Fix validation
This commit is contained in:
James Agnew
parent
589059256f
commit
d290110126
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@ -23,6 +23,7 @@ package ca.uhn.fhir.rest.method;
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import java.lang.reflect.Method;
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import java.lang.reflect.Modifier;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Collection;
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import java.util.List;
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import java.util.Map;
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@ -82,8 +83,6 @@ public class OperationParameter implements IParameter {
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myContext = theCtx;
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}
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protected FhirContext getContext() {
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return myContext;
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}
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@ -109,22 +108,22 @@ public class OperationParameter implements IParameter {
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public void initializeTypes(Method theMethod, Class<? extends Collection<?>> theOuterCollectionType, Class<? extends Collection<?>> theInnerCollectionType, Class<?> theParameterType) {
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if (getContext().getVersion().getVersion().isRi()) {
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if (IDatatype.class.isAssignableFrom(theParameterType)) {
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throw new ConfigurationException("Incorrect use of type " + theParameterType.getSimpleName() + " as parameter type for method when context is for version " + getContext().getVersion().getVersion().name() + " in method: " + theMethod.toString());
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throw new ConfigurationException("Incorrect use of type " + theParameterType.getSimpleName() + " as parameter type for method when context is for version "
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+ getContext().getVersion().getVersion().name() + " in method: " + theMethod.toString());
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}
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}
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myParameterType = theParameterType;
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if (theInnerCollectionType != null) {
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myInnerCollectionType = CollectionBinder.getInstantiableCollectionType(theInnerCollectionType, myName);
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} else {
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myMax = 1;
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}
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myAllowGet = IPrimitiveType.class.isAssignableFrom(myParameterType) || String.class.equals(myParameterType);
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/*
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* The parameter can be of type string for validation methods - This is a bit
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* weird. See ValidateDstu2Test. We should probably clean this up..
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* The parameter can be of type string for validation methods - This is a bit weird. See ValidateDstu2Test. We should probably clean this up..
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*/
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if (!myParameterType.equals(IBase.class) && !myParameterType.equals(String.class)) {
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if (IBaseResource.class.isAssignableFrom(myParameterType) && myParameterType.isInterface()) {
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@ -150,7 +149,8 @@ public class OperationParameter implements IParameter {
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}
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@Override
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public void translateClientArgumentIntoQueryArgument(FhirContext theContext, Object theSourceClientArgument, Map<String, List<String>> theTargetQueryArguments, IBaseResource theTargetResource) throws InternalErrorException {
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public void translateClientArgumentIntoQueryArgument(FhirContext theContext, Object theSourceClientArgument, Map<String, List<String>> theTargetQueryArguments, IBaseResource theTargetResource)
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throws InternalErrorException {
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assert theTargetResource != null;
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Object sourceClientArgument = theSourceClientArgument;
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if (sourceClientArgument == null) {
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@ -173,7 +173,7 @@ public class OperationParameter implements IParameter {
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String[] paramValues = theRequest.getParameters().get(myName);
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if (paramValues != null && paramValues.length > 0) {
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if (myAllowGet) {
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if (DateRangeParam.class.isAssignableFrom(myParameterType)) {
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List<QualifiedParamList> parameters = new ArrayList<QualifiedParamList>();
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parameters.add(QualifiedParamList.singleton(paramValues[0]));
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@ -184,11 +184,11 @@ public class OperationParameter implements IParameter {
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dateRangeParam.setValuesAsQueryTokens(parameters);
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matchingParamValues.add(dateRangeParam);
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} else if (String.class.isAssignableFrom(myParameterType)) {
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for (String next : paramValues) {
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matchingParamValues.add(next);
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}
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} else {
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for (String nextValue : paramValues) {
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FhirContext ctx = theRequest.getServer().getFhirContext();
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@ -212,42 +212,51 @@ public class OperationParameter implements IParameter {
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return null;
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}
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Class<? extends IBaseResource> wantedResourceType = theMethodBinding.getContext().getResourceDefinition("Parameters").getImplementingClass();
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// Class<? extends IBaseResource> wantedResourceType = theMethodBinding.getContext().getResourceDefinition("Parameters").getImplementingClass();
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Class<IBaseResource> wantedResourceType = null;
