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Correctly Expand ValueSets in non-lucene mode (#1573)

This commit is contained in:
James Agnew 2019-10-30 16:21:44 -04:00 committed by GitHub
parent 1fd3948b12 7f62d60c4e
commit cacd243a44
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8 changed files with 181 additions and 36 deletions
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41
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/BaseTermReadSvcImpl.java
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@ -424,13 +424,13 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
private void logConceptsExpanded(String theLogDescriptionPrefix, TermValueSet theTermValueSet, int theConceptsExpanded) {
if (theConceptsExpanded > 0) {
ourLog.info("{}Have expanded {} concepts in ValueSet[{}]", theLogDescriptionPrefix, theConceptsExpanded, theTermValueSet.getUrl());
ourLog.debug("{}Have expanded {} concepts in ValueSet[{}]", theLogDescriptionPrefix, theConceptsExpanded, theTermValueSet.getUrl());
}
}
private void logDesignationsExpanded(String theLogDescriptionPrefix, TermValueSet theTermValueSet, int theDesignationsExpanded) {
if (theDesignationsExpanded > 0) {
ourLog.info("{}Have expanded {} designations in ValueSet[{}]", theLogDescriptionPrefix, theDesignationsExpanded, theTermValueSet.getUrl());
ourLog.debug("{}Have expanded {} designations in ValueSet[{}]", theLogDescriptionPrefix, theDesignationsExpanded, theTermValueSet.getUrl());
}
}
@ -446,7 +446,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
StopWatch sw = new StopWatch();
String valueSetInfo = getValueSetInfo(theValueSetToExpand);
ourLog.info("Working with {}", valueSetInfo);
ourLog.debug("Working with {}", valueSetInfo);
// Handle includes
ourLog.debug("Handling includes");
@ -488,7 +488,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
myTxTemplate.execute(t -> ((ValueSetConceptAccumulator) theValueSetCodeAccumulator).removeGapsFromConceptOrder());
}
ourLog.info("Done working with {} in {}ms", valueSetInfo, sw.getMillis());
ourLog.debug("Done working with {} in {}ms", valueSetInfo, sw.getMillis());
}
private String getValueSetInfo(ValueSet theValueSet) {
@ -553,7 +553,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
return false;
}
ourLog.info("Starting {} expansion around CodeSystem: {}", (theAdd ? "inclusion" : "exclusion"), system);
ourLog.debug("Starting {} expansion around CodeSystem: {}", (theAdd ? "inclusion" : "exclusion"), system);
TermCodeSystem cs = myCodeSystemDao.findByCodeSystemUri(system);
if (cs != null) {
@ -566,7 +566,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
* since we're going to do it without the database.
*/
if (myFulltextSearchSvc == null) {
expandWithoutHibernateSearch(theValueSetCodeAccumulator, theAddedCodes, theIncludeOrExclude, system, theAdd, theCodeCounter);
expandWithoutHibernateSearch(theValueSetCodeAccumulator, csv, theAddedCodes, theIncludeOrExclude, system, theAdd, theCodeCounter);
return false;
}
@ -642,7 +642,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
jpaQuery.setMaxResults(maxResultsPerBatch);
jpaQuery.setFirstResult(theQueryIndex * maxResultsPerBatch);
ourLog.info("Beginning batch expansion for {} with max results per batch: {}", (theAdd ? "inclusion" : "exclusion"), maxResultsPerBatch);
ourLog.debug("Beginning batch expansion for {} with max results per batch: {}", (theAdd ? "inclusion" : "exclusion"), maxResultsPerBatch);
StopWatch swForBatch = new StopWatch();
AtomicInteger countForBatch = new AtomicInteger(0);
@ -661,10 +661,10 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
}
}
ourLog.info("Batch expansion for {} with starting index of {} produced {} results in {}ms", (theAdd ? "inclusion" : "exclusion"), firstResult, countForBatch, swForBatch.getMillis());
ourLog.debug("Batch expansion for {} with starting index of {} produced {} results in {}ms", (theAdd ? "inclusion" : "exclusion"), firstResult, countForBatch, swForBatch.getMillis());
if (resultsInBatch < maxResultsPerBatch) {
ourLog.info("Expansion for {} produced {} results in {}ms", (theAdd ? "inclusion" : "exclusion"), count, sw.getMillis());
ourLog.debug("Expansion for {} produced {} results in {}ms", (theAdd ? "inclusion" : "exclusion"), count, sw.getMillis());
return false;
} else {
return true;
@ -712,7 +712,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
} else if (hasValueSet) {
for (CanonicalType nextValueSet : theIncludeOrExclude.getValueSet()) {
ourLog.info("Starting {} expansion around ValueSet: {}", (theAdd ? "inclusion" : "exclusion"), nextValueSet.getValueAsString());
