Mergeback of release into master branch (#4839)
* Force Verify tests * fix ITs (#4809) * fix RestHookTestR5IT * fix intermittent --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> * Fix migrator error on Oracle (#4814) * Fix Oracle SQL error * Add changelog * Update clinical reasoning version (#4816) * Update clinical reasoning version * Update version * Update version * Clean-up and more wireup of evaluationSettings * Add changelog --------- Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com> * Opening the care-gaps endpoint for GET. (#4823) Co-authored-by: Chalma Maadaadi <chalma@alphora.com> * added version to mdm golden resource tag (#4820) Co-authored-by: Long Ma <long@smilecdr.com> * Update the changelog for 4697 to be more descriptive (#4827) * Update the changelog for 4697 to be more descriptive * Futher tweaks of the changelog * Fixes a bug with tags. (#4813) * Test, fix * Drop constraint, add migration * Add changelog * Fix userSelected null vs false * Fix merge * Fix up checkstyle whining * One more failure * Fix test * wip * changelog clarity Co-authored-by: James Agnew <jamesagnew@gmail.com> * change index --------- Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> * fix migration issue (#4830) Co-authored-by: Ken Stevens <ken@smilecdr.com> * Create correct version enum * Remove superfluous migration * fixing test (#4835) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> --------- Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> Co-authored-by: Brenin Rhodes <brenin@alphora.com> Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com> Co-authored-by: chalmarm <44471040+chalmarm@users.noreply.github.com> Co-authored-by: Chalma Maadaadi <chalma@alphora.com> Co-authored-by: longma1 <32119004+longma1@users.noreply.github.com> Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
This commit is contained in:
Tadgh
GitHub
parent
648d14c52c
commit
e3545446eb
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@ -1,4 +1,5 @@
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---
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type: add
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issue: 4697
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title: "Add providers for the operations available in the Clinical Reasoning package."
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title: "Added DSTU3 and R4 support for the FHIR Clinical Reasoning module operations ActivityDefinition/$apply and PlanDefinition/$apply.
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$apply allows for general workflow processing and is used in clinical decision support, prior authorization, quality reporting, and disease surveillance use cases."
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@ -0,0 +1,6 @@
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---
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type: add
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issue: 4697
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title: "Added DSTU3 and R4 support for the DaVinci Documentation Templates and Rules (DTR) Questionnaire/$questionnaire-package operation.
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This operation allows a Questionnaire to be packaged as a Bundle with all the supporting resources that may be required for its use such as ValueSets and Libraries.
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This operation is used in context of prior authorization."
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@ -0,0 +1,4 @@
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---
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type: add
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issue: 4697
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title: "Added R4 support for Questionnaire/$prepopulate and PlanDefinition/$package operations. These are operations are intended to support extended DaVinci DTR and SDC uses cases."
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@ -0,0 +1,5 @@
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---
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type: add
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issue: 4697
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title: "Added DSTU3 and R4 support for the DaVinci Structured Data Capture (SDC) operations Questionnaire/$populate operation and QuestionnaireResponse/$extract.
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These operations are used in data capture and exchange use cases, and are used by downstream specifications such as DaVinci Documentation Templates and Rules (DTR) for prior authorization."
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@ -0,0 +1,5 @@
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---
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type: fix
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issue: 4814
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title: "A recent regression prevented the SQL Migrator from running on Oracle. This has been
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corrected."
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@ -0,0 +1,4 @@
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---
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type: fix
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issue: 4812
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title: "The tag being added on golden resources does not have a version, might as well add one."
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@ -9,12 +9,13 @@ import org.hl7.fhir.instance.model.api.IBaseCoding;
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import java.lang.reflect.Field;
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import java.util.HashMap;
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import java.util.Map;
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import java.util.concurrent.ConcurrentHashMap;
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/**
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* We are trying to preserve null behaviour despite IBaseCoding using primitive boolean for userSelected.
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*/
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public class CodingSpy {
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final Map<Class, Field> mySpies = new HashMap<>();
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final Map<Class, Field> mySpies = new ConcurrentHashMap<>();
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/**
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* Reach into the Coding and pull out the Boolean instead of the boolean.
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@ -126,7 +126,8 @@ public final class MdmResourceUtil {
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tag.setSystem(theSystem);
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tag.setCode(theCode);
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tag.setDisplay(theDisplay);
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tag.setUserSelected(false);
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tag.setVersion("1");
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}
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return theGoldenResource;
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}
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@ -173,6 +173,8 @@ public class JdbcUtils {
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int dataType = indexes.getInt("DATA_TYPE");
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Long length = indexes.getLong("COLUMN_SIZE");
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switch (dataType) {
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case Types.LONGVARCHAR:
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return new ColumnType(ColumnTypeEnum.TEXT, length);
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case Types.BIT:
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case Types.BOOLEAN:
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return new ColumnType(ColumnTypeEnum.BOOLEAN, length);
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@ -52,7 +52,7 @@ public class BulkExportJobParametersValidator implements IJobParametersValidator
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@Autowired
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private InMemoryResourceMatcher myInMemoryResourceMatcher;
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@Autowired
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@Autowired(required = false)
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private IBinaryStorageSvc myBinaryStorageSvc;
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@Nullable
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@ -79,7 +79,7 @@ public class BulkExportJobParametersValidator implements IJobParametersValidator
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// validate the exportId
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if (!StringUtils.isBlank(theParameters.getExportIdentifier())) {
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if (!myBinaryStorageSvc.isValidBlobId(theParameters.getExportIdentifier())) {
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if (myBinaryStorageSvc != null && !myBinaryStorageSvc.isValidBlobId(theParameters.getExportIdentifier())) {
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errorMsgs.add("Export ID does not conform to the current blob storage implementation's limitations.");
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}
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}
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@ -93,7 +93,7 @@ public class CareGapsOperationProvider {
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* @return Parameters of bundles of Care Gap Measure Reports
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*/
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@Description(shortDefinition = "$care-gaps operation", value = "Implements the <a href=\"http://build.fhir.org/ig/HL7/davinci-deqm/OperationDefinition-care-gaps.html\">$care-gaps</a> operation found in the <a href=\"http://build.fhir.org/ig/HL7/davinci-deqm/index.html\">Da Vinci DEQM FHIR Implementation Guide</a> which is an extension of the <a href=\"http://build.fhir.org/operation-measure-care-gaps.html\">$care-gaps</a> operation found in the <a href=\"http://hl7.org/fhir/R4/clinicalreasoning-module.html\">FHIR Clinical Reasoning Module</a>.")
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@Operation(name = "$care-gaps", idempotent = false, type = Measure.class)
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@Operation(name = "$care-gaps", idempotent = true, type = Measure.class)
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public Parameters careGapsReport(
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RequestDetails theRequestDetails,
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@OperationParam(name = "periodStart", typeName = "date") IPrimitiveType<Date> thePeriodStart,
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@ -537,4 +537,9 @@ public class CareGapsService implements IDaoRegistryUser {
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public DaoRegistry getDaoRegistry() {
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return myDaoRegistry;
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}
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public CrProperties getCrProperties() {
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return myCrProperties;
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}
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}
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