Incremental work on FhirTerser.getValues(...) enhancements.
This commit is contained in:
Diederik Muylwyk
parent
c8db7fe035
commit
cd6d4302c3
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@ -1,36 +1,5 @@
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package ca.uhn.fhir.util;
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import static org.apache.commons.lang3.StringUtils.defaultString;
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import static org.apache.commons.lang3.StringUtils.isBlank;
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import static org.apache.commons.lang3.StringUtils.isNotBlank;
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/*
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* #%L
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* HAPI FHIR - Core Library
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* %%
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* Copyright (C) 2014 - 2018 University Health Network
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* %%
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* #L%
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*/
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import java.util.*;
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import java.util.function.Predicate;
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import java.util.regex.Matcher;
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import java.util.regex.Pattern;
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import org.apache.commons.lang3.Validate;
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import org.hl7.fhir.instance.model.api.*;
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import ca.uhn.fhir.context.*;
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import ca.uhn.fhir.context.BaseRuntimeElementDefinition.ChildTypeEnum;
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import ca.uhn.fhir.model.api.ExtensionDt;
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@ -40,6 +9,35 @@ import ca.uhn.fhir.model.base.composite.BaseContainedDt;
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import ca.uhn.fhir.model.base.composite.BaseResourceReferenceDt;
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import ca.uhn.fhir.model.primitive.StringDt;
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import ca.uhn.fhir.parser.DataFormatException;
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import org.apache.commons.lang3.Validate;
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import org.hl7.fhir.instance.model.api.*;
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import java.util.*;
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import java.util.regex.Matcher;
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import java.util.regex.Pattern;
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import java.util.stream.Collectors;
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import static org.apache.commons.lang3.StringUtils.*;
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/*
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* #%L
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* HAPI FHIR - Core Library
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* %%
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* Copyright (C) 2014 - 2018 University Health Network
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* %%
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* #L%
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*/
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public class FhirTerser {
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@ -215,8 +213,12 @@ public class FhirTerser {
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return retVal.get(0);
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}
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@SuppressWarnings("unchecked")
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private <T> List<T> getValues(BaseRuntimeElementCompositeDefinition<?> theCurrentDef, Object theCurrentObj, List<String> theSubList, Class<T> theWantedClass) {
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return getValues(theCurrentDef, theCurrentObj, theSubList, theWantedClass, false);
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}
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@SuppressWarnings("unchecked")
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private <T> List<T> getValues(BaseRuntimeElementCompositeDefinition<?> theCurrentDef, Object theCurrentObj, List<String> theSubList, Class<T> theWantedClass, boolean theCreate) {
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String name = theSubList.get(0);
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List<T> retVal = new ArrayList<>();
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@ -227,14 +229,71 @@ public class FhirTerser {
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extensionUrl = extensionUrl.substring(0, endIndex);
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}
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List<ExtensionDt> extensions= Collections.emptyList();
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// DSTU2
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List<ExtensionDt> extensionDts = Collections.emptyList();
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if (theCurrentObj instanceof ISupportsUndeclaredExtensions) {
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extensions = ((ISupportsUndeclaredExtensions) theCurrentObj).getUndeclaredExtensionsByUrl(extensionUrl);
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extensionDts = ((ISupportsUndeclaredExtensions) theCurrentObj).getUndeclaredExtensionsByUrl(extensionUrl);
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if (extensionDts.isEmpty() && theCreate) {
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// FIXME: Add a new extension with extensionUrl and null value.
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// FIXME: Discern between extensions and modifier extensions.
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}
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} else if (theCurrentObj instanceof IBaseExtension) {
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extensions = ((IBaseExtension)theCurrentObj).getExtension();
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extensionDts = ((IBaseExtension) theCurrentObj).getExtension();
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if (extensionDts.isEmpty() && theCreate) {
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// FIXME: Add a new extension with extensionUrl and null value.