ourLog.debug("Starting {} expansion around ValueSet: {}", (theAdd ? "inclusion" : "exclusion"), nextValueSet.getValueAsString());
List<VersionIndependentConcept> expanded = expandValueSet(nextValueSet.getValueAsString());
Map<String, TermCodeSystem> uriToCodeSystem = new HashMap<>();
@ -848,7 +848,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
.orElseThrow(() -> new InvalidRequestException("Invalid filter criteria - code does not exist: {" + theSystem + "}" + theFilter.getValue()));
if (theFilter.getOp() == ValueSet.FilterOperator.ISA) {
ourLog.info(" * Filtering on codes with a parent of {}/{}/{}", code.getId(), code.getCode(), code.getDisplay());
ourLog.debug(" * Filtering on codes with a parent of {}/{}/{}", code.getId(), code.getCode(), code.getDisplay());
theBool.must(theQb.keyword().onField("myParentPids").matching("" + code.getId()).createQuery());
} else {
throw new InvalidRequestException("Don't know how to handle op=" + theFilter.getOp() + " on property " + theFilter.getProperty());
@ -1015,7 +1015,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
}
private void logFilteringValueOnProperty(String theValue, String theProperty) {
ourLog.info(" * Filtering with value={} on property {}", theValue, theProperty);
ourLog.debug(" * Filtering with value={} on property {}", theValue, theProperty);
}
private void throwInvalidRequestForOpOnProperty(ValueSet.FilterOperator theOp, String theProperty) {
@ -1060,7 +1060,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
}
}
private void expandWithoutHibernateSearch(IValueSetConceptAccumulator theValueSetCodeAccumulator, Set<String> theAddedCodes, ValueSet.ConceptSetComponent theInclude, String theSystem, boolean theAdd, AtomicInteger theCodeCounter) {
private void expandWithoutHibernateSearch(IValueSetConceptAccumulator theValueSetCodeAccumulator, TermCodeSystemVersion theVersion, Set<String> theAddedCodes, ValueSet.ConceptSetComponent theInclude, String theSystem, boolean theAdd, AtomicInteger theCodeCounter) {
ourLog.trace("Hibernate search is not enabled");
if (theValueSetCodeAccumulator instanceof ValueSetExpansionComponentWithConceptAccumulator) {
Validate.isTrue(((ValueSetExpansionComponentWithConceptAccumulator) theValueSetCodeAccumulator).getParameter().isEmpty(), "Can not expand ValueSet with parameters - Hibernate Search is not enabled on this server.");
@ -1068,12 +1068,21 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
Validate.isTrue(theInclude.getFilter().isEmpty(), "Can not expand ValueSet with filters - Hibernate Search is not enabled on this server.");
Validate.isTrue(isNotBlank(theSystem), "Can not expand ValueSet without explicit system - Hibernate Search is not enabled on this server.");
if (theInclude.getConcept().isEmpty()) {
for (TermConcept next : theVersion.getConcepts()) {
addCodeIfNotAlreadyAdded(theValueSetCodeAccumulator, theAddedCodes, null, theAdd, theCodeCounter, theSystem, next.getCode(), next.getDisplay());
}
}
for (ValueSet.ConceptReferenceComponent next : theInclude.getConcept()) {
if (!theSystem.equals(theInclude.getSystem())) {
continue;
}
addCodeIfNotAlreadyAdded(theValueSetCodeAccumulator, theAddedCodes, null, theAdd, theCodeCounter, theSystem, next.getCode(), next.getDisplay());
}
}
@Override
@ -1215,7 +1224,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
fetchParents(concept.get(), retVal);
ourLog.info("Fetched {} codes above code {} in {}ms", retVal.size(), theCode, stopwatch.getMillis());
ourLog.debug("Fetched {} codes above code {} in {}ms", retVal.size(), theCode, stopwatch.getMillis());
return retVal;
}
@ -1246,7 +1255,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
fetchChildren(concept.get(), retVal);
ourLog.info("Fetched {} codes below code {} in {}ms", retVal.size(), theCode, stopwatch.elapsed(TimeUnit.MILLISECONDS));
ourLog.debug("Fetched {} codes below code {} in {}ms", retVal.size(), theCode, stopwatch.elapsed(TimeUnit.MILLISECONDS));
return retVal;
}
@ -1295,7 +1304,7 @@ public abstract class BaseTermReadSvcImpl implements ITermReadSvc, ApplicationCo
@Override
@Transactional
public void storeTermConceptMapAndChildren(ResourceTable theResourceTable, ConceptMap theConceptMap) {
ourLog.info("Storing TermConceptMap for {}", theConceptMap.getIdElement().toVersionless().getValueAsString());
ourLog.debug("Storing TermConceptMap for {}", theConceptMap.getIdElement().toVersionless().getValueAsString());
ValidateUtil.isTrueOrThrowInvalidRequest(theResourceTable != null, "No resource supplied");
ValidateUtil.isNotBlankOrThrowUnprocessableEntity(theConceptMap.getUrl(), "ConceptMap has no value for ConceptMap.url");

