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hapi-fhir
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Bump to 0.7-SNAPSHOT

This commit is contained in:
James Agnew 2014-09-11 16:57:45 -04:00
parent 0b6c985f3a
commit cdd4b137fb
22 changed files with 316 additions and 41 deletions
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4
hapi-fhir-base/examples/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../../pom.xml</relativePath>
</parent>
@ -17,7 +17,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>

2
hapi-fhir-base/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

5
hapi-fhir-base/src/changes/changes.xml
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@ -6,6 +6,11 @@
<title>HAPI FHIR Changelog</title>
</properties>
<body>
<release version="0.7" date="TBD">
<action type="add">
Documentation update, thanks to Suranga Nath Kasthurirathne of the OpenMRS project.
</action>
</release>
<release version="0.6" date="TBD">
<!--
<action type="add">

10
hapi-fhir-base/src/test/java/ca/uhn/fhir/rest/client/InterceptorTest.java
View File

@ -56,12 +56,12 @@ public class InterceptorTest {
Patient patient = client.read(Patient.class, "1");
assertFalse(patient.getIdentifierFirstRep().isEmpty());
int times = 1;
if (LoggerFactory.getLogger(ResourceBinding.class).isDebugEnabled()) {
times = 3;
}
// int times = 1;
// if (LoggerFactory.getLogger(ResourceBinding.class).isDebugEnabled()) {
// times = 3;
// }
verify(mockAppender, times(times)).doAppend(argThat(new ArgumentMatcher<ILoggingEvent>() {
verify(mockAppender).doAppend(argThat(new ArgumentMatcher<ILoggingEvent>() {
@Override
public boolean matches(final Object argument) {
return ((LoggingEvent) argument).getFormattedMessage().contains("Content-Type: application/xml+fhir; charset=UTF-8");

4
hapi-fhir-jpaserver-base/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
@ -44,7 +44,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>

6
hapi-fhir-jpaserver-test/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
@ -17,7 +17,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-base</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.thymeleaf</groupId>
@ -127,7 +127,7 @@
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<executions>
<execution>
<id>buildclient</id>

6
hapi-fhir-jpaserver-uhnfhirtest/.settings/org.eclipse.wst.common.component
View File

@ -6,13 +6,13 @@
<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/resources"/>
<wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
<wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
<dependent-module archiveName="hapi-fhir-jpaserver-base-0.6.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-jpaserver-base/hapi-fhir-jpaserver-base">
<dependent-module archiveName="hapi-fhir-jpaserver-base-0.7-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-jpaserver-base/hapi-fhir-jpaserver-base">
<dependency-type>uses</dependency-type>
</dependent-module>
<dependent-module archiveName="hapi-fhir-base-0.6.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-base/hapi-fhir-base">
<dependent-module archiveName="hapi-fhir-base-0.7-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-base/hapi-fhir-base">
<dependency-type>uses</dependency-type>
</dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/var/M2_REPO/ca/uhn/hapi/fhir/hapi-fhir-testpage-overlay/0.6/hapi-fhir-testpage-overlay-0.6.war?unpackFolder=target/m2e-wtp/overlays&amp;includes=**/**&amp;excludes=META-INF/MANIFEST.MF">
<dependent-module deploy-path="/" handle="module:/overlay/var/M2_REPO/ca/uhn/hapi/fhir/hapi-fhir-testpage-overlay/0.7-SNAPSHOT/hapi-fhir-testpage-overlay-0.7-SNAPSHOT.war?unpackFolder=target/m2e-wtp/overlays&amp;includes=**/**&amp;excludes=META-INF/MANIFEST.MF">
<dependency-type>consumes</dependency-type>
</dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/slf/?includes=**/**&amp;excludes=META-INF/MANIFEST.MF">

10
hapi-fhir-jpaserver-uhnfhirtest/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
@ -16,12 +16,12 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-base</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-testpage-overlay</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<type>war</type>
<scope>provided</scope>
</dependency>
@ -29,7 +29,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-test</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<scope>test</scope>
</dependency>
@ -191,7 +191,7 @@
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<executions>
<execution>
<id>buildclient</id>

2
hapi-fhir-oauth2/.gitignore~HEAD Normal file
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@ -0,0 +1,2 @@
target/
bin/

2
hapi-fhir-oauth2/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6-SNAPSHOT</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