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}
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}
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for (ExtensionDt next : extensions) {
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for (ExtensionDt next : extensionDts) {
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if (theWantedClass.isAssignableFrom(next.getClass())) {
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retVal.add((T) next);
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}
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}
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// DSTU3+
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final String extensionUrlForLambda = extensionUrl;
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List<IBaseExtension> extensions = Collections.emptyList();
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if (theCurrentObj instanceof IBaseHasExtensions) {
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extensions = ((IBaseHasExtensions) theCurrentObj).getExtension()
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.stream()
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.filter(t -> t.getUrl().equals(extensionUrlForLambda))
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.distinct()
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.collect(Collectors.toList());
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if (extensions.isEmpty() && theCreate) {
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IBaseExtension extension = ((IBaseHasExtensions) theCurrentObj).addExtension();
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extension.setUrl(extensionUrl);
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extensions.add(extension);
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}
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}
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// List<IBaseExtension> modifierExtensions = Collections.emptyList();
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// if (theCurrentObj instanceof IBaseHasModifierExtensions) {
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// modifierExtensions = ((IBaseHasModifierExtensions) theCurrentObj).getModifierExtension()
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// .stream()
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// .filter(t -> t.getUrl().equals(extensionUrlForLambda))
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// .collect(Collectors.toList());
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//
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// if (modifierExtensions.isEmpty() && theCreate) {
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// IBaseExtension modifierExtension = ((IBaseHasModifierExtensions) theCurrentObj).addModifierExtension();
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// modifierExtension.setUrl(extensionUrl);
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// modifierExtensions.add(modifierExtension);
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// }
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// }
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//
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// List<IBaseExtension> allExtensions = Stream.of(extensions, modifierExtensions)
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// .flatMap(Collection::stream)
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// .distinct()
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// .collect(Collectors.toList());
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//
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// for (IBaseExtension next : allExtensions) {
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// if (theWantedClass.isAssignableFrom(next.getClass())) {
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// retVal.add((T) next);
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// }
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// }
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for (IBaseExtension next : extensions) {
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if (theWantedClass.isAssignableFrom(next.getClass())) {
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retVal.add((T) next);
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}
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@ -256,6 +315,14 @@ public class FhirTerser {
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BaseRuntimeChildDefinition nextDef = theCurrentDef.getChildByNameOrThrowDataFormatException(name);
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List<? extends IBase> values = nextDef.getAccessor().getValues(theCurrentObj);
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if (values.isEmpty() && theCreate) {
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IBase value = nextDef.getChildByName(name).newInstance();
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nextDef.getMutator().addValue(theCurrentObj, value);
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List<IBase> list = new ArrayList<>();
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list.add(value);
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values = list;
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}
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if (theSubList.size() == 1) {
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if (nextDef instanceof RuntimeChildChoiceDefinition) {
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for (IBase next : values) {
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@ -297,7 +364,12 @@ public class FhirTerser {
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Class<Object> wantedClass = Object.class;
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return getValues(theResource, thePath, wantedClass);
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}
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public List<Object> getValues(IBaseResource theResource, String thePath, boolean theCreate) {
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Class<Object> wantedClass = Object.class;
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return getValues(theResource, thePath, wantedClass, theCreate);
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}
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public <T> List<T> getValues(IBaseResource theResource, String thePath, Class<T> theWantedClass) {
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@ -306,6 +378,12 @@ public class FhirTerser {
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return getValues(def, theResource, parts, theWantedClass);
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}
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public <T> List<T> getValues(IBaseResource theResource, String thePath, Class<T> theWantedClass, boolean theCreate) {
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RuntimeResourceDefinition def = myContext.getResourceDefinition(theResource);
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List<String> parts = parsePath(def, thePath);
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return getValues(def, theResource, parts, theWantedClass, theCreate);
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}
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private List<String> parsePath(BaseRuntimeElementCompositeDefinition<?> theElementDef, String thePath) {
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List<String> parts = new ArrayList<>();
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@ -1,41 +1,27 @@
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package ca.uhn.fhir.util;
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import static org.hamcrest.Matchers.containsInAnyOrder;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertSame;
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import static org.junit.Assert.assertThat;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import static org.mockito.Mockito.mock;
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import static org.mockito.Mockito.when;
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import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
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import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.parser.DataFormatException;
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import org.hl7.fhir.dstu3.model.*;
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import org.hl7.fhir.dstu3.model.Patient.LinkType;
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import org.hl7.fhir.instance.model.api.IBase;
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import org.hl7.fhir.instance.model.api.IBaseExtension;
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import org.hl7.fhir.instance.model.api.IBaseReference;
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import org.junit.AfterClass;
