Oracle: Ensure migrated database still takes large resource text updates (#5629)

* First pass at fix to Oracle HFJ_RES_VER.RES_TEXT_VC migration.

* First stab at agreed upon solution.

* Fix error with 4001 by removing unnecessary annotation.

* Spotless and TODO.

* Remove annotation for good and set length to LONG32.

* Fix copyright year.

* Finalize changelog.

* Remove migration changes.  Fix unit test.

* Fix compile error.

* Log output.

* Refactor resource history code into new ResourceHistoryCalculator.

* Spotless.

* Convert record to POJO.

* Restore pre-17 switch statement.

* Finalize new resource history calculator code and tests.

* Spotless.

* Remove logging.

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/7_0_0/5633-oracle-hfj-res-ver-clob-migration.yaml

Apply code reviewer suggestion

Co-authored-by: Michael Buckley <michaelabuckley@gmail.com>

* Code review feedback.

---------

Co-authored-by: Michael Buckley <michaelabuckley@gmail.com>
This commit is contained in:
Luke deGruchy 2024-01-26 11:09:01 -05:00 committed by GitHub
parent 224e569317
commit d3876c546f
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
13 changed files with 634 additions and 45 deletions

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@ -0,0 +1,5 @@
---
type: fix
issue: 5633
title: "Smile failed to save resources running on Oracle when installed from 2023-02 or earlier.
This has been fixed."

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@ -75,4 +75,8 @@ public class HibernatePropertiesProvider {
public DataSource getDataSource() { public DataSource getDataSource() {
return myEntityManagerFactory.getDataSource(); return myEntityManagerFactory.getDataSource();
} }
public boolean isOracleDialect() {
return getDialect() instanceof org.hibernate.dialect.OracleDialect;
}
} }

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@ -51,6 +51,7 @@ import ca.uhn.fhir.jpa.dao.IJpaStorageResourceParser;
import ca.uhn.fhir.jpa.dao.ISearchBuilder; import ca.uhn.fhir.jpa.dao.ISearchBuilder;
import ca.uhn.fhir.jpa.dao.JpaStorageResourceParser; import ca.uhn.fhir.jpa.dao.JpaStorageResourceParser;
import ca.uhn.fhir.jpa.dao.MatchResourceUrlService; import ca.uhn.fhir.jpa.dao.MatchResourceUrlService;
import ca.uhn.fhir.jpa.dao.ResourceHistoryCalculator;
import ca.uhn.fhir.jpa.dao.SearchBuilderFactory; import ca.uhn.fhir.jpa.dao.SearchBuilderFactory;
import ca.uhn.fhir.jpa.dao.TransactionProcessor; import ca.uhn.fhir.jpa.dao.TransactionProcessor;
import ca.uhn.fhir.jpa.dao.data.IResourceModifiedDao; import ca.uhn.fhir.jpa.dao.data.IResourceModifiedDao;
@ -869,4 +870,10 @@ public class JpaConfig {
public IMetaTagSorter metaTagSorter() { public IMetaTagSorter metaTagSorter() {
return new MetaTagSorterAlphabetical(); return new MetaTagSorterAlphabetical();
} }
@Bean
public ResourceHistoryCalculator resourceHistoryCalculator(
FhirContext theFhirContext, HibernatePropertiesProvider theHibernatePropertiesProvider) {
return new ResourceHistoryCalculator(theFhirContext, theHibernatePropertiesProvider.isOracleDialect());
}
} }

