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Add OperationOutcome narrative template

This commit is contained in:
jamesagnew 2014-08-11 09:09:01 -04:00
parent 04bc96ff8e
commit e2b9b3318d
30 changed files with 1173 additions and 129 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
hapi-fhir-base/pom.xml
View File

@ -47,6 +47,7 @@
</dependency> </dependency>
<!-- Only required for OpenID Connect Support --> <!-- Only required for OpenID Connect Support -->
<!--
<dependency> <dependency>
<groupId>org.mitre</groupId> <groupId>org.mitre</groupId>
<artifactId>openid-connect-client</artifactId> <artifactId>openid-connect-client</artifactId>
@ -59,6 +60,7 @@
<version>2.0.2.RELEASE</version> <version>2.0.2.RELEASE</version>
<optional>true</optional> <optional>true</optional>
</dependency> </dependency>
-->
<!-- <!--
--> -->

3
hapi-fhir-base/src/changes/changes.xml
View File

@ -64,6 +64,9 @@
bundle (generally these are referenced resources, so they are populated in the reference fields instead). bundle (generally these are referenced resources, so they are populated in the reference fields instead).
Thanks to Tahura Chaudhry of University Health Network for the unit test! Thanks to Tahura Chaudhry of University Health Network for the unit test!
</action> </action>
<action type="add">
Added narrative generator template for OperationOutcome resource
</action>
</release> </release>
<release version="0.5" date="2014-Jul-30"> <release version="0.5" date="2014-Jul-30">
<action type="add"> <action type="add">

39
hapi-fhir-base/src/main/java/ca/uhn/fhir/narrative/BaseThymeleafNarrativeGenerator.java
View File

@ -301,9 +301,11 @@ public abstract class BaseThymeleafNarrativeGenerator implements INarrativeGener
} }
/** /**
* If set to <code>true</code> (which is the default), most whitespace will be trimmed from the generated narrative before it is returned. * If set to <code>true</code> (which is the default), most whitespace will be trimmed from the generated narrative
* before it is returned.
* <p> * <p>
* Note that in order to preserve formatting, not all whitespace is trimmed. Repeated whitespace characters (e.g. "\n \n ") will be trimmed to a single space. * Note that in order to preserve formatting, not all whitespace is trimmed. Repeated whitespace characters (e.g.
* "\n \n ") will be trimmed to a single space.
* </p> * </p>
*/ */
public boolean isCleanWhitespace() { public boolean isCleanWhitespace() {
@ -311,8 +313,9 @@ public abstract class BaseThymeleafNarrativeGenerator implements INarrativeGener
} }
/** /**
* If set to <code>true</code>, which is the default, if any failure occurs during narrative generation the generator will suppress any generated exceptions, and simply return a default narrative * If set to <code>true</code>, which is the default, if any failure occurs during narrative generation the
* indicating that no narrative is available. * generator will suppress any generated exceptions, and simply return a default narrative indicating that no
* narrative is available.
*/ */
public boolean isIgnoreFailures() { public boolean isIgnoreFailures() {
return myIgnoreFailures; return myIgnoreFailures;
@ -429,9 +432,11 @@ public abstract class BaseThymeleafNarrativeGenerator implements INarrativeGener
} }
/** /**
* If set to <code>true</code> (which is the default), most whitespace will be trimmed from the generated narrative before it is returned. * If set to <code>true</code> (which is the default), most whitespace will be trimmed from the generated narrative
* before it is returned.
* <p> * <p>
* Note that in order to preserve formatting, not all whitespace is trimmed. Repeated whitespace characters (e.g. "\n \n ") will be trimmed to a single space. * Note that in order to preserve formatting, not all whitespace is trimmed. Repeated whitespace characters (e.g.
* "\n \n ") will be trimmed to a single space.
* </p> * </p>
*/ */
public void setCleanWhitespace(boolean theCleanWhitespace) { public void setCleanWhitespace(boolean theCleanWhitespace) {
@ -439,8 +444,9 @@ public abstract class BaseThymeleafNarrativeGenerator implements INarrativeGener
} }
/** /**
* If set to <code>true</code>, which is the default, if any failure occurs during narrative generation the generator will suppress any generated exceptions, and simply return a default narrative * If set to <code>true</code>, which is the default, if any failure occurs during narrative generation the
* indicating that no narrative is available. * generator will suppress any generated exceptions, and simply return a default narrative indicating that no
* narrative is available.
*/ */
public void setIgnoreFailures(boolean theIgnoreFailures) { public void setIgnoreFailures(boolean theIgnoreFailures) {
myIgnoreFailures = theIgnoreFailures; myIgnoreFailures = theIgnoreFailures;
@ -458,9 +464,13 @@ public abstract class BaseThymeleafNarrativeGenerator implements INarrativeGener
boolean inWhitespace = false; boolean inWhitespace = false;
boolean betweenTags = false; boolean betweenTags = false;
boolean lastNonWhitespaceCharWasTagEnd = false; boolean lastNonWhitespaceCharWasTagEnd = false;
boolean inPre = false;
for (int i = 0; i < theResult.length(); i++) { for (int i = 0; i < theResult.length(); i++) {
char nextChar = theResult.charAt(i); char nextChar = theResult.charAt(i);
if (nextChar == '>') { if (inPre) {
b.append(nextChar);
continue;
} else if (nextChar == '>') {
b.append(nextChar); b.append(nextChar);
betweenTags = true; betweenTags = true;
lastNonWhitespaceCharWasTagEnd = true; lastNonWhitespaceCharWasTagEnd = true;
@ -485,6 +495,17 @@ public abstract class BaseThymeleafNarrativeGenerator implements INarrativeGener
inWhitespace = false; inWhitespace = false;
betweenTags = false; betweenTags = false;
lastNonWhitespaceCharWasTagEnd = false; lastNonWhitespaceCharWasTagEnd = false;
if (i + 3 < theResult.length()) {
char char1 = Character.toLowerCase(theResult.charAt(i + 1));
char char2 = Character.toLowerCase(theResult.charAt(i + 2));
char char3 = Character.toLowerCase(theResult.charAt(i + 3));
char char4 = Character.toLowerCase((i + 4 < theResult.length()) ? theResult.charAt(i + 4) : ' ');
if (char1 == 'p' && char2 == 'r' && char3 == 'e') {
inPre = true;
} else if (char1 == '/' && char2 == 'p' && char3 == 'r'&&char4=='e') {
inPre = false;
}
}
} else { } else {
lastNonWhitespaceCharWasTagEnd = false; lastNonWhitespaceCharWasTagEnd = false;
if (inWhitespace) { if (inWhitespace) {