28
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermCodeSystemStorageSvcImpl.java
View File

@ -335,7 +335,7 @@ public class TermCodeSystemStorageSvcImpl implements ITermCodeSystemStorageSvc {
populateCodeSystemVersionProperties(persCs, theCodeSystem, theResourceEntity);
persCs.getConcepts().addAll(BaseTermReadSvcImpl.toPersistedConcepts(theCodeSystem.getConcept(), persCs));
ourLog.info("Code system has {} concepts", persCs.getConcepts().size());
ourLog.debug("Code system has {} concepts", persCs.getConcepts().size());
storeNewCodeSystemVersion(codeSystemResourcePid, codeSystemUrl, theCodeSystem.getName(), theCodeSystem.getVersion(), persCs, theResourceEntity);
}
@ -366,7 +366,7 @@ public class TermCodeSystemStorageSvcImpl implements ITermCodeSystemStorageSvc {
@Override
@Transactional(propagation = Propagation.REQUIRED)
public void storeNewCodeSystemVersion(Long theCodeSystemResourcePid, String theSystemUri, String theSystemName, String theSystemVersionId, TermCodeSystemVersion theCodeSystemVersion, ResourceTable theCodeSystemResourceTable) {
ourLog.info("Storing code system");
ourLog.debug("Storing code system");
ValidateUtil.isTrueOrThrowInvalidRequest(theCodeSystemVersion.getResource() != null, "No resource supplied");
ValidateUtil.isNotBlankOrThrowInvalidRequest(theSystemUri, "No system URI supplied");
@ -378,15 +378,15 @@ public class TermCodeSystemStorageSvcImpl implements ITermCodeSystemStorageSvc {
* For now we always delete old versions. At some point it would be nice to allow configuration to keep old versions.
*/
ourLog.info("Deleting old code system versions");
for (TermCodeSystemVersion next : existing) {
ourLog.info("Deleting old code system version {}", next.getPid());
Long codeSystemVersionPid = next.getPid();
deleteCodeSystemVersion(codeSystemVersionPid);
}
ourLog.info("Flushing...");
ourLog.debug("Flushing...");
myConceptDao.flush();
ourLog.info("Done flushing");
ourLog.debug("Done flushing");
/*
* Do the upload
@ -399,7 +399,7 @@ public class TermCodeSystemStorageSvcImpl implements ITermCodeSystemStorageSvc {
theCodeSystemVersion.setCodeSystemDisplayName(theSystemName);
theCodeSystemVersion.setCodeSystemVersionId(theSystemVersionId);
ourLog.info("Validating all codes in CodeSystem for storage (this can take some time for large sets)");
ourLog.debug("Validating all codes in CodeSystem for storage (this can take some time for large sets)");
// Validate the code system
ArrayList<String> conceptsStack = new ArrayList<>();
@ -409,35 +409,33 @@ public class TermCodeSystemStorageSvcImpl implements ITermCodeSystemStorageSvc {