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@ -85,7 +85,6 @@ import ca.uhn.fhir.model.api.TagList;
import ca.uhn.fhir.model.base.composite.BaseCodingDt; import ca.uhn.fhir.model.base.composite.BaseCodingDt;
import ca.uhn.fhir.model.primitive.IdDt; import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.parser.DataFormatException; import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.rest.api.Constants; import ca.uhn.fhir.rest.api.Constants;
import ca.uhn.fhir.rest.api.InterceptorInvocationTimingEnum; import ca.uhn.fhir.rest.api.InterceptorInvocationTimingEnum;
import ca.uhn.fhir.rest.api.RestOperationTypeEnum; import ca.uhn.fhir.rest.api.RestOperationTypeEnum;
@ -105,8 +104,6 @@ import com.google.common.annotations.VisibleForTesting;
import com.google.common.base.Charsets; import com.google.common.base.Charsets;
import com.google.common.collect.Sets; import com.google.common.collect.Sets;
import com.google.common.hash.HashCode; import com.google.common.hash.HashCode;
import com.google.common.hash.HashFunction;
import com.google.common.hash.Hashing;
import jakarta.annotation.Nonnull; import jakarta.annotation.Nonnull;
import jakarta.annotation.Nullable; import jakarta.annotation.Nullable;
import jakarta.annotation.PostConstruct; import jakarta.annotation.PostConstruct;
@ -264,6 +261,9 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
@Autowired @Autowired
private PlatformTransactionManager myTransactionManager; private PlatformTransactionManager myTransactionManager;
@Autowired
protected ResourceHistoryCalculator myResourceHistoryCalculator;
protected final CodingSpy myCodingSpy = new CodingSpy(); protected final CodingSpy myCodingSpy = new CodingSpy();
@VisibleForTesting @VisibleForTesting
@ -277,6 +277,11 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
mySearchParamPresenceSvc = theSearchParamPresenceSvc; mySearchParamPresenceSvc = theSearchParamPresenceSvc;
} }
@VisibleForTesting
public void setResourceHistoryCalculator(ResourceHistoryCalculator theResourceHistoryCalculator) {
myResourceHistoryCalculator = theResourceHistoryCalculator;
}
@Override @Override
protected IInterceptorBroadcaster getInterceptorBroadcaster() { protected IInterceptorBroadcaster getInterceptorBroadcaster() {
return myInterceptorBroadcaster; return myInterceptorBroadcaster;
@ -643,6 +648,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
theEntity.setResourceType(toResourceName(theResource)); theEntity.setResourceType(toResourceName(theResource));
} }
byte[] resourceBinary;
String resourceText; String resourceText;
ResourceEncodingEnum encoding; ResourceEncodingEnum encoding;
boolean changed = false; boolean changed = false;
@ -659,6 +665,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
if (address != null) { if (address != null) {
encoding = ResourceEncodingEnum.ESR; encoding = ResourceEncodingEnum.ESR;
resourceBinary = null;
resourceText = address.getProviderId() + ":" + address.getLocation(); resourceText = address.getProviderId() + ":" + address.getLocation();
changed = true; changed = true;
@ -675,10 +682,15 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
theEntity.setFhirVersion(myContext.getVersion().getVersion()); theEntity.setFhirVersion(myContext.getVersion().getVersion());
HashFunction sha256 = Hashing.sha256(); // TODO: LD: Once 2024-02 it out the door we should consider further refactoring here to move
resourceText = encodeResource(theResource, encoding, excludeElements, myContext); // more of this logic within the calculator and eliminate more local variables
encoding = ResourceEncodingEnum.JSON; final ResourceHistoryState calculate = myResourceHistoryCalculator.calculateResourceHistoryState(
HashCode hashCode = sha256.hashUnencodedChars(resourceText); theResource, encoding, excludeElements);
resourceText = calculate.getResourceText();
resourceBinary = calculate.getResourceBinary();
encoding = calculate.getEncoding(); // This may be a no-op
final HashCode hashCode = calculate.getHashCode();
String hashSha256 = hashCode.toString(); String hashSha256 = hashCode.toString();
if (!hashSha256.equals(theEntity.getHashSha256())) { if (!hashSha256.equals(theEntity.getHashSha256())) {
@ -696,6 +708,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
} else { } else {
encoding = null; encoding = null;
resourceBinary = null;
resourceText = null; resourceText = null;
} }
@ -713,6 +726,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
changed = true; changed = true;
} }
resourceBinary = null;
resourceText = null; resourceText = null;
encoding = ResourceEncodingEnum.DEL; encoding = ResourceEncodingEnum.DEL;
} }
@ -737,13 +751,17 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
if (currentHistoryVersion == null || !currentHistoryVersion.hasResource()) { if (currentHistoryVersion == null || !currentHistoryVersion.hasResource()) {
changed = true; changed = true;
} else { } else {
changed = !StringUtils.equals(currentHistoryVersion.getResourceTextVc(), resourceText); // TODO: LD: Once 2024-02 it out the door we should consider further refactoring here to move
// more of this logic within the calculator and eliminate more local variables
changed = myResourceHistoryCalculator.isResourceHistoryChanged(
currentHistoryVersion, resourceBinary, resourceText);
} }
} }
} }
EncodedResource retVal = new EncodedResource(); EncodedResource retVal = new EncodedResource();
retVal.setEncoding(encoding); retVal.setEncoding(encoding);
retVal.setResourceBinary(resourceBinary);
retVal.setResourceText(resourceText); retVal.setResourceText(resourceText);
retVal.setChanged(changed); retVal.setChanged(changed);
@ -1393,8 +1411,11 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
ResourceEncodingEnum encoding = myStorageSettings.getResourceEncoding(); ResourceEncodingEnum encoding = myStorageSettings.getResourceEncoding();
List<String> excludeElements = new ArrayList<>(8); List<String> excludeElements = new ArrayList<>(8);
getExcludedElements(historyEntity.getResourceType(), excludeElements, theResource.getMeta()); getExcludedElements(historyEntity.getResourceType(), excludeElements, theResource.getMeta());
String encodedResourceString = encodeResource(theResource, encoding, excludeElements, myContext); String encodedResourceString =
boolean changed = !StringUtils.equals(historyEntity.getResourceTextVc(), encodedResourceString); myResourceHistoryCalculator.encodeResource(theResource, encoding, excludeElements);
byte[] resourceBinary = ResourceHistoryCalculator.getResourceBinary(encoding, encodedResourceString);
final boolean changed = myResourceHistoryCalculator.isResourceHistoryChanged(
historyEntity, resourceBinary, encodedResourceString);
historyEntity.setUpdated(theTransactionDetails.getTransactionDate()); historyEntity.setUpdated(theTransactionDetails.getTransactionDate());
@ -1406,14 +1427,15 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
return historyEntity; return historyEntity;
} }
populateEncodedResource(encodedResource, encodedResourceString, ResourceEncodingEnum.JSON); myResourceHistoryCalculator.populateEncodedResource(
encodedResource, encodedResourceString, resourceBinary, encoding);
} }
/* /*
* Save the resource itself to the resourceHistoryTable * Save the resource itself to the resourceHistoryTable
*/ */
historyEntity = myEntityManager.merge(historyEntity); historyEntity = myEntityManager.merge(historyEntity);
historyEntity.setEncoding(encodedResource.getEncoding()); historyEntity.setEncoding(encodedResource.getEncoding());
historyEntity.setResource(encodedResource.getResourceBinary());
historyEntity.setResourceTextVc(encodedResource.getResourceText()); historyEntity.setResourceTextVc(encodedResource.getResourceText());
myResourceHistoryTableDao.save(historyEntity); myResourceHistoryTableDao.save(historyEntity);
@ -1423,8 +1445,12 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
} }
private void populateEncodedResource( private void populateEncodedResource(
EncodedResource encodedResource, String encodedResourceString, ResourceEncodingEnum theEncoding) { EncodedResource encodedResource,
String encodedResourceString,
byte[] theResourceBinary,
ResourceEncodingEnum theEncoding) {
encodedResource.setResourceText(encodedResourceString); encodedResource.setResourceText(encodedResourceString);
encodedResource.setResourceBinary(theResourceBinary);
encodedResource.setEncoding(theEncoding); encodedResource.setEncoding(theEncoding);
} }
@ -1489,6 +1515,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
} }
historyEntry.setEncoding(theChanged.getEncoding()); historyEntry.setEncoding(theChanged.getEncoding());
historyEntry.setResource(theChanged.getResourceBinary());
historyEntry.setResourceTextVc(theChanged.getResourceText()); historyEntry.setResourceTextVc(theChanged.getResourceText());
ourLog.debug("Saving history entry ID[{}] for RES_ID[{}]", historyEntry.getId(), historyEntry.getResourceId()); ourLog.debug("Saving history entry ID[{}] for RES_ID[{}]", historyEntry.getId(), historyEntry.getResourceId());
@ -1926,16 +1953,6 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> extends BaseStora
return resourceText; return resourceText;
} }
public static String encodeResource(
IBaseResource theResource,
ResourceEncodingEnum theEncoding,
List<String> theExcludeElements,
FhirContext theContext) {
IParser parser = theEncoding.newParser(theContext);
parser.setDontEncodeElements(theExcludeElements);
return parser.encodeResourceToString(theResource);
}
private static String parseNarrativeTextIntoWords(IBaseResource theResource) { private static String parseNarrativeTextIntoWords(IBaseResource theResource) {
StringBuilder b = new StringBuilder(); StringBuilder b = new StringBuilder();

