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Consolidate all System Properties into a single class (#4252) 

* started converting System.setProperty to HapiSystem

* added a couple more.  renamed class

* all the setProperty calls done

* finished System.getProperty()

* Split HapiSystemProperties into HapiSystemProperties and HapiTestSystemProperties

* Javadoc

* Javadoc

* review feedback

Co-authored-by: Ken Stevens <ken@smilecdr.com>
This commit is contained in:
Ken Stevens 2022-11-14 13:51:03 -05:00 committed by GitHub
parent 80f1514b31
commit d8d8c5fa44
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GPG Key ID: 4AEE18F83AFDEB23
128 changed files with 425 additions and 336 deletions
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39
hapi-fhir-android/src/test/java/ca/uhn/fhir/android/BuiltJarDstu2IT.java
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@ -1,37 +1,42 @@
package ca.uhn.fhir.android;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.fail;
import java.io.File;
import java.util.*;
import java.util.zip.ZipEntry;
import java.util.zip.ZipFile;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.model.dstu2.composite.QuantityDt;
import ca.uhn.fhir.model.dstu2.resource.Conformance;
import ca.uhn.fhir.model.dstu2.resource.Observation;
import ca.uhn.fhir.model.dstu2.resource.Patient;
import ca.uhn.fhir.rest.client.api.IGenericClient;
import ca.uhn.fhir.rest.client.exceptions.FhirClientConnectionException;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.filefilter.WildcardFileFilter;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu2.composite.QuantityDt;
import ca.uhn.fhir.model.dstu2.resource.*;
import ca.uhn.fhir.rest.client.api.IGenericClient;
import ca.uhn.fhir.rest.client.exceptions.FhirClientConnectionException;
import java.io.File;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Enumeration;
import java.util.HashSet;
import java.util.Set;
import java.util.TreeSet;
import java.util.zip.ZipEntry;
import java.util.zip.ZipFile;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.fail;
public class BuiltJarDstu2IT {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(BuiltJarDstu2IT.class);
@BeforeAll
public static void beforeClass() {
System.setProperty("javax.xml.stream.XMLInputFactory", "FOO");
System.setProperty("javax.xml.stream.XMLOutputFactory", "FOO");
System.setProperty(javax.xml.stream.XMLInputFactory.class.getName(), "FOO");
System.setProperty(javax.xml.stream.XMLOutputFactory.class.getName(), "FOO");
}
@Test
public void testParserXml() throws Exception {
public void testParserXml() {
FhirContext ctx = FhirContext.forDstu2();

6
hapi-fhir-android/src/test/java/ca/uhn/fhir/android/client/GenericClientDstu3IT.java
View File

@ -303,9 +303,9 @@ public class GenericClientDstu3IT {
public static void beforeClass() {
// // Force StAX to fail like it will on android
// System.setProperty("javax.xml.stream.XMLInputFactory", "FOO");
// System.setProperty("javax.xml.stream.XMLOutputFactory", "FOO");
// System.setProperty(javax.xml.stream.XMLInputFactory.class.getName(), "FOO");
// System.setProperty(javax.xml.stream.XMLOutputFactory.class.getName(), "FOO");
ourCtx = FhirContext.forDstu3();
}
}

3
hapi-fhir-base/src/main/java/ca/uhn/fhir/context/FhirContext.java
View File

@ -24,6 +24,7 @@ import ca.uhn.fhir.rest.client.api.IBasicClient;
import ca.uhn.fhir.rest.client.api.IGenericClient;
import ca.uhn.fhir.rest.client.api.IRestfulClient;
import ca.uhn.fhir.rest.client.api.IRestfulClientFactory;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.util.FhirTerser;
import ca.uhn.fhir.util.ReflectionUtil;
import ca.uhn.fhir.util.VersionUtil;
@ -203,7 +204,7 @@ public class FhirContext {
ourLog.info("Creating new FhirContext with auto-detected version [{}]. It is recommended to explicitly select a version for future compatibility by invoking FhirContext.forDstuX()",
myVersion.getVersion().name());
} else {
if ("true".equals(System.getProperty("unit_test_mode"))) {
if (HapiSystemProperties.isUnitTestModeEnabled()) {
String calledAt = ExceptionUtils.getStackFrames(new Throwable())[4];
ourLog.info("Creating new FHIR context for FHIR version [{}]{}", myVersion.getVersion().name(), calledAt);
} else {

4
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java
View File

@ -256,10 +256,6 @@ public class Constants {
public static final Charset CHARSET_US_ASCII;
public static final String PARAM_PAGEID = "_pageId";
public static final String JAVA_VALIDATOR_DETAILS_SYSTEM = "http://hl7.org/fhir/java-core-messageId";
/**
* This is provided for testing only! Use with caution as this property may change.
*/
public static final String TEST_SYSTEM_PROP_VALIDATION_RESOURCE_CACHES_MS = "TEST_SYSTEM_PROP_VALIDATION_RESOURCE_CACHES_MS";
public static final String PARAM_SEARCH_TOTAL_MODE = "_total";
public static final String CAPABILITYSTATEMENT_WEBSOCKET_URL = "http://hl7.org/fhir/StructureDefinition/capabilitystatement-websocket";
public static final String PARAMETER_CASCADE_DELETE = "_cascade";

140
hapi-fhir-base/src/main/java/ca/uhn/fhir/system/HapiSystemProperties.java Normal file
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@ -0,0 +1,140 @@
package ca.uhn.fhir.system;
import org.apache.commons.lang3.time.DateUtils;
public final class HapiSystemProperties {
private static final String SUPPRESS_HAPI_FHIR_VERSION_LOG = "suppress_hapi_fhir_version_log";
private static final String DISABLE_STATUS_BASED_REINDEX = "disable_status_based_reindex";
/**
* This is provided for testing only! Use with caution as this property may change.
*/
private static final String TEST_SYSTEM_PROP_VALIDATION_RESOURCE_CACHES_MS = "TEST_SYSTEM_PROP_VALIDATION_RESOURCE_CACHES_MS";
private static final String UNIT_TEST_CAPTURE_STACK = "unit_test_capture_stack";
private static final String STACKFILTER_PATTERN_PROP = "log.stackfilter.pattern";
private static final String HAPI_CLIENT_KEEPRESPONSES = "hapi.client.keepresponses";
private static final String TEST_MODE = "test";
private static final String UNIT_TEST_MODE = "unit_test_mode";
private static final long DEFAULT_TEST_SYSTEM_PROP_VALIDATION_RESOURCE_CACHES_MS = 10 * DateUtils.MILLIS_PER_SECOND;
private HapiSystemProperties() {
}
/**
* This property is used by unit tests - do not rely on it in production code
* as it may change at any time. If you want to capture responses in a reliable
* way in your own code, just use client interceptors
*/
public static void enableHapiClientKeepResponses() {
System.setProperty(HAPI_CLIENT_KEEPRESPONSES, "true");
}
public static void disableHapiClientKeepResponses() {
System.clearProperty(HAPI_CLIENT_KEEPRESPONSES);
}
/**
* This property is used by unit tests - do not rely on it in production code
* as it may change at any time. If you want to capture responses in a reliable
* way in your own code, just use client interceptors
*/
public static boolean isHapiClientKeepResponsesEnabled() {
return ("true".equals(System.getProperty(HAPI_CLIENT_KEEPRESPONSES)));
}
/**
* This property gets used in the logback.xml file.
* It causes logged stack traces to skip a number of packages that are
* just noise.
*/
public static void setStackFilterPattern(String thePattern) {
System.setProperty(STACKFILTER_PATTERN_PROP, thePattern);
}
/**
* Set the validation resource cache expireAfterWrite timeout in milliseconds
*
* @param theMillis
*/
public static void setTestValidationResourceCachesMs(long theMillis) {
System.setProperty(TEST_SYSTEM_PROP_VALIDATION_RESOURCE_CACHES_MS, "" + theMillis);
}
/**
* Get the validation resource cache expireAfterWrite timeout in milliseconds. If it has not been set, the default
* value is 10 seconds.
*/
public static long getTestValidationResourceCachesMs() {
String property = System.getProperty(TEST_SYSTEM_PROP_VALIDATION_RESOURCE_CACHES_MS);
if (property == null) {
return DEFAULT_TEST_SYSTEM_PROP_VALIDATION_RESOURCE_CACHES_MS;
}
return Long.parseLong(property);
}
/**
* When this property is primarily used to control application shutdown behavior
*/
public static void enableTestMode() {
System.setProperty(TEST_MODE, "true");
}
public static boolean isTestModeEnabled() {
return "true".equals(System.getProperty(TEST_MODE));
}
/**
* This property is used to ensure unit test behaviour is deterministic. It is also used to add extra logging for unit tests.
*/
public static void enableUnitTestMode() {
System.setProperty(UNIT_TEST_MODE, "true");
}
public static boolean isUnitTestModeEnabled() {
return "true".equals(System.getProperty(UNIT_TEST_MODE));
}
/**
* This property prevents stack traces from getting truncated and includes the full stack trace in failed search responses.
*/
public static void enableUnitTestCaptureStack() {
System.setProperty(UNIT_TEST_CAPTURE_STACK, "true");
}
public static void disableUnitTestCaptureStack() {
System.clearProperty(HapiSystemProperties.UNIT_TEST_CAPTURE_STACK);
}
public static boolean isUnitTestCaptureStackEnabled() {
return "true".equals(System.getProperty(HapiSystemProperties.UNIT_TEST_CAPTURE_STACK));
}
public static boolean isDisableStatusBasedReindex() {
return "true".equals(System.getProperty(DISABLE_STATUS_BASED_REINDEX));
}
public static void disableStatusBasedReindex() {
System.setProperty(DISABLE_STATUS_BASED_REINDEX, "true");
}
/**
* This property sets {@link DaoConfig#setStatusBasedReindexingDisabled(Boolean)} to true when the system starts up.
*/
public static void enableStatusBasedReindex() {
System.clearProperty(DISABLE_STATUS_BASED_REINDEX);
}
/**
* This property is used to suppress the logging of the HAPI FHIR version on startup.
*/
// TODO KHS use this in cdr
public static void enableSuppressHapiFhirVersionLog() {
System.setProperty(SUPPRESS_HAPI_FHIR_VERSION_LOG, "true");
}
public static boolean isSuppressHapiFhirVersionLogEnabled() {
return "true".equals(System.getProperty(SUPPRESS_HAPI_FHIR_VERSION_LOG));
}
}

1
hapi-fhir-base/src/main/java/ca/uhn/fhir/util/DatatypeUtil.java
View File

@ -22,7 +22,6 @@ package ca.uhn.fhir.util;
import org.hl7.fhir.instance.model.api.IPrimitiveType;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;

3
hapi-fhir-base/src/main/java/ca/uhn/fhir/util/TimeoutManager.java
View File

@ -21,6 +21,7 @@ package ca.uhn.fhir.util;
*/
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.system.HapiSystemProperties;
import com.google.common.annotations.VisibleForTesting;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -56,7 +57,7 @@ public class TimeoutManager {
retval = true;
}
if (myStopWatch.getMillis() > myErrorTimeout.toMillis() && !errored) {
if ("true".equalsIgnoreCase(System.getProperty("unit_test_mode"))) {
if (HapiSystemProperties.isUnitTestModeEnabled()) {
throw new TimeoutException(Msg.code(2133) + myServiceName + " timed out after running for " + myStopWatch);
} else {
ourLog.error(myServiceName + " has run for {}", myStopWatch);