151
hapi-fhir-oauth2/pom.xml.versionsBackup Normal file
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@ -0,0 +1,151 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
<artifactId>hapi-fhir-oauth2</artifactId>
<packaging>jar</packaging>
<name>HAPI FHIR - OAUTH2 Support</name>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6-SNAPSHOT</version>
</dependency>
<!-- Only required for OpenID Connect Support -->
<dependency>
<groupId>org.mitre</groupId>
<artifactId>openid-connect-client</artifactId>
<version>${mitreid-connect-version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security.oauth</groupId>
<artifactId>spring-security-oauth2</artifactId>
<version>2.0.2.RELEASE</version>
</dependency>
<!-- Server -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>${servlet_api_version}</version>
<scope>provided</scope>
</dependency>
<!-- Testing -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>${logback_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>xmlunit</groupId>
<artifactId>xmlunit</artifactId>
<version>1.5</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlets</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-webapp</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<!-- UNIT TEST DEPENDENCIES -->
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<version>${mockito_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>hamcrest-all</artifactId>
<version>${hamcrest_version}</version>
<scope>test</scope>
</dependency>
<!--
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-web</artifactId>
<version>${spring_security_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-config</artifactId>
<version>${spring_security_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-jwt</artifactId>
<version>1.0.2.RELEASE</version>
<scope>test</scope>
</dependency>
-->
</dependencies>
<build>
<pluginManagement>
<plugins>
</plugins>
</pluginManagement>
<plugins>
</plugins>
<resources>
<resource>
<directory>src/main/resources</directory>
<filtering>true</filtering>
</resource>
</resources>
</build>
</project>

1
hapi-fhir-oauth2/src/test/java/ca/uhn/fhir/rest/server/security/OpenIdConnectBearerTokenServerInterceptorIntegrationTest.java
View File

@ -29,7 +29,6 @@ import ca.uhn.fhir.model.dstu.resource.Observation;
import ca.uhn.fhir.rest.annotation.Search;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.RestfulServer;
import ca.uhn.fhir.util.PortUtil;
/**
* Created by dsotnikov on 2/25/2014.

39
hapi-fhir-oauth2/src/test/java/ca/uhn/fhir/rest/server/security/PortUtil.java Normal file
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@ -0,0 +1,39 @@
package ca.uhn.fhir.rest.server.security;
import java.io.IOException;
import java.net.ServerSocket;
import java.util.ArrayList;
import java.util.List;
/**
* Provides server ports
*/
public class PortUtil {
private static List<Integer> ourPorts = new ArrayList<Integer>();
/**
* This is really only used for unit tests but is included in the library so it can be reused across modules. Use with caution.
*/
public static int findFreePort() {
ServerSocket server;
try {
server = new ServerSocket(0);
int port = server.getLocalPort();
ourPorts.add(port);
server.close();
Thread.sleep(500);
return port;
} catch (IOException e) {
throw new Error(e);
} catch (InterruptedException e) {
throw new Error(e);
}
}
public static List<Integer> list() {
return ourPorts;
}
}

6
hapi-fhir-structures-dstu/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
@ -18,7 +18,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
</dependency>
</dependencies>
@ -27,7 +27,7 @@
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<executions>
<execution>
<goals>

6
hapi-fhir-testpage-overlay/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
@ -27,7 +27,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.thymeleaf</groupId>
@ -50,7 +50,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-test</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<scope>test</scope>
</dependency>

4
hapi-tinder-plugin/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
@ -19,7 +19,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
</dependency>
<dependency>

6
hapi-tinder-test/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
@ -17,7 +17,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
</dependency>
<dependency>
@ -40,7 +40,7 @@
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<executions>
<execution>
<id>custom-structs</id>

2
pom.xml
View File

@ -12,7 +12,7 @@
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<packaging>pom</packaging>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<name>HAPI-FHIR</name>
<url>http://hl7api.sourceforge.net/hapi-fhir/</url>

4
restful-server-example-test/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6-SNAPSHOT</version>
<version>0.7-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
@ -17,7 +17,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6-SNAPSHOT</version>
<version>0.7-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>

79
restful-server-example-test/pom.xml.versionsBackup Normal file
View File

@ -0,0 +1,79 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
<artifactId>restful-server-example-test</artifactId>
<packaging>jar</packaging>
<name>HAPI FHIR Sample RESTful Server - Tests</name>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>${logback_version}</version>
<optional>true</optional>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlets</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-webapp</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
</plugins>
</build>
</project>

2
restful-server-example/.settings/org.eclipse.wst.common.component
View File

@ -3,7 +3,7 @@
<wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
<wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
<dependent-module archiveName="hapi-fhir-base-0.6.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-base/hapi-fhir-base">
<dependent-module archiveName="hapi-fhir-base-0.7-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-base/hapi-fhir-base">
<dependency-type>uses</dependency-type>
</dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/var/M2_REPO/ca/uhn/hapi/fhir/hapi-fhir-testpage-overlay/0.6/hapi-fhir-testpage-overlay-0.6.war?unpackFolder=target/m2e-wtp/overlays&amp;includes=**/**&amp;excludes=META-INF/MANIFEST.MF">

6
restful-server-example/pom.xml
View File

@ -13,7 +13,7 @@
<groupId>ca.uhn.hapi.example</groupId>
<artifactId>restful-server-example</artifactId>
<version>0.6</version>
<version>0.7</version>
<packaging>war</packaging>
<name>HAPI FHIR Sample RESTful Server</name>
@ -34,14 +34,14 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
</dependency>
<!-- This dependency is used for the "FHIR Tester" web app overlay -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-testpage-overlay</artifactId>
<version>0.6</version>
<version>0.7-SNAPSHOT</version>
<type>war</type>
<scope>provided</scope>
</dependency>