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IBaseResource requestContents = ResourceParameter.loadResourceFromRequest(theRequest, theMethodBinding, wantedResourceType);
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RuntimeResourceDefinition def = ctx.getResourceDefinition(requestContents);
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if (def.getName().equals("Parameters")) {
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BaseRuntimeChildDefinition paramChild = def.getChildByName("parameter");
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BaseRuntimeElementCompositeDefinition<?> paramChildElem = (BaseRuntimeElementCompositeDefinition<?>) paramChild.getChildByName("parameter");
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BaseRuntimeChildDefinition paramChild = def.getChildByName("parameter");
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BaseRuntimeElementCompositeDefinition<?> paramChildElem = (BaseRuntimeElementCompositeDefinition<?>) paramChild.getChildByName("parameter");
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RuntimeChildPrimitiveDatatypeDefinition nameChild = (RuntimeChildPrimitiveDatatypeDefinition) paramChildElem.getChildByName("name");
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BaseRuntimeChildDefinition valueChild = paramChildElem.getChildByName("value[x]");
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BaseRuntimeChildDefinition resourceChild = paramChildElem.getChildByName("resource");
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RuntimeChildPrimitiveDatatypeDefinition nameChild = (RuntimeChildPrimitiveDatatypeDefinition) paramChildElem.getChildByName("name");
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BaseRuntimeChildDefinition valueChild = paramChildElem.getChildByName("value[x]");
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BaseRuntimeChildDefinition resourceChild = paramChildElem.getChildByName("resource");
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IAccessor paramChildAccessor = paramChild.getAccessor();
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List<IBase> values = paramChildAccessor.getValues(requestContents);
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for (IBase nextParameter : values) {
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List<IBase> nextNames = nameChild.getAccessor().getValues(nextParameter);
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if (nextNames != null && nextNames.size() > 0) {
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IPrimitiveType<?> nextName = (IPrimitiveType<?>) nextNames.get(0);
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if (myName.equals(nextName.getValueAsString())) {
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IAccessor paramChildAccessor = paramChild.getAccessor();
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List<IBase> values = paramChildAccessor.getValues(requestContents);
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for (IBase nextParameter : values) {
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List<IBase> nextNames = nameChild.getAccessor().getValues(nextParameter);
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if (nextNames != null && nextNames.size() > 0) {
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IPrimitiveType<?> nextName = (IPrimitiveType<?>) nextNames.get(0);
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if (myName.equals(nextName.getValueAsString())) {
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if (myParameterType.isAssignableFrom(nextParameter.getClass())) {
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matchingParamValues.add(nextParameter);
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} else {
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List<IBase> paramValues = valueChild.getAccessor().getValues(nextParameter);
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List<IBase> paramResources = resourceChild.getAccessor().getValues(nextParameter);
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if (paramValues != null && paramValues.size() > 0) {
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tryToAddValues(paramValues, matchingParamValues);
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} else if (paramResources != null && paramResources.size() > 0) {
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tryToAddValues(paramResources, matchingParamValues);
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if (myParameterType.isAssignableFrom(nextParameter.getClass())) {
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matchingParamValues.add(nextParameter);
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} else {
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List<IBase> paramValues = valueChild.getAccessor().getValues(nextParameter);
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List<IBase> paramResources = resourceChild.getAccessor().getValues(nextParameter);
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if (paramValues != null && paramValues.size() > 0) {
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tryToAddValues(paramValues, matchingParamValues);
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} else if (paramResources != null && paramResources.size() > 0) {
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tryToAddValues(paramResources, matchingParamValues);
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}
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}
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}
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}
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}
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}
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}
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} else {
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if (myParameterType.isAssignableFrom(requestContents.getClass())) {
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tryToAddValues(Arrays.asList((IBase) requestContents), matchingParamValues);
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}
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}
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}
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if (matchingParamValues.isEmpty()) {
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@ -111,6 +111,11 @@ public class ValidationResult {
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OperationOutcomeUtil.addIssue(myCtx, oo, severity, next.getMessage(), location, ExceptionHandlingInterceptor.PROCESSING);
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}
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if (myMessages.isEmpty()) {
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String message = myCtx.getLocalizer().getMessage(ValidationResult.class, "noIssuesDetected");
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OperationOutcomeUtil.addIssue(myCtx, oo, "information", message, null, "informational");
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}
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return oo;
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}
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@ -38,6 +38,7 @@ ca.uhn.fhir.rest.server.RestfulServer.rootRequest=This is the base URL of FHIR s
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ca.uhn.fhir.validation.ValidationContext.unableToDetermineEncoding=Unable to determine encoding (e.g. XML / JSON) on validation input. Is this a valid FHIR resource body?