3
hapi-fhir-base/src/main/java/ca/uhn/fhir/util/VersionUtil.java
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@ -20,6 +20,7 @@ package ca.uhn.fhir.util;
* #L%
*/
import ca.uhn.fhir.system.HapiSystemProperties;
import org.apache.commons.lang3.StringUtils;
import java.io.InputStream;
@ -75,7 +76,7 @@ public class VersionUtil {
ourBuildNumber = StringUtils.left(p.getProperty("hapifhir.buildnumber"), 10);
ourBuildTime = p.getProperty("hapifhir.timestamp");
if (System.getProperty("suppress_hapi_fhir_version_log") == null) {
if (!HapiSystemProperties.isSuppressHapiFhirVersionLogEnabled()) {
String buildNumber = ourBuildNumber;
if (isSnapshot()) {
buildNumber = buildNumber + "/" + getBuildDate();

6
hapi-fhir-base/src/main/java/ca/uhn/fhir/util/XmlUtil.java
View File

@ -20,8 +20,8 @@ package ca.uhn.fhir.util;
* #L%
*/
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.model.primitive.XhtmlDt;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.util.jar.DependencyLogFactory;
@ -1614,7 +1614,7 @@ public class XmlUtil {
try {
// Detect if we're running with the Android lib, and force repackaged Woodstox to be used
Class.forName("ca.uhn.fhir.repackage.javax.xml.stream.XMLOutputFactory");
System.setProperty("javax.xml.stream.XMLOutputFactory", "com.ctc.wstx.stax.WstxOutputFactory");
System.setProperty(javax.xml.stream.XMLOutputFactory.class.getName(), com.ctc.wstx.stax.WstxOutputFactory.class.getName());
} catch (ClassNotFoundException e) {
// ok
}
@ -1708,7 +1708,7 @@ public class XmlUtil {
try {
// Detect if we're running with the Android lib, and force repackaged Woodstox to be used
Class.forName("ca.uhn.fhir.repackage.javax.xml.stream.XMLInputFactory");
System.setProperty("javax.xml.stream.XMLInputFactory", "com.ctc.wstx.stax.WstxInputFactory");
System.setProperty(javax.xml.stream.XMLInputFactory.class.getName(), com.ctc.wstx.stax.WstxInputFactory.class.getName());
} catch (ClassNotFoundException e) {
// ok
}

3
hapi-fhir-base/src/test/java/ca/uhn/fhir/util/TimeoutManagerTest.java
View File

@ -1,5 +1,6 @@
package ca.uhn.fhir.util;
import ca.uhn.fhir.system.HapiSystemProperties;
import ch.qos.logback.classic.Level;
import ch.qos.logback.classic.spi.ILoggingEvent;
import ch.qos.logback.core.Appender;
@ -101,7 +102,7 @@ class TimeoutManagerTest {
@Test
public void checkTimeout_errorThreadholdHitInUnitTest_throwsException() {
// setup
System.setProperty("unit_test_mode", "true");
HapiSystemProperties.enableUnitTestMode();
mySvc.addTimeForUnitTest(Duration.ofDays(20));
// execute
try {

12
hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/BaseApp.java
View File

@ -21,6 +21,7 @@ package ca.uhn.fhir.cli;
*/
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.util.VersionUtil;
import com.helger.commons.io.file.FileHelper;
import org.apache.commons.cli.CommandLine;
@ -51,12 +52,11 @@ public abstract class BaseApp {
protected static final org.slf4j.Logger ourLog;
static final String LINESEP = System.getProperty("line.separator");
private static final String STACKFILTER_PATTERN = "%xEx{full, sun.reflect, org.junit, org.eclipse, java.lang.reflect.Method, org.springframework, org.hibernate, com.sun.proxy, org.attoparser, org.thymeleaf}";
private static final String STACKFILTER_PATTERN_PROP = "log.stackfilter.pattern";
private static List<BaseCommand> ourCommands;
private static boolean ourDebugMode;
static {
System.setProperty(STACKFILTER_PATTERN_PROP, STACKFILTER_PATTERN);
HapiSystemProperties.setStackFilterPattern(STACKFILTER_PATTERN);
LogbackUtil.loggingConfigOff();
// We don't use qualified names for loggers in CLI
@ -262,12 +262,12 @@ public abstract class BaseApp {
myShutdownHookHasNotRun = true;
runCleanupHookAndUnregister();
if (!"true".equals(System.getProperty("test"))) {
if (!HapiSystemProperties.isTestModeEnabled()) {
System.exit(0);
}
} catch (ParseException e) {
if (!"true".equals(System.getProperty("test"))) {
if (!HapiSystemProperties.isTestModeEnabled()) {
LogbackUtil.loggingConfigOff();
}
System.err.println("Invalid command options for command: " + command.getCommandName());
@ -322,7 +322,7 @@ public abstract class BaseApp {
private void exitDueToProblem(String theDescription) {
if ("true".equals(System.getProperty("test"))) {
if (HapiSystemProperties.isTestModeEnabled()) {
throw new Error(Msg.code(1556) + theDescription);
} else {
System.exit(1);
@ -330,7 +330,7 @@ public abstract class BaseApp {
}
private void exitDueToException(Throwable e) {
if ("true".equals(System.getProperty("test"))) {
if (HapiSystemProperties.isTestModeEnabled()) {
if (e instanceof CommandFailureException) {
throw (CommandFailureException) e;
}

14
hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/RunServerCommand.java
View File

@ -39,13 +39,17 @@ import org.springframework.web.context.support.AnnotationConfigWebApplicationCon
import javax.servlet.ServletContextEvent;
import javax.servlet.ServletContextListener;
import java.io.*;
import java.io.BufferedOutputStream;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.OutputStream;
import java.net.SocketException;
public class RunServerCommand extends BaseCommand {
private static final String OPTION_DISABLE_REFERENTIAL_INTEGRITY = "disable-referential-integrity";
private static final String OPTION_LOWMEM = "lowmem";
private static final String OPTION_ALLOW_EXTERNAL_REFS = "allow-external-refs";
private static final String OPTION_REUSE_SEARCH_RESULTS_MILLIS = "reuse-search-results-milliseconds";
private static final int DEFAULT_PORT = 8080;
@ -68,7 +72,6 @@ public class RunServerCommand extends BaseCommand {
Options options = new Options();
addFhirVersionOption(options);
options.addOption(OPTION_P, "port", true, "The port to listen on (default is " + DEFAULT_PORT + ")");
options.addOption(null, OPTION_LOWMEM, false, "If this flag is set, the server will operate in low memory mode (some features disabled)");
options.addOption(null, OPTION_ALLOW_EXTERNAL_REFS, false, "If this flag is set, the server will allow resources to be persisted contaning external resource references");
options.addOption(null, OPTION_DISABLE_REFERENTIAL_INTEGRITY, false, "If this flag is set, the server will not enforce referential integrity");
@ -94,11 +97,6 @@ public class RunServerCommand extends BaseCommand {
myPort = parseOptionInteger(theCommandLine, OPTION_P, DEFAULT_PORT);
if (theCommandLine.hasOption(OPTION_LOWMEM)) {
ourLog.info("Running in low memory mode, some features disabled");
System.setProperty(OPTION_LOWMEM, OPTION_LOWMEM);
}
if (theCommandLine.hasOption(OPTION_ALLOW_EXTERNAL_REFS)) {
ourLog.info("Server is configured to allow external references");
ContextHolder.setAllowExternalRefs(true);

3
hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/UploadTerminologyCommand.java
View File

@ -28,6 +28,7 @@ import ca.uhn.fhir.rest.api.EncodingEnum;
import ca.uhn.fhir.rest.client.api.IGenericClient;
import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
import ca.uhn.fhir.rest.server.exceptions.BaseServerResponseException;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.util.AttachmentUtil;
import ca.uhn.fhir.util.FileUtil;
import ca.uhn.fhir.util.ParametersUtil;
@ -215,7 +216,7 @@ public class UploadTerminologyCommand extends BaseRequestGeneratingCommand {
ourLog.info("Beginning upload - This may take a while...");
if (ourLog.isDebugEnabled() || "true".equals(System.getProperty("test"))) {
if (ourLog.isDebugEnabled() || HapiSystemProperties.isTestModeEnabled()) {
ourLog.info("Submitting parameters: {}", myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(inputParameters));
}

3
hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/BulkImportCommandIT.java
View File

@ -10,6 +10,7 @@ import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.batch.models.Batch2JobStartResponse;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.test.utilities.HttpClientExtension;
import ca.uhn.fhir.test.utilities.server.RestfulServerExtension;
import org.apache.commons.io.FileUtils;
@ -56,7 +57,7 @@ public class BulkImportCommandIT {
private static final Logger ourLog = LoggerFactory.getLogger(BulkImportCommandIT.class);
static {
System.setProperty("test", "true");
HapiSystemProperties.enableTestMode();
}
@RegisterExtension

3
hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/CreatePackageCommandTest.java
View File

@ -2,6 +2,7 @@ package ca.uhn.fhir.cli;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.test.BaseTest;
import com.google.common.base.Charsets;
import com.google.common.io.Files;
@ -34,7 +35,7 @@ public class CreatePackageCommandTest extends BaseTest {
private static final Logger ourLog = LoggerFactory.getLogger(CreatePackageCommandTest.class);
static {
System.setProperty("test", "true");
HapiSystemProperties.enableTestMode();
}
private File myWorkDirectory;

5
hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/ExportConceptMapToCsvCommandDstu3Test.java
View File

@ -1,8 +1,9 @@
package ca.uhn.fhir.cli;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.test.utilities.TlsAuthenticationTestHelper;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.test.utilities.RestServerDstu3Helper;
import ca.uhn.fhir.test.utilities.TlsAuthenticationTestHelper;
import ca.uhn.fhir.util.TestUtil;
import com.google.common.base.Charsets;
import org.apache.commons.io.FileUtils;
@ -38,7 +39,7 @@ public class ExportConceptMapToCsvCommandDstu3Test {
private final String myVersion = "dstu3";
static {
System.setProperty("test", "true");
HapiSystemProperties.enableTestMode();
}
@RegisterExtension

5
hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/ExportConceptMapToCsvCommandR4Test.java
View File

@ -1,8 +1,9 @@
package ca.uhn.fhir.cli;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.test.utilities.TlsAuthenticationTestHelper;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.test.utilities.RestServerR4Helper;
import ca.uhn.fhir.test.utilities.TlsAuthenticationTestHelper;
import ca.uhn.fhir.util.TestUtil;
import com.google.common.base.Charsets;
import org.apache.commons.io.FileUtils;
@ -35,7 +36,7 @@ public class ExportConceptMapToCsvCommandR4Test {
private static final String FILE = new File("./target/output_r4.csv").getAbsolutePath();
static {
System.setProperty("test", "true");
HapiSystemProperties.enableTestMode();
}
@RegisterExtension

3
hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/HapiFlywayMigrateDatabaseCommandTest.java
View File

@ -2,6 +2,7 @@ package ca.uhn.fhir.cli;
import ca.uhn.fhir.jpa.migrate.DriverTypeEnum;
import ca.uhn.fhir.jpa.migrate.JdbcUtils;
import ca.uhn.fhir.system.HapiSystemProperties;
import com.google.common.base.Charsets;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.IOUtils;
@ -37,7 +38,7 @@ public class HapiFlywayMigrateDatabaseCommandTest {
public static final String DB_DIRECTORY = "target/h2_test";
static {
System.setProperty("test", "true");
HapiSystemProperties.enableTestMode();
}
@Test

3
hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/ImportCsvToConceptMapCommandDstu3Test.java
View File

@ -2,6 +2,7 @@ package ca.uhn.fhir.cli;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.test.utilities.RestServerDstu3Helper;
import ca.uhn.fhir.test.utilities.TlsAuthenticationTestHelper;
import ca.uhn.fhir.util.TestUtil;
@ -40,7 +41,7 @@ public class ImportCsvToConceptMapCommandDstu3Test {
private String myFile;
static {
System.setProperty("test", "true");
HapiSystemProperties.enableTestMode();
}
@RegisterExtension

3
hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/ImportCsvToConceptMapCommandR4Test.java
View File