22
hapi-fhir-base/src/main/resources/ca/uhn/fhir/narrative/OperationOutcome.html Normal file
View File

@ -0,0 +1,22 @@
<!--/*-->
<html>
<head>
<link rel="stylesheet" type="text/css" href="narrative.css"/>
</head>
<body>
<!--*/-->
<div>
<h1>Operation Outcome</h1>
<table border="0">
<tr th:each="issue : ${resource.issue}">
<td th:text="${issue.severity.value}" style="font-weight: bold;"></td>
<td th:text="${issue.location}"></td>
<td><pre th:text="${issue.details}"/></td>
</tr>
</table>
</div>
<!--/*-->
</body>
</html>
<!--*/-->

4
hapi-fhir-base/src/main/resources/ca/uhn/fhir/narrative/narratives.properties
View File

@ -49,6 +49,10 @@ diagnosticreport.title=classpath:ca/uhn/fhir/narrative/title/DiagnosticReport.ht
encounter.class=ca.uhn.fhir.model.dstu.resource.Encounter encounter.class=ca.uhn.fhir.model.dstu.resource.Encounter
encounter.title=classpath:ca/uhn/fhir/narrative/title/Encounter.html encounter.title=classpath:ca/uhn/fhir/narrative/title/Encounter.html
operationoutcome.class=ca.uhn.fhir.model.dstu.resource.OperationOutcome
operationoutcome.title=classpath:ca/uhn/fhir/narrative/title/OperationOutcome.html
operationoutcome.narrative=classpath:ca/uhn/fhir/narrative/OperationOutcome.html
organization.class=ca.uhn.fhir.model.dstu.resource.Organization organization.class=ca.uhn.fhir.model.dstu.resource.Organization
organization.title=classpath:ca/uhn/fhir/narrative/title/Organization.html organization.title=classpath:ca/uhn/fhir/narrative/title/Organization.html

5
hapi-fhir-base/src/main/resources/ca/uhn/fhir/narrative/title/OperationOutcome.html Normal file
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@ -0,0 +1,5 @@
<div>
Operation Outcome
<th:block th:if="${resource.issue.size} == 1" th:text="'(' + ${resource.issueFirstRep.severity.value} + ')'"/>
<th:block th:if="${resource.issue.size} != 1" th:text="'(' + ${resource.issue.size} + ' issues)'"/>
</div>

47
hapi-fhir-base/src/test/java/ca/uhn/fhir/narrative/DefaultThymeleafNarrativeGeneratorTest.java
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File diff suppressed because one or more lines are too long

1
hapi-fhir-base/src/test/java/ca/uhn/fhir/rest/server/CorsTest.java
View File

@ -115,7 +115,6 @@ public class CorsTest {
IOUtils.closeQuietly(status.getEntity().getContent()); IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info("Response: {}", status); ourLog.info("Response: {}", status);
ourLog.info("Response was:\n{}", responseContent); ourLog.info("Response was:\n{}", responseContent);
assertEquals("POST", status.getFirstHeader(Constants.HEADER_CORS_ALLOW_METHODS).getValue());
assertEquals("http://www.fhir-starter.com", status.getFirstHeader(Constants.HEADER_CORS_ALLOW_ORIGIN).getValue()); assertEquals("http://www.fhir-starter.com", status.getFirstHeader(Constants.HEADER_CORS_ALLOW_ORIGIN).getValue());
} }
} finally { } finally {

2
hapi-fhir-jpaserver-uhnfhirtest/.settings/org.eclipse.wst.common.component
View File

@ -12,7 +12,7 @@
<dependent-module archiveName="hapi-fhir-base-0.6-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-base/hapi-fhir-base"> <dependent-module archiveName="hapi-fhir-base-0.6-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-base/hapi-fhir-base">
<dependency-type>uses</dependency-type> <dependency-type>uses</dependency-type>
</dependent-module> </dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/prj/hapi-fhir-testpage-overlay?includes=**/**&amp;excludes=META-INF/MANIFEST.MF"> <dependent-module deploy-path="/" handle="module:/overlay/var/M2_REPO/ca/uhn/hapi/fhir/hapi-fhir-testpage-overlay/0.6-SNAPSHOT/hapi-fhir-testpage-overlay-0.6-SNAPSHOT.war?unpackFolder=target/m2e-wtp/overlays&amp;includes=**/**&amp;excludes=META-INF/MANIFEST.MF">
<dependency-type>consumes</dependency-type> <dependency-type>consumes</dependency-type>
</dependent-module> </dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/slf/?includes=**/**&amp;excludes=META-INF/MANIFEST.MF"> <dependent-module deploy-path="/" handle="module:/overlay/slf/?includes=**/**&amp;excludes=META-INF/MANIFEST.MF">

26
hapi-fhir-mitreid-integration/.classpath Normal file
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@ -0,0 +1,26 @@
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="src" output="target/classes" path="src/main/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="src" output="target/test-classes" path="src/test/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="output" path="target/classes"/>
</classpath>

1
hapi-fhir-mitreid-integration/.gitignore vendored Normal file
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@ -0,0 +1 @@
/target/