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@ -1709,17 +1709,11 @@ public abstract class BaseHapiFhirResourceDao<T extends IBaseResource> extends B
if (historyEntity.getEncoding() == ResourceEncodingEnum.JSONC if (historyEntity.getEncoding() == ResourceEncodingEnum.JSONC
|| historyEntity.getEncoding() == ResourceEncodingEnum.JSON) { || historyEntity.getEncoding() == ResourceEncodingEnum.JSON) {
byte[] resourceBytes = historyEntity.getResource(); byte[] resourceBytes = historyEntity.getResource();
// Always migrate data out of the bytes column
if (resourceBytes != null) { if (resourceBytes != null) {
String resourceText = decodeResource(resourceBytes, historyEntity.getEncoding()); String resourceText = decodeResource(resourceBytes, historyEntity.getEncoding());
ourLog.debug( if (myResourceHistoryCalculator.conditionallyAlterHistoryEntity(entity, historyEntity, resourceText)) {
"Storing text of resource {} version {} as inline VARCHAR", changed = true;
entity.getResourceId(), }
historyEntity.getVersion());
historyEntity.setResourceTextVc(resourceText);
historyEntity.setEncoding(ResourceEncodingEnum.JSON);
changed = true;
} }
} }
if (isBlank(historyEntity.getSourceUri()) && isBlank(historyEntity.getRequestId())) { if (isBlank(historyEntity.getSourceUri()) && isBlank(historyEntity.getRequestId())) {

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@ -24,6 +24,7 @@ import ca.uhn.fhir.jpa.model.entity.ResourceEncodingEnum;
class EncodedResource { class EncodedResource {
private boolean myChanged; private boolean myChanged;
private byte[] myResource;
private ResourceEncodingEnum myEncoding; private ResourceEncodingEnum myEncoding;
private String myResourceText; private String myResourceText;
@ -35,6 +36,14 @@ class EncodedResource {
myEncoding = theEncoding; myEncoding = theEncoding;
} }
public byte[] getResourceBinary() {
return myResource;
}
public void setResourceBinary(byte[] theResource) {
myResource = theResource;
}
public boolean isChanged() { public boolean isChanged() {
return myChanged; return myChanged;
} }

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@ -0,0 +1,134 @@
package ca.uhn.fhir.jpa.dao;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.model.entity.ResourceEncodingEnum;
import ca.uhn.fhir.jpa.model.entity.ResourceHistoryTable;
import ca.uhn.fhir.jpa.model.entity.ResourceTable;
import ca.uhn.fhir.parser.IParser;
import com.google.common.hash.HashCode;
import com.google.common.hash.HashFunction;
import com.google.common.hash.Hashing;
import jakarta.annotation.Nonnull;
import jakarta.annotation.Nullable;
import org.apache.commons.lang3.StringUtils;
import org.hl7.fhir.instance.model.api.IBaseResource;
import java.nio.charset.StandardCharsets;
import java.util.Arrays;
import java.util.List;
/**
* Responsible for various resource history-centric and {@link FhirContext} aware operations called by
* {@link BaseHapiFhirDao} or {@link BaseHapiFhirResourceDao} that require knowledge of whether an Oracle database is
* being used.
*/
public class ResourceHistoryCalculator {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ResourceHistoryCalculator.class);
private static final HashFunction SHA_256 = Hashing.sha256();
private final FhirContext myFhirContext;
private final boolean myIsOracleDialect;
public ResourceHistoryCalculator(FhirContext theFhirContext, boolean theIsOracleDialect) {
myFhirContext = theFhirContext;
myIsOracleDialect = theIsOracleDialect;
}
ResourceHistoryState calculateResourceHistoryState(
IBaseResource theResource, ResourceEncodingEnum theEncoding, List<String> theExcludeElements) {
final String encodedResource = encodeResource(theResource, theEncoding, theExcludeElements);
final byte[] resourceBinary;
final String resourceText;
final ResourceEncodingEnum encoding;
final HashCode hashCode;
if (myIsOracleDialect) {
resourceText = null;
resourceBinary = getResourceBinary(theEncoding, encodedResource);
encoding = theEncoding;
hashCode = SHA_256.hashBytes(resourceBinary);
} else {
resourceText = encodedResource;
resourceBinary = null;
encoding = ResourceEncodingEnum.JSON;
hashCode = SHA_256.hashUnencodedChars(encodedResource);
}
return new ResourceHistoryState(resourceText, resourceBinary, encoding, hashCode);
}
boolean conditionallyAlterHistoryEntity(
ResourceTable theEntity, ResourceHistoryTable theHistoryEntity, String theResourceText) {
if (!myIsOracleDialect) {
ourLog.debug(
"Storing text of resource {} version {} as inline VARCHAR",
theEntity.getResourceId(),
theHistoryEntity.getVersion());
theHistoryEntity.setResourceTextVc(theResourceText);
theHistoryEntity.setResource(null);
theHistoryEntity.setEncoding(ResourceEncodingEnum.JSON);
return true;
}
return false;
}
boolean isResourceHistoryChanged(
ResourceHistoryTable theCurrentHistoryVersion,
@Nullable byte[] theResourceBinary,
@Nullable String resourceText) {
if (myIsOracleDialect) {
return !Arrays.equals(theCurrentHistoryVersion.getResource(), theResourceBinary);
}
return !StringUtils.equals(theCurrentHistoryVersion.getResourceTextVc(), resourceText);
}
String encodeResource(
IBaseResource theResource, ResourceEncodingEnum theEncoding, List<String> theExcludeElements) {
final IParser parser = theEncoding.newParser(myFhirContext);
parser.setDontEncodeElements(theExcludeElements);
return parser.encodeResourceToString(theResource);
}
/**
* helper for returning the encoded byte array of the input resource string based on the theEncoding.
*
* @param theEncoding the theEncoding to used
* @param theEncodedResource the resource to encode
* @return byte array of the resource
*/
@Nonnull
static byte[] getResourceBinary(ResourceEncodingEnum theEncoding, String theEncodedResource) {
switch (theEncoding) {
case JSON:
return theEncodedResource.getBytes(StandardCharsets.UTF_8);
case JSONC:
return GZipUtil.compress(theEncodedResource);
default:
return new byte[0];
}
}
void populateEncodedResource(
EncodedResource theEncodedResource,
String theEncodedResourceString,
@Nullable byte[] theResourceBinary,
ResourceEncodingEnum theEncoding) {
if (myIsOracleDialect) {
populateEncodedResourceInner(theEncodedResource, null, theResourceBinary, theEncoding);
} else {
populateEncodedResourceInner(theEncodedResource, theEncodedResourceString, null, ResourceEncodingEnum.JSON);
}
}
private void populateEncodedResourceInner(
EncodedResource encodedResource,
String encodedResourceString,
byte[] theResourceBinary,
ResourceEncodingEnum theEncoding) {
encodedResource.setResourceText(encodedResourceString);
encodedResource.setResourceBinary(theResourceBinary);
encodedResource.setEncoding(theEncoding);
}
}

