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Suspend tx when refreshing version cache (#5671) 

* Suspend tx when refreshing version cache
* Undo refactor to reduce merge size
* changelog
* Bump to 7.1.3
* Fix version test
* Unwrap transaction proxy
This commit is contained in:
Michael Buckley 2024-02-08 14:01:39 -05:00 committed by GitHub
parent a7eceda5d7
commit d71736bf9d
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
84 changed files with 120 additions and 85 deletions
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2
hapi-deployable-pom/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-android/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-base/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-base/src/test/java/ca/uhn/fhir/util/VersionEnumTest.java
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@ -29,7 +29,7 @@ public class VersionEnumTest {
int minor = Integer.parseInt(parts[1]);
int patch = Integer.parseInt(parts[2]);
if ((major == 6 && minor >= 3) || major > 6 ) {
if ((major == 6 && minor >= 3) || (major >= 7)) {
if (minor % 2 == 1) {
patch = 0;
}

4
hapi-fhir-bom/pom.xml
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@ -4,7 +4,7 @@
<modelVersion>4.0.0</modelVersion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-bom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<packaging>pom</packaging>
<name>HAPI FHIR BOM</name>
@ -12,7 +12,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-checkstyle/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-cli/hapi-fhir-cli-api/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-cli/hapi-fhir-cli-app/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-cli</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-cli/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-client-okhttp/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-client/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-converter/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-dist/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-docs/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

4
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/7_2_0/5671-tx-tangle.yaml Normal file
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@ -0,0 +1,4 @@
---
type: fix
issue: 5671
title: "Avoid lock contention by refreshing SearchParameter cache in a new transaction."

2
hapi-fhir-jacoco/pom.xml
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@ -11,7 +11,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jaxrsserver-base/pom.xml
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@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpa/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-base/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-elastic-test-utilities/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-hfql/pom.xml
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@ -3,7 +3,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-ips/pom.xml
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@ -3,7 +3,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-mdm/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-model/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-searchparam/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

10
hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/cache/IResourceChangeListenerCacheRefresher.java vendored
View File

@ -19,6 +19,10 @@
*/
package ca.uhn.fhir.jpa.cache;
import org.springframework.context.event.ContextClosedEvent;
import org.springframework.context.event.ContextRefreshedEvent;
import org.springframework.context.event.EventListener;
/**
* This is an internal service and is not intended to be used outside this package. Implementers should only directly
* call the {@link IResourceChangeListenerRegistry}.
@ -40,4 +44,10 @@ public interface IResourceChangeListenerCacheRefresher {
* @return the number of resources that have been created, updated and deleted since the last time the cache was refreshed
*/
ResourceChangeResult refreshCacheAndNotifyListener(IResourceChangeListenerCache theEntry);
@EventListener(ContextRefreshedEvent.class)
public void start();
@EventListener(ContextClosedEvent.class)
public void shutdown();
}

10
hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/cache/ResourceChangeListenerCacheRefresherImpl.java vendored
View File

@ -25,6 +25,7 @@ import ca.uhn.fhir.jpa.model.sched.ISchedulerService;
import ca.uhn.fhir.jpa.model.sched.ScheduledJobDefinition;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import com.google.common.annotations.VisibleForTesting;
import jakarta.transaction.Transactional;
import org.apache.commons.lang3.time.DateUtils;
import org.hl7.fhir.instance.model.api.IIdType;
import org.quartz.JobExecutionContext;
@ -57,7 +58,7 @@ public class ResourceChangeListenerCacheRefresherImpl
/**
* All cache entries are checked at this interval to see if they need to be refreshed
*/
static long LOCAL_REFRESH_INTERVAL_MS = 10 * DateUtils.MILLIS_PER_SECOND;
static final long LOCAL_REFRESH_INTERVAL_MS = 10 * DateUtils.MILLIS_PER_SECOND;
@Autowired
private IResourceVersionSvc myResourceVersionSvc;
@ -133,8 +134,12 @@ public class ResourceChangeListenerCacheRefresherImpl
}
@Override
// Suspend any current transaction while we sync with the db.
// This avoids lock conflicts while reading the resource versions.
@Transactional(Transactional.TxType.NOT_SUPPORTED)
public ResourceChangeResult refreshCacheAndNotifyListener(IResourceChangeListenerCache theCache) {
ResourceChangeResult retVal = new ResourceChangeResult();
if (isStopping()) {
ourLog.info("Context is stopping, aborting cache refresh");
return retVal;
@ -146,6 +151,7 @@ public class ResourceChangeListenerCacheRefresherImpl
SearchParameterMap searchParamMap = theCache.getSearchParameterMap();
ResourceVersionMap newResourceVersionMap =
myResourceVersionSvc.getVersionMap(theCache.getResourceName(), searchParamMap);
retVal = retVal.plus(notifyListener(theCache, newResourceVersionMap));
return retVal;
@ -154,7 +160,7 @@ public class ResourceChangeListenerCacheRefresherImpl
/**
* Notify a listener with all matching resources if it hasn't been initialized yet, otherwise only notify it if
* any resources have changed
* @param theCache
* @param theCache the target
* @param theNewResourceVersionMap the measured new resources
* @return the list of created, updated and deleted ids
*/