23
hapi-fhir-mitreid-integration/.project Normal file
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@ -0,0 +1,23 @@
<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>hapi-fhir-mitreid-integration</name>
<comment></comment>
<projects>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.m2e.core.maven2Builder</name>
<arguments>
</arguments>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.jdt.core.javanature</nature>
<nature>org.eclipse.m2e.core.maven2Nature</nature>
</natures>
</projectDescription>

2
hapi-fhir-mitreid-integration/.settings/org.eclipse.core.resources.prefs Normal file
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@ -0,0 +1,2 @@
eclipse.preferences.version=1
encoding/<project>=UTF-8

5
hapi-fhir-mitreid-integration/.settings/org.eclipse.jdt.core.prefs Normal file
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@ -0,0 +1,5 @@
eclipse.preferences.version=1
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
org.eclipse.jdt.core.compiler.compliance=1.6
org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
org.eclipse.jdt.core.compiler.source=1.6

4
hapi-fhir-mitreid-integration/.settings/org.eclipse.m2e.core.prefs Normal file
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@ -0,0 +1,4 @@
activeProfiles=
eclipse.preferences.version=1
resolveWorkspaceProjects=true
version=1

528
hapi-fhir-mitreid-integration/pom.xml Normal file
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@ -0,0 +1,528 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.6-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-mitreid-integration</artifactId>
<packaging>jar</packaging>
<name>HAPI FHIR - MitreID Integration Module</name>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.6-SNAPSHOT</version>
</dependency>
<!-- Only required for OpenID Connect Support -->
<dependency>
<groupId>org.mitre</groupId>
<artifactId>openid-connect-client</artifactId>
<version>${mitreid-connect-version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security.oauth</groupId>
<artifactId>spring-security-oauth2</artifactId>
<version>2.0.2.RELEASE</version>
</dependency>
<!-- Server -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.1.0</version>
<scope>provided</scope>
</dependency>
<!-- Testing -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>xmlunit</groupId>
<artifactId>xmlunit</artifactId>
<version>1.5</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlets</artifactId>
<version>9.1.1.v20140108</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<version>9.1.1.v20140108</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
<version>9.1.1.v20140108</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<version>9.1.1.v20140108</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
<version>9.1.1.v20140108</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-webapp</artifactId>
<version>9.1.1.v20140108</version>
<scope>test</scope>
</dependency>
<!-- UNIT TEST DEPENDENCIES -->
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<version>1.9.5</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>hamcrest-all</artifactId>
<version>${hamcrest_version}</version>
<scope>test</scope>
</dependency>
<!--
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-web</artifactId>
<version>${spring_security_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-config</artifactId>
<version>${spring_security_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-jwt</artifactId>
<version>1.0.2.RELEASE</version>
<scope>test</scope>
</dependency>
-->
</dependencies>
<reporting>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-changes-plugin</artifactId>
<version>2.10</version>
<inherited>false</inherited>
<reportSets>
<reportSet>
<reports>
<report>changes-report</report>
</reports>
</reportSet>
</reportSets>
<configuration>
<feedType>atom_1.0</feedType>
<issueLinkTemplatePerSystem>
<default>http://sourceforge.net/support/tracker.php?aid=%ISSUE%</default>
<newbugs>https://sourceforge.net/p/hl7api/bugs/%ISSUE%/</newbugs>
<newfeatures>https://sourceforge.net/p/hl7api/feature-requests/%ISSUE%/</newfeatures>
</issueLinkTemplatePerSystem>
<escapeHTML>false</escapeHTML>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-report-plugin</artifactId>
<version>2.16</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.9.1</version>
<configuration>
</configuration>
<reportSets>
<reportSet>
<id>default</id>
<reports>
<report>javadoc</report>
</reports>
</reportSet>
</reportSets>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
<version>2.5.3</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jxr-plugin</artifactId>
<version>2.4</version>
<reportSets>
<reportSet>
<id>normal</id>
<reports>
<report>jxr</report>
</reports>
</reportSet>
<reportSet>
<id>restful-server-example</id>
<reports>
<report>jxr</report>
</reports>
<configuration>
<sourcePath>../restful-server-example/src/main/java</sourcePath>
<destDir>${project.reporting.outputDirectory}/rse-xref</destDir>
<outputDirectory>tmp</outputDirectory>
<reportOutputDirectory>rse-xref</reportOutputDirectory>
</configuration>
</reportSet>
</reportSets>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-project-info-reports-plugin</artifactId>
<version>2.7</version>
<reportSets>
<reportSet>
<reports>
<report>project-team</report>
<report>issue-tracking</report>
<report>license</report>
<report>scm</report>
</reports>
</reportSet>
</reportSets>
</plugin>
<!-- <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-linkcheck-plugin</artifactId> <version>1.1</version> </plugin> -->
</plugins>
</reporting>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<siteMainDirectory>${user.home}/sites/hapi-fhir</siteMainDirectory>
<scmPubCheckoutDirectory>${user.home}/sites/scm/hapi-fhir</scmPubCheckoutDirectory>
</properties>
<build>
<pluginManagement>
<plugins>
<plugin>
<artifactId>maven-site-plugin</artifactId>
<configuration>
<skip>false</skip>
<skipDeploy>true</skipDeploy>
</configuration>
<dependencies>
<dependency>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-scm</artifactId>
<version>2.2</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-manager-plexus</artifactId>
<version>1.9</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-provider-gitexe</artifactId>
<version>1.9</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-api</artifactId>
<version>1.9</version>
</dependency>
</dependencies>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<plugin>
<artifactId>maven-antrun-plugin</artifactId>
<version>1.7</version>
<executions>
<execution>
<id>addSyntaxHighlighter</id>
<phase>site</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<target>
<echo>Adding Syntax Highlighter</echo>
<replace dir="target/site" summary="true">
<include name="*.html"></include>
<replacetoken><![CDATA[</body>]]></replacetoken>
<replacevalue><![CDATA[
<script type="text/javascript">
var elements = document.getElementsByClassName("source");
for (var i=0; i < elements.length; i++) {
var pres = elements[i].getElementsByTagName("pre");
for (var j = 0; j < pres.length; j++) {
var pre = pres[j];
if (pre.innerHTML.match(/\/\*/)) {
pre.className = 'brush: java';
} else if (pre.innerHTML.match(/^\/\//)) {
pre.className = 'brush: java';
} else if (pre.innerHTML.match(/^\{/)) {
pre.className = 'brush: jscript';
} else if (pre.innerHTML.match(/^\#/)) {
pre.className = 'brush: bash';
} else if (pre.innerHTML.match(/\&lt\;\//)) {
pre.className = 'brush: xml';
} else {
pre.className = 'brush: java';
}
}
}
SyntaxHighlighter.all();
</script>
</body>
]]></replacevalue>
</replace>
</target>
</configuration>
</execution>
<execution>
<id>addAnalytics</id>
<phase>post-site</phase>
<configuration>
<target>
<echo>Adding Google analytics in target/site for &lt;body&gt;</echo>
<replace dir="target/site" summary="true">
<include name="**/*.html"></include>
<replacefilter token="#build#" value="${label}" />
<replacefilter token="#version#" value="${project.version}" />
<replacetoken><![CDATA[</body>]]></replacetoken>
<replacevalue><![CDATA[
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-1395874-5', 'auto');
ga('require', 'displayfeatures');
ga('require', 'linkid', 'linkid.js');
ga('send', 'pageview');
</script>
</body >
]]></replacevalue>
</replace>
<echo>Adding Google analytics in target/site for &lt;BODY&gt;</echo>
<replace dir="target/site" summary="true">
<include name="**/*.html"></include>
<replacetoken><![CDATA[</BODY>]]></replacetoken>
<replacevalue><![CDATA[
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
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ga('create', 'UA-1395874-5', 'auto');
ga('require', 'displayfeatures');
ga('require', 'linkid', 'linkid.js');
ga('send', 'pageview');
</script>
</BODY >
]]></replacevalue>
</replace>
<echo>Adding social plugins for HAPI</echo>
<replace dir="target/site/" summary="true">
<include name="**/*.html"></include>
<replacetoken><![CDATA[SOCIALPLUGINSHEREFHIR]]></replacetoken>
<replacevalue><![CDATA[
<table cellpadding="0" cellspacing="0" border="0"><tr>
<td><div class="g-plusone" data-annotation="inline" data-width="300" data-href="http://hl7api.sourceforge.net/"></div></td>
<td><div class="fb-like" data-href="http://hl7api.sourceforge.net/" data-send="false" data-layout="button_count" data-width="450" data-show-faces="true"></div></td>
</tr></table>
</p><p>
<!-- Place this tag after the last +1 button tag. -->
<script type="text/javascript">
(function() {
var po = document.createElement('script'); po.type = 'text/javascript'; po.async = true;
po.src = 'https://apis.google.com/js/plusone.js';
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(po, s);
})();
</script>
<div id="fb-root"></div>
<script>(function(d, s, id) {
var js, fjs = d.getElementsByTagName(s)[0];
if (d.getElementById(id)) return;
js = d.createElement(s); js.id = id;
js.src = "//connect.facebook.net/en_US/all.js#xfbml=1";
fjs.parentNode.insertBefore(js, fjs);
}(document, 'script', 'facebook-jssdk'));</script>
]]></replacevalue>
</replace>
</target>
</configuration>
<goals>
<goal>run</goal>
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<tryUpdate>true</tryUpdate>
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<id>scm-publish</id>
<phase>site-deploy</phase>
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<resource>
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<artifactId>maven-javadoc-plugin</artifactId>
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<goals>
<goal>single</goal>
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<configuration>
<attach>false</attach>
<descriptors>
<descriptor>${project.basedir}/src/assembly/hapi-fhir-all.xml</descriptor>
<!-- <descriptor>src/assembly/hapi-jdk14.xml</descriptor> -->
</descriptors>
</configuration>
</execution>
</executions>
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<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>license-maven-plugin</artifactId>
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<execution>
<id>first</id>
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</execution>
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</build>
</profile>
</profiles>
</project>

