
|
||||
<servlet>
|
||||
<servlet-name>spring</servlet-name>
|
||||
<servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class>
|
||||
<init-param>
|
||||
<param-name>contextClass</param-name>
|
||||
<param-value>org.springframework.web.context.support.AnnotationConfigWebApplicationContext</param-value>
|
||||
</init-param>
|
||||
<init-param>
|
||||
<param-name>contextConfigLocation</param-name>
|
||||
<param-value>ca.uhn.fhir.jpa.demo.FhirTesterConfig</param-value>
|
||||
</init-param>
|
||||
<load-on-startup>2</load-on-startup>
|
||||
</servlet>
|
||||
|
||||
<!--
|
||||
<servlet>
|
||||
<servlet-name>fhirServlet</servlet-name>
|
||||
<servlet-class>ca.uhn.fhir.jpa.demo.JpaServerDemo</servlet-class>
|
||||
<init-param>
|
||||
<param-name>ImplementationDescription</param-name>
|
||||
<param-value>FHIR JPA Server</param-value>
|
||||
</init-param>
|
||||
<init-param>
|
||||
<param-name>FhirVersion</param-name>
|
||||
<param-value>DSTU2</param-value>
|
||||
</init-param>
|
||||
<load-on-startup>1</load-on-startup>
|
||||
</servlet>
|
||||
|
||||
<servlet-mapping>
|
||||
<servlet-name>fhirServlet</servlet-name>
|
||||
<url-pattern>/baseDstu2/*</url-pattern>
|
||||
</servlet-mapping>
|
||||
-->
|
||||
|
||||
<servlet-mapping>
|
||||
<servlet-name>spring</servlet-name>
|
||||
<url-pattern>/</url-pattern>
|
||||
</servlet-mapping>
|
||||
|
||||
|
||||
|
||||
<!-- This filters provide support for Cross Origin Resource Sharing (CORS) -->
|
||||
<filter>
|
||||
<filter-name>CORS Filter</filter-name>
|
||||
<filter-class>org.ebaysf.web.cors.CORSFilter</filter-class>
|
||||
<init-param>
|
||||
<description>A comma separated list of allowed origins. Note: An '*' cannot be used for an allowed origin when using credentials.</description>
|
||||
<param-name>cors.allowed.origins</param-name>
|
||||
<param-value>*</param-value>
|
||||
</init-param>
|
||||
<init-param>
|
||||
<description>A comma separated list of HTTP verbs, using which a CORS request can be made.</description>
|
||||
<param-name>cors.allowed.methods</param-name>
|
||||
<param-value>GET,POST,PUT,DELETE,OPTIONS</param-value>
|
||||
</init-param>
|
||||
<init-param>
|
||||
<description>A comma separated list of allowed headers when making a non simple CORS request.</description>
|
||||
<param-name>cors.allowed.headers</param-name>
|
||||
<param-value>X-FHIR-Starter,Origin,Accept,X-Requested-With,Content-Type,Access-Control-Request-Method,Access-Control-Request-Headers</param-value>
|
||||
</init-param>
|
||||
<init-param>
|
||||
<description>A comma separated list non-standard response headers that will be exposed to XHR2 object.</description>
|
||||
<param-name>cors.exposed.headers</param-name>
|
||||
<param-value>Location,Content-Location</param-value>
|
||||
</init-param>
|
||||
<init-param>
|
||||
<description>A flag that suggests if CORS is supported with cookies</description>
|
||||
<param-name>cors.support.credentials</param-name>
|
||||
<param-value>true</param-value>
|
||||
</init-param>
|
||||
<init-param>
|
||||
<description>A flag to control logging</description>
|
||||
<param-name>cors.logging.enabled</param-name>
|
||||
<param-value>true</param-value>
|
||||
</init-param>
|
||||
<init-param>
|
||||
<description>Indicates how long (in seconds) the results of a preflight request can be cached in a preflight result cache.</description>
|
||||
<param-name>cors.preflight.maxage</param-name>
|
||||
<param-value>300</param-value>
|
||||
</init-param>
|
||||
</filter>
|
||||
<filter-mapping>
|
||||
<filter-name>CORS Filter</filter-name>
|
||||
<url-pattern>/*</url-pattern>
|
||||
</filter-mapping>
|
||||
|
||||
|
||||
</web-app>
|
||||
File diff suppressed because it is too large
Load Diff
|
|
@ -0,0 +1,389 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<xsd:schema xmlns="http://www.w3.org/2001/XMLSchema"
|
||||
targetNamespace="http://java.sun.com/xml/ns/javaee"
|
||||
xmlns:javaee="http://java.sun.com/xml/ns/javaee"
|
||||
xmlns:xsd="http://www.w3.org/2001/XMLSchema"
|
||||
elementFormDefault="qualified"
|
||||
attributeFormDefault="unqualified"
|
||||
version="2.2">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS HEADER.
|
||||
|
||||
Copyright 2003-2009 Sun Microsystems, Inc. All rights reserved.
|
||||
|
||||
The contents of this file are subject to the terms of either the
|
||||
GNU General Public License Version 2 only ("GPL") or the Common
|
||||
Development and Distribution License("CDDL") (collectively, the
|
||||
"License"). You may not use this file except in compliance with
|
||||
the License. You can obtain a copy of the License at
|
||||
https://glassfish.dev.java.net/public/CDDL+GPL.html or
|
||||
glassfish/bootstrap/legal/LICENSE.txt. See the License for the
|
||||
specific language governing permissions and limitations under the
|
||||
License.
|
||||
|
||||
When distributing the software, include this License Header
|
||||
Notice in each file and include the License file at
|
||||
glassfish/bootstrap/legal/LICENSE.txt. Sun designates this
|
||||
particular file as subject to the "Classpath" exception as
|
||||
provided by Sun in the GPL Version 2 section of the License file
|
||||
that accompanied this code. If applicable, add the following
|
||||
below the License Header, with the fields enclosed by brackets []
|
||||
replaced by your own identifying information:
|
||||
"Portions Copyrighted [year] [name of copyright owner]"
|
||||
|
||||
Contributor(s):
|
||||
|
||||
If you wish your version of this file to be governed by only the
|
||||
CDDL or only the GPL Version 2, indicate your decision by adding
|
||||
"[Contributor] elects to include this software in this
|
||||
distribution under the [CDDL or GPL Version 2] license." If you
|
||||
don't indicate a single choice of license, a recipient has the
|
||||
option to distribute your version of this file under either the
|
||||
CDDL, the GPL Version 2 or to extend the choice of license to its
|
||||
licensees as provided above. However, if you add GPL Version 2
|
||||
code and therefore, elected the GPL Version 2 license, then the
|
||||
option applies only if the new code is made subject to such
|
||||
option by the copyright holder.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
This is the XML Schema for the JSP 2.2 deployment descriptor
|
||||
types. The JSP 2.2 schema contains all the special
|
||||
structures and datatypes that are necessary to use JSP files
|
||||
from a web application.