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import org.junit.Test;
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import org.mockito.ArgumentCaptor;
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import java.lang.reflect.ParameterizedType;
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import java.lang.reflect.Type;
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import java.util.ArrayList;
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import java.util.List;
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import org.hl7.fhir.dstu3.model.Bundle;
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import org.hl7.fhir.dstu3.model.Extension;
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import org.hl7.fhir.dstu3.model.Identifier;
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import org.hl7.fhir.dstu3.model.MarkdownType;
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import org.hl7.fhir.dstu3.model.Money;
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import org.hl7.fhir.dstu3.model.Observation;
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import org.hl7.fhir.dstu3.model.Organization;
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import org.hl7.fhir.dstu3.model.Patient;
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import org.hl7.fhir.dstu3.model.Patient.LinkType;
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import org.hl7.fhir.dstu3.model.Quantity;
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import org.hl7.fhir.dstu3.model.Reference;
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import org.hl7.fhir.dstu3.model.StringType;
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import org.hl7.fhir.instance.model.api.IBase;
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import org.hl7.fhir.instance.model.api.IBaseReference;
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import org.junit.AfterClass;
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import org.junit.Test;
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import org.mockito.ArgumentCaptor;
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import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
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import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.parser.DataFormatException;
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import static org.hamcrest.Matchers.containsInAnyOrder;
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import static org.junit.Assert.*;
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import static org.mockito.Mockito.mock;
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import static org.mockito.Mockito.when;
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public class FhirTerserDstu3Test {
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@ -183,6 +169,224 @@ public class FhirTerserDstu3Test {
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assertSame(ref, refs.get(0));
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}
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@Test
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public void testGetValues() {
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Patient p = new Patient();
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p.setActive(true);
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p.addExtension()
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.setUrl("http://acme.org/extension")
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.setValue(new StringType("value"));
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p.addExtension()
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.setUrl("http://acme.org/otherExtension")
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.setValue(new StringType("otherValue"));
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// p.addModifierExtension()
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// .setUrl("http://acme.org/extension")
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// .setValue(new StringType("modifierValue"));
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System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
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List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active");
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assertEquals(1, values.size());
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assertTrue(values.get(0) instanceof PrimitiveType);
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assertTrue(values.get(0) instanceof BooleanType);
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assertTrue(((BooleanType) values.get(0)).booleanValue());
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values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
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assertEquals(1, values.size());
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assertTrue(values.get(0) instanceof IBaseExtension);
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assertTrue(values.get(0) instanceof Extension);
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assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
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assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
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// values = ourCtx.newTerser().getValues(p, "Patient.modifierExtension('http://acme.org/extension')");
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// assertEquals(1, values.size());
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// assertTrue(values.get(0) instanceof IBaseExtension);
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// assertTrue(values.get(0) instanceof Extension);
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// assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
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// assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
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}
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@Test
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public void testGetValuesAndModify() {
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Patient p = new Patient();
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p.setActive(true);
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p.addExtension()
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.setUrl("http://acme.org/extension")
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.setValue(new StringType("value"));
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p.addExtension()
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.setUrl("http://acme.org/otherExtension")
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.setValue(new StringType("otherValue"));
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System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
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List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active");
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assertEquals(1, values.size());
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assertTrue(values.get(0) instanceof PrimitiveType);
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assertTrue(values.get(0) instanceof BooleanType);
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assertTrue(((BooleanType) values.get(0)).booleanValue());
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((BooleanType) values.get(0)).setValue(Boolean.FALSE);
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System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
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values = ourCtx.newTerser().getValues(p, "Patient.active");
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assertEquals(1, values.size());
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assertTrue(values.get(0) instanceof PrimitiveType);
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assertTrue(values.get(0) instanceof BooleanType);
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assertFalse(((BooleanType) values.get(0)).booleanValue());
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values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
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assertEquals(1, values.size());
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assertTrue(values.get(0) instanceof IBaseExtension);
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assertTrue(values.get(0) instanceof Extension);
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assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
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assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
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((Extension) values.get(0)).setValue(new StringType("modifiedValue"));