@ -2,6 +2,7 @@ package ca.uhn.fhir.cli;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.test.utilities.RestServerR4Helper;
import ca.uhn.fhir.test.utilities.TlsAuthenticationTestHelper;
import ca.uhn.fhir.util.TestUtil;
@ -39,7 +40,7 @@ public class ImportCsvToConceptMapCommandR4Test {
private static final String STATUS = "Active";
static {
System.setProperty("test", "true");
HapiSystemProperties.enableTestMode();
}
private final FhirContext myFhirContext = FhirContext.forR4();

3
hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/ReindexTerminologyCommandTest.java
View File

@ -2,6 +2,7 @@ package ca.uhn.fhir.cli;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.provider.BaseJpaSystemProvider;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.test.utilities.RestServerR4Helper;
import ca.uhn.fhir.test.utilities.TlsAuthenticationTestHelper;
import ca.uhn.fhir.util.ParametersUtil;
@ -42,7 +43,7 @@ class ReindexTerminologyCommandTest {
private final ByteArrayOutputStream outputStreamCaptor = new ByteArrayOutputStream();
static {
System.setProperty("test", "true");
HapiSystemProperties.enableTestMode();
}
@BeforeEach

5
hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/UploadTerminologyCommandTest.java
View File

@ -7,6 +7,7 @@ import ca.uhn.fhir.jpa.provider.TerminologyUploaderProvider;
import ca.uhn.fhir.jpa.term.UploadStatistics;
import ca.uhn.fhir.jpa.term.api.ITermLoaderSvc;
import ca.uhn.fhir.rest.server.interceptor.RequestValidatingInterceptor;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.test.utilities.BaseRestServerHelper;
import ca.uhn.fhir.test.utilities.RestServerDstu3Helper;
import ca.uhn.fhir.test.utilities.RestServerR4Helper;
@ -50,8 +51,8 @@ import static org.hamcrest.CoreMatchers.containsString;
import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.equalTo;
import static org.hamcrest.Matchers.greaterThan;
import static org.hamcrest.Matchers.matchesPattern;
import static org.hamcrest.Matchers.is;
import static org.hamcrest.Matchers.matchesPattern;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.fail;
import static org.mockito.ArgumentMatchers.any;
@ -89,7 +90,7 @@ public class UploadTerminologyCommandTest {
protected ArgumentCaptor<List<ITermLoaderSvc.FileDescriptor>> myDescriptorListCaptor;
static {
System.setProperty("test", "true");
HapiSystemProperties.enableTestMode();
}
static Stream<Arguments> paramsProvider(){

15
hapi-fhir-cli/hapi-fhir-cli-api/src/test/java/ca/uhn/fhir/cli/ValidateCommandTest.java
View File

@ -1,26 +1,15 @@
package ca.uhn.fhir.cli;
import ca.uhn.fhir.system.HapiSystemProperties;
import ch.qos.logback.classic.Level;
import ch.qos.logback.classic.Logger;
import ch.qos.logback.classic.LoggerContext;
import ch.qos.logback.classic.joran.JoranConfigurator;
import ch.qos.logback.classic.spi.ILoggingEvent;
import ch.qos.logback.core.joran.spi.JoranException;
import ch.qos.logback.core.read.ListAppender;
import org.apache.commons.cli.CommandLine;
import org.apache.commons.cli.DefaultParser;
import org.apache.commons.cli.ParseException;
import org.junit.jupiter.api.AfterEach;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.slf4j.LoggerFactory;
import java.util.List;
import java.util.stream.Collectors;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.fail;
public class ValidateCommandTest {
private final Logger ourLog = (Logger) LoggerFactory.getLogger(ValidateCommand.class);
@ -44,7 +33,7 @@ public class ValidateCommandTest {
@BeforeEach
public void before() {
System.setProperty("test", "true");
HapiSystemProperties.enableTestMode();
}
@Test

9
hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
View File

@ -89,14 +89,7 @@ public class CommonConfig {
extraProperties.put("hibernate.cache.use_structured_entries", "false");
extraProperties.put("hibernate.cache.use_minimal_puts", "false");
extraProperties.put("hibernate.search.backend.type", "lucene");
// extraProperties.put(BackendSettings.backendKey(LuceneBackendSettings.ANALYSIS_CONFIGURER), HapiLuceneAnalysisConfigurer.class.getName());
// extraProperties.put(BackendSettings.backendKey(LuceneIndexSettings.DIRECTORY_TYPE), "local-filesystem");
// extraProperties.put(BackendSettings.backendKey(LuceneIndexSettings.DIRECTORY_ROOT), "target/lucenefiles");
// extraProperties.put(BackendSettings.backendKey(LuceneBackendSettings.LUCENE_VERSION), "LUCENE_CURRENT");
// if (System.getProperty("lowmem") != null) {
extraProperties.put(HibernateOrmMapperSettings.ENABLED, "false");
// }
extraProperties.put(HibernateOrmMapperSettings.ENABLED, "false");
return extraProperties;
}

12
hapi-fhir-client/src/main/java/ca/uhn/fhir/rest/client/impl/BaseClient.java
View File

@ -20,12 +20,12 @@ package ca.uhn.fhir.rest.client.impl;
* #L%
*/
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementCompositeDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.interceptor.api.HookParams;
import ca.uhn.fhir.interceptor.api.IInterceptorService;
import ca.uhn.fhir.interceptor.api.Pointcut;
@ -53,6 +53,7 @@ import ca.uhn.fhir.rest.client.method.IClientResponseHandlerHandlesBinary;
import ca.uhn.fhir.rest.client.method.MethodUtil;
import ca.uhn.fhir.rest.server.exceptions.BaseServerResponseException;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.util.BinaryUtil;
import ca.uhn.fhir.util.OperationOutcomeUtil;
import ca.uhn.fhir.util.XmlDetectionUtil;
@ -85,13 +86,6 @@ import static org.apache.commons.lang3.StringUtils.isNotBlank;
public abstract class BaseClient implements IRestfulClient {
/**
* This property is used by unit tests - do not rely on it in production code
* as it may change at any time. If you want to capture responses in a reliable
* way in your own code, just use client interceptors
*/
public static final String HAPI_CLIENT_KEEPRESPONSES = "hapi.client.keepresponses";
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(BaseClient.class);
private final IHttpClient myClient;
@ -118,7 +112,7 @@ public abstract class BaseClient implements IRestfulClient {
* as it may change at any time. If you want to capture responses in a reliable
* way in your own code, just use client interceptors
*/
if ("true".equals(System.getProperty(HAPI_CLIENT_KEEPRESPONSES))) {
if (HapiSystemProperties.isHapiClientKeepResponsesEnabled()) {
setKeepResponses(true);
}

6
hapi-fhir-converter/src/main/java/ca/uhn/hapi/converters/server/VersionedApiConverterInterceptor.java
View File

@ -20,9 +20,9 @@ package ca.uhn.hapi.converters.server;
* #L%
*/
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.interceptor.api.Interceptor;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.rest.api.Constants;
@ -45,7 +45,9 @@ import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import java.util.StringTokenizer;
import static org.apache.commons.lang3.StringUtils.*;
import static org.apache.commons.lang3.StringUtils.defaultString;
import static org.apache.commons.lang3.StringUtils.isBlank;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
/**
* <b>This is an experimental interceptor! Use with caution as

3
hapi-fhir-converter/src/test/java/ca/uhn/hapi/converters/canonical/VersionCanonicalizerTest.java
View File

@ -4,10 +4,9 @@ import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.model.dstu2.composite.CodingDt;
import org.hl7.fhir.instance.model.api.IBaseCoding;
import org.hl7.fhir.r4.model.Coding;
import org.hl7.fhir.r4.model.ValueSet;
import org.junit.jupiter.api.Test;
import static org.junit.jupiter.api.Assertions.*;
import static org.junit.jupiter.api.Assertions.assertEquals;
class VersionCanonicalizerTest {

3
hapi-fhir-jaxrsserver-base/src/test/java/ca/uhn/fhir/jaxrs/client/GenericJaxRsClientDstu3Test.java
View File

@ -17,6 +17,7 @@ import ca.uhn.fhir.rest.client.api.ServerValidationModeEnum;
import ca.uhn.fhir.rest.client.exceptions.InvalidResponseException;
import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
import ca.uhn.fhir.rest.param.DateRangeParam;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.test.utilities.JettyUtil;
import com.google.common.collect.ArrayListMultimap;
import com.google.common.collect.Lists;
@ -101,7 +102,7 @@ public class GenericJaxRsClientDstu3Test {
ourCtx.setRestfulClientFactory(clientFactory);
ourResponseCount = 0;
System.setProperty("hapi.client.keepresponses", "true");
HapiSystemProperties.enableHapiClientKeepResponses();
}
private String getPatientFeedWithOneResult() {

3
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/batch2/JpaBatch2Config.java
View File

@ -26,6 +26,7 @@ import ca.uhn.fhir.batch2.coordinator.SynchronizedJobPersistenceWrapper;
import ca.uhn.fhir.jpa.bulk.export.job.BulkExportJobConfig;
import ca.uhn.fhir.jpa.dao.data.IBatch2JobInstanceRepository;
import ca.uhn.fhir.jpa.dao.data.IBatch2WorkChunkRepository;
import ca.uhn.fhir.system.HapiSystemProperties;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Import;
@ -49,7 +50,7 @@ public class JpaBatch2Config extends BaseBatch2Config {
IJobPersistence retVal = batch2JobInstancePersister(theJobInstanceRepository, theWorkChunkRepository, theTransactionManager);
// Avoid H2 synchronization issues caused by
// https://github.com/h2database/h2database/issues/1808
if ("true".equals(System.getProperty("unit_test_mode"))) {
if (HapiSystemProperties.isUnitTestModeEnabled()) {
retVal = new SynchronizedJobPersistenceWrapper(retVal);
}
return retVal;

1
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/batch2/JpaJobPersistenceImpl.java
View File

@ -35,7 +35,6 @@ import ca.uhn.fhir.jpa.entity.Batch2JobInstanceEntity;
import ca.uhn.fhir.jpa.entity.Batch2WorkChunkEntity;
import ca.uhn.fhir.jpa.util.JobInstanceUtil;
import ca.uhn.fhir.model.api.PagingIterator;
import ca.uhn.fhir.narrative.BaseThymeleafNarrativeGenerator;
import org.apache.commons.collections4.ListUtils;
import org.apache.commons.lang3.Validate;
import org.slf4j.Logger;

1
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/JpaConfig.java
View File

@ -62,7 +62,6 @@ import ca.uhn.fhir.jpa.partition.PartitionLookupSvcImpl;
import ca.uhn.fhir.jpa.partition.PartitionManagementProvider;
import ca.uhn.fhir.jpa.partition.RequestPartitionHelperSvc;
import ca.uhn.fhir.jpa.provider.DiffProvider;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;
import ca.uhn.fhir.jpa.provider.ProcessMessageProvider;
import ca.uhn.fhir.jpa.provider.SubscriptionTriggeringProvider;
import ca.uhn.fhir.jpa.provider.TerminologyUploaderProvider;

2
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/JpaPersistedResourceValidationSupport.java
View File

@ -35,9 +35,9 @@ import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.param.StringParam;
import ca.uhn.fhir.rest.param.TokenParam;
import ca.uhn.fhir.rest.param.UriParam;
import org.apache.commons.lang3.Validate;
import ca.uhn.fhir.sl.cache.Cache;
import ca.uhn.fhir.sl.cache.CacheFactory;
import org.apache.commons.lang3.Validate;
import org.hl7.fhir.instance.model.api.IAnyResource;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.r4.model.CodeSystem;

1
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/JpaResourceDaoValueSet.java
View File

@ -36,7 +36,6 @@ import ca.uhn.fhir.rest.api.server.storage.TransactionDetails;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.rest.server.exceptions.PreconditionFailedException;
import ca.uhn.fhir.util.ParametersUtil;
import ca.uhn.hapi.converters.canonical.VersionCanonicalizer;
import org.hl7.fhir.common.hapi.validation.support.CommonCodeSystemsTerminologyService;
import org.hl7.fhir.instance.model.api.IBaseCoding;