totalCodeCount += validateConceptForStorage(next, theCodeSystemVersion, conceptsStack, allConcepts);
}
ourLog.info("Saving version containing {} concepts", totalCodeCount);
ourLog.debug("Saving version containing {} concepts", totalCodeCount);
TermCodeSystemVersion codeSystemVersion = myCodeSystemVersionDao.saveAndFlush(theCodeSystemVersion);
ourLog.info("Saving code system");
ourLog.debug("Saving code system");
codeSystem.setCurrentVersion(theCodeSystemVersion);
codeSystem = myCodeSystemDao.saveAndFlush(codeSystem);
ourLog.info("Setting CodeSystemVersion[{}] on {} concepts...", codeSystem.getPid(), totalCodeCount);
ourLog.debug("Setting CodeSystemVersion[{}] on {} concepts...", codeSystem.getPid(), totalCodeCount);
for (TermConcept next : theCodeSystemVersion.getConcepts()) {
populateVersion(next, codeSystemVersion);
}
ourLog.info("Saving {} concepts...", totalCodeCount);
ourLog.debug("Saving {} concepts...", totalCodeCount);
IdentityHashMap<TermConcept, Object> conceptsStack2 = new IdentityHashMap<>();
for (TermConcept next : theCodeSystemVersion.getConcepts()) {
persistChildren(next, codeSystemVersion, conceptsStack2, totalCodeCount);
}
ourLog.info("Done saving concepts, flushing to database");
ourLog.debug("Done saving concepts, flushing to database");
myConceptDao.flush();
myConceptParentChildLinkDao.flush();
ourLog.info("Done deleting old code system versions");
if (myDeferredStorageSvc.isStorageQueueEmpty() == false) {
ourLog.info("Note that some concept saving has been deferred");
}
@ -572,7 +570,7 @@ public class TermCodeSystemStorageSvcImpl implements ITermCodeSystemStorageSvc {
// case for concepts being added to an existing child concept, but won't be the case when
// we're recursively adding children)
for (TermConcept nextParentConcept : parentConcepts) {
if (nextParentConcept.getChildren().stream().noneMatch(t->t.getChild().getCode().equals(nextCodeToAdd))) {
if (nextParentConcept.getChildren().stream().noneMatch(t -> t.getChild().getCode().equals(nextCodeToAdd))) {
TermConceptParentChildLink parentLink = new TermConceptParentChildLink();
parentLink.setParent(nextParentConcept);
parentLink.setChild(nextConceptToAdd);
@ -612,7 +610,7 @@ public class TermCodeSystemStorageSvcImpl implements ITermCodeSystemStorageSvc {
return;
}
if (theConceptsStack.size() == 1 || theConceptsStack.size() % 10000 == 0) {
if ((theConceptsStack.size() + 1) % 10000 == 0) {
float pct = (float) theConceptsStack.size() / (float) theTotalConcepts;
ourLog.info("Have processed {}/{} concepts ({}%)", theConceptsStack.size(), theTotalConcepts, (int) (pct * 100.0f));
}