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@ -0,0 +1,86 @@
package ca.uhn.fhir.jpa.dao;
import ca.uhn.fhir.jpa.model.entity.ResourceEncodingEnum;
import com.google.common.hash.HashCode;
import jakarta.annotation.Nullable;
import org.hl7.fhir.instance.model.api.IBaseResource;
import java.util.Arrays;
import java.util.List;
import java.util.Objects;
import java.util.StringJoiner;
/**
* POJO to contain the results of {@link ResourceHistoryCalculator#calculateResourceHistoryState(IBaseResource, ResourceEncodingEnum, List)}
*/
public class ResourceHistoryState {
@Nullable
private final String myResourceText;
@Nullable
private final byte[] myResourceBinary;
private final ResourceEncodingEnum myEncoding;
private final HashCode myHashCode;
public ResourceHistoryState(
@Nullable String theResourceText,
@Nullable byte[] theResourceBinary,
ResourceEncodingEnum theEncoding,
HashCode theHashCode) {
myResourceText = theResourceText;
myResourceBinary = theResourceBinary;
myEncoding = theEncoding;
myHashCode = theHashCode;
}
@Nullable
public String getResourceText() {
return myResourceText;
}
@Nullable
public byte[] getResourceBinary() {
return myResourceBinary;
}
public ResourceEncodingEnum getEncoding() {
return myEncoding;
}
public HashCode getHashCode() {
return myHashCode;
}
@Override
public boolean equals(Object theO) {
if (this == theO) {
return true;
}
if (theO == null || getClass() != theO.getClass()) {
return false;
}
ResourceHistoryState that = (ResourceHistoryState) theO;
return Objects.equals(myResourceText, that.myResourceText)
&& Arrays.equals(myResourceBinary, that.myResourceBinary)
&& myEncoding == that.myEncoding
&& Objects.equals(myHashCode, that.myHashCode);
}
@Override
public int hashCode() {
int result = Objects.hash(myResourceText, myEncoding, myHashCode);
result = 31 * result + Arrays.hashCode(myResourceBinary);
return result;
}
@Override
public String toString() {
return new StringJoiner(", ", ResourceHistoryState.class.getSimpleName() + "[", "]")
.add("myResourceText='" + myResourceText + "'")
.add("myResourceBinary=" + Arrays.toString(myResourceBinary))
.add("myEncoding=" + myEncoding)
.add("myHashCode=" + myHashCode)
.toString();
}
}

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@ -627,6 +627,9 @@ public class HapiFhirJpaMigrationTasks extends BaseMigrationTasks<VersionEnum> {
version.executeRawSqls("20230402.1", Map.of(DriverTypeEnum.POSTGRES_9_4, postgresTuningStatements)); version.executeRawSqls("20230402.1", Map.of(DriverTypeEnum.POSTGRES_9_4, postgresTuningStatements));
// Use an unlimited length text column for RES_TEXT_VC // Use an unlimited length text column for RES_TEXT_VC
// N.B. This will FAIL SILENTLY on Oracle due to the fact that Oracle does not support an ALTER TABLE from
// VARCHAR to
// CLOB. Because of failureAllowed() this won't halt the migration
version.onTable("HFJ_RES_VER") version.onTable("HFJ_RES_VER")
.modifyColumn("20230421.1", "RES_TEXT_VC") .modifyColumn("20230421.1", "RES_TEXT_VC")
.nullable() .nullable()

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@ -649,7 +649,13 @@ public class TermReadSvcImpl implements ITermReadSvc, IHasScheduledJobs {
.getMessage(TermReadSvcImpl.class, "valueSetExpandedUsingPreExpansion", expansionTimestamp); .getMessage(TermReadSvcImpl.class, "valueSetExpandedUsingPreExpansion", expansionTimestamp);
theAccumulator.addMessage(msg); theAccumulator.addMessage(msg);
expandConcepts( expandConcepts(
theExpansionOptions, theAccumulator, termValueSet, theFilter, theAdd, theAddedCodes, isOracleDialect()); theExpansionOptions,
theAccumulator,
termValueSet,
theFilter,
theAdd,
theAddedCodes,
myHibernatePropertiesProvider.isOracleDialect());
} }
@Nonnull @Nonnull
@ -664,10 +670,6 @@ public class TermReadSvcImpl implements ITermReadSvc, IHasScheduledJobs {
return expansionTimestamp; return expansionTimestamp;
} }
private boolean isOracleDialect() {
return myHibernatePropertiesProvider.getDialect() instanceof org.hibernate.dialect.OracleDialect;
}
private void expandConcepts( private void expandConcepts(
ValueSetExpansionOptions theExpansionOptions, ValueSetExpansionOptions theExpansionOptions,
IValueSetConceptAccumulator theAccumulator, IValueSetConceptAccumulator theAccumulator,