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/Search.java
View File

@ -3,11 +3,11 @@ package ca.uhn.fhir.jpa.entity;
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
import ca.uhn.fhir.jpa.model.search.SearchStatusEnum;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import ca.uhn.fhir.jpa.util.QueryParameterUtils;
import ca.uhn.fhir.model.api.Include;
import ca.uhn.fhir.rest.param.DateRangeParam;
import ca.uhn.fhir.rest.param.HistorySearchStyleEnum;
import ca.uhn.fhir.rest.server.util.ICachedSearchDetails;
import ca.uhn.fhir.system.HapiSystemProperties;
import org.apache.commons.lang3.SerializationUtils;
import org.apache.commons.lang3.builder.ToStringBuilder;
import org.hibernate.annotations.OptimisticLock;
@ -237,7 +237,7 @@ public class Search implements ICachedSearchDetails, Serializable {
public void setFailureMessage(String theFailureMessage) {
myFailureMessage = left(theFailureMessage, FAILURE_MESSAGE_LENGTH);
if (System.getProperty(QueryParameterUtils.UNIT_TEST_CAPTURE_STACK) != null) {
if (HapiSystemProperties.isUnitTestCaptureStackEnabled()) {
myFailureMessage = theFailureMessage;
}
}

10
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/partition/PartitionLookupSvcImpl.java
View File

@ -20,8 +20,8 @@ package ca.uhn.fhir.jpa.partition;
* #L%
*/
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.jpa.dao.data.IPartitionDao;
import ca.uhn.fhir.jpa.entity.PartitionEntity;
import ca.uhn.fhir.jpa.model.config.PartitionSettings;
@ -29,20 +29,20 @@ import ca.uhn.fhir.jpa.model.util.JpaConstants;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.rest.server.exceptions.MethodNotAllowedException;
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
import org.apache.commons.lang3.Validate;
import org.checkerframework.checker.nullness.qual.NonNull;
import org.checkerframework.checker.nullness.qual.Nullable;
import ca.uhn.fhir.sl.cache.CacheFactory;
import ca.uhn.fhir.sl.cache.CacheLoader;
import ca.uhn.fhir.sl.cache.LoadingCache;
import org.apache.commons.lang3.Validate;
import org.checkerframework.checker.nullness.qual.NonNull;
import org.checkerframework.checker.nullness.qual.Nullable;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.transaction.PlatformTransactionManager;
import org.springframework.transaction.annotation.Transactional;
import org.springframework.transaction.support.TransactionTemplate;
import javax.annotation.PostConstruct;
import org.springframework.transaction.annotation.Transactional;
import java.util.List;
import java.util.Optional;
import java.util.concurrent.TimeUnit;

1
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/BaseJpaResourceProviderCodeSystem.java
View File

@ -44,7 +44,6 @@ import javax.servlet.http.HttpServletRequest;
import java.util.List;
import static ca.uhn.fhir.jpa.provider.ValueSetOperationProvider.toValidateCodeResult;
import static ca.uhn.fhir.util.DatatypeUtil.toStringValue;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
public abstract class BaseJpaResourceProviderCodeSystem<T extends IBaseResource> extends BaseJpaResourceProvider<T> {

2
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/JpaSystemProvider.java
View File

@ -36,9 +36,7 @@ import org.hl7.fhir.instance.model.api.IBaseBundle;
import org.hl7.fhir.instance.model.api.IBaseParameters;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IPrimitiveType;
import org.hl7.fhir.r4.model.Meta;
import javax.servlet.http.HttpServletRequest;
import java.util.Collections;
import java.util.List;
import java.util.Map;

1
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/ValueSetOperationProvider.java
View File

@ -53,7 +53,6 @@ import org.springframework.beans.factory.annotation.Qualifier;
import javax.servlet.http.HttpServletRequest;
import static ca.uhn.fhir.util.DatatypeUtil.toStringValue;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
public class ValueSetOperationProvider extends BaseJpaProvider {

6
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/search/builder/tasks/SearchTask.java
View File

@ -28,7 +28,6 @@ import ca.uhn.fhir.interceptor.api.Pointcut;
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
import ca.uhn.fhir.jpa.api.config.DaoConfig;
import ca.uhn.fhir.jpa.api.dao.IDao;
import ca.uhn.fhir.jpa.api.svc.ISearchCoordinatorSvc;
import ca.uhn.fhir.jpa.dao.IResultIterator;
import ca.uhn.fhir.jpa.dao.ISearchBuilder;
import ca.uhn.fhir.jpa.dao.SearchBuilderFactory;
@ -36,7 +35,6 @@ import ca.uhn.fhir.jpa.entity.Search;
import ca.uhn.fhir.jpa.interceptor.JpaPreResourceAccessDetails;
import ca.uhn.fhir.jpa.model.search.SearchRuntimeDetails;
import ca.uhn.fhir.jpa.model.search.SearchStatusEnum;
import ca.uhn.fhir.jpa.search.ExceptionService;
import ca.uhn.fhir.jpa.search.SearchStrategyFactory;
import ca.uhn.fhir.jpa.search.cache.ISearchCacheSvc;
import ca.uhn.fhir.jpa.search.cache.ISearchResultCacheSvc;
@ -51,6 +49,7 @@ import ca.uhn.fhir.rest.server.exceptions.BaseServerResponseException;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
import ca.uhn.fhir.rest.server.util.CompositeInterceptorBroadcaster;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.util.AsyncUtil;
import ca.uhn.fhir.util.StopWatch;
import co.elastic.apm.api.ElasticApm;
@ -78,7 +77,6 @@ import java.util.concurrent.CountDownLatch;
import java.util.concurrent.TimeUnit;
import java.util.function.Consumer;
import static ca.uhn.fhir.jpa.util.QueryParameterUtils.UNIT_TEST_CAPTURE_STACK;
import static ca.uhn.fhir.jpa.util.SearchParameterMapCalculator.isWantCount;
import static ca.uhn.fhir.jpa.util.SearchParameterMapCalculator.isWantOnlyCount;
import static java.util.Objects.nonNull;
@ -483,7 +481,7 @@ public class SearchTask implements Callable<Void> {
failureCode = ((BaseServerResponseException) t).getStatusCode();
}
if (System.getProperty(UNIT_TEST_CAPTURE_STACK) != null) {
if (HapiSystemProperties.isUnitTestCaptureStackEnabled()) {
failureMessage += "\nStack\n" + ExceptionUtils.getStackTrace(rootCause);
}

6
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/search/cache/DatabaseSearchCacheSvcImpl.java vendored
View File

@ -27,8 +27,8 @@ import ca.uhn.fhir.jpa.dao.data.ISearchDao;
import ca.uhn.fhir.jpa.dao.data.ISearchIncludeDao;
import ca.uhn.fhir.jpa.dao.data.ISearchResultDao;
import ca.uhn.fhir.jpa.entity.Search;
import ca.uhn.fhir.jpa.entity.SearchInclude;
import ca.uhn.fhir.jpa.model.search.SearchStatusEnum;
import ca.uhn.fhir.system.HapiSystemProperties;
import com.google.common.annotations.VisibleForTesting;
import com.google.common.collect.Lists;
import org.apache.commons.lang3.Validate;
@ -42,9 +42,9 @@ import org.springframework.data.domain.Slice;
import org.springframework.transaction.PlatformTransactionManager;
import org.springframework.transaction.TransactionDefinition;
import org.springframework.transaction.annotation.Propagation;
import org.springframework.transaction.annotation.Transactional;
import org.springframework.transaction.support.TransactionTemplate;
import org.springframework.transaction.annotation.Transactional;
import java.time.Instant;
import java.util.Collection;
import java.util.Date;
@ -202,7 +202,7 @@ public class DatabaseSearchCacheSvcImpl implements ISearchCacheSvc {
int count = toDelete.getContent().size();
if (count > 0) {
if (ourLog.isDebugEnabled() || "true".equalsIgnoreCase(System.getProperty("test"))) {
if (ourLog.isDebugEnabled() || HapiSystemProperties.isTestModeEnabled()) {
Long total = tt.execute(t -> mySearchDao.count());
ourLog.debug("Deleted {} searches, {} remaining", count, total);
}

1
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/QueryParameterUtils.java
View File

@ -69,7 +69,6 @@ import static org.apache.commons.lang3.ObjectUtils.defaultIfNull;
public class QueryParameterUtils {
private static final Logger ourLog = LoggerFactory.getLogger(QueryParameterUtils.class);
public static final int DEFAULT_SYNC_SIZE = 250;
public static final String UNIT_TEST_CAPTURE_STACK = "unit_test_capture_stack";
private static final BidiMap<SearchFilterParser.CompareOperation, ParamPrefixEnum> ourCompareOperationToParamPrefix;

1
hapi-fhir-jpaserver-elastic-test-utilities/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchWithElasticSearchIT.java
View File

@ -57,7 +57,6 @@ import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.model.Bundle;
import org.hl7.fhir.r4.model.CodeSystem;
import org.hl7.fhir.r4.model.CodeableConcept;
import org.hl7.fhir.r4.model.Coding;
import org.hl7.fhir.r4.model.DateTimeType;
import org.hl7.fhir.r4.model.DecimalType;
import org.hl7.fhir.r4.model.DiagnosticReport;

2
hapi-fhir-jpaserver-elastic-test-utilities/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4TerminologyElasticsearchIT.java
View File

@ -23,8 +23,6 @@ import ca.uhn.fhir.util.TestUtil;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.model.CodeSystem;
import org.hl7.fhir.r4.model.CodeSystem.CodeSystemContentMode;
import org.hl7.fhir.r4.model.CodeableConcept;
import org.hl7.fhir.r4.model.Coding;
import org.hl7.fhir.r4.model.ValueSet;
import org.hl7.fhir.r4.model.ValueSet.ConceptReferenceComponent;
import org.junit.jupiter.api.AfterAll;

1
hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
View File

@ -32,7 +32,6 @@ import ca.uhn.fhir.jpa.model.config.PartitionSettings;
import ca.uhn.fhir.jpa.model.entity.BaseResourceIndexedSearchParam;
import ca.uhn.fhir.jpa.model.entity.BaseResourceIndexedSearchParamQuantity;
import ca.uhn.fhir.jpa.model.entity.ModelConfig;
import ca.uhn.fhir.jpa.model.entity.NormalizedQuantitySearchLevel;
import ca.uhn.fhir.jpa.model.entity.ResourceIndexedSearchParamCoords;
import ca.uhn.fhir.jpa.model.entity.ResourceIndexedSearchParamDate;
import ca.uhn.fhir.jpa.model.entity.ResourceIndexedSearchParamNumber;

2
hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/SearchParamExtractorR4.java
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@ -24,9 +24,9 @@ import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.model.config.PartitionSettings;
import ca.uhn.fhir.jpa.model.entity.ModelConfig;
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
import com.google.common.annotations.VisibleForTesting;
import ca.uhn.fhir.sl.cache.Cache;
import ca.uhn.fhir.sl.cache.CacheFactory;
import com.google.common.annotations.VisibleForTesting;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.exceptions.PathEngineException;
import org.hl7.fhir.instance.model.api.IBase;

2
hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/SearchParamExtractorR4B.java
View File

@ -24,9 +24,9 @@ import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.model.config.PartitionSettings;
import ca.uhn.fhir.jpa.model.entity.ModelConfig;
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
import com.google.common.annotations.VisibleForTesting;
import ca.uhn.fhir.sl.cache.Cache;
import ca.uhn.fhir.sl.cache.CacheFactory;
import com.google.common.annotations.VisibleForTesting;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.exceptions.PathEngineException;
import org.hl7.fhir.instance.model.api.IBase;

3
hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/retry/Retrier.java
View File