|
||||
|
||||
The contents of this schema is used by the web-common_3_0.xsd
|
||||
file to define JSP specific content.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The following conventions apply to all Java EE
|
||||
deployment descriptor elements unless indicated otherwise.
|
||||
|
||||
- In elements that specify a pathname to a file within the
|
||||
same JAR file, relative filenames (i.e., those not
|
||||
starting with "/") are considered relative to the root of
|
||||
the JAR file's namespace. Absolute filenames (i.e., those
|
||||
starting with "/") also specify names in the root of the
|
||||
JAR file's namespace. In general, relative names are
|
||||
preferred. The exception is .war files where absolute
|
||||
names are preferred for consistency with the Servlet API.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
|
||||
<xsd:include schemaLocation="javaee_6.xsd"/>
|
||||
|
||||
|
||||
<!-- **************************************************** -->
|
||||
|
||||
<xsd:complexType name="jsp-configType">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The jsp-configType is used to provide global configuration
|
||||
information for the JSP files in a web application. It has
|
||||
two subelements, taglib and jsp-property-group.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:sequence>
|
||||
<xsd:element name="taglib"
|
||||
type="javaee:taglibType"
|
||||
minOccurs="0"
|
||||
maxOccurs="unbounded"/>
|
||||
<xsd:element name="jsp-property-group"
|
||||
type="javaee:jsp-property-groupType"
|
||||
minOccurs="0"
|
||||
maxOccurs="unbounded"/>
|
||||
</xsd:sequence>
|
||||
<xsd:attribute name="id"
|
||||
type="xsd:ID"/>
|
||||
</xsd:complexType>
|
||||
|
||||
|
||||
<!-- **************************************************** -->
|
||||
|
||||
<xsd:complexType name="jsp-fileType">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The jsp-file element contains the full path to a JSP file
|
||||
within the web application beginning with a `/'.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:simpleContent>
|
||||
<xsd:restriction base="javaee:pathType"/>
|
||||
</xsd:simpleContent>
|
||||
</xsd:complexType>
|
||||
|
||||
|
||||
<!-- **************************************************** -->
|
||||
|
||||
<xsd:complexType name="jsp-property-groupType">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The jsp-property-groupType is used to group a number of
|
||||
files so they can be given global property information.
|
||||
All files so described are deemed to be JSP files. The
|
||||
following additional properties can be described:
|
||||
|
||||
- Control whether EL is ignored.
|
||||
- Control whether scripting elements are invalid.
|
||||
- Indicate pageEncoding information.
|
||||
- Indicate that a resource is a JSP document (XML).
|
||||
- Prelude and Coda automatic includes.
|
||||
- Control whether the character sequence #{ is allowed
|
||||
when used as a String literal.
|
||||
- Control whether template text containing only
|
||||
whitespaces must be removed from the response output.
|
||||
- Indicate the default contentType information.
|
||||
- Indicate the default buffering model for JspWriter
|
||||
- Control whether error should be raised for the use of
|
||||
undeclared namespaces in a JSP page.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:sequence>
|
||||
<xsd:group ref="javaee:descriptionGroup"/>
|
||||
<xsd:element name="url-pattern"
|
||||
type="javaee:url-patternType"
|
||||
maxOccurs="unbounded"/>
|
||||
<xsd:element name="el-ignored"
|
||||
type="javaee:true-falseType"
|
||||
minOccurs="0">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
Can be used to easily set the isELIgnored
|
||||
property of a group of JSP pages. By default, the
|
||||
EL evaluation is enabled for Web Applications using
|
||||
a Servlet 2.4 or greater web.xml, and disabled
|
||||
otherwise.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="page-encoding"
|
||||
type="javaee:string"
|
||||
minOccurs="0">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The valid values of page-encoding are those of the
|
||||
pageEncoding page directive. It is a
|
||||
translation-time error to name different encodings
|
||||
in the pageEncoding attribute of the page directive
|
||||
of a JSP page and in a JSP configuration element
|
||||
matching the page. It is also a translation-time
|
||||
error to name different encodings in the prolog
|
||||
or text declaration of a document in XML syntax and
|
||||
in a JSP configuration element matching the document.
|
||||
It is legal to name the same encoding through
|
||||
mulitple mechanisms.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="scripting-invalid"
|
||||
type="javaee:true-falseType"
|
||||
minOccurs="0">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
Can be used to easily disable scripting in a
|
||||
group of JSP pages. By default, scripting is
|
||||
enabled.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="is-xml"
|
||||
type="javaee:true-falseType"
|
||||
minOccurs="0">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
If true, denotes that the group of resources
|
||||
that match the URL pattern are JSP documents,
|
||||
and thus must be interpreted as XML documents.
|
||||
If false, the resources are assumed to not
|
||||
be JSP documents, unless there is another
|
||||
property group that indicates otherwise.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="include-prelude"
|
||||
type="javaee:pathType"
|
||||
minOccurs="0"
|
||||
maxOccurs="unbounded">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The include-prelude element is a context-relative
|
||||
path that must correspond to an element in the
|
||||
Web Application. When the element is present,
|
||||
the given path will be automatically included (as
|
||||
in an include directive) at the beginning of each
|
||||
JSP page in this jsp-property-group.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="include-coda"
|
||||
type="javaee:pathType"
|
||||
minOccurs="0"
|
||||
maxOccurs="unbounded">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The include-coda element is a context-relative
|
||||
path that must correspond to an element in the
|
||||
Web Application. When the element is present,
|
||||
the given path will be automatically included (as
|
||||
in an include directive) at the end of each
|
||||
JSP page in this jsp-property-group.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="deferred-syntax-allowed-as-literal"
|
||||
type="javaee:true-falseType"
|
||||
minOccurs="0">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The character sequence #{ is reserved for EL expressions.