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ca.uhn.fhir.validation.FhirValidator.noPhlocWarningOnStartup=Phloc-schematron library not found on classpath, will not attempt to perform schematron validation
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ca.uhn.fhir.validation.FhirValidator.noPhlocError=Phloc-schematron library not found on classpath, can not enable perform schematron validation
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ca.uhn.fhir.validation.ValidationResult.noIssuesDetected=No issues detected during validation
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# JPA Messages
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@ -1,5 +1,7 @@
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package ca.uhn.fhir.jpa.provider;
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import org.hl7.fhir.dstu21.model.QuestionnaireResponse;
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/*
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* #%L
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* HAPI FHIR JPA Server
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@ -20,9 +22,7 @@ package ca.uhn.fhir.jpa.provider;
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* #L%
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*/
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import ca.uhn.fhir.model.dstu2.resource.QuestionnaireResponse;
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public class BaseJpaResourceProviderQuestionnaireResponseDstu21 extends JpaResourceProviderDstu2<QuestionnaireResponse> {
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public class BaseJpaResourceProviderQuestionnaireResponseDstu21 extends JpaResourceProviderDstu21<QuestionnaireResponse> {
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// nothing yet
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@ -0,0 +1,56 @@
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package ca.uhn.fhir.jpa.config;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.model.dstu2.resource.Bundle;
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import ca.uhn.fhir.model.dstu2.resource.Organization;
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import ca.uhn.fhir.model.dstu2.resource.Patient;
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import ca.uhn.fhir.model.dstu2.valueset.BundleTypeEnum;
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import ca.uhn.fhir.model.dstu2.valueset.HTTPVerbEnum;
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import ca.uhn.fhir.model.primitive.IdDt;
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import ca.uhn.fhir.rest.client.IGenericClient;
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import ca.uhn.fhir.rest.client.ServerValidationModeEnum;
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public class Tmp {
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public static void main(String[] args) {
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FhirContext ctx = FhirContext.forDstu2();
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ctx.getRestfulClientFactory().setSocketTimeout(200000);
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ctx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
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IGenericClient client = ctx.newRestfulGenericClient("http://localhost:8080/hapi-fhir-jpaserver-example/baseDstu2");
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Bundle b = new Bundle();
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b.setType(BundleTypeEnum.TRANSACTION);
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int resCount = 20;
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for (int i = 0; i < (resCount / 2); i++) {
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Organization org = new Organization();
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org.setId(IdDt.newRandomUuid());
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org.setName("Random Org " + i);
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org.addAddress().addLine("Random Org Line 1");
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org.addIdentifier().setSystem("urn:foo").setValue("some_system" + i);
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b.addEntry().setResource(org).getRequest().setMethod(HTTPVerbEnum.POST).setUrl("Organization");
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Patient patient = new Patient();
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patient.setId(IdDt.newRandomUuid());
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patient.addName().addFamily("Family" + i).addGiven("Gigven " + i);
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patient.addAddress().addLine("Random Patient Line 1");
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patient.addIdentifier().setSystem("urn:bar").setValue("some_system" + i);
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b.addEntry().setResource(patient).getRequest().setMethod(HTTPVerbEnum.POST).setUrl("Patient");
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}
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int total = 0;
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long start = System.currentTimeMillis();
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for (int i = 0; i < 300; i++) {
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client.transaction().withBundle(b).execute();
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ourLog.info("" + i);
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total += resCount;
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}
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long delay = System.currentTimeMillis() - start;
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ourLog.info("Wrote {} resources at {}ms / res", total, delay / total);
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//sync 13:57:14.683 [main] INFO ca.uhn.fhir.jpa.config.Tmp - Wrote 6000 resources at 7ms / res
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}
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(Tmp.class);
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}
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@ -57,6 +57,7 @@ import org.hl7.fhir.dstu21.model.Encounter;
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import org.hl7.fhir.dstu21.model.Encounter.EncounterClass;
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import org.hl7.fhir.dstu21.model.Encounter.EncounterLocationComponent;
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import org.hl7.fhir.dstu21.model.Encounter.EncounterState;
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import org.hl7.fhir.dstu21.model.Enumerations.AdministrativeGender;
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import org.hl7.fhir.dstu21.model.IdType;
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import org.hl7.fhir.dstu21.model.ImagingStudy;
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import org.hl7.fhir.dstu21.model.InstantType;
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@ -111,10 +112,10 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
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@Override
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public void before() throws Exception {
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super.before();
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myDaoConfig.setAllowMultipleDelete(true);
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}
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private void checkParamMissing(String paramName) throws IOException, ClientProtocolException {
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HttpGet get = new HttpGet(ourServerBase + "/Observation?" + paramName + ":missing=false");
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CloseableHttpResponse resp = ourHttpClient.execute(get);
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@ -135,7 +136,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
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Device dev1 = new Device();
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dev1.setManufacturer("Some Manufacturer");
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IIdType devId1 = myDeviceDao.create(dev1).getId().toUnqualifiedVersionless();
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Device dev2 = new Device();
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dev2.setManufacturer("Some Manufacturer 2");
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myDeviceDao.create(dev2).getId().toUnqualifiedVersionless();
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@ -159,12 +160,12 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
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obs3.getCode().addCoding().setCode("CODE3");
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obs3.setValue(new StringType("obsvalue3"));
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IIdType obsId3 = myObservationDao.create(obs3).getId().toUnqualifiedVersionless();
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List<IIdType> actual;
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StringAndListParam param;
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ourLog.info("Pt1:{} Pt2:{} Obs1:{} Obs2:{} Obs3:{}", new Object[] {ptId1.getIdPart(), ptId2.getIdPart(), obsId1.getIdPart(), obsId2.getIdPart(), obsId3.getIdPart()});