@ -20,6 +20,7 @@ package ca.uhn.fhir.jpa.searchparam.retry;
* #L%
*/
import ca.uhn.fhir.system.HapiSystemProperties;
import org.apache.commons.lang3.Validate;
import org.apache.commons.lang3.time.DateUtils;
import org.slf4j.Logger;
@ -73,7 +74,7 @@ public class Retrier<T> {
@Override
public <T, E extends Throwable> void onError(RetryContext context, RetryCallback<T, E> callback, Throwable throwable) {
super.onError(context, callback, throwable);
if (throwable instanceof NullPointerException || throwable instanceof UnsupportedOperationException || "true".equals(System.getProperty("unit_test_mode"))) {
if (throwable instanceof NullPointerException || throwable instanceof UnsupportedOperationException || HapiSystemProperties.isUnitTestModeEnabled()) {
ourLog.error("Retry failure {}/{}: {}", context.getRetryCount(), theMaxRetries, throwable.getMessage(), throwable);
} else {
ourLog.error("Retry failure {}/{}: {}", context.getRetryCount(), theMaxRetries, throwable.toString());

7
hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/BaseSubscriptionTest.java
View File

@ -5,17 +5,14 @@ import ca.uhn.fhir.interceptor.executor.InterceptorService;
import ca.uhn.fhir.jpa.api.config.DaoConfig;
import ca.uhn.fhir.jpa.searchparam.config.SearchParamConfig;
import ca.uhn.fhir.jpa.searchparam.registry.SearchParamRegistryImpl;
import ca.uhn.fhir.jpa.subscription.channel.api.ChannelConsumerSettings;
import ca.uhn.fhir.jpa.subscription.channel.api.ChannelProducerSettings;
import ca.uhn.fhir.jpa.subscription.channel.api.IChannelFactory;
import ca.uhn.fhir.jpa.subscription.channel.api.IChannelProducer;
import ca.uhn.fhir.jpa.subscription.channel.api.IChannelReceiver;
import ca.uhn.fhir.jpa.subscription.channel.impl.LinkedBlockingChannelFactory;
import ca.uhn.fhir.jpa.subscription.channel.subscription.IChannelNamer;
import ca.uhn.fhir.jpa.subscription.channel.subscription.SubscriptionChannelFactory;
import ca.uhn.fhir.jpa.subscription.match.config.SubscriptionProcessorConfig;
import ca.uhn.fhir.jpa.subscription.module.config.MockFhirClientSearchParamProvider;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.system.HapiSystemProperties;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.junit.jupiter.api.AfterEach;
import org.junit.jupiter.api.BeforeEach;
@ -37,7 +34,7 @@ import java.util.Collections;
public abstract class BaseSubscriptionTest {
static {
System.setProperty("unit_test_mode", "true");
HapiSystemProperties.enableUnitTestMode();
}
@Autowired

2
hapi-fhir-jpaserver-test-dstu2/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/BaseJpaDstu2Test.java
View File

@ -55,7 +55,6 @@ import ca.uhn.fhir.model.dstu2.resource.Substance;
import ca.uhn.fhir.model.dstu2.resource.ValueSet;
import ca.uhn.fhir.rest.server.provider.ResourceProviderFactory;
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
import ca.uhn.fhir.test.utilities.server.SpringContextGrabbingTestExecutionListener;
import org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain;
import org.hl7.fhir.instance.model.api.IIdType;
import org.junit.jupiter.api.AfterEach;
@ -65,7 +64,6 @@ import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.beans.factory.annotation.Qualifier;
import org.springframework.context.ApplicationContext;
import org.springframework.test.context.ContextConfiguration;
import org.springframework.test.context.TestExecutionListeners;
import org.springframework.test.context.junit.jupiter.SpringExtension;
import org.springframework.transaction.PlatformTransactionManager;
import org.springframework.transaction.TransactionDefinition;

2
hapi-fhir-jpaserver-test-dstu2/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/FhirResourceDaoDstu2SearchCustomSearchParamTest.java
View File

@ -37,13 +37,11 @@ import ca.uhn.fhir.rest.param.TokenParam;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
import org.hl7.fhir.instance.model.api.IIdType;
import org.junit.jupiter.api.AfterEach;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.simplejavamail.internal.util.ListUtil;
import java.util.List;
import java.util.stream.Collectors;

5
hapi-fhir-jpaserver-test-dstu2/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/FhirResourceDaoValueSetDstu2Test.java
View File

@ -2,7 +2,6 @@ package ca.uhn.fhir.jpa.dao.dstu2;
import ca.uhn.fhir.context.support.IValidationSupport;
import ca.uhn.fhir.context.support.ValueSetExpansionOptions;
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoCodeSystem;
import ca.uhn.fhir.jpa.provider.ResourceProviderDstu2ValueSetTest;
import ca.uhn.fhir.model.dstu2.composite.CodeableConceptDt;
import ca.uhn.fhir.model.dstu2.composite.CodingDt;
@ -21,14 +20,10 @@ import java.util.List;
import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.contains;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.not;
import static org.hamcrest.Matchers.stringContainsInOrder;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertFalse;
import static org.junit.jupiter.api.Assertions.assertNotNull;
import static org.junit.jupiter.api.Assertions.assertTrue;
import static org.junit.jupiter.api.Assertions.fail;
public class FhirResourceDaoValueSetDstu2Test extends BaseJpaDstu2Test {

2
hapi-fhir-jpaserver-test-dstu2/src/test/java/ca/uhn/fhir/jpa/provider/ResourceProviderDstu2Test.java
View File

@ -112,7 +112,7 @@ import java.util.HashSet;
import java.util.List;
import java.util.Set;
import static ca.uhn.fhir.test.utilities.CustomMatchersUtil.*;
import static ca.uhn.fhir.test.utilities.CustomMatchersUtil.assertDoesNotContainAnyOf;
import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.contains;
import static org.hamcrest.Matchers.containsInAnyOrder;

2
hapi-fhir-jpaserver-test-dstu2/src/test/java/ca/uhn/fhir/jpa/provider/ResourceProviderDstu2ValueSetTest.java
View File

@ -23,8 +23,6 @@ import java.util.stream.Collectors;
import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.contains;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.not;
import static org.hamcrest.Matchers.stringContainsInOrder;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.fail;

6
hapi-fhir-jpaserver-test-dstu2/src/test/java/ca/uhn/fhir/jpa/search/SearchCoordinatorSvcImplTest.java
View File

@ -19,7 +19,6 @@ import ca.uhn.fhir.jpa.search.cache.ISearchCacheSvc;
import ca.uhn.fhir.jpa.search.cache.ISearchResultCacheSvc;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import ca.uhn.fhir.jpa.util.BaseIterator;
import ca.uhn.fhir.jpa.util.QueryParameterUtils;
import ca.uhn.fhir.rest.api.CacheControlDirective;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.api.server.RequestDetails;
@ -28,6 +27,7 @@ import ca.uhn.fhir.rest.param.StringParam;
import ca.uhn.fhir.rest.server.IPagingProvider;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.exceptions.ResourceGoneException;
import ca.uhn.fhir.system.HapiSystemProperties;
import org.hamcrest.Matchers;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.junit.jupiter.api.AfterEach;
@ -110,13 +110,13 @@ public class SearchCoordinatorSvcImplTest extends BaseSearchSvc{
@AfterEach
public void after() {
System.clearProperty(QueryParameterUtils.UNIT_TEST_CAPTURE_STACK);
HapiSystemProperties.disableUnitTestCaptureStack();
super.after();
}
@BeforeEach
public void before() {
System.setProperty(QueryParameterUtils.UNIT_TEST_CAPTURE_STACK, "true");
HapiSystemProperties.enableUnitTestCaptureStack();
myCurrentSearch = null;

2
hapi-fhir-jpaserver-test-dstu3/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/BaseResourceProviderDstu3Test.java
View File

@ -1,11 +1,11 @@
package ca.uhn.fhir.jpa.provider.dstu3;
import ca.uhn.fhir.jpa.graphql.GraphQLProvider;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;
import ca.uhn.fhir.jpa.provider.ProcessMessageProvider;
import ca.uhn.fhir.jpa.provider.ServerConfiguration;
import ca.uhn.fhir.jpa.provider.SubscriptionTriggeringProvider;
import ca.uhn.fhir.jpa.provider.TerminologyUploaderProvider;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
import ca.uhn.fhir.jpa.test.BaseJpaDstu3Test;
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;

4
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/batch2/Batch2CoordinatorIT.java
View File

@ -39,10 +39,6 @@ import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.data.domain.Page;
import org.springframework.data.domain.Sort;
import org.springframework.messaging.Message;
import org.springframework.messaging.MessageChannel;
import org.springframework.messaging.MessageHandler;
import org.springframework.messaging.support.ExecutorChannelInterceptor;
import javax.annotation.Nonnull;
import java.util.ArrayList;

1
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/bulk/BulkExportUseCaseTest.java
View File

@ -59,7 +59,6 @@ import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.empty;
import static org.hamcrest.Matchers.equalTo;
import static org.hamcrest.Matchers.hasItem;
import static org.hamcrest.Matchers.hasSize;
import static org.hamcrest.Matchers.not;
import static org.junit.jupiter.api.Assertions.assertEquals;

5
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/bulk/BulkExportUseCaseTestAnyMode.java
View File

@ -6,11 +6,6 @@ import org.junit.jupiter.api.BeforeEach;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import static org.awaitility.Awaitility.await;
import static org.hamcrest.CoreMatchers.is;
import static org.hamcrest.CoreMatchers.notNullValue;
import static org.hamcrest.MatcherAssert.assertThat;
public class BulkExportUseCaseTestAnyMode extends BulkExportUseCaseTest {
private static final Logger ourLog = LoggerFactory.getLogger(BulkExportUseCaseTestAnyMode.class);

5
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirResourceDaoTest.java
View File

@ -40,11 +40,6 @@ import org.mockito.junit.jupiter.MockitoExtension;
import javax.persistence.EntityManager;
import java.util.List;
import java.util.List;
import java.util.List;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertNotNull;
import static org.junit.jupiter.api.Assertions.fail;

5
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4MetaTest.java
View File

@ -4,6 +4,7 @@ import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import ca.uhn.fhir.jpa.test.BaseJpaR4Test;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.param.TokenParam;
import ca.uhn.fhir.system.HapiTestSystemProperties;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.model.Bundle;
import org.hl7.fhir.r4.model.InstantType;
@ -38,12 +39,12 @@ public class FhirResourceDaoR4MetaTest extends BaseJpaR4Test {
// TODO testConcurrentAddTag() can deadlock if we don't increase this
@BeforeAll
public static void beforeAll() {
System.setProperty("unlimited_db_connection", "true");
HapiTestSystemProperties.enableUnlimitedDbConnections();
}
@AfterAll
public static void afterAll() {
System.clearProperty("unlimited_db_connection");
HapiTestSystemProperties.disableUnlimitedDbConnections();
}
/**

2
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchNoFtTest.java
View File

@ -173,7 +173,7 @@ import static ca.uhn.fhir.rest.param.ParamPrefixEnum.GREATERTHAN_OR_EQUALS;
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.LESSTHAN;
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.LESSTHAN_OR_EQUALS;
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.NOT_EQUAL;
import static ca.uhn.fhir.test.utilities.CustomMatchersUtil.*;
import static ca.uhn.fhir.test.utilities.CustomMatchersUtil.assertDoesNotContainAnyOf;
import static org.apache.commons.lang3.StringUtils.countMatches;
import static org.apache.commons.lang3.StringUtils.leftPad;
import static org.hamcrest.CoreMatchers.is;

12
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchWithHSearchDisabledTest.java
View File