|
||||
Consequently, a translation error occurs if the #{
|
||||
character sequence is used as a String literal, unless
|
||||
this element is enabled (true). Disabled (false) by
|
||||
default.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="trim-directive-whitespaces"
|
||||
type="javaee:true-falseType"
|
||||
minOccurs="0">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
Indicates that template text containing only whitespaces
|
||||
must be removed from the response output. It has no
|
||||
effect on JSP documents (XML syntax). Disabled (false)
|
||||
by default.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="default-content-type"
|
||||
type="javaee:string"
|
||||
minOccurs="0">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The valid values of default-content-type are those of the
|
||||
contentType page directive. It specifies the default
|
||||
response contentType if the page directive does not include
|
||||
a contentType attribute.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="buffer"
|
||||
type="javaee:string"
|
||||
minOccurs="0">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The valid values of buffer are those of the
|
||||
buffer page directive. It specifies if buffering should be
|
||||
used for the output to response, and if so, the size of the
|
||||
buffer to use.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="error-on-undeclared-namespace"
|
||||
type="javaee:true-falseType"
|
||||
minOccurs="0">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The default behavior when a tag with unknown namespace is used
|
||||
in a JSP page (regular syntax) is to silently ignore it. If
|
||||
set to true, then an error must be raised during the translation
|
||||
time when an undeclared tag is used in a JSP page. Disabled
|
||||
(false) by default.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
</xsd:sequence>
|
||||
<xsd:attribute name="id"
|
||||
type="xsd:ID"/>
|
||||
</xsd:complexType>
|
||||
|
||||
|
||||
<!-- **************************************************** -->
|
||||
|
||||
<xsd:complexType name="taglibType">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The taglibType defines the syntax for declaring in
|
||||
the deployment descriptor that a tag library is
|
||||
available to the application. This can be done
|
||||
to override implicit map entries from TLD files and
|
||||
from the container.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:sequence>
|
||||
<xsd:element name="taglib-uri"
|
||||
type="javaee:string">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
A taglib-uri element describes a URI identifying a
|
||||
tag library used in the web application. The body
|
||||
of the taglib-uri element may be either an
|
||||
absolute URI specification, or a relative URI.
|
||||
There should be no entries in web.xml with the
|
||||
same taglib-uri value.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
<xsd:element name="taglib-location"
|
||||
type="javaee:pathType">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
the taglib-location element contains the location
|
||||
(as a resource relative to the root of the web
|
||||
application) where to find the Tag Library
|
||||
Description file for the tag library.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
</xsd:element>
|
||||
</xsd:sequence>
|
||||
<xsd:attribute name="id"
|
||||
type="xsd:ID"/>
|
||||
</xsd:complexType>
|
||||
|
||||
</xsd:schema>
|
||||
|
|
@ -0,0 +1,272 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<xsd:schema xmlns="http://www.w3.org/2001/XMLSchema"
|
||||
targetNamespace="http://java.sun.com/xml/ns/javaee"
|
||||
xmlns:javaee="http://java.sun.com/xml/ns/javaee"
|
||||
xmlns:xsd="http://www.w3.org/2001/XMLSchema"
|
||||
elementFormDefault="qualified"
|
||||
attributeFormDefault="unqualified"
|
||||
version="3.0">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS HEADER.
|
||||
|
||||
Copyright 2003-2009 Sun Microsystems, Inc. All rights reserved.
|
||||
|
||||
The contents of this file are subject to the terms of either the
|
||||
GNU General Public License Version 2 only ("GPL") or the Common
|
||||
Development and Distribution License("CDDL") (collectively, the
|
||||
"License"). You may not use this file except in compliance with
|
||||
the License. You can obtain a copy of the License at
|
||||
https://glassfish.dev.java.net/public/CDDL+GPL.html or
|
||||
glassfish/bootstrap/legal/LICENSE.txt. See the License for the
|
||||
specific language governing permissions and limitations under the
|
||||
License.
|
||||
|
||||
When distributing the software, include this License Header
|
||||
Notice in each file and include the License file at
|
||||
glassfish/bootstrap/legal/LICENSE.txt. Sun designates this
|
||||
particular file as subject to the "Classpath" exception as
|
||||
provided by Sun in the GPL Version 2 section of the License file
|
||||
that accompanied this code. If applicable, add the following
|
||||
below the License Header, with the fields enclosed by brackets []
|
||||
replaced by your own identifying information:
|
||||
"Portions Copyrighted [year] [name of copyright owner]"
|
||||
|
||||
Contributor(s):
|
||||
|
||||
If you wish your version of this file to be governed by only the
|
||||
CDDL or only the GPL Version 2, indicate your decision by adding
|
||||
"[Contributor] elects to include this software in this
|
||||
distribution under the [CDDL or GPL Version 2] license." If you
|
||||
don't indicate a single choice of license, a recipient has the
|
||||
option to distribute your version of this file under either the
|
||||
CDDL, the GPL Version 2 or to extend the choice of license to its
|
||||
licensees as provided above. However, if you add GPL Version 2
|
||||
code and therefore, elected the GPL Version 2 license, then the
|
||||
option applies only if the new code is made subject to such
|
||||
option by the copyright holder.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
<![CDATA[[
|
||||
This is the XML Schema for the Servlet 3.0 deployment descriptor.
|
||||
The deployment descriptor must be named "WEB-INF/web.xml" in the
|
||||
web application's war file. All Servlet deployment descriptors
|
||||
must indicate the web application schema by using the Java EE
|
||||
namespace:
|
||||
|
||||
http://java.sun.com/xml/ns/javaee
|
||||
|
||||
and by indicating the version of the schema by
|
||||
using the version element as shown below:
|
||||
|
||||
<web-app xmlns="http://java.sun.com/xml/ns/javaee"
|
||||
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
||||
xsi:schemaLocation="..."
|
||||
version="3.0">
|
||||
...
|
||||
</web-app>
|
||||
|
||||
The instance documents may indicate the published version of
|
||||
the schema using the xsi:schemaLocation attribute for Java EE
|
||||
namespace with the following location:
|
||||
|
||||
http://java.sun.com/xml/ns/javaee/web-app_3_0.xsd
|
||||
|
||||
]]>
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The following conventions apply to all Java EE
|
||||
deployment descriptor elements unless indicated otherwise.