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System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
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values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
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assertEquals(1, values.size());
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assertTrue(values.get(0) instanceof IBaseExtension);
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assertTrue(values.get(0) instanceof Extension);
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assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
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assertEquals("modifiedValue", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
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}
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@Test
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public void testGetValuesWithWantedClass() {
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Patient p = new Patient();
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p.setActive(true);
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p.addExtension()
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.setUrl("http://acme.org/extension")
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.setValue(new StringType("value"));
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p.addExtension()
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.setUrl("http://acme.org/otherExtension")
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.setValue(new StringType("otherValue"));
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System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
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List<PrimitiveType> values = ourCtx.newTerser().getValues(p, "Patient.active", PrimitiveType.class);
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assertEquals(1, values.size());
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assertTrue(values.get(0) instanceof BooleanType);
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assertTrue(((BooleanType) values.get(0)).booleanValue());
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List<Extension> extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", Extension.class);
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assertEquals(1, extValues.size());
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assertTrue(extValues.get(0).getValue() instanceof StringType);
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assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
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assertEquals("value", ((StringType) (extValues.get(0).getValue())).getValueAsString());
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}
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@Test
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public void testGetValuesWithWantedClassAndModify() {
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Patient p = new Patient();
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p.setActive(true);
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p.addExtension()
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.setUrl("http://acme.org/extension")
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.setValue(new StringType("value"));
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p.addExtension()
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.setUrl("http://acme.org/otherExtension")
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.setValue(new StringType("otherValue"));
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System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
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List<PrimitiveType> values = ourCtx.newTerser().getValues(p, "Patient.active", PrimitiveType.class);
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assertEquals(1, values.size());
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assertTrue(values.get(0) instanceof BooleanType);
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assertTrue(((BooleanType) values.get(0)).booleanValue());
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((BooleanType) values.get(0)).setValue(Boolean.FALSE);
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System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
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values = ourCtx.newTerser().getValues(p, "Patient.active", PrimitiveType.class);
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assertEquals(1, values.size());
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assertTrue(values.get(0) instanceof BooleanType);
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assertFalse(((BooleanType) values.get(0)).booleanValue());
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List<Extension> extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", Extension.class);
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assertEquals(1, extValues.size());
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assertTrue(extValues.get(0).getValue() instanceof StringType);
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assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
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assertEquals("value", ((StringType) (extValues.get(0).getValue())).getValueAsString());
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extValues.get(0).setValue(new StringType("modifiedValue"));
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||||
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
|
||||
|
||||
extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", Extension.class);
|
||||
assertEquals(1, extValues.size());
|
||||
assertTrue(extValues.get(0).getValue() instanceof StringType);
|
||||
assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
|
||||
assertEquals("modifiedValue", ((StringType) (extValues.get(0).getValue())).getValueAsString());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testGetValuesWithWantedClassAndTheCreate() {
|
||||
Patient p = new Patient();
|
||||
|
||||
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
|
||||
|
||||
List<PrimitiveType> values = ourCtx.newTerser().getValues(p, "Patient.active", PrimitiveType.class, true);
|
||||
assertEquals(1, values.size());
|
||||
assertTrue(values.get(0) instanceof BooleanType);
|
||||
assertNull(((BooleanType) values.get(0)).getValue());
|
||||
|
||||
List<Extension> extValues = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", Extension.class, true);
|
||||
assertEquals(1, extValues.size());
|
||||
assertEquals("http://acme.org/extension", extValues.get(0).getUrl());
|
||||
assertNull(extValues.get(0).getValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testGetValuesWithTheCreate() {
|
||||
Patient p = new Patient();
|
||||
|
||||
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
|
||||
|
||||
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active", true);
|
||||
assertEquals(1, values.size());
|
||||
assertTrue(values.get(0) instanceof PrimitiveType);
|
||||
assertTrue(values.get(0) instanceof BooleanType);
|
||||
assertNull(((BooleanType) values.get(0)).getValue());
|
||||
|
||||
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')", true);
|
||||
assertEquals(1, values.size());
|
||||
assertTrue(values.get(0) instanceof IBaseExtension);
|
||||
assertTrue(values.get(0) instanceof Extension);
|
||||
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
|
||||
assertNull(((Extension) values.get(0)).getValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testGetValuesWithTheCreateAndNoOverwrite() {
|
||||
Patient p = new Patient();
|
||||
p.setActive(true);
|
||||
p.addExtension()
|
||||
.setUrl("http://acme.org/extension")
|
||||
.setValue(new StringType("value"));
|
||||
p.addExtension()
|
||||
.setUrl("http://acme.org/otherExtension")
|
||||
.setValue(new StringType("otherValue"));
|
||||
|
||||
System.out.println(ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p));
|
||||
|
||||
List<Object> values = ourCtx.newTerser().getValues(p, "Patient.active", true);
|
||||
assertEquals(1, values.size());
|
||||
assertTrue(values.get(0) instanceof PrimitiveType);
|
||||
assertTrue(values.get(0) instanceof BooleanType);
|
||||
assertTrue(((BooleanType) values.get(0)).booleanValue());
|
||||
|
||||
values = ourCtx.newTerser().getValues(p, "Patient.extension('http://acme.org/extension')");
|
||||
assertEquals(1, values.size());
|
||||
assertTrue(values.get(0) instanceof IBaseExtension);
|
||||
assertTrue(values.get(0) instanceof Extension);
|
||||
assertEquals("http://acme.org/extension", ((Extension) values.get(0)).getUrl());
|
||||
assertEquals("value", ((StringType) ((Extension) values.get(0)).getValue()).getValueAsString());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testVisitWithModelVisitor2() {
|
||||
IModelVisitor2 visitor = mock(IModelVisitor2.class);
|
||||
|
|
|
|||
Loading…
Reference in New Issue