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ourLog.info("Pt1:{} Pt2:{} Obs1:{} Obs2:{} Obs3:{}", new Object[] { ptId1.getIdPart(), ptId2.getIdPart(), obsId1.getIdPart(), obsId2.getIdPart(), obsId3.getIdPart() });
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param = new StringAndListParam();
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param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
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@ -176,13 +177,12 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
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.withParameter(Parameters.class, Constants.PARAM_CONTENT, new StringType("obsvalue1"))
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.execute();
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//@formatter:on
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actual = toUnqualifiedVersionlessIds((Bundle)response.getParameter().get(0).getResource());
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actual = toUnqualifiedVersionlessIds((Bundle) response.getParameter().get(0).getResource());
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assertThat(actual, containsInAnyOrder(ptId1, obsId1, devId1));
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}
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@Test
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public void testBundleCreate() throws Exception {
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IGenericClient client = ourClient;
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@ -211,7 +211,6 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
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}
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}
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// private void delete(String theResourceType, String theParamName, String theParamValue) {
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// Bundle resources;
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// do {
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@ -244,7 +243,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
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subs.getChannel().setType(SubscriptionChannelType.WEBSOCKET);
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subs.setCriteria("Observation?");
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IIdType id = ourClient.create().resource(subs).execute().getId().toUnqualifiedVersionless();
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//@formatter:off
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Bundle resp = ourClient
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.search()
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@ -297,24 +296,11 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
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ourClient.transaction().withResources(resources).prettyPrint().encodedXml().execute();
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//@formatter:on
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Bundle found = ourClient
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.search()
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.forResource(Organization.class)
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.where(Organization.NAME.matches()
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.value("rpdstu2_testCountParam_01"))
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.count(10)
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.returnBundle(Bundle.class)
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.execute();
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Bundle found = ourClient.search().forResource(Organization.class).where(Organization.NAME.matches().value("rpdstu2_testCountParam_01")).count(10).returnBundle(Bundle.class).execute();
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assertEquals(100, found.getTotal());
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assertEquals(10, found.getEntry().size());
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found = ourClient
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.search()
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.forResource(Organization.class)
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.where(Organization.NAME.matches().value("rpdstu2_testCountParam_01"))
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.count(999)
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.returnBundle(Bundle.class)
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.execute();
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found = ourClient.search().forResource(Organization.class).where(Organization.NAME.matches().value("rpdstu2_testCountParam_01")).count(999).returnBundle(Bundle.class).execute();
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//@formatter:on
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assertEquals(100, found.getTotal());
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assertEquals(50, found.getEntry().size());
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@ -353,7 +339,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
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assertThat(e.getMessage(), containsString("Question with linkId[link0]"));
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}
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}
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@Test
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public void testUpdateResourceConditionalComplex() throws IOException {
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Patient pt = new Patient();
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@ -374,12 +360,12 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
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} finally {
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response.close();
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}
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pt.addName().addFamily("FOO");
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resource = myFhirCtx.newXmlParser().encodeResourceToString(pt);
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HttpPut put = new HttpPut(ourServerBase + "/Patient?identifier=" + ("http://general-hospital.co.uk/Identifiers|09832345234543876876".replace("|", UrlUtil.escape("|"))));
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put.setEntity(new StringEntity(resource, ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
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IdType id2;
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response = ourHttpClient.execute(put);
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try {
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@ -390,7 +376,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
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} finally {
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response.close();
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}
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assertEquals(id.getIdPart(), id2.getIdPart());
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assertEquals("1", id.getVersionIdPart());
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assertEquals("2", id2.getVersionIdPart());
|
||||
|
|
@ -416,7 +402,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
} finally {
|
||||
response.close();
|
||||
}
|
||||
|
||||
|
||||
IdType id2;
|
||||
response = ourHttpClient.execute(post);
|
||||
try {
|
||||
|
|
@ -427,7 +413,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
} finally {
|
||||
response.close();
|
||||
}
|
||||
|
||||
|
||||
// //@formatter:off
|
||||
// IIdType id3 = ourClient
|
||||
// .update()
|
||||
|
|
@ -435,10 +421,10 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
// .conditionalByUrl("Patient?identifier=http://general-hospital.co.uk/Identifiers|09832345234543876876")
|
||||
// .execute().getId();
|
||||
// //@formatter:on
|
||||
|
||||
|
||||
assertEquals(id.getValue(), id2.getValue());
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testCreateResourceConditional() throws IOException {
|
||||
String methodName = "testCreateResourceConditional";
|
||||
|
|
@ -581,12 +567,12 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
String methodName = "testDeleteConditionalMultiple";
|
||||
|
||||
myDaoConfig.setAllowMultipleDelete(false);
|
||||
|
||||
|
||||
Patient p = new Patient();
|
||||
p.addIdentifier().setSystem("urn:system").setValue(methodName);
|
||||
p.addName().addFamily("FAM1");
|
||||
IIdType id1 = myPatientDao.create(p).getId().toUnqualifiedVersionless();
|
||||
|
||||
|
||||
p = new Patient();
|
||||
p.addIdentifier().setSystem("urn:system").setValue(methodName);
|
||||
p.addName().addFamily("FAM2");
|
||||
|
|
@ -602,15 +588,16 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
//@formatter:on
|
||||
fail();
|
||||
} catch (PreconditionFailedException e) {
|
||||
assertEquals("HTTP 412 Precondition Failed: Failed to DELETE resource with match URL \"Patient?identifier=testDeleteConditionalMultiple\" because this search matched 2 resources", e.getMessage());
|
||||
assertEquals("HTTP 412 Precondition Failed: Failed to DELETE resource with match URL \"Patient?identifier=testDeleteConditionalMultiple\" because this search matched 2 resources",
|
||||
e.getMessage());
|
||||
}
|
||||
|
||||
|
||||
// Not deleted yet..