2
hapi-fhir-jpaserver-subscription/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-test-dstu2/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-test-dstu3/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-test-r4/pom.xml
View File

@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

8
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/cache/ResourceChangeListenerRegistryImplIT.java vendored
View File

@ -7,6 +7,7 @@ import ca.uhn.fhir.jpa.test.BaseJpaR4Test;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.param.DateRangeParam;
import ca.uhn.fhir.rest.param.TokenParam;
import ca.uhn.fhir.test.utilities.ProxyUtil;
import ca.uhn.test.concurrency.IPointcutLatch;
import ca.uhn.test.concurrency.PointcutLatch;
import org.apache.commons.lang3.time.DateUtils;
@ -36,7 +37,7 @@ public class ResourceChangeListenerRegistryImplIT extends BaseJpaR4Test {
@Autowired
ResourceChangeListenerRegistryImpl myResourceChangeListenerRegistry;
@Autowired
ResourceChangeListenerCacheRefresherImpl myResourceChangeListenerCacheRefresher;
IResourceChangeListenerCacheRefresher myResourceChangeListenerCacheRefresher;
private final static String RESOURCE_NAME = "Patient";
private TestCallback myMaleTestCallback = new TestCallback("MALE");
@ -130,9 +131,10 @@ public class ResourceChangeListenerRegistryImplIT extends BaseJpaR4Test {
return patient;
}
private IdDt createPatientAndRefreshCache(Patient thePatient, TestCallback theTestCallback, long theExpectedCount) throws InterruptedException {
private IdDt createPatientAndRefreshCache(Patient thePatient, TestCallback theTestCallback, long theExpectedCount) {
IIdType retval = myPatientDao.create(thePatient).getId();
ResourceChangeResult result = myResourceChangeListenerCacheRefresher.forceRefreshAllCachesForUnitTest();
ResourceChangeResult result = ProxyUtil.getSingletonTarget(myResourceChangeListenerCacheRefresher, ResourceChangeListenerCacheRefresherImpl.class)
.forceRefreshAllCachesForUnitTest();
assertResult(result, theExpectedCount, 0, 0);
return new IdDt(retval);
}

2
hapi-fhir-jpaserver-test-r4b/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-test-r5/pom.xml
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@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-test-utilities/pom.xml
View File

@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-uhnfhirtest/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-server-cds-hooks/pom.xml
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@ -7,7 +7,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-server-mdm/pom.xml
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@ -7,7 +7,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-server-openapi/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-server/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-serviceloaders/hapi-fhir-caching-api/pom.xml
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@ -7,7 +7,7 @@
<parent>
<artifactId>hapi-fhir-serviceloaders</artifactId>
<groupId>ca.uhn.hapi.fhir</groupId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

4
hapi-fhir-serviceloaders/hapi-fhir-caching-caffeine/pom.xml
View File

@ -7,7 +7,7 @@
<parent>
<artifactId>hapi-fhir-serviceloaders</artifactId>
<groupId>ca.uhn.hapi.fhir</groupId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
@ -21,7 +21,7 @@
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-caching-api</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
</dependency>
<dependency>

2
hapi-fhir-serviceloaders/hapi-fhir-caching-guava/pom.xml
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@ -7,7 +7,7 @@
<parent>
<artifactId>hapi-fhir-serviceloaders</artifactId>
<groupId>ca.uhn.hapi.fhir</groupId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-serviceloaders/hapi-fhir-caching-testing/pom.xml
View File

@ -7,7 +7,7 @@
<parent>
<artifactId>hapi-fhir</artifactId>
<groupId>ca.uhn.hapi.fhir</groupId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../../pom.xml</relativePath>
</parent>