0
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/security/OpenIdConnectBearerTokenSecurityManager.java → hapi-fhir-mitreid-integration/src/main/java/ca/uhn/fhir/rest/server/security/OpenIdConnectBearerTokenSecurityManager.java
View File

0
hapi-fhir-base/src/test/java/ca/uhn/fhir/rest/server/security/OpenIdConnectBearerTokenSecurityManagerTest.java → hapi-fhir-mitreid-integration/src/test/java/ca/uhn/fhir/rest/server/security/OpenIdConnectBearerTokenSecurityManagerTest.java
View File

0
hapi-fhir-base/src/test/java/ca/uhn/fhir/rest/server/security/RestAuthenticationEntryPoint.java → hapi-fhir-mitreid-integration/src/test/java/ca/uhn/fhir/rest/server/security/RestAuthenticationEntryPoint.java
View File

205
hapi-fhir-testpage-overlay/.classpath
View File

@ -1,31 +1,180 @@
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<attribute value="jar:file:/Users/james/.m2/repository/org/springframework/spring-aop/4.0.1.RELEASE/spring-aop-4.0.1.RELEASE-javadoc.jar!/" name="javadoc_location"/>
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<attribute value="jar:file:/Users/james/.m2/repository/org/springframework/spring-beans/4.0.1.RELEASE/spring-beans-4.0.1.RELEASE-javadoc.jar!/" name="javadoc_location"/>
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<attributes>
<attribute value="jar:file:/Users/james/.m2/repository/org/springframework/spring-context/4.0.1.RELEASE/spring-context-4.0.1.RELEASE-javadoc.jar!/" name="javadoc_location"/>
</attributes>
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<attributes>
<attribute value="jar:file:/Users/james/.m2/repository/org/springframework/spring-jdbc/4.0.1.RELEASE/spring-jdbc-4.0.1.RELEASE-javadoc.jar!/" name="javadoc_location"/>
</attributes>
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</attributes>
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<attribute value="jar:file:/Users/james/.m2/repository/org/springframework/spring-tx/4.0.1.RELEASE/spring-tx-4.0.1.RELEASE-javadoc.jar!/" name="javadoc_location"/>
</attributes>
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<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
</classpath> </classpath>