@ -2,7 +2,6 @@ package ca.uhn.fhir.jpa.dao.r4;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.context.support.IValidationSupport;
import ca.uhn.fhir.context.support.ValueSetExpansionOptions;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.jpa.api.config.DaoConfig;
@ -27,19 +26,9 @@ import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.model.AllergyIntolerance;
import org.hl7.fhir.r4.model.Appointment;
import org.hl7.fhir.r4.model.AuditEvent;
import org.hl7.fhir.r4.model.Bundle;
import org.hl7.fhir.r4.model.CarePlan;
import org.hl7.fhir.r4.model.CodeSystem;
import org.hl7.fhir.r4.model.CodeType;
import org.hl7.fhir.r4.model.CompartmentDefinition;
import org.hl7.fhir.r4.model.ConceptMap;
import org.hl7.fhir.r4.model.Condition;
import org.hl7.fhir.r4.model.Device;
import org.hl7.fhir.r4.model.DiagnosticReport;
import org.hl7.fhir.r4.model.Encounter;
import org.hl7.fhir.r4.model.Meta;
import org.hl7.fhir.r4.model.Observation;
import org.hl7.fhir.r4.model.Organization;
@ -56,7 +45,6 @@ import org.springframework.test.context.junit.jupiter.SpringExtension;
import org.springframework.transaction.PlatformTransactionManager;
import org.springframework.transaction.annotation.Transactional;
import javax.persistence.EntityManager;
import java.io.IOException;
import java.util.List;

1
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4Test.java
View File

@ -157,7 +157,6 @@ import static org.junit.jupiter.api.Assertions.assertNotNull;
import static org.junit.jupiter.api.Assertions.assertNull;
import static org.junit.jupiter.api.Assertions.assertTrue;
import static org.junit.jupiter.api.Assertions.fail;
import static org.mockito.Mockito.reset;
@SuppressWarnings({"unchecked", "deprecation", "Duplicates"})
public class FhirResourceDaoR4Test extends BaseJpaR4Test {

2
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4UpdateTest.java
View File

@ -31,7 +31,6 @@ import org.hl7.fhir.r4.model.Organization;
import org.hl7.fhir.r4.model.Patient;
import org.hl7.fhir.r4.model.Resource;
import org.junit.jupiter.api.AfterEach;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
@ -57,7 +56,6 @@ import static org.junit.jupiter.api.Assertions.assertNotNull;
import static org.junit.jupiter.api.Assertions.assertTrue;
import static org.junit.jupiter.api.Assertions.fail;
import static org.mockito.ArgumentMatchers.eq;
import static org.mockito.Mockito.reset;
import static org.mockito.Mockito.when;
public class FhirResourceDaoR4UpdateTest extends BaseJpaR4Test {

1
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirSystemDaoR4Test.java
View File

@ -108,7 +108,6 @@ import static org.hamcrest.Matchers.emptyString;
import static org.hamcrest.Matchers.endsWith;
import static org.hamcrest.Matchers.equalTo;
import static org.hamcrest.Matchers.greaterThan;
import static org.hamcrest.Matchers.in;
import static org.hamcrest.Matchers.is;
import static org.hamcrest.Matchers.matchesPattern;
import static org.hamcrest.Matchers.not;

9
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/dao/r4/SyntheaPerfTest.java
View File

@ -10,6 +10,7 @@ import ca.uhn.fhir.jpa.test.BaseJpaTest;
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
import ca.uhn.fhir.jpa.test.config.TestR4Config;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.system.HapiTestSystemProperties;
import ca.uhn.fhir.util.StopWatch;
import org.apache.commons.lang3.Validate;
import org.hl7.fhir.r4.model.Bundle;
@ -111,14 +112,14 @@ public class SyntheaPerfTest extends BaseJpaTest {
@BeforeAll
public static void beforeAll() {
System.setProperty("unlimited_db_connection", "true");
System.setProperty("mass_ingestion_mode", "true");
HapiTestSystemProperties.enableUnlimitedDbConnections();
HapiTestSystemProperties.enableMassIngestionMode();
}
@AfterAll
public static void afterAll() {
System.clearProperty("unlimited_db_connection");
System.clearProperty("mass_ingestion_mode");
HapiTestSystemProperties.disableUnlimitedDbConnections();
HapiTestSystemProperties.disableMassIngestionMode();
}
private class Uploader {

2
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/provider/r4/PatientMemberMatchOperationR4Test.java
View File

@ -33,6 +33,7 @@ import java.nio.charset.StandardCharsets;
import java.util.Collections;
import java.util.List;
import static ca.uhn.fhir.rest.api.Constants.PARAM_CONSENT;
import static ca.uhn.fhir.rest.api.Constants.PARAM_CONSENT_PATIENT_REFERENCE;
import static ca.uhn.fhir.rest.api.Constants.PARAM_CONSENT_PERFORMER_REFERENCE;
import static ca.uhn.fhir.rest.api.Constants.PARAM_MEMBER_PATIENT;
@ -40,7 +41,6 @@ import static ca.uhn.fhir.rest.api.Constants.PARAM_MEMBER_PATIENT_BIRTHDATE;
import static ca.uhn.fhir.rest.api.Constants.PARAM_MEMBER_PATIENT_NAME;
import static ca.uhn.fhir.rest.api.Constants.PARAM_NEW_COVERAGE;
import static ca.uhn.fhir.rest.api.Constants.PARAM_OLD_COVERAGE;
import static ca.uhn.fhir.rest.api.Constants.PARAM_CONSENT;
import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.containsString;
import static org.junit.jupiter.api.Assertions.assertEquals;

1
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderConcurrencyR4Test.java
View File

@ -8,7 +8,6 @@ import ca.uhn.fhir.jpa.test.config.TestR4Config;
import ca.uhn.fhir.rest.api.server.RequestDetails;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import org.apache.commons.io.IOUtils;
import org.apache.derby.iapi.error.ThreadDump;
import org.apache.http.client.methods.CloseableHttpResponse;
import org.apache.http.client.methods.HttpGet;
import org.hl7.fhir.r4.model.Bundle;

3
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderR4ValueSetHSearchDisabledTest.java
View File

@ -4,7 +4,6 @@ import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoCodeSystem;
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoValueSet;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
import ca.uhn.fhir.jpa.subscription.match.config.WebsocketDispatcherConfig;
import ca.uhn.fhir.jpa.test.BaseJpaTest;
@ -23,8 +22,6 @@ import org.eclipse.jetty.servlet.ServletContextHandler;
import org.eclipse.jetty.servlet.ServletHolder;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.model.CodeSystem;
import org.hl7.fhir.r4.model.CodeableConcept;
import org.hl7.fhir.r4.model.Coding;
import org.hl7.fhir.r4.model.Parameters;
import org.hl7.fhir.r4.model.ValueSet;
import org.junit.jupiter.api.BeforeEach;

1
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/provider/r4/ServerCapabilityStatementProviderJpaR4Test.java
View File

@ -15,7 +15,6 @@ import org.hl7.fhir.r4.model.Enumerations;
import org.hl7.fhir.r4.model.SearchParameter;
import org.hl7.fhir.r4.model.StructureDefinition;
import org.junit.jupiter.api.AfterEach;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

1
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/provider/r4/SubscriptionsR4Test.java
View File

@ -23,7 +23,6 @@ import java.util.List;
import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.in;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.fail;

1
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/subscription/resthook/RestHookWithInterceptorR4Test.java
View File

@ -29,7 +29,6 @@ import org.slf4j.helpers.MessageFormatter;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
import org.springframework.test.context.ContextConfiguration;
import java.util.ArrayList;
import java.util.Arrays;

2
hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/term/TerminologySvcImplR4Test.java
View File

@ -9,7 +9,6 @@ import ca.uhn.fhir.jpa.entity.TermCodeSystem;
import ca.uhn.fhir.jpa.entity.TermCodeSystemVersion;
import ca.uhn.fhir.jpa.entity.TermConcept;
import ca.uhn.fhir.jpa.entity.TermValueSet;
import ca.uhn.fhir.jpa.term.api.TermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.test.Batch2JobHelper;
import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
import org.hl7.fhir.instance.model.api.IIdType;
@ -34,7 +33,6 @@ import java.util.HashSet;
import java.util.List;
import java.util.Optional;
import java.util.Set;
import java.util.concurrent.TimeUnit;
import static ca.uhn.fhir.batch2.jobs.termcodesystem.TermCodeSystemJobConfig.TERM_CODE_SYSTEM_VERSION_DELETE_JOB_NAME;
import static org.awaitility.Awaitility.await;

2
hapi-fhir-jpaserver-test-r4b/src/test/java/ca/uhn/fhir/jpa/dao/r4b/BaseJpaR4BTest.java
View File

@ -76,8 +76,6 @@ import org.hl7.fhir.r4b.model.Bundle;
import org.hl7.fhir.r4b.model.CarePlan;
import org.hl7.fhir.r4b.model.ChargeItem;
import org.hl7.fhir.r4b.model.CodeSystem;
import org.hl7.fhir.r4b.model.CodeableConcept;
import org.hl7.fhir.r4b.model.Coding;
import org.hl7.fhir.r4b.model.Communication;
import org.hl7.fhir.r4b.model.CommunicationRequest;
import org.hl7.fhir.r4b.model.CompartmentDefinition;

4
hapi-fhir-jpaserver-test-r5/src/test/java/ca/uhn/fhir/jpa/dao/r5/BaseJpaR5Test.java
View File

@ -53,9 +53,9 @@ import ca.uhn.fhir.jpa.search.reindex.IResourceReindexingSvc;
import ca.uhn.fhir.jpa.search.warm.ICacheWarmingSvc;
import ca.uhn.fhir.jpa.searchparam.registry.SearchParamRegistryImpl;
import ca.uhn.fhir.jpa.subscription.match.registry.SubscriptionRegistry;
import ca.uhn.fhir.jpa.term.TermReadSvcImpl;
import ca.uhn.fhir.jpa.term.TermConceptMappingSvcImpl;
import ca.uhn.fhir.jpa.term.TermDeferredStorageSvcImpl;
import ca.uhn.fhir.jpa.term.TermReadSvcImpl;
import ca.uhn.fhir.jpa.term.api.ITermCodeSystemStorageSvc;
import ca.uhn.fhir.jpa.term.api.ITermDeferredStorageSvc;
import ca.uhn.fhir.jpa.term.api.ITermReadSvc;
@ -85,8 +85,6 @@ import org.hl7.fhir.r5.model.CarePlan;
import org.hl7.fhir.r5.model.ChargeItem;
import org.hl7.fhir.r5.model.ClinicalUseDefinition;
import org.hl7.fhir.r5.model.CodeSystem;
import org.hl7.fhir.r5.model.CodeableConcept;
import org.hl7.fhir.r5.model.Coding;
import org.hl7.fhir.r5.model.Communication;
import org.hl7.fhir.r5.model.CommunicationRequest;
import org.hl7.fhir.r5.model.CompartmentDefinition;

2
hapi-fhir-jpaserver-test-r5/src/test/java/ca/uhn/fhir/jpa/provider/r5/BaseResourceProviderR5Test.java
View File

@ -6,13 +6,13 @@ import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
import ca.uhn.fhir.jpa.bulk.export.provider.BulkDataExportProvider;
import ca.uhn.fhir.jpa.dao.r5.BaseJpaR5Test;
import ca.uhn.fhir.jpa.graphql.GraphQLProvider;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;
import ca.uhn.fhir.jpa.provider.DiffProvider;
import ca.uhn.fhir.jpa.provider.JpaCapabilityStatementProvider;
import ca.uhn.fhir.jpa.provider.ProcessMessageProvider;
import ca.uhn.fhir.jpa.provider.ServerConfiguration;
import ca.uhn.fhir.jpa.provider.SubscriptionTriggeringProvider;
import ca.uhn.fhir.jpa.provider.TerminologyUploaderProvider;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
import ca.uhn.fhir.jpa.subscription.match.registry.SubscriptionLoader;
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;

1
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/provider/BaseResourceProviderR4Test.java
View File