27
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3ValidateTest.java
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@ -89,6 +89,33 @@ public class FhirResourceDaoDstu3ValidateTest extends BaseJpaDstu3Test {
}
@Test
public void testValidateQuestionnaireResponseWithValueSetIncludingCompleteCodeSystem() throws IOException {
CodeSystem cs = loadResourceFromClasspath(CodeSystem.class, "/dstu3/iar/CodeSystem-iar-citizenship-status.xml");
myCodeSystemDao.create(cs);
ValueSet vs = loadResourceFromClasspath(ValueSet.class, "/dstu3/iar/ValueSet-iar-citizenship-status.xml");
myValueSetDao.create(vs);
ValueSet expansion = myValueSetDao.expandByIdentifier("http://ccim.on.ca/fhir/iar/ValueSet/iar-citizenship-status", null);
ourLog.info(myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(expansion));
// Questionnaire q = loadResourceFromClasspath(Questionnaire.class,"/dstu3/iar/Questionnaire-iar-test.xml" );
// myQuestionnaireDao.create(q);
//
//
//
// Bundle bundleForValidation = loadResourceFromClasspath(Bundle.class, "/dstu3/iar/Bundle-for-validation.xml");
// try {
// MethodOutcome outcome = myBundleDao.validate(bundleForValidation, null, null, null, null, null, null);
// ourLog.info(myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(outcome.getOperationOutcome()));
// } catch (PreconditionFailedException e) {
// ourLog.info(myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(e.getOperationOutcome()));
// }
}
@After
public void after() {
FhirInstanceValidator val = AopTestUtils.getTargetObject(myValidatorModule);

44
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchWithLuceneDisabledTest.java
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@ -4,17 +4,21 @@ import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.bulk.IBulkDataExportSvc;
import ca.uhn.fhir.jpa.config.TestR4WithLuceneDisabledConfig;
import ca.uhn.fhir.jpa.dao.*;
import ca.uhn.fhir.jpa.dao.dstu2.FhirResourceDaoDstu2SearchNoFtTest;
import ca.uhn.fhir.jpa.search.ISearchCoordinatorSvc;
import ca.uhn.fhir.jpa.search.reindex.IResourceReindexingSvc;
import ca.uhn.fhir.jpa.searchparam.registry.ISearchParamRegistry;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import ca.uhn.fhir.jpa.searchparam.registry.ISearchParamRegistry;
import ca.uhn.fhir.jpa.sp.ISearchParamPresenceSvc;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.rest.api.EncodingEnum;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.param.StringParam;
import ca.uhn.fhir.rest.param.TokenParam;
import ca.uhn.fhir.rest.param.TokenParamModifier;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.util.TestUtil;
import org.apache.commons.io.IOUtils;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.hapi.ctx.IValidationSupport;
@ -31,11 +35,13 @@ import org.springframework.transaction.PlatformTransactionManager;
import org.springframework.transaction.annotation.Transactional;
import javax.persistence.EntityManager;
import java.io.IOException;
import java.io.InputStream;
import java.nio.charset.StandardCharsets;
import java.util.List;
import static org.junit.Assert.*;
import static org.mockito.ArgumentMatchers.any;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.fail;
@RunWith(SpringJUnit4ClassRunner.class)
@ContextConfiguration(classes = {TestR4WithLuceneDisabledConfig.class})
@ -71,7 +77,7 @@ public class FhirResourceDaoR4SearchWithLuceneDisabledTest extends BaseJpaTest {
private IFhirResourceDao<CodeSystem> myCodeSystemDao;
@Autowired
@Qualifier("myValueSetDaoR4")
private IFhirResourceDao<ValueSet> myValueSetDao;
private IFhirResourceDaoValueSet<ValueSet, ?, ?> myValueSetDao;
@Autowired
@Qualifier("myObservationDaoR4")
private IFhirResourceDao<Observation> myObservationDao;
@ -219,6 +225,34 @@ public class FhirResourceDaoR4SearchWithLuceneDisabledTest extends BaseJpaTest {
}
protected <T extends IBaseResource> T loadResourceFromClasspath(Class<T> type, String resourceName) throws IOException {
InputStream stream = FhirResourceDaoDstu2SearchNoFtTest.class.getResourceAsStream(resourceName);
if (stream == null) {
fail("Unable to load resource: " + resourceName);
}
String string = IOUtils.toString(stream, StandardCharsets.UTF_8);
IParser newJsonParser = EncodingEnum.detectEncodingNoDefault(string).newParser(myFhirCtx);
return newJsonParser.parseResource(type, string);
}
/**
* A valueset that includes a whole system (i.e. no properties) should expand
*/
@Test
public void testExpandValueSetContainingSystemIncludeWithNoCodes() throws IOException {
CodeSystem cs = loadResourceFromClasspath(CodeSystem.class, "/dstu3/iar/CodeSystem-iar-citizenship-status.xml");
myCodeSystemDao.create(cs);
ValueSet vs = loadResourceFromClasspath(ValueSet.class, "/dstu3/iar/ValueSet-iar-citizenship-status.xml");
myValueSetDao.create(vs);
ValueSet expansion = myValueSetDao.expandByIdentifier("http://ccim.on.ca/fhir/iar/ValueSet/iar-citizenship-status", null);
ourLog.info(myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(expansion));
assertEquals(4, expansion.getExpansion().getContains().size());
}
@AfterClass