34
hapi-fhir-testpage-overlay/.project
View File

@ -1,42 +1,16 @@
<?xml version="1.0" encoding="UTF-8"?>
<projectDescription> <projectDescription>
<name>hapi-fhir-tester-overlay</name> <name>hapi-fhir-testpage-overlay</name>
<comment></comment> <comment>NO_M2ECLIPSE_SUPPORT: Project files created with the maven-eclipse-plugin are not supported in M2Eclipse.</comment>
<projects> <projects>
<project>hapi-fhir-jpaserver-base</project>
<project>hapi-fhir-jpaserver-test</project>
</projects> </projects>
<buildSpec> <buildSpec>
<buildCommand>
<name>org.eclipse.wst.jsdt.core.javascriptValidator</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand> <buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name> <name>org.eclipse.jdt.core.javabuilder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.wst.common.project.facet.core.builder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.wst.validation.validationbuilder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.m2e.core.maven2Builder</name>
<arguments>
</arguments>
</buildCommand> </buildCommand>
</buildSpec> </buildSpec>
<natures> <natures>
<nature>org.eclipse.jem.workbench.JavaEMFNature</nature>
<nature>org.eclipse.wst.common.modulecore.ModuleCoreNature</nature>
<nature>org.eclipse.jdt.core.javanature</nature> <nature>org.eclipse.jdt.core.javanature</nature>
<nature>org.eclipse.m2e.core.maven2Nature</nature>
<nature>org.eclipse.wst.common.project.facet.core.nature</nature>
<nature>org.eclipse.wst.jsdt.core.jsNature</nature>
</natures> </natures>
</projectDescription> </projectDescription>

9
hapi-fhir-testpage-overlay/.settings/org.eclipse.jdt.core.prefs
View File

@ -1,8 +1,5 @@
eclipse.preferences.version=1 #Sun Aug 10 11:41:00 EDT 2014
org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6 org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
org.eclipse.jdt.core.compiler.compliance=1.6 eclipse.preferences.version=1
org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
org.eclipse.jdt.core.compiler.source=1.6 org.eclipse.jdt.core.compiler.source=1.6
org.eclipse.jdt.core.compiler.compliance=1.6

1
hapi-fhir-testpage-overlay/.settings/org.eclipse.wst.common.component
View File

@ -1 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId"/>

7
hapi-fhir-testpage-overlay/.settings/org.eclipse.wst.common.project.facet.core.xml
View File

@ -1,7 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<faceted-project>
<fixed facet="wst.jsdt.web"/>
<installed facet="java" version="1.6"/>
<installed facet="jst.web" version="2.5"/>
<installed facet="wst.jsdt.web" version="1.0"/>
</faceted-project>

28
hapi-fhir-testpage-overlay/pom.xml
View File

@ -1,5 +1,4 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
<parent> <parent>
@ -14,6 +13,16 @@
<name>HAPI FHIR TestPage Overlay</name> <name>HAPI FHIR TestPage Overlay</name>
<repositories>
<repository>
<id>oss-snapshots</id>
<snapshots>
<enabled>true</enabled>
</snapshots>
<url>https://oss.sonatype.org/content/repositories/snapshots/</url>
</repository>
</repositories>
<dependencies> <dependencies>
<dependency> <dependency>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
@ -63,6 +72,12 @@
<version>${hamcrest_version}</version> <version>${hamcrest_version}</version>
<scope>test</scope> <scope>test</scope>
</dependency> </dependency>
<dependency>
<groupId>net.sourceforge.htmlunit</groupId>
<artifactId>htmlunit</artifactId>
<version>2.16-SNAPSHOT</version>
<scope>test</scope>
</dependency>
<!-- Database --> <!-- Database -->
<dependency> <dependency>
@ -79,8 +94,7 @@
<version>${derby_version}</version> <version>${derby_version}</version>
<scope>test</scope> <scope>test</scope>
</dependency> </dependency>
<!-- <dependency> <groupId>org.hsqldb</groupId> <artifactId>hsqldb</artifactId> <!-- <dependency> <groupId>org.hsqldb</groupId> <artifactId>hsqldb</artifactId> <version>2.3.2</version> </dependency> -->
<version>2.3.2</version> </dependency> -->
<!-- Spring --> <!-- Spring -->
<dependency> <dependency>
@ -200,11 +214,9 @@
</goals> </goals>
<configuration> <configuration>
<target> <target>
<copy todir="${project.build.directory}/${project.build.finalName}/css" flatten="true" <copy todir="${project.build.directory}/${project.build.finalName}/css" flatten="true" failonerror="true">
failonerror="true">
<resources> <resources>
<file <file file="${basedir}/../hapi-fhir-base/src/main/resources/ca/uhn/fhir/narrative/hapi-narrative.css" />
file="${basedir}/../hapi-fhir-base/src/main/resources/ca/uhn/fhir/narrative/hapi-narrative.css" />
</resources> </resources>
</copy> </copy>
</target> </target>

4
hapi-fhir-testpage-overlay/src/main/webapp/js/ClientCodeGeneratorHapi.js
View File