|
||||
|
||||
- In elements that specify a pathname to a file within the
|
||||
same JAR file, relative filenames (i.e., those not
|
||||
starting with "/") are considered relative to the root of
|
||||
the JAR file's namespace. Absolute filenames (i.e., those
|
||||
starting with "/") also specify names in the root of the
|
||||
JAR file's namespace. In general, relative names are
|
||||
preferred. The exception is .war files where absolute
|
||||
names are preferred for consistency with the Servlet API.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
|
||||
<xsd:include schemaLocation="web-common_3_0.xsd"/>
|
||||
|
||||
|
||||
<!-- **************************************************** -->
|
||||
|
||||
<xsd:element name="web-app"
|
||||
type="javaee:web-appType">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The web-app element is the root of the deployment
|
||||
descriptor for a web application. Note that the sub-elements
|
||||
of this element can be in the arbitrary order. Because of
|
||||
that, the multiplicity of the elements of distributable,
|
||||
session-config, welcome-file-list, jsp-config, login-config,
|
||||
and locale-encoding-mapping-list was changed from "?" to "*"
|
||||
in this schema. However, the deployment descriptor instance
|
||||
file must not contain multiple elements of session-config,
|
||||
jsp-config, and login-config. When there are multiple elements of
|
||||
welcome-file-list or locale-encoding-mapping-list, the container
|
||||
must concatenate the element contents. The multiple occurence
|
||||
of the element distributable is redundant and the container
|
||||
treats that case exactly in the same way when there is only
|
||||
one distributable.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:unique name="web-common-servlet-name-uniqueness">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The servlet element contains the name of a servlet.
|
||||
The name must be unique within the web application.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:selector xpath="javaee:servlet"/>
|
||||
<xsd:field xpath="javaee:servlet-name"/>
|
||||
</xsd:unique>
|
||||
<xsd:unique name="web-common-filter-name-uniqueness">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The filter element contains the name of a filter.
|
||||
The name must be unique within the web application.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:selector xpath="javaee:filter"/>
|
||||
<xsd:field xpath="javaee:filter-name"/>
|
||||
</xsd:unique>
|
||||
<xsd:unique name="web-common-ejb-local-ref-name-uniqueness">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The ejb-local-ref-name element contains the name of an EJB
|
||||
reference. The EJB reference is an entry in the web
|
||||
application's environment and is relative to the
|
||||
java:comp/env context. The name must be unique within
|
||||
the web application.
|
||||
|
||||
It is recommended that name is prefixed with "ejb/".
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:selector xpath="javaee:ejb-local-ref"/>
|
||||
<xsd:field xpath="javaee:ejb-ref-name"/>
|
||||
</xsd:unique>
|
||||
<xsd:unique name="web-common-ejb-ref-name-uniqueness">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The ejb-ref-name element contains the name of an EJB
|
||||
reference. The EJB reference is an entry in the web
|
||||
application's environment and is relative to the
|
||||
java:comp/env context. The name must be unique within
|
||||
the web application.
|
||||
|
||||
It is recommended that name is prefixed with "ejb/".
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:selector xpath="javaee:ejb-ref"/>
|
||||
<xsd:field xpath="javaee:ejb-ref-name"/>
|
||||
</xsd:unique>
|
||||
<xsd:unique name="web-common-resource-env-ref-uniqueness">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The resource-env-ref-name element specifies the name of
|
||||
a resource environment reference; its value is the
|
||||
environment entry name used in the web application code.
|
||||
The name is a JNDI name relative to the java:comp/env
|
||||
context and must be unique within a web application.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:selector xpath="javaee:resource-env-ref"/>
|
||||
<xsd:field xpath="javaee:resource-env-ref-name"/>
|
||||
</xsd:unique>
|
||||
<xsd:unique name="web-common-message-destination-ref-uniqueness">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The message-destination-ref-name element specifies the name of
|
||||
a message destination reference; its value is the
|
||||
environment entry name used in the web application code.
|
||||
The name is a JNDI name relative to the java:comp/env
|
||||
context and must be unique within a web application.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:selector xpath="javaee:message-destination-ref"/>
|
||||
<xsd:field xpath="javaee:message-destination-ref-name"/>
|
||||
</xsd:unique>
|
||||
<xsd:unique name="web-common-res-ref-name-uniqueness">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The res-ref-name element specifies the name of a
|
||||
resource manager connection factory reference. The name
|
||||
is a JNDI name relative to the java:comp/env context.
|
||||
The name must be unique within a web application.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:selector xpath="javaee:resource-ref"/>
|
||||
<xsd:field xpath="javaee:res-ref-name"/>
|
||||
</xsd:unique>
|
||||
<xsd:unique name="web-common-env-entry-name-uniqueness">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The env-entry-name element contains the name of a web
|
||||
application's environment entry. The name is a JNDI
|
||||
name relative to the java:comp/env context. The name
|
||||
must be unique within a web application.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:selector xpath="javaee:env-entry"/>
|
||||
<xsd:field xpath="javaee:env-entry-name"/>
|
||||
</xsd:unique>
|
||||
<xsd:key name="web-common-role-name-key">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
A role-name-key is specified to allow the references
|
||||
from the security-role-refs.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:selector xpath="javaee:security-role"/>
|
||||
<xsd:field xpath="javaee:role-name"/>
|
||||
</xsd:key>
|
||||
<xsd:keyref name="web-common-role-name-references"
|
||||
refer="javaee:web-common-role-name-key">
|
||||
<xsd:annotation>
|
||||
<xsd:documentation>
|
||||
|
||||
The keyref indicates the references from
|
||||
security-role-ref to a specified role-name.
|
||||
|
||||
</xsd:documentation>
|
||||
</xsd:annotation>
|
||||
<xsd:selector xpath="javaee:servlet/javaee:security-role-ref"/>
|
||||
<xsd:field xpath="javaee:role-link"/>
|
||||
</xsd:keyref>
|
||||
</xsd:element>
|
||||
|
||||
</xsd:schema>
|
||||
File diff suppressed because it is too large
Load Diff
|
|
@ -0,0 +1,287 @@
|
|||
<?xml version='1.0'?>
|
||||
<?xml-stylesheet href="../2008/09/xsd.xsl" type="text/xsl"?>
|
||||
<xs:schema targetNamespace="http://www.w3.org/XML/1998/namespace"
|
||||
xmlns:xs="http://www.w3.org/2001/XMLSchema"
|
||||
xmlns ="http://www.w3.org/1999/xhtml"
|
||||
xml:lang="en">
|
||||
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
<div>
|
||||
<h1>About the XML namespace</h1>
|
||||
|
||||
<div class="bodytext">
|
||||
<p>
|
||||
This schema document describes the XML namespace, in a form
|
||||
suitable for import by other schema documents.