2
hapi-fhir-serviceloaders/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<artifactId>hapi-deployable-pom</artifactId>
<groupId>ca.uhn.hapi.fhir</groupId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-autoconfigure/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-client-apache/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
</parent>
<artifactId>hapi-fhir-spring-boot-sample-client-apache</artifactId>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-client-okhttp/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
</parent>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-server-jersey/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
</parent>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-spring-boot</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
</parent>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-starter/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-spring-boot/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-sql-migrate/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage-batch2-jobs/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage-batch2-test-utilities/pom.xml
View File

@ -7,7 +7,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage-batch2/pom.xml
View File

@ -7,7 +7,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage-cr/pom.xml
View File

@ -7,7 +7,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage-mdm/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage-test-utilities/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

4
hapi-fhir-storage/src/main/java/ca/uhn/fhir/jpa/dao/tx/HapiTransactionService.java
View File

@ -247,6 +247,7 @@ public class HapiTransactionService implements IHapiTransactionService {
ourRequestPartitionThreadLocal.set(requestPartitionId);
}
ourLog.trace("Starting doExecute for RequestPartitionId {}", requestPartitionId);
if (!myPartitionSettings.isPartitioningEnabled()
|| Objects.equals(previousRequestPartitionId, requestPartitionId)) {
if (ourExistingTransaction.get() == this && canReuseExistingTransaction(theExecutionBuilder)) {
@ -281,6 +282,7 @@ public class HapiTransactionService implements IHapiTransactionService {
TransactionCallback<T> theCallback,
RequestPartitionId requestPartitionId,
RequestPartitionId previousRequestPartitionId) {
ourLog.trace("executeInNewTransactionForPartitionChange");
theExecutionBuilder.myPropagation = myTransactionPropagationWhenChangingPartitions;
return doExecuteInTransaction(theExecutionBuilder, theCallback, requestPartitionId, previousRequestPartitionId);
}
@ -310,6 +312,7 @@ public class HapiTransactionService implements IHapiTransactionService {
TransactionCallback<T> theCallback,
RequestPartitionId requestPartitionId,
RequestPartitionId previousRequestPartitionId) {
ourLog.trace("doExecuteInTransaction");
try {
for (int i = 0; ; i++) {
try {
@ -569,6 +572,7 @@ public class HapiTransactionService implements IHapiTransactionService {
@Nullable
private static <T> T executeInExistingTransaction(@Nonnull TransactionCallback<T> theCallback) {
ourLog.trace("executeInExistingTransaction");
// TODO we could probably track the TransactionStatus we need as a thread local like we do our partition id.
return theCallback.doInTransaction(null);
}

9
hapi-fhir-storage/src/main/java/ca/uhn/fhir/jpa/searchparam/submit/interceptor/SearchParamValidatingInterceptor.java
View File

@ -55,6 +55,7 @@ import static org.apache.commons.lang3.StringUtils.isNotBlank;
public class SearchParamValidatingInterceptor {
public static final String SEARCH_PARAM = "SearchParameter";
public static final String SKIP_VALIDATION = SearchParamValidatingInterceptor.class.getName() + ".SKIP_VALIDATION";
private FhirContext myFhirContext;
@ -79,6 +80,14 @@ public class SearchParamValidatingInterceptor {
if (isNotSearchParameterResource(theResource)) {
return;
}
// avoid a loop when loading our hard-coded core FhirContext SearchParameters
boolean isStartup = theRequestDetails != null
&& Boolean.TRUE == theRequestDetails.getUserData().get(SKIP_VALIDATION);
if (isStartup) {
return;
}
RuntimeSearchParam runtimeSearchParam = mySearchParameterCanonicalizer.canonicalizeSearchParameter(theResource);
if (runtimeSearchParam == null) {
return;

2
hapi-fhir-structures-dstu2.1/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-dstu2/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-dstu3/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-hl7org-dstu2/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-r4/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-r4b/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-r5/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-test-utilities/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-testpage-overlay/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-dstu2.1/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-dstu2/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-dstu3/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-r4/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-r4b/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-r5/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-tinder-plugin/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-tinder-test/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
pom.xml
View File

@ -9,7 +9,7 @@
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<packaging>pom</packaging>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<name>HAPI-FHIR</name>
<description>An open-source implementation of the FHIR specification in Java.</description>

2
tests/hapi-fhir-base-test-jaxrsserver-kotlin/pom.xml
View File

@ -7,7 +7,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../../pom.xml</relativePath>
</parent>

2
tests/hapi-fhir-base-test-mindeps-client/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../../pom.xml</relativePath>
</parent>

2
tests/hapi-fhir-base-test-mindeps-server/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.1.1-SNAPSHOT</version>
<version>7.1.3-SNAPSHOT</version>
<relativePath>../../pom.xml</relativePath>
</parent>