@ -34,6 +34,10 @@ function generateHapiSearch(json, container) {
paramLine = '.where(new StringClientParam("' + nextParam.name + '")'; paramLine = '.where(new StringClientParam("' + nextParam.name + '")';
paramLine += nextParam.qualifier = ':exact' ? '.matchesExactly()' : '.matches()'; paramLine += nextParam.qualifier = ':exact' ? '.matchesExactly()' : '.matches()';
paramLine += '.value("' + nextParam.value + '"))'; paramLine += '.value("' + nextParam.value + '"))';
} else if (nextParam.type == 'id') {
paramLine = '.where(new StringClientParam("' + nextParam.name + '")';
paramLine += '.matches()';
paramLine += '.value("' + nextParam.value + '"))';
} else if (nextParam.type == 'token') { } else if (nextParam.type == 'token') {
var idx = nextParam.value.indexOf('|'); var idx = nextParam.value.indexOf('|');
if (idx == -1) { if (idx == -1) {

25
hapi-fhir-testpage-overlay/src/main/webapp/js/RestfulTester.js
View File

@ -63,7 +63,13 @@ function updateSearchDateQualifier(qualifierBtn, qualifierInput, qualifier) {
function addSearchControls(theConformance, theSearchParamType, theSearchParamName, theSearchParamChain, theSearchParamTarget, theContainerRowNum, theRowNum) { function addSearchControls(theConformance, theSearchParamType, theSearchParamName, theSearchParamChain, theSearchParamTarget, theContainerRowNum, theRowNum) {
var addNameAndType = true; var addNameAndType = true;
if (theSearchParamType == 'token') { if (theSearchParamType == 'id') {
$('#search-param-rowopts-' + theContainerRowNum).append(
$('<div />', { 'class': 'col-sm-3' }).append(
$('<input />', { id: 'param.' + theRowNum + '.0', placeholder: 'id', type: 'text', 'class': 'form-control' })
)
);
} else if (theSearchParamType == 'token') {
$('#search-param-rowopts-' + theContainerRowNum).append( $('#search-param-rowopts-' + theContainerRowNum).append(
$('<div />', { 'class': 'col-sm-3' }).append( $('<div />', { 'class': 'col-sm-3' }).append(
$('<input />', { id: 'param.' + theRowNum + '.0', placeholder: 'system/namespace', type: 'text', 'class': 'form-control' }) $('<input />', { id: 'param.' + theRowNum + '.0', placeholder: 'system/namespace', type: 'text', 'class': 'form-control' })
@ -92,12 +98,12 @@ function addSearchControls(theConformance, theSearchParamType, theSearchParamNam
var qualifierDropdown = $('<ul />', {'class':'dropdown-menu', role:'menu'}); var qualifierDropdown = $('<ul />', {'class':'dropdown-menu', role:'menu'});
for (var i = 0; i < qualifiers.length; i++) { for (var i = 0; i < qualifiers.length; i++) {
var nextLink = $('<a>' + qualifiers[i].name+'</a>'); var nextLink = $('<a>' + qualifiers[i].name+'</a>');
var nextName = qualifiers[i].name; var theSearchParamName = qualifiers[i].name;
var nextValue = qualifiers[i].value; var nextValue = qualifiers[i].value;
qualifierDropdown.append($('<li />').append(nextLink)); qualifierDropdown.append($('<li />').append(nextLink));
nextLink.click(function(){ nextLink.click(function(){
qualifierInput.val(nextValue); qualifierInput.val(nextValue);
matchesLabel.text(nextName); matchesLabel.text(theSearchParamName);
}); });
} }
@ -173,6 +179,19 @@ function addSearchControls(theConformance, theSearchParamType, theSearchParamNam
// ); // );
var params = new Array(); var params = new Array();
{
var param = new Object();
param.type = 'id';
param.chain = '';
param.name = theSearchParamName;
param.documentation = 'The resource identity';
param.target = new Array();
params[theSearchParamName] = param;
select.append(
$('<option />', { value: theSearchParamName }).text(param.name + ' - ' + param.documentation)
);
}
for (var chainIdx = 0; chainIdx < theSearchParamChain.length; chainIdx++) { for (var chainIdx = 0; chainIdx < theSearchParamChain.length; chainIdx++) {
var nextChain = theSearchParamChain[chainIdx]; var nextChain = theSearchParamChain[chainIdx];
var found = false; var found = false;

11
hapi-fhir-testpage-overlay/src/test/java/ca/uhn/fhir/jpa/test/OverlayTestApp.java
View File