@ -35,7 +35,6 @@ import ca.uhn.fhir.rest.api.EncodingEnum;
import ca.uhn.fhir.rest.client.api.IGenericClient;
import ca.uhn.fhir.rest.client.api.ServerValidationModeEnum;
import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
import ca.uhn.fhir.rest.server.RestfulServer;
import ca.uhn.fhir.rest.server.interceptor.CorsInterceptor;
import ca.uhn.fhir.test.utilities.HttpClientExtension;
import ca.uhn.fhir.test.utilities.server.RestfulServerConfigurerExtension;

1
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/provider/r4/BaseResourceProviderR4Test.java
View File

@ -28,7 +28,6 @@ import ca.uhn.fhir.jpa.api.svc.ISearchCoordinatorSvc;
import ca.uhn.fhir.jpa.dao.data.IPartitionDao;
import ca.uhn.fhir.jpa.graphql.GraphQLProvider;
import ca.uhn.fhir.jpa.provider.DiffProvider;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;
import ca.uhn.fhir.jpa.provider.JpaCapabilityStatementProvider;
import ca.uhn.fhir.jpa.provider.TerminologyUploaderProvider;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;

1
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/term/TermCodeSystemDeleteJobSvcWithUniTestFailures.java
View File

@ -24,7 +24,6 @@ import ca.uhn.fhir.jpa.term.api.ITermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.term.api.TermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import com.google.common.annotations.VisibleForTesting;
import org.apache.commons.lang3.Validate;
import java.util.concurrent.atomic.AtomicBoolean;

4
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/test/BaseJpaR4Test.java
View File

@ -102,7 +102,6 @@ import ca.uhn.fhir.parser.StrictErrorHandler;
import ca.uhn.fhir.rest.api.Constants;
import ca.uhn.fhir.rest.api.EncodingEnum;
import ca.uhn.fhir.rest.server.BasePagingProvider;
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
import ca.uhn.fhir.rest.server.provider.ResourceProviderFactory;
import ca.uhn.fhir.test.utilities.ITestDataBuilder;
import ca.uhn.fhir.util.UrlUtil;
@ -199,7 +198,6 @@ import org.springframework.transaction.PlatformTransactionManager;
import javax.persistence.EntityManager;
import java.io.IOException;
import java.util.ArrayList;
import java.util.IdentityHashMap;
import java.util.List;
import java.util.Map;
import java.util.Optional;
@ -210,9 +208,7 @@ import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.contains;
import static org.hamcrest.Matchers.empty;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertTrue;
import static org.junit.jupiter.api.Assertions.fail;
import static org.mockito.Mockito.mock;
@ExtendWith(SpringExtension.class)
@ContextConfiguration(classes = {TestR4Config.class})

8
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/test/BaseJpaTest.java
View File

@ -72,12 +72,12 @@ import ca.uhn.fhir.jpa.subscription.match.registry.SubscriptionLoader;
import ca.uhn.fhir.jpa.subscription.match.registry.SubscriptionRegistry;
import ca.uhn.fhir.jpa.util.CircularQueueCaptureQueriesListener;
import ca.uhn.fhir.jpa.util.MemoryCacheService;
import ca.uhn.fhir.rest.api.Constants;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.exceptions.ResourceVersionConflictException;
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.test.BaseTest;
import ca.uhn.fhir.test.utilities.LoggingExtension;
import ca.uhn.fhir.test.utilities.ProxyUtil;
@ -163,9 +163,9 @@ public abstract class BaseJpaTest extends BaseTest {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(BaseJpaTest.class);
static {
System.setProperty(Constants.TEST_SYSTEM_PROP_VALIDATION_RESOURCE_CACHES_MS, "1000");
System.setProperty("test", "true");
System.setProperty("unit_test_mode", "true");
HapiSystemProperties.setTestValidationResourceCachesMs(1000);
HapiSystemProperties.enableTestMode();
HapiSystemProperties.enableUnitTestMode();
TestUtil.setShouldRandomizeTimezones(false);
}

2
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/test/BaseValueSetHSearchExpansionR4Test.java
View File

@ -61,8 +61,6 @@ import org.hibernate.search.mapper.orm.common.EntityReference;
import org.hibernate.search.mapper.orm.session.SearchSession;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r4.model.CodeSystem;
import org.hl7.fhir.r4.model.CodeableConcept;
import org.hl7.fhir.r4.model.Coding;
import org.hl7.fhir.r4.model.ValueSet;
import org.junit.jupiter.api.AfterEach;
import org.junit.jupiter.api.BeforeEach;

3
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/test/config/TestDstu2Config.java
View File

@ -30,6 +30,7 @@ import ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect;
import ca.uhn.fhir.jpa.util.CircularQueueCaptureQueriesListener;
import ca.uhn.fhir.jpa.util.CurrentThreadCaptureQueriesListener;
import ca.uhn.fhir.rest.server.interceptor.RequestValidatingInterceptor;
import ca.uhn.fhir.system.HapiTestSystemProperties;
import ca.uhn.fhir.validation.IInstanceValidatorModule;
import ca.uhn.fhir.validation.ResultSeverityEnum;
import net.ttddyy.dsproxy.listener.ThreadQueryCountHolder;
@ -76,7 +77,7 @@ public class TestDstu2Config {
*/
ourMaxThreads = (int) (Math.random() * 6.0) + 2;
if ("true".equals(System.getProperty("single_db_connection"))) {
if (HapiTestSystemProperties.isSingleDbConnectionEnabled()) {
ourMaxThreads = 1;
}

5
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/test/config/TestDstu3Config.java
View File

@ -26,17 +26,16 @@ import ca.uhn.fhir.jpa.batch2.JpaBatch2Config;
import ca.uhn.fhir.jpa.config.HapiJpaConfig;
import ca.uhn.fhir.jpa.config.dstu3.JpaDstu3Config;
import ca.uhn.fhir.jpa.config.util.HapiEntityManagerFactoryUtil;
import ca.uhn.fhir.jpa.dao.mdm.MdmLinkDaoJpaImpl;
import ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect;
import ca.uhn.fhir.jpa.subscription.match.deliver.email.EmailSenderImpl;
import ca.uhn.fhir.jpa.subscription.match.deliver.email.IEmailSender;
import ca.uhn.fhir.jpa.util.CircularQueueCaptureQueriesListener;
import ca.uhn.fhir.jpa.util.CurrentThreadCaptureQueriesListener;
import ca.uhn.fhir.mdm.dao.IMdmLinkDao;
import ca.uhn.fhir.rest.server.interceptor.RequestValidatingInterceptor;
import ca.uhn.fhir.rest.server.mail.IMailSvc;
import ca.uhn.fhir.rest.server.mail.MailConfig;
import ca.uhn.fhir.rest.server.mail.MailSvc;
import ca.uhn.fhir.system.HapiTestSystemProperties;
import ca.uhn.fhir.validation.ResultSeverityEnum;
import net.ttddyy.dsproxy.support.ProxyDataSourceBuilder;
import org.apache.commons.dbcp2.BasicDataSource;
@ -141,7 +140,7 @@ public class TestDstu3Config {
*/
int maxThreads = (int) (Math.random() * 6.0) + 2;
if ("true".equals(System.getProperty("single_db_connection"))) {
if (HapiTestSystemProperties.isSingleDbConnectionEnabled()) {
maxThreads = 1;
}

4
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/test/config/TestJPAConfig.java
View File

@ -36,10 +36,10 @@ import ca.uhn.fhir.jpa.subscription.match.deliver.resthook.SubscriptionDeliverin
import ca.uhn.fhir.jpa.subscription.submit.config.SubscriptionSubmitterConfig;
import ca.uhn.fhir.jpa.term.TermCodeSystemDeleteJobSvcWithUniTestFailures;
import ca.uhn.fhir.jpa.term.api.ITermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.term.api.TermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.test.Batch2JobHelper;
import ca.uhn.fhir.jpa.test.util.StoppableSubscriptionDeliveringRestHookSubscriber;
import ca.uhn.fhir.jpa.test.util.SubscriptionTestUtil;
import ca.uhn.fhir.system.HapiTestSystemProperties;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Import;
@ -62,7 +62,7 @@ public class TestJPAConfig {
public DaoConfig daoConfig() {
DaoConfig retVal = new DaoConfig();
if ("true".equals(System.getProperty("mass_ingestion_mode"))) {
if (HapiTestSystemProperties.isMassIngestionModeEnabled()) {
retVal.setMassIngestionMode(true);
}

6
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/test/config/TestR4BConfig.java
View File

@ -26,13 +26,13 @@ import ca.uhn.fhir.jpa.batch2.JpaBatch2Config;
import ca.uhn.fhir.jpa.binary.api.IBinaryStorageSvc;
import ca.uhn.fhir.jpa.binstore.MemoryBinaryStorageSvcImpl;
import ca.uhn.fhir.jpa.config.HapiJpaConfig;
import ca.uhn.fhir.jpa.config.r4.JpaR4Config;
import ca.uhn.fhir.jpa.config.r4b.JpaR4BConfig;
import ca.uhn.fhir.jpa.config.util.HapiEntityManagerFactoryUtil;
import ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect;
import ca.uhn.fhir.jpa.util.CircularQueueCaptureQueriesListener;
import ca.uhn.fhir.jpa.util.CurrentThreadCaptureQueriesListener;
import ca.uhn.fhir.rest.server.interceptor.RequestValidatingInterceptor;
import ca.uhn.fhir.system.HapiTestSystemProperties;
import ca.uhn.fhir.validation.ResultSeverityEnum;
import net.ttddyy.dsproxy.listener.SingleQueryCountHolder;
import net.ttddyy.dsproxy.listener.logging.SLF4JLogLevel;
@ -83,10 +83,10 @@ public class TestR4BConfig {
if (ourMaxThreads == null) {
ourMaxThreads = (int) (Math.random() * 6.0) + 3;
if ("true".equals(System.getProperty("single_db_connection"))) {
if (HapiTestSystemProperties.isSingleDbConnectionEnabled()) {
ourMaxThreads = 1;
}
if ("true".equals(System.getProperty("unlimited_db_connection"))) {
if (HapiTestSystemProperties.isUnlimitedDbConnectionsEnabled()) {
ourMaxThreads = 100;
}
}

5
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/test/config/TestR4Config.java
View File

@ -32,6 +32,7 @@ import ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect;
import ca.uhn.fhir.jpa.util.CircularQueueCaptureQueriesListener;
import ca.uhn.fhir.jpa.util.CurrentThreadCaptureQueriesListener;
import ca.uhn.fhir.rest.server.interceptor.RequestValidatingInterceptor;
import ca.uhn.fhir.system.HapiTestSystemProperties;
import ca.uhn.fhir.validation.ResultSeverityEnum;
import net.ttddyy.dsproxy.listener.SingleQueryCountHolder;
import net.ttddyy.dsproxy.listener.logging.SLF4JLogLevel;
@ -82,10 +83,10 @@ public class TestR4Config {
if (ourMaxThreads == null) {
ourMaxThreads = (int) (Math.random() * 6.0) + 3;
if ("true".equals(System.getProperty("single_db_connection"))) {
if (HapiTestSystemProperties.isSingleDbConnectionEnabled()) {
ourMaxThreads = 1;
}
if ("true".equals(System.getProperty("unlimited_db_connection"))) {
if (HapiTestSystemProperties.isUnlimitedDbConnectionsEnabled()) {
ourMaxThreads = 100;
}
}

3
hapi-fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/test/config/TestR5Config.java
View File