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@ -0,0 +1,326 @@
package ca.uhn.fhir.jpa.dao;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.model.entity.ResourceEncodingEnum;
import ca.uhn.fhir.jpa.model.entity.ResourceHistoryTable;
import ca.uhn.fhir.jpa.model.entity.ResourceTable;
import com.google.common.hash.HashCode;
import com.google.common.hash.HashFunction;
import com.google.common.hash.Hashing;
import org.hl7.fhir.dstu3.hapi.ctx.FhirDstu3;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.r4.hapi.ctx.FhirR4;
import org.hl7.fhir.r4.model.Patient;
import org.junit.jupiter.params.ParameterizedTest;
import org.junit.jupiter.params.provider.Arguments;
import org.junit.jupiter.params.provider.MethodSource;
import java.nio.charset.StandardCharsets;
import java.time.LocalDate;
import java.time.Month;
import java.time.ZoneId;
import java.util.Arrays;
import java.util.Date;
import java.util.List;
import java.util.stream.Stream;
import static org.junit.jupiter.api.Assertions.assertArrayEquals;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertFalse;
import static org.junit.jupiter.api.Assertions.assertNotNull;
import static org.junit.jupiter.api.Assertions.assertNull;
import static org.junit.jupiter.api.Assertions.assertTrue;
class ResourceHistoryCalculatorTest {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ResourceHistoryCalculatorTest.class);
private static final FhirContext CONTEXT = FhirContext.forR4Cached();
private static final ResourceHistoryCalculator CALCULATOR_ORACLE = new ResourceHistoryCalculator(CONTEXT, true);
private static final ResourceHistoryCalculator CALCULATOR_NON_ORACLE = new ResourceHistoryCalculator(CONTEXT, false);
private static final LocalDate TODAY = LocalDate.of(2024, Month.JANUARY, 25);
private static final String ENCODED_RESOURCE_1 = "1234";
private static final String ENCODED_RESOURCE_2 = "abcd";
private static final String RESOURCE_TEXT_VC = "resourceTextVc";
private static final List<String> EXCLUDED_ELEMENTS_1 = List.of("id");
private static final List<String> EXCLUDED_ELEMENTS_2 = List.of("resourceType", "birthDate");
private static final HashFunction SHA_256 = Hashing.sha256();
private static Stream<Arguments> calculateResourceHistoryStateArguments() {
return Stream.of(
Arguments.of(FhirContext.forDstu3Cached(), true, ResourceEncodingEnum.JSONC, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forDstu3Cached(), false, ResourceEncodingEnum.JSONC, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forDstu3Cached(), true, ResourceEncodingEnum.DEL, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forDstu3Cached(), false, ResourceEncodingEnum.DEL, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forDstu3Cached(), true, ResourceEncodingEnum.ESR, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forDstu3Cached(), false, ResourceEncodingEnum.ESR, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forDstu3Cached(), true, ResourceEncodingEnum.JSON, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forDstu3Cached(), false, ResourceEncodingEnum.JSON, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forR4Cached(), true, ResourceEncodingEnum.JSONC, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forR4Cached(), false, ResourceEncodingEnum.JSONC, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forR4Cached(), true, ResourceEncodingEnum.DEL, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forR4Cached(), false, ResourceEncodingEnum.DEL, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forR4Cached(), true, ResourceEncodingEnum.ESR, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forR4Cached(), false, ResourceEncodingEnum.ESR, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forR4Cached(), true, ResourceEncodingEnum.JSON, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forR4Cached(), false, ResourceEncodingEnum.JSON, EXCLUDED_ELEMENTS_1)
);
}
/**
* The purpose of this test is to ensure that the conditional logic to pre-calculate resource history text or binaries
* is respected.
* If this is for Oracle, the resource text will be driven off a binary with a given encoding with the
* resource text effectively ignored.
* If this is not Oracle, it will be driven off a JSON encoded text field with
* the binary effectively ignored.
*/
@ParameterizedTest
@MethodSource("calculateResourceHistoryStateArguments")
void calculateResourceHistoryState(FhirContext theFhirContext, boolean theIsOracle, ResourceEncodingEnum theResourceEncoding, List<String> theExcludedElements) {
final IBaseResource patient = getPatient(theFhirContext);
final ResourceHistoryCalculator calculator = getCalculator(theFhirContext, theIsOracle);
final ResourceHistoryState result = calculator.calculateResourceHistoryState(patient, theResourceEncoding, theExcludedElements);
if (theIsOracle) {
assertNotNull(result.getResourceBinary()); // On Oracle: We use the resource binary to serve up the resource content
assertNull(result.getResourceText()); // On Oracle: We do NOT use the resource text to serve up the resource content
assertEquals(theResourceEncoding, result.getEncoding()); // On Oracle, the resource encoding is what we used to encode the binary
assertEquals(SHA_256.hashBytes(result.getResourceBinary()), result.getHashCode()); // On Oracle, the SHA 256 hash is of the binary
} else {
assertNull(result.getResourceBinary()); // Non-Oracle: We do NOT use the resource binary to serve up the resource content