@ -1,7 +1,5 @@
package ca.uhn.fhir.jpa.test; package ca.uhn.fhir.jpa.test;
import java.lang.annotation.Documented;
import java.util.Collection;
import java.util.List; import java.util.List;
import java.util.Set; import java.util.Set;
@ -23,6 +21,7 @@ import ca.uhn.fhir.model.api.TagList;
import ca.uhn.fhir.model.api.annotation.Description; import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.dstu.composite.IdentifierDt; import ca.uhn.fhir.model.dstu.composite.IdentifierDt;
import ca.uhn.fhir.model.dstu.resource.DiagnosticReport; import ca.uhn.fhir.model.dstu.resource.DiagnosticReport;
import ca.uhn.fhir.model.dstu.resource.Observation;
import ca.uhn.fhir.model.dstu.resource.Organization; import ca.uhn.fhir.model.dstu.resource.Organization;
import ca.uhn.fhir.model.dstu.resource.Patient; import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.resource.Questionnaire; import ca.uhn.fhir.model.dstu.resource.Questionnaire;
@ -39,6 +38,7 @@ import ca.uhn.fhir.rest.server.FifoMemoryPagingProvider;
import ca.uhn.fhir.rest.server.IResourceProvider; import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.RestfulServer; import ca.uhn.fhir.rest.server.RestfulServer;
import ca.uhn.test.jpasrv.DiagnosticReportResourceProvider; import ca.uhn.test.jpasrv.DiagnosticReportResourceProvider;
import ca.uhn.test.jpasrv.ObservationResourceProvider;
import ca.uhn.test.jpasrv.OrganizationResourceProvider; import ca.uhn.test.jpasrv.OrganizationResourceProvider;
import ca.uhn.test.jpasrv.PatientResourceProvider; import ca.uhn.test.jpasrv.PatientResourceProvider;
import ca.uhn.test.jpasrv.QuestionnaireResourceProvider; import ca.uhn.test.jpasrv.QuestionnaireResourceProvider;
@ -82,8 +82,9 @@ public class OverlayTestApp {
DiagnosticReportResourceProvider diagnosticReportRp = new DiagnosticReportResourceProvider(); DiagnosticReportResourceProvider diagnosticReportRp = new DiagnosticReportResourceProvider();
diagnosticReportRp.setDao(diagnosticReportDao); diagnosticReportRp.setDao(diagnosticReportDao);
IFhirResourceDao<Observation> observationDao = appCtx.getBean("myObservationDao", IFhirResourceDao.class);
ObservationResourceProvider observationRp = new ObservationResourceProvider();
observationRp.setDao(observationDao);
IFhirSystemDao systemDao = appCtx.getBean("mySystemDao", IFhirSystemDao.class); IFhirSystemDao systemDao = appCtx.getBean("mySystemDao", IFhirSystemDao.class);
@ -94,7 +95,7 @@ public class OverlayTestApp {
IResourceProvider rp = diagnosticReportRp; IResourceProvider rp = diagnosticReportRp;
rp = new ProviderWithRequiredAndOptional(); rp = new ProviderWithRequiredAndOptional();
restServer.setResourceProviders(rp,patientRp, questionnaireRp, organizationRp); restServer.setResourceProviders(rp,patientRp, questionnaireRp, organizationRp,observationRp);
restServer.setProviders(systemProvider); restServer.setProviders(systemProvider);
restServer.setPagingProvider(new FifoMemoryPagingProvider(10)); restServer.setPagingProvider(new FifoMemoryPagingProvider(10));
restServer.setImplementationDescription("This is a great server!!!!"); restServer.setImplementationDescription("This is a great server!!!!");

224
hapi-fhir-testpage-overlay/src/test/java/ca/uhn/fhir/jpa/test/WebUiTest_.java Normal file
View File