@ -32,6 +32,7 @@ import ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect;
import ca.uhn.fhir.jpa.util.CircularQueueCaptureQueriesListener;
import ca.uhn.fhir.jpa.util.CurrentThreadCaptureQueriesListener;
import ca.uhn.fhir.rest.server.interceptor.RequestValidatingInterceptor;
import ca.uhn.fhir.system.HapiTestSystemProperties;
import ca.uhn.fhir.validation.ResultSeverityEnum;
import net.ttddyy.dsproxy.listener.SingleQueryCountHolder;
import net.ttddyy.dsproxy.support.ProxyDataSourceBuilder;
@ -78,7 +79,7 @@ public class TestR5Config {
if (ourMaxThreads == null) {
ourMaxThreads = (int) (Math.random() * 6.0) + 2;
if ("true".equals(System.getProperty("single_db_connection"))) {
if (HapiTestSystemProperties.isSingleDbConnectionEnabled()) {
ourMaxThreads = 1;
}

5
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/dao/DaoConfigTest.java
View File

@ -2,6 +2,7 @@ package ca.uhn.fhir.jpa.dao;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.jpa.api.config.DaoConfig;
import ca.uhn.fhir.system.HapiSystemProperties;
import org.junit.jupiter.api.Test;
import java.util.Arrays;
@ -37,9 +38,9 @@ public class DaoConfigTest {
@Test
public void testDisableStatusBasedReindexUsingSystemProperty() {
assertEquals(false, new DaoConfig().isStatusBasedReindexingDisabled());
System.setProperty(DaoConfig.DISABLE_STATUS_BASED_REINDEX, "true");
HapiSystemProperties.disableStatusBasedReindex();
assertEquals(true, new DaoConfig().isStatusBasedReindexingDisabled());
System.clearProperty(DaoConfig.DISABLE_STATUS_BASED_REINDEX);
HapiSystemProperties.enableStatusBasedReindex();
}
}

3
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/term/LoincFullLoadR4SandboxIT.java
View File

@ -19,6 +19,7 @@ import ca.uhn.fhir.jpa.term.loinc.LoincMapToHandler;
import ca.uhn.fhir.jpa.test.BaseJpaTest;
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
import ca.uhn.fhir.jpa.test.config.TestR4Config;
import ca.uhn.fhir.system.HapiTestSystemProperties;
import ca.uhn.fhir.util.StopWatch;
import com.google.common.collect.ArrayListMultimap;
import com.google.common.collect.Multimap;
@ -162,7 +163,7 @@ public class LoincFullLoadR4SandboxIT extends BaseJpaTest {
);
static {
System.setProperty("unlimited_db_connection", "true");
HapiTestSystemProperties.enableUnlimitedDbConnections();
}
// -----------------------------------------------------------------------------------------

9
hapi-fhir-jpaserver-uhnfhirtest/src/main/java/ca/uhn/fhirtest/TestRestfulServer.java
View File

@ -1,19 +1,18 @@
package ca.uhn.fhirtest;
import ca.uhn.fhir.batch2.jobs.reindex.ReindexProvider;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.support.IValidationSupport;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
import ca.uhn.fhir.jpa.api.config.DaoConfig;
import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
import ca.uhn.fhir.jpa.bulk.export.provider.BulkDataExportProvider;
import ca.uhn.fhir.jpa.delete.ThreadSafeResourceDeleterSvc;
import ca.uhn.fhir.jpa.graphql.GraphQLProvider;
import ca.uhn.fhir.jpa.interceptor.CascadingDeleteInterceptor;
import ca.uhn.fhir.jpa.provider.DiffProvider;
import ca.uhn.fhir.jpa.graphql.GraphQLProvider;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;
import ca.uhn.fhir.jpa.provider.JpaCapabilityStatementProvider;
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu2;
import ca.uhn.fhir.jpa.provider.JpaSystemProvider;
@ -21,11 +20,10 @@ import ca.uhn.fhir.jpa.provider.TerminologyUploaderProvider;
import ca.uhn.fhir.jpa.provider.ValueSetOperationProvider;
import ca.uhn.fhir.jpa.provider.dstu3.JpaConformanceProviderDstu3;
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
import ca.uhn.fhir.rest.openapi.OpenApiInterceptor;
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
import ca.uhn.fhir.jpa.subscription.match.config.WebsocketDispatcherConfig;
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;
import ca.uhn.fhir.rest.api.EncodingEnum;
import ca.uhn.fhir.rest.openapi.OpenApiInterceptor;
import ca.uhn.fhir.rest.server.ETagSupportEnum;
import ca.uhn.fhir.rest.server.ElementsSupportEnum;
import ca.uhn.fhir.rest.server.HardcodedServerAddressStrategy;
@ -36,6 +34,7 @@ import ca.uhn.fhir.rest.server.interceptor.FhirPathFilterInterceptor;
import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
import ca.uhn.fhir.rest.server.interceptor.ResponseHighlighterInterceptor;
import ca.uhn.fhir.rest.server.provider.ResourceProviderFactory;
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
import ca.uhn.fhirtest.config.SqlCaptureInterceptor;
import ca.uhn.fhirtest.config.TestDstu2Config;
import ca.uhn.fhirtest.config.TestDstu3Config;

1
hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/server/RestfulServer.java
View File

@ -56,7 +56,6 @@ import ca.uhn.fhir.rest.server.interceptor.ExceptionHandlingInterceptor;
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
import ca.uhn.fhir.rest.server.method.BaseMethodBinding;
import ca.uhn.fhir.rest.server.method.ConformanceMethodBinding;
import ca.uhn.fhir.rest.server.method.BaseMethodBinding;
import ca.uhn.fhir.rest.server.method.MethodMatchEnum;
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
import ca.uhn.fhir.rest.server.tenant.ITenantIdentificationStrategy;

2
hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/server/method/BaseResourceReturningMethodBinding.java
View File

@ -1,9 +1,9 @@
package ca.uhn.fhir.rest.server.method;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.interceptor.api.HookParams;
import ca.uhn.fhir.interceptor.api.Pointcut;
import ca.uhn.fhir.model.api.IResource;

3
hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/server/method/ConformanceMethodBinding.java
View File

@ -39,6 +39,7 @@ import ca.uhn.fhir.rest.server.SimpleBundleProvider;
import ca.uhn.fhir.rest.server.exceptions.BaseServerResponseException;
import ca.uhn.fhir.rest.server.exceptions.MethodNotAllowedException;
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
import ca.uhn.fhir.system.HapiSystemProperties;
import org.hl7.fhir.instance.model.api.IBaseConformance;
import javax.annotation.Nonnull;
@ -136,7 +137,7 @@ public class ConformanceMethodBinding extends BaseResourceReturningMethodBinding
conf = null;
else {
conf = myCachedResponse.get();
if ("true".equals(System.getProperty("test"))) {
if (HapiSystemProperties.isTestModeEnabled()) {
conf = null;
}
if (conf != null) {

3
hapi-fhir-sql-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/HapiMigrator.java
View File

@ -24,6 +24,7 @@ import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.jpa.migrate.dao.HapiMigrationDao;
import ca.uhn.fhir.jpa.migrate.taskdef.BaseTask;
import ca.uhn.fhir.jpa.migrate.taskdef.InitializeSchemaTask;
import ca.uhn.fhir.system.HapiSystemProperties;
import ca.uhn.fhir.util.StopWatch;
import com.google.common.annotations.VisibleForTesting;
import org.apache.commons.lang3.Validate;
@ -171,7 +172,7 @@ public class HapiMigrator {
}
public void addTasks(Iterable<BaseTask> theMigrationTasks) {
if ("true".equals(System.getProperty("unit_test_mode"))) {
if (HapiSystemProperties.isUnitTestModeEnabled()) {
// Tests only need to initialize the schemas. No need to run all the migrations for every test.
for (BaseTask task : theMigrationTasks) {
if (task instanceof InitializeSchemaTask) {

3
hapi-fhir-sql-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/taskdef/BaseTask.java
View File

@ -23,6 +23,7 @@ package ca.uhn.fhir.jpa.migrate.taskdef;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.jpa.migrate.DriverTypeEnum;
import ca.uhn.fhir.jpa.migrate.HapiMigrationException;
import ca.uhn.fhir.system.HapiSystemProperties;
import org.apache.commons.lang3.Validate;
import org.apache.commons.lang3.builder.EqualsBuilder;
import org.apache.commons.lang3.builder.HashCodeBuilder;
@ -187,7 +188,7 @@ public abstract class BaseTask {
jdbcTemplate.setQueryTimeout(0);
try {
int changesCount = jdbcTemplate.update(theSql, theArguments);
if (!"true".equals(System.getProperty("unit_test_mode"))) {
if (!HapiSystemProperties.isUnitTestModeEnabled()) {
logInfo(ourLog, "SQL \"{}\" returned {}", theSql, changesCount);
}
return changesCount;

3
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/export/FetchResourceIdsStep.java
View File

@ -26,12 +26,11 @@ import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
import ca.uhn.fhir.batch2.api.RunOutcome;
import ca.uhn.fhir.batch2.api.StepExecutionDetails;
import ca.uhn.fhir.batch2.api.VoidModel;
import ca.uhn.fhir.batch2.jobs.export.models.ResourceIdList;
import ca.uhn.fhir.batch2.jobs.export.models.BulkExportJobParameters;
import ca.uhn.fhir.batch2.jobs.export.models.ResourceIdList;
import ca.uhn.fhir.batch2.jobs.models.Id;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.jpa.api.config.DaoConfig;
import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
import ca.uhn.fhir.jpa.bulk.export.api.IBulkExportProcessor;
import ca.uhn.fhir.jpa.bulk.export.model.ExportPIDIteratorParameters;
import ca.uhn.fhir.rest.api.server.storage.ResourcePersistentId;

4
hapi-fhir-storage-batch2-jobs/src/test/java/ca/uhn/fhir/batch2/jobs/export/BulkExportJobParametersValidatorTest.java
View File

@ -2,8 +2,6 @@ package ca.uhn.fhir.batch2.jobs.export;
import ca.uhn.fhir.batch2.jobs.export.models.BulkExportJobParameters;
import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
import ca.uhn.fhir.jpa.api.model.BulkExportJobInfo;
import ca.uhn.fhir.jpa.bulk.export.api.IBulkExportProcessor;
import ca.uhn.fhir.rest.api.Constants;
import ca.uhn.fhir.rest.api.server.bulk.BulkDataExportOptions;
import org.junit.jupiter.api.Test;
@ -12,7 +10,6 @@ import org.mockito.InjectMocks;
import org.mockito.Mock;
import org.mockito.junit.jupiter.MockitoExtension;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
@ -21,7 +18,6 @@ import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertFalse;
import static org.junit.jupiter.api.Assertions.assertNotNull;
import static org.junit.jupiter.api.Assertions.assertTrue;
import static org.mockito.ArgumentMatchers.any;
import static org.mockito.ArgumentMatchers.anyString;
import static org.mockito.Mockito.when;

1
hapi-fhir-storage-batch2/src/main/java/ca/uhn/fhir/batch2/coordinator/JobDefinitionRegistry.java
View File

@ -28,7 +28,6 @@ import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.jpa.batch.log.Logs;
import ca.uhn.fhir.model.api.IModelJson;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import com.google.common.collect.ImmutableSortedMap;
import org.apache.commons.lang3.Validate;
import org.slf4j.Logger;

2
hapi-fhir-storage-batch2/src/test/java/ca/uhn/fhir/batch2/coordinator/JobCoordinatorImplTest.java
View File

@ -22,7 +22,6 @@ import ca.uhn.fhir.jpa.batch.models.Batch2JobStartResponse;
import ca.uhn.fhir.jpa.subscription.channel.api.IChannelReceiver;
import ca.uhn.fhir.jpa.subscription.channel.impl.LinkedBlockingChannel;
import ca.uhn.fhir.model.api.IModelJson;
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import com.google.common.collect.Lists;
import org.junit.jupiter.api.AfterEach;
@ -44,7 +43,6 @@ import java.util.Optional;
import java.util.concurrent.atomic.AtomicInteger;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertNotEquals;
import static org.junit.jupiter.api.Assertions.assertNull;
import static org.junit.jupiter.api.Assertions.assertTrue;
import static org.junit.jupiter.api.Assertions.fail;

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