assertNotNull(result.getResourceText()); // Non-Oracle: We use the resource text to serve up the resource content
assertEquals(ResourceEncodingEnum.JSON, result.getEncoding()); // Non-Oracle, since we didn't encode a binary this is always JSON.
final HashCode expectedHashCode = SHA_256.hashUnencodedChars(calculator.encodeResource(patient, theResourceEncoding, theExcludedElements)); // Non-Oracle, the SHA 256 hash is of the parsed resource object
assertEquals(expectedHashCode, result.getHashCode());
}
}
private static Stream<Arguments> conditionallyAlterHistoryEntityArguments() {
return Stream.of(
Arguments.of(true, ResourceEncodingEnum.JSONC, ENCODED_RESOURCE_1),
Arguments.of(true, ResourceEncodingEnum.JSONC, ENCODED_RESOURCE_2),
Arguments.of(true, ResourceEncodingEnum.DEL, ENCODED_RESOURCE_1),
Arguments.of(true, ResourceEncodingEnum.DEL, ENCODED_RESOURCE_2),
Arguments.of(true, ResourceEncodingEnum.ESR, ENCODED_RESOURCE_1),
Arguments.of(true, ResourceEncodingEnum.ESR, ENCODED_RESOURCE_2),
Arguments.of(true, ResourceEncodingEnum.JSON, ENCODED_RESOURCE_1),
Arguments.of(true, ResourceEncodingEnum.JSON, ENCODED_RESOURCE_2),
Arguments.of(false, ResourceEncodingEnum.JSONC, ENCODED_RESOURCE_1),
Arguments.of(false, ResourceEncodingEnum.JSONC, ENCODED_RESOURCE_2),
Arguments.of(false, ResourceEncodingEnum.DEL, ENCODED_RESOURCE_1),
Arguments.of(false, ResourceEncodingEnum.DEL, ENCODED_RESOURCE_2),
Arguments.of(false, ResourceEncodingEnum.ESR, ENCODED_RESOURCE_1),
Arguments.of(false, ResourceEncodingEnum.ESR, ENCODED_RESOURCE_2),
Arguments.of(false, ResourceEncodingEnum.JSON, ENCODED_RESOURCE_1),
Arguments.of(false, ResourceEncodingEnum.JSON, ENCODED_RESOURCE_2)
);
}
@ParameterizedTest
@MethodSource("conditionallyAlterHistoryEntityArguments")
void conditionallyAlterHistoryEntity_usesVarcharForOracle(boolean theIsOracle, ResourceEncodingEnum theResourceEncoding, String theResourceText) {
final ResourceTable resourceTable = new ResourceTable();
resourceTable.setId(123L);
final ResourceHistoryTable resourceHistoryTable = new ResourceHistoryTable();
resourceHistoryTable.setVersion(1);
resourceHistoryTable.setResource("resource".getBytes(StandardCharsets.UTF_8));
resourceHistoryTable.setEncoding(theResourceEncoding);
resourceHistoryTable.setResourceTextVc(RESOURCE_TEXT_VC);
final boolean isChanged =
getCalculator(theIsOracle).conditionallyAlterHistoryEntity(resourceTable, resourceHistoryTable, theResourceText);
if (theIsOracle) {
assertFalse(isChanged);
assertNotNull(resourceHistoryTable.getResource());
assertEquals(RESOURCE_TEXT_VC, resourceHistoryTable.getResourceTextVc());
assertEquals(resourceHistoryTable.getEncoding(), resourceHistoryTable.getEncoding());
} else {
assertTrue(isChanged);
assertNull(resourceHistoryTable.getResource());
assertEquals(theResourceText, resourceHistoryTable.getResourceTextVc());
assertEquals(resourceHistoryTable.getEncoding(), ResourceEncodingEnum.JSON);
}
}
private static Stream<Arguments> encodeResourceArguments() {
return Stream.of(
Arguments.of(FhirContext.forDstu3Cached(), ResourceEncodingEnum.JSONC, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forDstu3Cached(), ResourceEncodingEnum.JSONC, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forDstu3Cached(), ResourceEncodingEnum.DEL, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forDstu3Cached(), ResourceEncodingEnum.DEL, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forDstu3Cached(), ResourceEncodingEnum.ESR, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forDstu3Cached(), ResourceEncodingEnum.ESR, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forDstu3Cached(), ResourceEncodingEnum.JSON, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forDstu3Cached(), ResourceEncodingEnum.JSON, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forR4Cached(), ResourceEncodingEnum.JSONC, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forR4Cached(), ResourceEncodingEnum.JSONC, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forR4Cached(), ResourceEncodingEnum.DEL, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forR4Cached(), ResourceEncodingEnum.DEL, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forR4Cached(), ResourceEncodingEnum.ESR, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forR4Cached(), ResourceEncodingEnum.ESR, EXCLUDED_ELEMENTS_2),
Arguments.of(FhirContext.forR4Cached(), ResourceEncodingEnum.JSON, EXCLUDED_ELEMENTS_1),
Arguments.of(FhirContext.forR4Cached(), ResourceEncodingEnum.JSON, EXCLUDED_ELEMENTS_2)
);
}
@ParameterizedTest
@MethodSource("encodeResourceArguments")
void encodeResource_ensureFhirVersionSpecificAndIntendedElementsExcluded(FhirContext theFhirContext, ResourceEncodingEnum theResourceEncoding, List<String> theExcludedElements) {
final IBaseResource patient = getPatient(theFhirContext);
final String encodedResource = getCalculator(theFhirContext, true).encodeResource(patient, theResourceEncoding, theExcludedElements);
final String expectedEncoding =
theResourceEncoding.newParser(theFhirContext).setDontEncodeElements(theExcludedElements).encodeResourceToString(patient);
assertEquals(expectedEncoding, encodedResource);
}
private static Stream<Arguments> getResourceBinaryArguments() {
return Stream.of(
Arguments.of(ResourceEncodingEnum.JSONC, ENCODED_RESOURCE_1),
Arguments.of(ResourceEncodingEnum.JSONC, ENCODED_RESOURCE_2),
Arguments.of(ResourceEncodingEnum.DEL, ENCODED_RESOURCE_1),
