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This commit is contained in:
jamesagnew 2018-10-01 17:04:50 -04:00
parent 1cfaeadcb8
commit caf7c8b2e1
16 changed files with 42258 additions and 42154 deletions
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159
hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/VersionConvertorConstants.java
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@ -1,69 +1,90 @@
package org.hl7.fhir.convertors;
import org.hl7.fhir.utilities.Utilities;
public class VersionConvertorConstants {
public final static String IG_DEPENDSON_PACKAGE_EXTENSION = "http://hl7.org/fhir/4.0/StructureDefinition/extension-ImplentationGuide.dependency.packageId";
public final static String IG_DEPENDSON_VERSION_EXTENSION = "http://hl7.org/fhir/4.0/StructureDefinition/extension-ImplentationGuide.dependency.version";
public final static String MODIFIER_REASON_EXTENSION = "http://hl7.org/fhir/4.0/StructureDefinition/extension-ElementDefinition.isModifierReason";
public final static String MODIFIER_REASON_LEGACY = "No Modifier Reason provideed in previous versions of FHIR";
public static String refToVS(String url) {
if (url == null)
return null;
if (url.equals("http://www.genenames.org"))
return "http://hl7.org/fhir/ValueSet/genenames";
else if (url.equals("http://varnomen.hgvs.org/"))
return "http://hl7.org/fhir/ValueSet/variants";
else if (url.equals("http://www.ncbi.nlm.nih.gov/nuccore?db=nuccore"))
return "http://hl7.org/fhir/ValueSet/ref-sequences";
else if (url.equals("http://www.ensembl.org/"))
return "http://hl7.org/fhir/ValueSet/ensembl";
else if (url.equals("http://www.ncbi.nlm.nih.gov/clinvar/variation"))
return "http://hl7.org/fhir/ValueSet/clinvar";
else if (url.equals("http://cancer.sanger.ac.uk/cancergenome/projects/cosmic/"))
return "http://hl7.org/fhir/ValueSet/cosmic";
else if (url.equals("http://www.ncbi.nlm.nih.gov/projects/SNP/"))
return "http://hl7.org/fhir/ValueSet/bbsnp";
else if (url.equals("http://www.sequenceontology.org/"))
return "http://hl7.org/fhir/ValueSet/sequenceontology";
else if (url.equals("http://www.ebi.ac.uk/"))
return "http://hl7.org/fhir/ValueSet/allelename";
else if (url.equals("https://www.iso.org/iso-4217-currency-codes.html"))
return "http://hl7.org/fhir/ValueSet/currencies";
else if (url.equals("http://www.rfc-editor.org/bcp/bcp13.txt"))
return "http://hl7.org/fhir/ValueSet/mimetypes";
else
return url;
}
public static String vsToRef(String url) {
if (url == null)
return null;
if (url.equals("http://hl7.org/fhir/ValueSet/genenames"))
return "http://www.genenames.org";
else if (url.equals("http://hl7.org/fhir/ValueSet/variants"))
return "http://varnomen.hgvs.org/";
else if (url.equals("http://hl7.org/fhir/ValueSet/ref-sequences"))
return "http://www.ncbi.nlm.nih.gov/nuccore?db=nuccore";
else if (url.equals("http://hl7.org/fhir/ValueSet/ensembl"))
return "http://www.ensembl.org/";
else if (url.equals("http://hl7.org/fhir/ValueSet/clinvar"))
return "http://www.ncbi.nlm.nih.gov/clinvar/variation";
else if (url.equals("http://hl7.org/fhir/ValueSet/cosmic"))
return "http://cancer.sanger.ac.uk/cancergenome/projects/cosmic/";
else if (url.equals("http://hl7.org/fhir/ValueSet/bbsnp"))
return "http://www.ncbi.nlm.nih.gov/projects/SNP/";
else if (url.equals("http://hl7.org/fhir/ValueSet/sequenceontology"))
return "http://www.sequenceontology.org/";
else if (url.equals("http://hl7.org/fhir/ValueSet/allelename"))
return "http://www.ebi.ac.uk/";
else if (url.equals("http://hl7.org/fhir/ValueSet/currencies"))
return "https://www.iso.org/iso-4217-currency-codes.html";
else if (url.equals("http://hl7.org/fhir/ValueSet/mimetypes"))
return "http://www.rfc-editor.org/bcp/bcp13.txt";
else
return null;
}
}
package org.hl7.fhir.convertors;
/*-
* #%L
* HAPI FHIR - Converter
* %%
* Copyright (C) 2014 - 2018 University Health Network
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import org.hl7.fhir.utilities.Utilities;
public class VersionConvertorConstants {
public final static String IG_DEPENDSON_PACKAGE_EXTENSION = "http://hl7.org/fhir/4.0/StructureDefinition/extension-ImplentationGuide.dependency.packageId";
public final static String IG_DEPENDSON_VERSION_EXTENSION = "http://hl7.org/fhir/4.0/StructureDefinition/extension-ImplentationGuide.dependency.version";
public final static String MODIFIER_REASON_EXTENSION = "http://hl7.org/fhir/4.0/StructureDefinition/extension-ElementDefinition.isModifierReason";
public final static String MODIFIER_REASON_LEGACY = "No Modifier Reason provideed in previous versions of FHIR";
public static String refToVS(String url) {
if (url == null)
return null;
if (url.equals("http://www.genenames.org"))
return "http://hl7.org/fhir/ValueSet/genenames";
else if (url.equals("http://varnomen.hgvs.org/"))
return "http://hl7.org/fhir/ValueSet/variants";
else if (url.equals("http://www.ncbi.nlm.nih.gov/nuccore?db=nuccore"))
return "http://hl7.org/fhir/ValueSet/ref-sequences";
else if (url.equals("http://www.ensembl.org/"))
return "http://hl7.org/fhir/ValueSet/ensembl";
else if (url.equals("http://www.ncbi.nlm.nih.gov/clinvar/variation"))
return "http://hl7.org/fhir/ValueSet/clinvar";
else if (url.equals("http://cancer.sanger.ac.uk/cancergenome/projects/cosmic/"))
return "http://hl7.org/fhir/ValueSet/cosmic";
else if (url.equals("http://www.ncbi.nlm.nih.gov/projects/SNP/"))
return "http://hl7.org/fhir/ValueSet/bbsnp";
else if (url.equals("http://www.sequenceontology.org/"))
return "http://hl7.org/fhir/ValueSet/sequenceontology";
else if (url.equals("http://www.ebi.ac.uk/"))
return "http://hl7.org/fhir/ValueSet/allelename";
else if (url.equals("https://www.iso.org/iso-4217-currency-codes.html"))
return "http://hl7.org/fhir/ValueSet/currencies";
else if (url.equals("http://www.rfc-editor.org/bcp/bcp13.txt"))
return "http://hl7.org/fhir/ValueSet/mimetypes";
else
return url;
}
public static String vsToRef(String url) {
if (url == null)
return null;
if (url.equals("http://hl7.org/fhir/ValueSet/genenames"))
return "http://www.genenames.org";
else if (url.equals("http://hl7.org/fhir/ValueSet/variants"))
return "http://varnomen.hgvs.org/";
else if (url.equals("http://hl7.org/fhir/ValueSet/ref-sequences"))
return "http://www.ncbi.nlm.nih.gov/nuccore?db=nuccore";
else if (url.equals("http://hl7.org/fhir/ValueSet/ensembl"))
return "http://www.ensembl.org/";
else if (url.equals("http://hl7.org/fhir/ValueSet/clinvar"))
return "http://www.ncbi.nlm.nih.gov/clinvar/variation";
else if (url.equals("http://hl7.org/fhir/ValueSet/cosmic"))
return "http://cancer.sanger.ac.uk/cancergenome/projects/cosmic/";
else if (url.equals("http://hl7.org/fhir/ValueSet/bbsnp"))
return "http://www.ncbi.nlm.nih.gov/projects/SNP/";
else if (url.equals("http://hl7.org/fhir/ValueSet/sequenceontology"))
return "http://www.sequenceontology.org/";
else if (url.equals("http://hl7.org/fhir/ValueSet/allelename"))
return "http://www.ebi.ac.uk/";
else if (url.equals("http://hl7.org/fhir/ValueSet/currencies"))
return "https://www.iso.org/iso-4217-currency-codes.html";
else if (url.equals("http://hl7.org/fhir/ValueSet/mimetypes"))
return "http://www.rfc-editor.org/bcp/bcp13.txt";
else
return null;
}
}