2
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ValidateTest.java
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@ -730,6 +730,8 @@ public class FhirResourceDaoR4ValidateTest extends BaseJpaR4Test {
assertEquals("The questionnaire \"Questionnaire/DOES_NOT_EXIST\" could not be resolved, so no validation can be performed against the base questionnaire", oo.getIssueFirstRep().getDiagnostics());
}
private IBaseResource findResourceByIdInBundle(Bundle vss, String name) {
IBaseResource retVal = null;
for (BundleEntryComponent next : vss.getEntry()) {

34
hapi-fhir-jpaserver-base/src/test/resources/dstu3/iar/CodeSystem-iar-citizenship-status.xml Normal file
View File

@ -0,0 +1,34 @@
<?xml version="1.0" encoding="UTF-8"?>
<CodeSystem xmlns="http://hl7.org/fhir">
<id value="iar-citizenship-status"/>
<url value="http://ccim.on.ca/fhir/iar/CodeSystem/iar-citizenship-status"/>
<version value="0.1"/>
<name value="Citizenship Status"/>
<status value="draft"/>
<date value="2019-08-22"/>
<publisher value="CCIM"/>
<contact>
<telecom>
<system value="other"/>
<value value="https://www.ccim.on.ca"/>
</telecom>
</contact>
<compositional value="false"/>
<content value="complete"/>
<concept>
<code value="CDN"/>
<display value="Canadian Citizen"/>
</concept>
<concept>
<code value="PR"/>
<display value="Permanent Resident"/>
</concept>
<concept>
<code value="TR"/>
<display value="Temporary Resident "/>
</concept>
<concept>
<code value="REF"/>
<display value="Refugee"/>
</concept>
</CodeSystem>

36
hapi-fhir-jpaserver-base/src/test/resources/dstu3/iar/ValueSet-iar-citizenship-status.xml Normal file
View File

@ -0,0 +1,36 @@
<?xml version="1.0" encoding="UTF-8"?>
<ValueSet xmlns="http://hl7.org/fhir">
<id value="iar-citizenship-status"/>
<url value="http://ccim.on.ca/fhir/iar/ValueSet/iar-citizenship-status"/>
<version value="0.1"/>
<name value="Citizenship Status"/>
<status value="draft"/>
<date value="2019-08-08"/>
<publisher value="CCIM"/>
<contact>
<telecom>
<system value="other"/>
<value value="https://www.ccim.on.ca"/>
</telecom>
</contact>
<compose>
<include>
<system value="http://ccim.on.ca/fhir/iar/CodeSystem/iar-citizenship-status"/>
<version value="0.1"/>
</include>
<include>
<system value="http://hl7.org/fhir/v3/NullFlavor"/>
<concept>
<code value="UNK"/>
<display value="unknown"/>
</concept>
</include>
<include>
<system value="http://hl7.org/fhir/v3/NullFlavor"/>
<concept>
<code value="ASKU"/>
<display value="asked but unknown"/>
</concept>
</include>
</compose>
</ValueSet>

5
src/changes/changes.xml
View File

@ -480,6 +480,11 @@
JPA servers accidentally stripped the type attribute from the server-exported CapabilityStatement
when search parameters of type "special" were found. This has been corrected.
</action>
<action type="fix">
When running the JPA server without Lucene indexing enabled and performing ValueSet expansion,
the server would incorrectly ignore inclusion rules that specified a system but no codes (i.e.
include the whole system). This has been corrected.
</action>
</release>
<release version="4.0.3" date="2019-09-03" description="Igloo (Point Release)">
<action type="fix">