Arguments.of(ResourceEncodingEnum.DEL, ENCODED_RESOURCE_2),
Arguments.of(ResourceEncodingEnum.ESR, ENCODED_RESOURCE_1),
Arguments.of(ResourceEncodingEnum.ESR, ENCODED_RESOURCE_2),
Arguments.of(ResourceEncodingEnum.JSON, ENCODED_RESOURCE_1),
Arguments.of(ResourceEncodingEnum.JSON, ENCODED_RESOURCE_2)
);
}
@ParameterizedTest
@MethodSource("getResourceBinaryArguments")
void getResourceBinary(ResourceEncodingEnum theResourceEncoding, String theEncodedResource) {
final byte[] resourceBinary = ResourceHistoryCalculator.getResourceBinary(theResourceEncoding, theEncodedResource);
switch (theResourceEncoding) {
case JSON:
assertArrayEquals(theEncodedResource.getBytes(StandardCharsets.UTF_8), resourceBinary);
break;
case JSONC:
assertArrayEquals(GZipUtil.compress(theEncodedResource), resourceBinary);
break;
case DEL :
case ESR :
default:
assertArrayEquals(new byte[0], resourceBinary);
}
ourLog.info("resourceBinary: {}", resourceBinary);
}
private static Stream<Arguments> isResourceHistoryChangedArguments() {
return Stream.of(
Arguments.of(true, ENCODED_RESOURCE_1.getBytes(StandardCharsets.UTF_8), ENCODED_RESOURCE_1),
Arguments.of(false, ENCODED_RESOURCE_1.getBytes(StandardCharsets.UTF_8), ENCODED_RESOURCE_1),
Arguments.of(true, ENCODED_RESOURCE_2.getBytes(StandardCharsets.UTF_8), ENCODED_RESOURCE_2),
Arguments.of(false, ENCODED_RESOURCE_2.getBytes(StandardCharsets.UTF_8), ENCODED_RESOURCE_2)
);
}
@ParameterizedTest
@MethodSource("isResourceHistoryChangedArguments")
void isResourceHistoryChanged(boolean theIsOracle, byte[] theNewBinary, String theNewResourceText) {
final String existngResourceText = ENCODED_RESOURCE_1;
final byte[] existingBytes = existngResourceText.getBytes(StandardCharsets.UTF_8);
final ResourceHistoryTable resourceHistoryTable = new ResourceHistoryTable();
resourceHistoryTable.setResource(existingBytes);
resourceHistoryTable.setResourceTextVc(existngResourceText);
final boolean isChanged = getCalculator(theIsOracle).isResourceHistoryChanged(resourceHistoryTable, theNewBinary, theNewResourceText);
if (theIsOracle) {
final boolean expectedResult = !Arrays.equals(existingBytes, theNewBinary);
assertEquals(expectedResult, isChanged);
} else {
final boolean expectedResult = ! existngResourceText.equals(theNewResourceText);
assertEquals(expectedResult, isChanged);
}
}
private static Stream<Arguments> populateEncodedResourceArguments() {
return Stream.of(
Arguments.of(true, ResourceEncodingEnum.JSONC, ENCODED_RESOURCE_1),
Arguments.of(false, ResourceEncodingEnum.JSONC, ENCODED_RESOURCE_2),
Arguments.of(true, ResourceEncodingEnum.DEL, ENCODED_RESOURCE_2),
Arguments.of(false, ResourceEncodingEnum.DEL, ENCODED_RESOURCE_1),
Arguments.of(true, ResourceEncodingEnum.ESR, ENCODED_RESOURCE_1),
Arguments.of(false, ResourceEncodingEnum.ESR, ENCODED_RESOURCE_2),
Arguments.of(true, ResourceEncodingEnum.JSON, ENCODED_RESOURCE_2),
Arguments.of(false, ResourceEncodingEnum.JSON, ENCODED_RESOURCE_1),
Arguments.of(true, ResourceEncodingEnum.JSONC, ENCODED_RESOURCE_1),
Arguments.of(false, ResourceEncodingEnum.JSONC, ENCODED_RESOURCE_2),
Arguments.of(true, ResourceEncodingEnum.DEL, ENCODED_RESOURCE_2),
Arguments.of(false, ResourceEncodingEnum.DEL, ENCODED_RESOURCE_1),
Arguments.of(true, ResourceEncodingEnum.ESR, ENCODED_RESOURCE_1),
Arguments.of(false, ResourceEncodingEnum.ESR, ENCODED_RESOURCE_2),
Arguments.of(true, ResourceEncodingEnum.JSON, ENCODED_RESOURCE_2),
Arguments.of(false, ResourceEncodingEnum.JSON, ENCODED_RESOURCE_1)
);
}
@ParameterizedTest
@MethodSource("populateEncodedResourceArguments")
void populateEncodedResource(boolean theIsOracle, ResourceEncodingEnum theResourceEncoding, String theEncodedResourceString) {
final EncodedResource encodedResource = new EncodedResource();
final byte[] resourceBinary = theEncodedResourceString.getBytes(StandardCharsets.UTF_8);
getCalculator(theIsOracle)
.populateEncodedResource(encodedResource, theEncodedResourceString, resourceBinary, theResourceEncoding);
if (theIsOracle) {
assertEquals(resourceBinary, encodedResource.getResourceBinary());
assertNull(encodedResource.getResourceText());
assertEquals(theResourceEncoding, encodedResource.getEncoding());
} else {
assertNull(encodedResource.getResourceBinary());
assertEquals(theEncodedResourceString, encodedResource.getResourceText());
assertEquals(ResourceEncodingEnum.JSON, encodedResource.getEncoding());
}
}
private ResourceHistoryCalculator getCalculator(boolean theIsOracle) {
return theIsOracle ? CALCULATOR_ORACLE : CALCULATOR_NON_ORACLE;
}
private ResourceHistoryCalculator getCalculator(FhirContext theFhirContext, boolean theIsOracle) {
return new ResourceHistoryCalculator(theFhirContext, theIsOracle);
}
private IBaseResource getPatient(FhirContext theFhirContext) {
if (theFhirContext.getVersion() instanceof FhirR4) {
return getPatientR4();
}
if (theFhirContext.getVersion() instanceof FhirDstu3) {
return getPatientDstu3();
}
return null;
}
private org.hl7.fhir.dstu3.model.Patient getPatientDstu3() {
final org.hl7.fhir.dstu3.model.Patient patient = new org.hl7.fhir.dstu3.model.Patient();
patient.setId("123");
patient.setBirthDate(Date.from(TODAY.atStartOfDay(ZoneId.of("America/Toronto")).toInstant()));
return patient;
}
private Patient getPatientR4() {
final Patient patient = new Patient();
patient.setId("123");
patient.setBirthDate(Date.from(TODAY.atStartOfDay(ZoneId.of("America/Toronto")).toInstant()));
return patient;
}
}