24543
hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/VersionConvertor_10_40.java
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15741
hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/VersionConvertor_14_40.java
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43905
hapi-fhir-converter/src/main/java/org/hl7/fhir/convertors/VersionConvertor_30_40.java
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4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/BaseConfig.java
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@ -9,9 +9,9 @@ package ca.uhn.fhir.jpa.config;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchBuilder.java
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@ -9,9 +9,9 @@ package ca.uhn.fhir.jpa.dao;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchParameterMap.java
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@ -31,9 +31,9 @@ import static org.apache.commons.lang3.StringUtils.isNotBlank;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/data/ISearchDao.java
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@ -20,9 +20,9 @@ import java.util.Date;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/data/ISearchResultDao.java
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@ -18,9 +18,9 @@ import org.springframework.data.repository.query.Param;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r4/SearchParamExtractorR4.java
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@ -9,9 +9,9 @@ package ca.uhn.fhir.jpa.dao.r4;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/Search.java
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@ -19,9 +19,9 @@ import static org.apache.commons.lang3.StringUtils.left;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

20
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/SubscriptionRetriggeringProvider.java
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@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.provider;
/*-
* #%L
* HAPI FHIR JPA Server
* %%
* Copyright (C) 2014 - 2018 University Health Network
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.dao.IFhirSystemDao;

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/search/SearchCoordinatorSvcImpl.java
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@ -9,9 +9,9 @@ package ca.uhn.fhir.jpa.search;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/subscription/ResourceModifiedMessage.java
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@ -9,9 +9,9 @@ package ca.uhn.fhir.jpa.subscription;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/ExpungeOptions.java
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@ -9,9 +9,9 @@ package ca.uhn.fhir.jpa.util;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

4
hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/DriverTypeEnum.java
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@ -28,9 +28,9 @@ import java.util.Properties;
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*
* http://www.apache.org/licenses/LICENSE-2.0
*
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.