|
||||
</p>
|
||||
<p>
|
||||
See <a href="http://www.w3.org/XML/1998/namespace.html">
|
||||
http://www.w3.org/XML/1998/namespace.html</a> and
|
||||
<a href="http://www.w3.org/TR/REC-xml">
|
||||
http://www.w3.org/TR/REC-xml</a> for information
|
||||
about this namespace.
|
||||
</p>
|
||||
<p>
|
||||
Note that local names in this namespace are intended to be
|
||||
defined only by the World Wide Web Consortium or its subgroups.
|
||||
The names currently defined in this namespace are listed below.
|
||||
They should not be used with conflicting semantics by any Working
|
||||
Group, specification, or document instance.
|
||||
</p>
|
||||
<p>
|
||||
See further below in this document for more information about <a
|
||||
href="#usage">how to refer to this schema document from your own
|
||||
XSD schema documents</a> and about <a href="#nsversioning">the
|
||||
namespace-versioning policy governing this schema document</a>.
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
|
||||
<xs:attribute name="lang">
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
<div>
|
||||
|
||||
<h3>lang (as an attribute name)</h3>
|
||||
<p>
|
||||
denotes an attribute whose value
|
||||
is a language code for the natural language of the content of
|
||||
any element; its value is inherited. This name is reserved
|
||||
by virtue of its definition in the XML specification.</p>
|
||||
|
||||
</div>
|
||||
<div>
|
||||
<h4>Notes</h4>
|
||||
<p>
|
||||
Attempting to install the relevant ISO 2- and 3-letter
|
||||
codes as the enumerated possible values is probably never
|
||||
going to be a realistic possibility.
|
||||
</p>
|
||||
<p>
|
||||
See BCP 47 at <a href="http://www.rfc-editor.org/rfc/bcp/bcp47.txt">
|
||||
http://www.rfc-editor.org/rfc/bcp/bcp47.txt</a>
|
||||
and the IANA language subtag registry at
|
||||
<a href="http://www.iana.org/assignments/language-subtag-registry">
|
||||
http://www.iana.org/assignments/language-subtag-registry</a>
|
||||
for further information.
|
||||
</p>
|
||||
<p>
|
||||
The union allows for the 'un-declaration' of xml:lang with
|
||||
the empty string.
|
||||
</p>
|
||||
</div>
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
<xs:simpleType>
|
||||
<xs:union memberTypes="xs:language">
|
||||
<xs:simpleType>
|
||||
<xs:restriction base="xs:string">
|
||||
<xs:enumeration value=""/>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
</xs:union>
|
||||
</xs:simpleType>
|
||||
</xs:attribute>
|
||||
|
||||
<xs:attribute name="space">
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
<div>
|
||||
|
||||
<h3>space (as an attribute name)</h3>
|
||||
<p>
|
||||
denotes an attribute whose
|
||||
value is a keyword indicating what whitespace processing
|
||||
discipline is intended for the content of the element; its
|
||||
value is inherited. This name is reserved by virtue of its
|
||||
definition in the XML specification.</p>
|
||||
|
||||
</div>
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
<xs:simpleType>
|
||||
<xs:restriction base="xs:NCName">
|
||||
<xs:enumeration value="default"/>
|
||||
<xs:enumeration value="preserve"/>
|
||||
</xs:restriction>
|
||||
</xs:simpleType>
|
||||
</xs:attribute>
|
||||
|
||||
<xs:attribute name="base" type="xs:anyURI"> <xs:annotation>
|
||||
<xs:documentation>
|
||||
<div>
|
||||
|
||||
<h3>base (as an attribute name)</h3>
|
||||
<p>
|
||||
denotes an attribute whose value
|
||||
provides a URI to be used as the base for interpreting any
|
||||
relative URIs in the scope of the element on which it
|
||||
appears; its value is inherited. This name is reserved
|
||||
by virtue of its definition in the XML Base specification.</p>
|
||||
|
||||
<p>
|
||||
See <a
|
||||
href="http://www.w3.org/TR/xmlbase/">http://www.w3.org/TR/xmlbase/</a>
|
||||
for information about this attribute.
|
||||
</p>
|
||||
</div>
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
</xs:attribute>
|
||||
|
||||
<xs:attribute name="id" type="xs:ID">
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
<div>
|
||||
|
||||
<h3>id (as an attribute name)</h3>
|
||||
<p>
|
||||
denotes an attribute whose value
|
||||
should be interpreted as if declared to be of type ID.
|
||||
This name is reserved by virtue of its definition in the
|
||||
xml:id specification.</p>
|
||||
|
||||
<p>
|
||||
See <a
|
||||
href="http://www.w3.org/TR/xml-id/">http://www.w3.org/TR/xml-id/</a>
|
||||
for information about this attribute.
|
||||
</p>
|
||||
</div>
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
</xs:attribute>
|
||||
|
||||
<xs:attributeGroup name="specialAttrs">
|
||||
<xs:attribute ref="xml:base"/>
|
||||
<xs:attribute ref="xml:lang"/>
|
||||
<xs:attribute ref="xml:space"/>
|
||||
<xs:attribute ref="xml:id"/>
|
||||
</xs:attributeGroup>
|
||||
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
<div>
|
||||
|
||||
<h3>Father (in any context at all)</h3>
|
||||
|
||||
<div class="bodytext">
|
||||
<p>
|
||||
denotes Jon Bosak, the chair of
|
||||
the original XML Working Group. This name is reserved by
|
||||
the following decision of the W3C XML Plenary and
|
||||
XML Coordination groups:
|
||||
</p>
|
||||
<blockquote>
|
||||
<p>
|
||||
In appreciation for his vision, leadership and
|
||||
dedication the W3C XML Plenary on this 10th day of
|
||||
February, 2000, reserves for Jon Bosak in perpetuity
|
||||
the XML name "xml:Father".