View File

@ -32,8 +32,6 @@ import java.io.Serializable;
import java.util.ArrayList; import java.util.ArrayList;
import java.util.Collection; import java.util.Collection;
import static org.apache.commons.lang3.StringUtils.defaultString;
@Entity @Entity
@Table( @Table(
name = ResourceHistoryTable.HFJ_RES_VER, name = ResourceHistoryTable.HFJ_RES_VER,
@ -86,15 +84,12 @@ public class ResourceHistoryTable extends BaseHasResource implements Serializabl
@OneToMany(mappedBy = "myResourceHistory", cascade = CascadeType.ALL, fetch = FetchType.LAZY, orphanRemoval = true) @OneToMany(mappedBy = "myResourceHistory", cascade = CascadeType.ALL, fetch = FetchType.LAZY, orphanRemoval = true)
private Collection<ResourceHistoryTag> myTags; private Collection<ResourceHistoryTag> myTags;
/**
* Note: No setter for this field because it's only a legacy way of storing data now.
*/
@Column(name = "RES_TEXT", length = Integer.MAX_VALUE - 1, nullable = true) @Column(name = "RES_TEXT", length = Integer.MAX_VALUE - 1, nullable = true)
@Lob() @Lob()
@OptimisticLock(excluded = true) @OptimisticLock(excluded = true)
private byte[] myResource; private byte[] myResource;
@Column(name = "RES_TEXT_VC", nullable = true, length = Length.LONG32) @Column(name = "RES_TEXT_VC", length = Length.LONG32, nullable = true)
@OptimisticLock(excluded = true) @OptimisticLock(excluded = true)
private String myResourceTextVc; private String myResourceTextVc;
@ -155,8 +150,7 @@ public class ResourceHistoryTable extends BaseHasResource implements Serializabl
} }
public void setResourceTextVc(String theResourceTextVc) { public void setResourceTextVc(String theResourceTextVc) {
myResource = null; myResourceTextVc = theResourceTextVc;
myResourceTextVc = defaultString(theResourceTextVc);
} }
public ResourceHistoryProvenanceEntity getProvenance() { public ResourceHistoryProvenanceEntity getProvenance() {
@ -212,6 +206,10 @@ public class ResourceHistoryTable extends BaseHasResource implements Serializabl
return myResource; return myResource;
} }
public void setResource(byte[] theResource) {
myResource = theResource;
}
@Override @Override
public Long getResourceId() { public Long getResourceId() {
return myResourceId; return myResourceId;

View File

@ -17,8 +17,10 @@ import ca.uhn.fhir.jpa.cache.ResourceChangeListenerCacheRefresherImpl;
import ca.uhn.fhir.jpa.cache.ResourceChangeListenerRegistryImpl; import ca.uhn.fhir.jpa.cache.ResourceChangeListenerRegistryImpl;
import ca.uhn.fhir.jpa.cache.ResourcePersistentIdMap; import ca.uhn.fhir.jpa.cache.ResourcePersistentIdMap;
import ca.uhn.fhir.jpa.cache.ResourceVersionMap; import ca.uhn.fhir.jpa.cache.ResourceVersionMap;
import ca.uhn.fhir.jpa.config.HibernatePropertiesProvider;
import ca.uhn.fhir.jpa.dao.IJpaStorageResourceParser; import ca.uhn.fhir.jpa.dao.IJpaStorageResourceParser;
import ca.uhn.fhir.jpa.dao.JpaResourceDao; import ca.uhn.fhir.jpa.dao.JpaResourceDao;
import ca.uhn.fhir.jpa.dao.ResourceHistoryCalculator;
import ca.uhn.fhir.jpa.dao.TransactionProcessor; import ca.uhn.fhir.jpa.dao.TransactionProcessor;
import ca.uhn.fhir.jpa.dao.data.IResourceHistoryTableDao; import ca.uhn.fhir.jpa.dao.data.IResourceHistoryTableDao;
import ca.uhn.fhir.jpa.dao.index.DaoSearchParamSynchronizer; import ca.uhn.fhir.jpa.dao.index.DaoSearchParamSynchronizer;
@ -148,6 +150,7 @@ public class GiantTransactionPerfTest {
private IIdHelperService myIdHelperService; private IIdHelperService myIdHelperService;
@Mock @Mock
private IJpaStorageResourceParser myJpaStorageResourceParser; private IJpaStorageResourceParser myJpaStorageResourceParser;
private final ResourceHistoryCalculator myResourceHistoryCalculator = new ResourceHistoryCalculator(FhirContext.forR4Cached(), false);
private IMetaTagSorter myMetaTagSorter; private IMetaTagSorter myMetaTagSorter;
@AfterEach @AfterEach
@ -271,6 +274,7 @@ public class GiantTransactionPerfTest {
myEobDao.setJpaStorageResourceParserForUnitTest(myJpaStorageResourceParser); myEobDao.setJpaStorageResourceParserForUnitTest(myJpaStorageResourceParser);
myEobDao.setExternallyStoredResourceServiceRegistryForUnitTest(new ExternallyStoredResourceServiceRegistry()); myEobDao.setExternallyStoredResourceServiceRegistryForUnitTest(new ExternallyStoredResourceServiceRegistry());
myEobDao.setMyMetaTagSorter(myMetaTagSorter); myEobDao.setMyMetaTagSorter(myMetaTagSorter);
myEobDao.setResourceHistoryCalculator(myResourceHistoryCalculator);
myEobDao.start(); myEobDao.start();
myDaoRegistry.setResourceDaos(Lists.newArrayList(myEobDao)); myDaoRegistry.setResourceDaos(Lists.newArrayList(myEobDao));