|
||||
ourClient.read().resource("Patient").withId(id1).execute();
|
||||
ourClient.read().resource("Patient").withId(id2).execute();
|
||||
|
||||
myDaoConfig.setAllowMultipleDelete(true);
|
||||
|
||||
|
||||
//@formatter:off
|
||||
ourClient
|
||||
.delete()
|
||||
|
|
@ -686,7 +673,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Based on email from Rene Spronk
|
||||
*/
|
||||
|
|
@ -713,8 +700,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
}
|
||||
|
||||
/*
|
||||
* Try it with a raw socket call. The Apache client won't let us use the unescaped "|" in the URL but we want to
|
||||
* make sure that works too..
|
||||
* Try it with a raw socket call. The Apache client won't let us use the unescaped "|" in the URL but we want to make sure that works too..
|
||||
*/
|
||||
Socket sock = new Socket();
|
||||
sock.setSoTimeout(3000);
|
||||
|
|
@ -842,7 +828,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
IIdType devId = ourClient.create().resource(dev).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Location locParent = new Location();
|
||||
locParent.setName(methodName+"Parent");
|
||||
locParent.setName(methodName + "Parent");
|
||||
IIdType locPId = ourClient.create().resource(locParent).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Location locChild = new Location();
|
||||
|
|
@ -854,7 +840,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
encU.getPatient().setReferenceElement(patientId);
|
||||
encU.addLocation().getLocation().setReferenceElement(locCId);
|
||||
IIdType encUId = ourClient.create().resource(encU).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
|
||||
Encounter enc = new Encounter();
|
||||
enc.getPatient().setReferenceElement(patientId);
|
||||
enc.addLocation().getLocation().setReferenceElement(locCId);
|
||||
|
|
@ -867,7 +853,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
IIdType obsId = ourClient.create().resource(obs).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
ourLog.info("IDs: EncU:" + encUId.getIdPart() + " Enc:" + encId.getIdPart() + " " + patientId.toUnqualifiedVersionless());
|
||||
|
||||
|
||||
Parameters output = ourClient.operation().onInstance(encId).named("everything").withNoParameters(Parameters.class).execute();
|
||||
Bundle b = (Bundle) output.getParameter().get(0).getResource();
|
||||
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
|
||||
|
|
@ -906,7 +892,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
IIdType devId = ourClient.create().resource(dev).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Location locParent = new Location();
|
||||
locParent.setName(methodName+"Parent");
|
||||
locParent.setName(methodName + "Parent");
|
||||
IIdType locPId = ourClient.create().resource(locParent).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Location locChild = new Location();
|
||||
|
|
@ -917,7 +903,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
Encounter encU = new Encounter();
|
||||
encU.addIdentifier().setValue(methodName);
|
||||
IIdType encUId = ourClient.create().resource(encU).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
|
||||
Encounter enc = new Encounter();
|
||||
enc.getPatient().setReferenceElement(patientId);
|
||||
enc.addLocation().getLocation().setReferenceElement(locCId);
|
||||
|
|
@ -995,18 +981,18 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
assertThat(ids.size(), greaterThan(10));
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Test for #226
|
||||
*/
|
||||
@Test
|
||||
public void testEverythingPatientIncludesBackReferences() throws Exception {
|
||||
String methodName = "testEverythingIncludesBackReferences";
|
||||
|
||||
|
||||
Medication med = new Medication();
|
||||
med.getCode().setText(methodName);
|
||||
IIdType medId = myMedicationDao.create(med).getId().toUnqualifiedVersionless();
|
||||
|
||||
|
||||
Patient pat = new Patient();
|
||||
pat.addAddress().addLine(methodName);
|
||||
IIdType patId = myPatientDao.create(pat).getId().toUnqualifiedVersionless();
|
||||
|
|
@ -1015,7 +1001,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
mo.getPatient().setReferenceElement(patId);
|
||||
mo.setMedication(new Reference(medId));
|
||||
IIdType moId = myMedicationOrderDao.create(mo).getId().toUnqualifiedVersionless();
|
||||
|
||||
|
||||
Parameters output = ourClient.operation().onInstance(patId).named("everything").withNoParameters(Parameters.class).execute();
|
||||
Bundle b = (Bundle) output.getParameter().get(0).getResource();
|
||||
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
|
||||
|
|
@ -1058,8 +1044,6 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
|
||||
}
|
||||
|
||||
|
||||
|
||||
@Test
|
||||
public void testEverythingPatientOperation() throws Exception {