|
||||
</p>
|
||||
</blockquote>
|
||||
</div>
|
||||
</div>
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
<div xml:id="usage" id="usage">
|
||||
<h2><a name="usage">About this schema document</a></h2>
|
||||
|
||||
<div class="bodytext">
|
||||
<p>
|
||||
This schema defines attributes and an attribute group suitable
|
||||
for use by schemas wishing to allow <code>xml:base</code>,
|
||||
<code>xml:lang</code>, <code>xml:space</code> or
|
||||
<code>xml:id</code> attributes on elements they define.
|
||||
</p>
|
||||
<p>
|
||||
To enable this, such a schema must import this schema for
|
||||
the XML namespace, e.g. as follows:
|
||||
</p>
|
||||
<pre>
|
||||
<schema . . .>
|
||||
. . .
|
||||
<import namespace="http://www.w3.org/XML/1998/namespace"
|
||||
schemaLocation="http://www.w3.org/2001/xml.xsd"/>
|
||||
</pre>
|
||||
<p>
|
||||
or
|
||||
</p>
|
||||
<pre>
|
||||
<import namespace="http://www.w3.org/XML/1998/namespace"
|
||||
schemaLocation="http://www.w3.org/2009/01/xml.xsd"/>
|
||||
</pre>
|
||||
<p>
|
||||
Subsequently, qualified reference to any of the attributes or the
|
||||
group defined below will have the desired effect, e.g.
|
||||
</p>
|
||||
<pre>
|
||||
<type . . .>
|
||||
. . .
|
||||
<attributeGroup ref="xml:specialAttrs"/>
|
||||
</pre>
|
||||
<p>
|
||||
will define a type which will schema-validate an instance element
|
||||
with any of those attributes.
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
|
||||
<xs:annotation>
|
||||
<xs:documentation>
|
||||
<div id="nsversioning" xml:id="nsversioning">
|
||||
<h2><a name="nsversioning">Versioning policy for this schema document</a></h2>
|
||||
<div class="bodytext">
|
||||
<p>
|
||||
In keeping with the XML Schema WG's standard versioning
|
||||
policy, this schema document will persist at
|
||||
<a href="http://www.w3.org/2009/01/xml.xsd">
|
||||
http://www.w3.org/2009/01/xml.xsd</a>.
|
||||
</p>
|
||||
<p>
|
||||
At the date of issue it can also be found at
|
||||
<a href="http://www.w3.org/2001/xml.xsd">
|
||||
http://www.w3.org/2001/xml.xsd</a>.
|
||||
</p>
|
||||
<p>
|
||||
The schema document at that URI may however change in the future,
|
||||
in order to remain compatible with the latest version of XML
|
||||
Schema itself, or with the XML namespace itself. In other words,
|
||||
if the XML Schema or XML namespaces change, the version of this
|
||||
document at <a href="http://www.w3.org/2001/xml.xsd">
|
||||
http://www.w3.org/2001/xml.xsd
|
||||
</a>
|
||||
will change accordingly; the version at
|
||||
<a href="http://www.w3.org/2009/01/xml.xsd">
|
||||
http://www.w3.org/2009/01/xml.xsd
|
||||
</a>
|
||||
will not change.
|
||||
</p>
|
||||
<p>
|
||||
Previous dated (and unchanging) versions of this schema
|
||||
document are at:
|
||||
</p>
|
||||
<ul>
|
||||
<li><a href="http://www.w3.org/2009/01/xml.xsd">
|
||||
http://www.w3.org/2009/01/xml.xsd</a></li>
|
||||
<li><a href="http://www.w3.org/2007/08/xml.xsd">
|
||||
http://www.w3.org/2007/08/xml.xsd</a></li>
|
||||
<li><a href="http://www.w3.org/2004/10/xml.xsd">
|
||||
http://www.w3.org/2004/10/xml.xsd</a></li>
|
||||
<li><a href="http://www.w3.org/2001/03/xml.xsd">
|
||||
http://www.w3.org/2001/03/xml.xsd</a></li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
</xs:documentation>
|
||||
</xs:annotation>
|
||||
|
||||
</xs:schema>
|
||||
|
||||
|
|
@ -0,0 +1,81 @@
|
|||
package ca.uhn.fhir.jpa.demo;
|
||||
|
||||
import static org.junit.Assert.assertEquals;
|
||||
|
||||
import java.io.File;
|
||||
import java.io.IOException;
|
||||
|
||||
import org.eclipse.jetty.server.Server;
|
||||
import org.eclipse.jetty.webapp.WebAppContext;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
import org.junit.AfterClass;
|
||||
import org.junit.BeforeClass;
|
||||
import org.junit.Test;
|
||||
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Patient;
|
||||
import ca.uhn.fhir.rest.client.IGenericClient;
|
||||
import ca.uhn.fhir.rest.client.ServerValidationModeEnum;
|
||||
import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
|
||||
|
||||
public class ExampleServerIT {
|
||||
|
||||
private static IGenericClient ourClient;
|
||||
private static final FhirContext ourCtx = FhirContext.forDstu2();
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ExampleServerIT.class);
|
||||
|
||||
private static int ourPort;
|
||||
|
||||
private static Server ourServer;
|
||||
private static String ourServerBase;
|
||||
|
||||
@Test
|
||||
public void testCreateAndRead() throws IOException {
|
||||
String methodName = "testCreateResourceConditional";
|
||||
|
||||
Patient pt = new Patient();
|
||||
pt.addName().addFamily(methodName);
|
||||
IIdType id = ourClient.create().resource(pt).execute().getId();
|
||||
|
||||
Patient pt2 = ourClient.read().resource(Patient.class).withId(id).execute();
|
||||
assertEquals(methodName, pt2.getName().get(0).getFamily().get(0).getValue());
|
||||
}
|
||||
|
||||
@AfterClass
|
||||
public static void afterClass() throws Exception {
|
||||
ourServer.stop();
|
||||
}
|
||||
|
||||
@BeforeClass
|
||||
public static void beforeClass() throws Exception {
|
||||
/*
|
||||
* This runs under maven, and I'm not sure how else to figure out the target directory from code..