@ -0,0 +1,224 @@
package ca.uhn.fhir.jpa.test;
import java.util.List;
import java.util.Set;
import org.apache.commons.io.IOUtils;
import org.eclipse.jetty.server.Server;
import org.eclipse.jetty.servlet.ServletContextHandler;
import org.eclipse.jetty.servlet.ServletHolder;
import org.eclipse.jetty.webapp.WebAppContext;
import org.junit.Assert;
import org.junit.BeforeClass;
import org.springframework.context.support.ClassPathXmlApplicationContext;
import ca.uhn.fhir.jpa.dao.IFhirResourceDao;
import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
import ca.uhn.fhir.jpa.provider.JpaConformanceProvider;
import ca.uhn.fhir.jpa.provider.JpaSystemProvider;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.api.Include;
import ca.uhn.fhir.model.api.ResourceMetadataKeyEnum;
import ca.uhn.fhir.model.api.TagList;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.dstu.composite.IdentifierDt;
import ca.uhn.fhir.model.dstu.resource.DiagnosticReport;
import ca.uhn.fhir.model.dstu.resource.Organization;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.resource.Questionnaire;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.annotation.IncludeParam;
import ca.uhn.fhir.rest.annotation.OptionalParam;
import ca.uhn.fhir.rest.annotation.RequiredParam;
import ca.uhn.fhir.rest.annotation.Search;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.client.IGenericClient;
import ca.uhn.fhir.rest.param.DateRangeParam;
import ca.uhn.fhir.rest.param.TokenOrListParam;
import ca.uhn.fhir.rest.server.FifoMemoryPagingProvider;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.RestfulServer;
import ca.uhn.test.jpasrv.DiagnosticReportResourceProvider;
import ca.uhn.test.jpasrv.OrganizationResourceProvider;
import ca.uhn.test.jpasrv.PatientResourceProvider;
import ca.uhn.test.jpasrv.QuestionnaireResourceProvider;
import com.gargoylesoftware.htmlunit.BrowserVersion;
import com.gargoylesoftware.htmlunit.WebClient;
import com.gargoylesoftware.htmlunit.html.HtmlPage;
public class WebUiTest_ {
private static ClassPathXmlApplicationContext appCtx;
// @Test
public void homePage() throws Exception {
final WebClient webClient = new WebClient(BrowserVersion.FIREFOX_24);
final HtmlPage page = webClient.getPage("http://localhost:8888/");
Assert.assertEquals("HtmlUnit - Welcome to HtmlUnit", page.getTitleText());
final String pageAsXml = page.asXml();
Assert.assertTrue(pageAsXml.contains("<body class=\"composite\">"));
final String pageAsText = page.asText();
Assert.assertTrue(pageAsText.contains("Support for the HTTP and HTTPS protocols"));
webClient.closeAllWindows();
}
@SuppressWarnings("unchecked")
@BeforeClass
public static void beforeClass() throws Exception {
int myPort = 8888;
Server server = new Server(myPort);
WebAppContext root = new WebAppContext();
root.setContextPath("/");
root.setDescriptor("src/main/webapp/WEB-INF/web.xml");
root.setResourceBase("src/main/webapp");
root.setParentLoaderPriority(true);
server.setHandler(root);
server.start();
appCtx = new ClassPathXmlApplicationContext("fhir-spring-test-config.xml");
IFhirResourceDao<Patient> patientDao = appCtx.getBean("myPatientDao", IFhirResourceDao.class);
PatientResourceProvider patientRp = new PatientResourceProvider();
patientRp.setDao(patientDao);
IFhirResourceDao<Questionnaire> questionnaireDao = appCtx.getBean("myQuestionnaireDao", IFhirResourceDao.class);
QuestionnaireResourceProvider questionnaireRp = new QuestionnaireResourceProvider();
questionnaireRp.setDao(questionnaireDao);
IFhirResourceDao<Organization> organizationDao = appCtx.getBean("myOrganizationDao", IFhirResourceDao.class);
OrganizationResourceProvider organizationRp = new OrganizationResourceProvider();
organizationRp.setDao(organizationDao);
IFhirResourceDao<DiagnosticReport> diagnosticReportDao = appCtx.getBean("myDiagnosticReportDao", IFhirResourceDao.class);
DiagnosticReportResourceProvider diagnosticReportRp = new DiagnosticReportResourceProvider();
diagnosticReportRp.setDao(diagnosticReportDao);
IFhirSystemDao systemDao = appCtx.getBean("mySystemDao", IFhirSystemDao.class);
JpaSystemProvider systemProvider = new JpaSystemProvider(systemDao);
RestfulServer restServer = new RestfulServer();
IResourceProvider rp = diagnosticReportRp;
rp = new ProviderWithRequiredAndOptional();
restServer.setResourceProviders(rp,patientRp, questionnaireRp, organizationRp);
restServer.setProviders(systemProvider);
restServer.setPagingProvider(new FifoMemoryPagingProvider(10));
restServer.setImplementationDescription("This is a great server!!!!");
JpaConformanceProvider confProvider = new JpaConformanceProvider(restServer, systemDao);
restServer.setServerConformanceProvider(confProvider);
myPort = 8887;
server = new Server(myPort);
ServletContextHandler proxyHandler = new ServletContextHandler();
proxyHandler.setContextPath("/");
String base = "http://localhost:" + myPort + "/fhir/context";
// base = "http://fhir.healthintersections.com.au/open";
// base = "http://spark.furore.com/fhir";
ServletHolder servletHolder = new ServletHolder();
servletHolder.setServlet(restServer);
proxyHandler.addServlet(servletHolder, "/fhir/context/*");
server.setHandler(proxyHandler);
server.start();
if (true) {
IGenericClient client = restServer.getFhirContext().newRestfulGenericClient(base);
client.setLogRequestAndResponse(true);
Organization o1 = new Organization();
o1.getName().setValue("Some Org");
MethodOutcome create = client.create().resource(o1).execute();
IdDt orgId = create.getId();
Patient p1 = new Patient();
p1.addIdentifier("foo:bar", "12345");
p1.addName().addFamily("Smith").addGiven("John");
p1.getManagingOrganization().setReference(orgId);
TagList list = new TagList();
list.addTag("http://hl7.org/fhir/tag", "urn:happytag", "This is a happy resource");
ResourceMetadataKeyEnum.TAG_LIST.put(p1, list);
client.create().resource(p1).execute();
List<IResource> resources = restServer.getFhirContext().newJsonParser().parseBundle(IOUtils.toString(WebUiTest_.class.getResourceAsStream("/test-server-seed-bundle.json"))).toListOfResources();
client.transaction().withResources(resources).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
client.create().resource(p1).execute();
}
}
public static class ProviderWithRequiredAndOptional implements IResourceProvider {
@Description(shortDefinition="This is a query by date!")
@Search
public List<DiagnosticReport> findDiagnosticReportsByPatient (
@RequiredParam(name=DiagnosticReport.SP_SUBJECT + '.' + Patient.SP_IDENTIFIER) IdentifierDt thePatientId,
@OptionalParam(name=DiagnosticReport.SP_NAME) TokenOrListParam theNames,
@OptionalParam(name=DiagnosticReport.SP_DATE) DateRangeParam theDateRange,
@IncludeParam(allow= {"DiagnosticReport.result"}) Set<Include> theIncludes
) throws Exception {
return null;
}
@Description(shortDefinition="This is a query by issued.. blah blah foo bar blah blah")
@Search
public List<DiagnosticReport> findDiagnosticReportsByPatientIssued (
@RequiredParam(name=DiagnosticReport.SP_SUBJECT + '.' + Patient.SP_IDENTIFIER) IdentifierDt thePatientId,
@OptionalParam(name=DiagnosticReport.SP_NAME) TokenOrListParam theNames,
@OptionalParam(name=DiagnosticReport.SP_ISSUED) DateRangeParam theDateRange,
@IncludeParam(allow= {"DiagnosticReport.result"}) Set<Include> theIncludes
) throws Exception {
return null;
}
@Override
public Class<? extends IResource> getResourceType() {
return DiagnosticReport.class;
}
}
}

2
restful-server-example/.settings/org.eclipse.wst.common.component
View File

@ -6,7 +6,7 @@
<dependent-module archiveName="hapi-fhir-base-0.6-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-base/hapi-fhir-base"> <dependent-module archiveName="hapi-fhir-base-0.6-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-base/hapi-fhir-base">
<dependency-type>uses</dependency-type> <dependency-type>uses</dependency-type>
</dependent-module> </dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/prj/hapi-fhir-testpage-overlay?includes=**/**&amp;excludes=META-INF/MANIFEST.MF"> <dependent-module deploy-path="/" handle="module:/overlay/var/M2_REPO/ca/uhn/hapi/fhir/hapi-fhir-testpage-overlay/0.6-SNAPSHOT/hapi-fhir-testpage-overlay-0.6-SNAPSHOT.war?unpackFolder=target/m2e-wtp/overlays&amp;includes=**/**&amp;excludes=META-INF/MANIFEST.MF">
<dependency-type>consumes</dependency-type> <dependency-type>consumes</dependency-type>
</dependent-module> </dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/slf/?includes=**/**&amp;excludes=META-INF/MANIFEST.MF"> <dependent-module deploy-path="/" handle="module:/overlay/slf/?includes=**/**&amp;excludes=META-INF/MANIFEST.MF">