|
||||
String methodName = "testEverythingOperation";
|
||||
|
|
@ -1104,27 +1088,27 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
|
||||
ourLog.info(ids.toString());
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testEverythingPatientType() throws Exception {
|
||||
String methodName = "testEverythingPatientType";
|
||||
|
||||
|
||||
Organization o1 = new Organization();
|
||||
o1.setName(methodName+"1");
|
||||
o1.setName(methodName + "1");
|
||||
IIdType o1Id = ourClient.create().resource(o1).execute().getId().toUnqualifiedVersionless();
|
||||
Organization o2 = new Organization();
|
||||
o2.setName(methodName+"2");
|
||||
o2.setName(methodName + "2");
|
||||
IIdType o2Id = ourClient.create().resource(o2).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addName().addFamily(methodName+"1");
|
||||
p1.addName().addFamily(methodName + "1");
|
||||
p1.getManagingOrganization().setReferenceElement(o1Id);
|
||||
IIdType p1Id = ourClient.create().resource(p1).execute().getId().toUnqualifiedVersionless();
|
||||
Patient p2 = new Patient();
|
||||
p2.addName().addFamily(methodName+"2");
|
||||
p2.addName().addFamily(methodName + "2");
|
||||
p2.getManagingOrganization().setReferenceElement(o2Id);
|
||||
IIdType p2Id = ourClient.create().resource(p2).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
|
||||
Condition c1 = new Condition();
|
||||
c1.getPatient().setReferenceElement(p1Id);
|
||||
IIdType c1Id = ourClient.create().resource(c1).execute().getId().toUnqualifiedVersionless();
|
||||
|
|
@ -1133,7 +1117,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
IIdType c2Id = ourClient.create().resource(c2).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Condition c3 = new Condition();
|
||||
c3.addIdentifier().setValue(methodName+"3");
|
||||
c3.addIdentifier().setValue(methodName + "3");
|
||||
IIdType c3Id = ourClient.create().resource(c3).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Parameters output = ourClient.operation().onType(Patient.class).named("everything").withNoParameters(Parameters.class).execute();
|
||||
|
|
@ -1152,18 +1136,18 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
Organization org = new Organization();
|
||||
org.setName(methodName);
|
||||
IIdType oId = ourClient.create().resource(org).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
|
||||
long time1 = System.currentTimeMillis();
|
||||
Thread.sleep(10);
|
||||
|
||||
|
||||
Patient p = new Patient();
|
||||
p.addName().addFamily(methodName);
|
||||
p.getManagingOrganization().setReferenceElement(oId);
|
||||
IIdType pId = ourClient.create().resource(p).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
|
||||
long time2 = System.currentTimeMillis();
|
||||
Thread.sleep(10);
|
||||
|
||||
|
||||
Condition c = new Condition();
|
||||
c.getCode().setText(methodName);
|
||||
c.getPatient().setReferenceElement(pId);
|
||||
|
|
@ -1171,8 +1155,8 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
|
||||
Thread.sleep(10);
|
||||
long time3 = System.currentTimeMillis();
|
||||
|
||||
// %3E=> %3C=<
|
||||
|
||||
// %3E=> %3C=<
|
||||
|
||||
HttpGet get = new HttpGet(ourServerBase + "/Patient/" + pId.getIdPart() + "/$everything?_lastUpdated=%3E" + new InstantType(new Date(time1)).getValueAsString());
|
||||
CloseableHttpResponse response = ourHttpClient.execute(get);
|
||||
|
|
@ -1188,7 +1172,8 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
response.close();
|
||||
}
|
||||
|
||||
get = new HttpGet(ourServerBase + "/Patient/" + pId.getIdPart() + "/$everything?_lastUpdated=%3E" + new InstantType(new Date(time2)).getValueAsString() + "&_lastUpdated=%3C" + new InstantType(new Date(time3)).getValueAsString());
|
||||
get = new HttpGet(ourServerBase + "/Patient/" + pId.getIdPart() + "/$everything?_lastUpdated=%3E" + new InstantType(new Date(time2)).getValueAsString() + "&_lastUpdated=%3C"
|
||||
+ new InstantType(new Date(time3)).getValueAsString());
|
||||
response = ourHttpClient.execute(get);
|
||||
try {
|
||||
assertEquals(200, response.getStatusLine().getStatusCode());
|
||||
|
|
@ -1229,7 +1214,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
} finally {
|
||||
response.close();
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
|
|
@ -1805,11 +1790,11 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
org = new Organization();
|
||||
org.addIdentifier().setSystem("urn:system:rpdstu2").setValue(methodName + "01");
|
||||
org.setName(methodName + "name");
|
||||
IIdType orgNotMissing = (IdType) ourClient.create().resource(org).prettyPrint().encodedXml().execute().getId().toUnqualifiedVersionless();
|
||||
IIdType orgNotMissing = ourClient.create().resource(org).prettyPrint().encodedXml().execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