|
||||
*/
|
||||
String path = ExampleServerIT.class.getClassLoader().getResource(".keep_hapi-fhir-jpaserver-example").getPath();
|
||||
path = new File(path).getParent();
|
||||
path = new File(path).getParent();
|
||||
path = new File(path).getParent();
|
||||
|
||||
ourLog.info("Project base path is: {}", path);
|
||||
|
||||
ourPort = RandomServerPortProvider.findFreePort();
|
||||
ourServer = new Server(ourPort);
|
||||
|
||||
WebAppContext webAppContext = new WebAppContext();
|
||||
webAppContext.setContextPath("/");
|
||||
webAppContext.setDescriptor(path + "/src/main/webapp/WEB-INF/web.xml");
|
||||
webAppContext.setResourceBase(path + "/target/hapi-fhir-jpaserver-example");
|
||||
webAppContext.setParentLoaderPriority(true);
|
||||
|
||||
ourServer.setHandler(webAppContext);
|
||||
ourServer.start();
|
||||
|
||||
ourCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
|
||||
ourCtx.getRestfulClientFactory().setSocketTimeout(1200 * 1000);
|
||||
ourServerBase = "http://localhost:" + ourPort + "/baseDstu2";
|
||||
ourClient = ourCtx.newRestfulGenericClient(ourServerBase);
|
||||
ourClient.registerInterceptor(new LoggingInterceptor(true));
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,36 @@
|
|||
package ca.uhn.fhir.jpa.demo;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.net.ServerSocket;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
/**
|
||||
* Provides server ports
|
||||
*/
|
||||
public class RandomServerPortProvider {
|
||||
|
||||
private static List<Integer> ourPorts = new ArrayList<Integer>();
|
||||
|
||||
public static int findFreePort() {
|
||||
ServerSocket server;
|
||||
try {
|
||||
server = new ServerSocket(0);
|
||||
int port = server.getLocalPort();
|
||||
ourPorts.add(port);
|
||||
server.close();
|
||||
Thread.sleep(500);
|
||||
return port;
|
||||
} catch (IOException e) {
|
||||
throw new Error(e);
|
||||
} catch (InterruptedException e) {
|
||||
throw new Error(e);
|
||||
}
|
||||
}
|
||||
|
||||
public static List<Integer> list() {
|
||||
return ourPorts;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
|
@ -1,8 +1,7 @@
|
|||
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
|
||||
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
||||
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
|
||||
<!-- Note: HAPI projects use the "hapi-fhir" POM as their base to provide easy management. You do not need to use this in your own projects, so the "parent" tag
|
||||
and it's contents below may be removed if you are using this file as a basis for your own project. -->
|
||||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
|
|
@ -11,236 +10,13 @@
|
|||
</parent>
|
||||
|
||||
<artifactId>hapi-fhir-cli</artifactId>
|
||||
<packaging>jar</packaging>
|
||||
|
||||
<name>HAPI FHIR - Command Line Client</name>
|
||||
|
||||
<dependencies>
|
||||
|
||||
<!-- This dependency includes the core HAPI-FHIR classes -->
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-base</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-jpaserver-example</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
<type>war</type>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-structures-dstu</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-structures-dstu2</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-structures-dstu2.1</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-validation-resources-dstu2.1</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>ch.qos.logback</groupId>
|
||||
<artifactId>logback-classic</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>javax.servlet</groupId>
|
||||
<artifactId>javax.servlet-api</artifactId>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>commons-cli</groupId>
|
||||
<artifactId>commons-cli</artifactId>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.springframework</groupId>
|
||||
<artifactId>spring-core</artifactId>
|
||||
<exclusions>
|
||||
<exclusion>
|
||||
<artifactId>commons-logging</artifactId>
|
||||
<groupId>commons-logging</groupId>
|
||||
</exclusion>
|
||||
</exclusions>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-servlets</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-servlet</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-server</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-util</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty</groupId>
|
||||
<artifactId>jetty-webapp</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty.websocket</groupId>
|
||||
<artifactId>websocket-api</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.eclipse.jetty.websocket</groupId>
|
||||
<artifactId>websocket-client</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.slf4j</groupId>
|
||||
<artifactId>jcl-over-slf4j</artifactId>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.thymeleaf</groupId>
|
||||
<artifactId>thymeleaf</artifactId>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.ebaysf.web</groupId>
|
||||
<artifactId>cors-filter</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>com.phloc</groupId>
|
||||
<artifactId>phloc-schematron</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>com.phloc</groupId>
|
||||
<artifactId>phloc-commons</artifactId>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.fusesource.jansi</groupId>
|
||||
<artifactId>jansi</artifactId>
|
||||
</dependency>
|
||||
|
||||
</dependencies>
|
||||
|
||||
<build>
|
||||
<plugins>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-dependency-plugin</artifactId>
|
||||
<executions>
|
||||
<execution>
|
||||
<id>copy</id>
|
||||
<phase>process-resources</phase>
|
||||
<goals>
|
||||
<goal>copy</goal>
|
||||
</goals>
|
||||
<configuration>
|
||||
<artifactItems>
|
||||
<artifactItem>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-jpaserver-example</artifactId>
|
||||
<version>1.4-SNAPSHOT</version>
|
||||
<type>war</type>
|
||||
<overWrite>true</overWrite>
|
||||
<outputDirectory>target/classes</outputDirectory>
|
||||
<destFileName>hapi-fhir-jpaserver-example.war</destFileName>
|
||||
</artifactItem>
|
||||
</artifactItems>
|
||||
<!-- other configurations here -->
|
||||