org = new Organization();
|
||||
org.addIdentifier().setSystem("urn:system:rpdstu2").setValue(methodName + "01");
|
||||
IIdType orgMissing = (IdType) ourClient.create().resource(org).prettyPrint().encodedXml().execute().getId().toUnqualifiedVersionless();
|
||||
IIdType orgMissing = ourClient.create().resource(org).prettyPrint().encodedXml().execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
{
|
||||
//@formatter:off
|
||||
|
|
@ -1817,7 +1802,7 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
.search()
|
||||
.forResource(Organization.class)
|
||||
.where(Organization.NAME.isMissing(false))
|
||||
.limitTo(100)
|
||||
.count(100)
|
||||
.prettyPrint()
|
||||
.returnBundle(Bundle.class)
|
||||
.execute();
|
||||
|
|
@ -2207,14 +2192,14 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
.returnBundle(Bundle.class)
|
||||
.execute();
|
||||
//@formatter:on
|
||||
|
||||
|
||||
assertEquals(1, actual.getEntry().size());
|
||||
assertEquals(p1Id.getIdPart(), actual.getEntry().get(0).getResource().getIdElement().getIdPart());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testValidateResource() throws IOException {
|
||||
public void testValidateResourceWithNoIdParameters() throws IOException {
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.addName().addGiven("James");
|
||||
|
|
@ -2224,8 +2209,6 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
input.addParameter().setName("resource").setResource(patient);
|
||||
|
||||
String inputStr = myFhirCtx.newXmlParser().encodeResourceToString(input);
|
||||
ourLog.info(inputStr);
|
||||
|
||||
HttpPost post = new HttpPost(ourServerBase + "/Patient/$validate?_pretty=true");
|
||||
post.setEntity(new StringEntity(inputStr, ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
|
||||
|
||||
|
|
@ -2235,6 +2218,61 @@ public class ResourceProviderDstu21Test extends BaseResourceProviderDstu21Test {
|
|||
ourLog.info(resp);
|
||||
assertEquals(200, response.getStatusLine().getStatusCode());
|
||||
assertThat(resp, not(containsString("Resource has no id")));
|
||||
assertThat(resp, containsString("<pre>No issues detected during validation</pre>"));
|
||||
assertThat(resp,
|
||||
stringContainsInOrder("<issue>", "<severity value=\"information\"/>", "<code value=\"informational\"/>", "<diagnostics value=\"No issues detected during validation\"/>", "</issue>"));
|
||||
} finally {
|
||||
IOUtils.closeQuietly(response.getEntity().getContent());
|
||||
response.close();
|
||||
}
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testValidateResourceWithNoIdRaw() throws IOException {
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.addName().addGiven("James");
|
||||
patient.setBirthDateElement(new DateType("2011-02-02"));
|
||||
|
||||
String inputStr = myFhirCtx.newXmlParser().encodeResourceToString(patient);
|
||||
HttpPost post = new HttpPost(ourServerBase + "/Patient/$validate");
|
||||
post.setEntity(new StringEntity(inputStr, ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
|
||||
|
||||
CloseableHttpResponse response = ourHttpClient.execute(post);
|
||||
try {
|
||||
String resp = IOUtils.toString(response.getEntity().getContent());
|
||||
ourLog.info(resp);
|
||||
assertEquals(200, response.getStatusLine().getStatusCode());
|
||||
assertThat(resp, not(containsString("Resource has no id")));
|
||||
assertThat(resp, containsString("<pre>No issues detected during validation</pre>"));
|
||||
assertThat(resp,
|
||||
stringContainsInOrder("<issue>", "<severity value=\"information\"/>", "<code value=\"informational\"/>", "<diagnostics value=\"No issues detected during validation\"/>", "</issue>"));
|
||||
} finally {
|
||||
IOUtils.closeQuietly(response.getEntity().getContent());
|
||||
response.close();
|
||||
}
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testValidateResourceBaseWithNoIdRaw() throws IOException {
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.addName().addGiven("James");
|
||||
patient.setBirthDateElement(new DateType("2011-02-02"));
|
||||
patient.addContact().setGender(AdministrativeGender.MALE);
|
||||
|
||||
String inputStr = myFhirCtx.newXmlParser().encodeResourceToString(patient);
|
||||
HttpPost post = new HttpPost(ourServerBase + "/Patient/$validate");
|
||||
post.setEntity(new StringEntity(inputStr, ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
|
||||
|
||||
CloseableHttpResponse response = ourHttpClient.execute(post);
|
||||
try {
|
||||
String resp = IOUtils.toString(response.getEntity().getContent());
|
||||
ourLog.info(resp);
|
||||
assertEquals(412, response.getStatusLine().getStatusCode());
|
||||
assertThat(resp, not(containsString("Resource has no id")));
|
||||
assertThat(resp,
|
||||