</configuration>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-deploy-plugin</artifactId>
|
||||
<configuration>
|
||||
<skip>true</skip>
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-shade-plugin</artifactId>
|
||||
<version>2.4.1</version>
|
||||
<executions>
|
||||
<execution>
|
||||
<phase>package</phase>
|
||||
<goals>
|
||||
<goal>shade</goal>
|
||||
</goals>
|
||||
<configuration>
|
||||
<finalName>hapi-fhir-cli</finalName>
|
||||
<artifactSet>
|
||||
</artifactSet>
|
||||
<transformers>
|
||||
<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
|
||||
<mainClass>ca.uhn.fhir.cli.App</mainClass>
|
||||
</transformer>
|
||||
</transformers>
|
||||
<filters>
|
||||
<filter>
|
||||
<artifact>*</artifact>
|
||||
<excludes>
|
||||
<exclude>**/*.SF</exclude>
|
||||
<exclude>**/*.RSA</exclude>
|
||||
</excludes>
|
||||
</filter>
|
||||
</filters>
|
||||
</configuration>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
</plugins>
|
||||
<pluginManagement>
|
||||
<plugins>
|
||||
<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself. -->
|
||||
<plugin>
|
||||
<groupId>org.eclipse.m2e</groupId>
|
||||
<artifactId>lifecycle-mapping</artifactId>
|
||||
<version>1.0.0</version>
|
||||
<configuration>
|
||||
<lifecycleMappingMetadata>
|
||||
<pluginExecutions>
|
||||
<pluginExecution>
|
||||
<pluginExecutionFilter>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-dependency-plugin</artifactId>
|
||||
<versionRange>[2.10,)</versionRange>
|
||||
<goals>
|
||||
<goal>copy</goal>
|
||||
</goals>
|
||||
</pluginExecutionFilter>
|
||||
<action>
|
||||
<ignore></ignore>
|
||||
</action>
|
||||
</pluginExecution>
|
||||
</pluginExecutions>
|
||||
</lifecycleMappingMetadata>
|
||||
</configuration>
|
||||
</plugin>
|
||||
</plugins>
|
||||
</pluginManagement>
|
||||
</build>
|
||||
<packaging>pom</packaging>
|
||||
|
||||
<name>HAPI FHIR - Command Line Client - Base Project</name>
|
||||
|
||||
<modules>
|
||||
<module>hapi-fhir-cli-jpaserver</module>
|
||||
<module>hapi-fhir-cli-app</module>
|
||||
</modules>
|
||||
|
||||
</project>
|
||||
|
|
|
|||
|
|
@ -1,44 +0,0 @@
|
|||
package ca.uhn.fhir.cli;
|
||||
|
||||
import org.apache.commons.cli.CommandLine;
|
||||
import org.apache.commons.cli.Options;
|
||||
import org.apache.commons.cli.ParseException;
|
||||
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.rest.client.IGenericClient;
|
||||
|
||||
public abstract class BaseCommand implements Comparable<BaseCommand> {
|
||||
|
||||
private FhirContext myFhirCtx;
|
||||
|
||||
public BaseCommand() {
|
||||
super();
|
||||
}
|
||||
|
||||
@Override
|
||||
public int compareTo(BaseCommand theO) {
|
||||
return getCommandName().compareTo(theO.getCommandName());
|
||||
}
|
||||
|
||||
public abstract String getCommandDescription();
|
||||
|
||||
public abstract String getCommandName();
|
||||
|
||||
public abstract Options getOptions();
|
||||
|
||||
protected IGenericClient newClient(FhirContext ctx, String theBaseUrl) {
|
||||
ctx.getRestfulClientFactory().setSocketTimeout(10 * 60 * 1000);
|
||||
IGenericClient fhirClient = ctx.newRestfulGenericClient(theBaseUrl);
|
||||
return fhirClient;
|
||||
}
|
||||
|
||||
public abstract void run(CommandLine theCommandLine) throws ParseException, Exception;
|
||||
|
||||
public FhirContext getFhirCtx() {
|
||||
if (myFhirCtx == null) {
|
||||
myFhirCtx = FhirContext.forDstu2();
|
||||
}
|
||||
return myFhirCtx;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -70,7 +70,6 @@ public class FhirServerConfigDstu21 extends BaseJavaConfigDstu21 {
|
|||
retVal.setPackagesToScan("ca.uhn.fhir.jpa.entity");
|
||||
retVal.setPersistenceProvider(new HibernatePersistenceProvider());
|
||||
retVal.setJpaProperties(jpaProperties());
|
||||
retVal.afterPropertiesSet();
|
||||
return retVal;
|
||||
}
|
||||
|
||||
|
|
|
|||
25
pom.xml
25
pom.xml
|
|
@ -45,20 +45,8 @@
|
|||
|
||||
<dependencies>
|
||||
<!-- Cobertura is here as a 'provided' depdendency just to get the @CoverageIgnore annotation. It would be nice if there was a better way for this.. -->
|
||||
<!--
|
||||
<dependency>
|
||||
<groupId>net.sourceforge.cobertura</groupId>
|
||||
<artifactId>cobertura</artifactId>
|
||||
<version>2.1.1</version>
|
||||
<scope>provided</scope>
|
||||
<exclusions>
|
||||
<exclusion>
|
||||
<artifactId>jetty</artifactId>
|
||||
<groupId>org.mortbay.jetty</groupId>
|
||||
</exclusion>
|
||||
</exclusions>
|
||||
</dependency>
|
||||
-->
|
||||
<!-- <dependency> <groupId>net.sourceforge.cobertura</groupId> <artifactId>cobertura</artifactId> <version>2.1.1</version> <scope>provided</scope> <exclusions> <exclusion> <artifactId>jetty</artifactId>
|
||||
<groupId>org.mortbay.jetty</groupId> </exclusion> </exclusions> </dependency> -->
|
||||
<dependency>
|
||||
<groupId>junit</groupId>
|
||||
<artifactId>junit</artifactId>
|
||||
|
|
@ -245,7 +233,7 @@
|
|||
<!-- Dependency Versions -->
|
||||
<derby_version>10.12.1.1</derby_version>
|
||||
<jersey_version>2.22.1</jersey_version>
|
||||
<jetty_version>9.3.7.v20160115 </jetty_version>
|
||||
<jetty_version>9.3.7.v20160115 </jetty_version>
|
||||
<!-- Note on Hibernate versions: Hibernate 4.3+ uses JPA 2.1, which is too new for a number of platforms including JBoss EAP 6.x and Glassfish 3.0. Upgrade this version with caution! Also note that if
|
||||
you change this, you may get a failure in hibernate4-maven-plugin. See the note in hapi-fhir-jpaserver-base/pom.xml's configuration for that plugin... -->
|
||||
<hibernate_version>5.0.7.Final</hibernate_version>
|
||||
|
|
@ -703,6 +691,11 @@
|
|||
<artifactId>plexus-compiler-javac-errorprone</artifactId>
|
||||
<version>2.7</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.codehaus.plexus</groupId>
|
||||
<artifactId>plexus-utils</artifactId>
|
||||
<version>3.0.22</version>
|
||||
</dependency>
|
||||
</dependencies>
|
||||
</plugin>
|
||||
<plugin>
|
||||
|
|
@ -749,7 +742,7 @@
|
|||
<runOrder>random</runOrder>
|
||||
<argLine>-Dfile.encoding=UTF-8 -Xmx712m</argLine>
|
||||
<forkCount>1</forkCount>
|
||||
<!--<reuseForks>false</reuseForks>-->
|
||||
<!--<reuseForks>false</reuseForks> -->
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
|
|
|
|||
Loading…
Reference in New Issue