stringContainsInOrder(">ERROR<","/f:Patient/f:contact","<pre>SHALL at least contain a contact's details or a reference to an organization</pre>","<issue><severity value=\"error\"/>","<code value=\"processing\"/>","<diagnostics value=\"SHALL at least contain a contact's details or a reference to an organization\"/>","<location value=\"/f:Patient/f:contact\"/>"));
|
||||
} finally {
|
||||
IOUtils.closeQuietly(response.getEntity().getContent());
|
||||
response.close();
|
||||
|
|
|
|||
|
|
@ -88,6 +88,7 @@ public class FhirServerConfigDstu21 extends BaseJavaConfigDstu21 {
|
|||
extraProperties.put("hibernate.search.default.directory_provider", "filesystem");
|
||||
extraProperties.put("hibernate.search.default.indexBase", "target/lucenefiles");
|
||||
extraProperties.put("hibernate.search.lucene_version", "LUCENE_CURRENT");
|
||||
// extraProperties.put("hibernate.search.default.worker.execution", "async");
|
||||
return extraProperties;
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,39 @@
|
|||
package ca.uhn.fhir.model.primitive;
|
||||
|
||||
import java.util.Arrays;
|
||||
import java.util.Calendar;
|
||||
import java.util.TimeZone;
|
||||
import java.util.TreeSet;
|
||||
|
||||
import org.junit.Test;
|
||||
|
||||
public class DateDtTest {
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(DateDtTest.class);
|
||||
|
||||
@Test
|
||||
public void testPrecision() {
|
||||
|
||||
// ourLog.info(""+ new TreeSet<String>(Arrays.asList(TimeZone.getAvailableIDs())));
|
||||
|
||||
final Calendar cal = Calendar.getInstance();
|
||||
cal.setTimeZone(TimeZone.getTimeZone("GMT"));
|
||||
cal.set(1990, Calendar.JANUARY, 1, 0, 0, 0);
|
||||
ourLog.info("Time: {}", cal); // 631152000775
|
||||
|
||||
DateDt dateDt = new DateDt(cal.getTime());
|
||||
long time = dateDt.getValue().getTime();
|
||||
ourLog.info("Time: {}", time); // 631152000775
|
||||
ourLog.info("Time: {}", dateDt.getValue()); // 631152000775
|
||||
|
||||
dateDt.setTimeZone(TimeZone.getTimeZone("Europe/Berlin"));
|
||||
time = dateDt.getValue().getTime();
|
||||
ourLog.info("Time: {}", time); // 631152000775
|
||||
ourLog.info("Time: {}", dateDt.getValue()); // 631152000775
|
||||
|
||||
String valueAsString = dateDt.getValueAsString();
|
||||
ourLog.info(valueAsString);
|
||||
// is 631152000030
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
7
pom.xml
7
pom.xml
|
|
@ -248,7 +248,6 @@
|
|||
<hibernate_version>5.0.6.Final</hibernate_version>
|
||||
<hibernate_validator_version>5.2.2.Final</hibernate_validator_version>
|
||||
<maven_assembly_plugin_version>2.5.3</maven_assembly_plugin_version>
|
||||
<maven_failsafe_plugin_version>2.18.1</maven_failsafe_plugin_version>
|
||||
<maven_license_plugin_version>1.8</maven_license_plugin_version>
|
||||
<maven_site_plugin_version>3.4</maven_site_plugin_version>
|
||||
<maven_source_plugin_version>2.4</maven_source_plugin_version>
|
||||
|
|
@ -731,7 +730,7 @@
|
|||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-failsafe-plugin</artifactId>
|
||||
<version>2.19</version>
|
||||
<version>2.19.1</version>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
|
|
@ -741,7 +740,7 @@
|
|||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-surefire-plugin</artifactId>
|
||||
<version>2.19</version>
|
||||
<version>2.19.1</version>
|
||||
<configuration>
|
||||
<redirectTestOutputToFile>true</redirectTestOutputToFile>
|
||||
<runOrder>random</runOrder>
|
||||
|
|
@ -1314,7 +1313,7 @@
|
|||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-surefire-report-plugin</artifactId>
|
||||
<version>2.19</version>
|
||||
<version>2.19.1</version>
|
||||
<reportSets>
|
||||
<reportSet>
|
||||
<reports>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
<b>hapi-fhir-cli</b> is the HAPI FHIR Command Line tool. It features a number of HAPI's
|
||||
built-in features as easy to use command line options.
|
||||
</p>
|
||||
|
||||
|
||||
<subsection name="Download and Installation">
|
||||
<p>
|
||||
You can get the tool by downloading it from our
|
||||
|
|
@ -35,7 +35,12 @@
|
|||
|
||||
<subsection name="Troubleshooting">
|
||||
<p>
|
||||
The tool should work correctly on any system that has Java 6 (or newer) installed. If
|
||||
<b>Note on Java version support:</b> The HAPI library is designed to
|
||||
work in Java 6+, but the Command Line Tool required a minimum of Java 8. This
|
||||
is because the Jetty Web Server that is used within the tool has this requirement.
|
||||
</p>
|
||||
<p>
|
||||
The tool should work correctly on any system that has Java 8 (or newer) installed. If
|
||||
it is not working correctly, first try the following command to test if Java is installed:<br/>
|
||||
<code>$ java -version</code>
|
||||
</p>
|
||||
|
|
|
|||
Loading…
Reference in New Issue