collect-data and data-requirements operations and tests (#5854)
* collect-data and data-requirements operations and tests * remove unused imports * additional test coverage * move assertions out of method to pass static code analysis * camelCase test names * remove underscore on test methods * requested edits to changelog * version bump to 7.1.10-SNAPSHOT * condense unit tests to prevent pipeline timeout * method camel case naming
This commit is contained in:
Justin McKelvy
GitHub
parent
a90ccde71c
commit
e400db5fb8
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<modelVersion>4.0.0</modelVersion>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-bom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<packaging>pom</packaging>
|
||||
<name>HAPI FHIR BOM</name>
|
||||
|
|
@ -12,7 +12,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-cli</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -0,0 +1,6 @@
|
|||
---
|
||||
type: add
|
||||
issue: 5850
|
||||
title: "Add additional Clinical Reasoning operations $collect-data and $data-requirements to HAPI-FHIR to expand capability
|
||||
for clinical reasoning module users. These operations will assist users in identifying data requirements for evaluating a measure, and what
|
||||
data was used for a measure evaluation"
|
||||
|
|
@ -11,7 +11,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
||||
|
|
|
|||
|
|
@ -3,7 +3,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
||||
|
|
|
|||
|
|
@ -3,7 +3,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
||||
|
|
|
|||
|
|
@ -123,7 +123,8 @@ public class ProviderConstants {
|
|||
public static final String CR_OPERATION_EXTRACT = "$extract";
|
||||
public static final String CR_OPERATION_PACKAGE = "$package";
|
||||
public static final String CR_OPERATION_QUESTIONNAIRE = "$questionnaire";
|
||||
|
||||
public static final String CR_OPERATION_COLLECTDATA = "$collect-data";
|
||||
public static final String CR_OPERATION_DATAREQUIREMENTS = "$data-requirements";
|
||||
/**
|
||||
* Operation name for the $meta operation
|
||||
*/
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@
|
|||
<parent>
|
||||
<artifactId>hapi-fhir-serviceloaders</artifactId>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@
|
|||
<parent>
|
||||
<artifactId>hapi-fhir-serviceloaders</artifactId>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
@ -21,7 +21,7 @@
|
|||
<dependency>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-caching-api</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
</dependency>
|
||||
<dependency>
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@
|
|||
<parent>
|
||||
<artifactId>hapi-fhir-serviceloaders</artifactId>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@
|
|||
<parent>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
</parent>
|
||||
|
||||
<artifactId>hapi-fhir-spring-boot-sample-client-apache</artifactId>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
</parent>
|
||||
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
</parent>
|
||||
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir-spring-boot</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
</parent>
|
||||
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -26,13 +26,17 @@ import ca.uhn.fhir.cr.config.ProviderLoader;
|
|||
import ca.uhn.fhir.cr.config.ProviderSelector;
|
||||
import ca.uhn.fhir.cr.config.RepositoryConfig;
|
||||
import ca.uhn.fhir.cr.r4.ICareGapsServiceFactory;
|
||||
import ca.uhn.fhir.cr.r4.ICollectDataServiceFactory;
|
||||
import ca.uhn.fhir.cr.r4.ICqlExecutionServiceFactory;
|
||||
import ca.uhn.fhir.cr.r4.IDataRequirementsServiceFactory;
|
||||
import ca.uhn.fhir.cr.r4.ILibraryEvaluationServiceFactory;
|
||||
import ca.uhn.fhir.cr.r4.IMeasureServiceFactory;
|
||||
import ca.uhn.fhir.cr.r4.ISubmitDataProcessorFactory;
|
||||
import ca.uhn.fhir.cr.r4.cpg.CqlExecutionOperationProvider;
|
||||
import ca.uhn.fhir.cr.r4.cpg.LibraryEvaluationOperationProvider;
|
||||
import ca.uhn.fhir.cr.r4.measure.CareGapsOperationProvider;
|
||||
import ca.uhn.fhir.cr.r4.measure.CollectDataOperationProvider;
|
||||
import ca.uhn.fhir.cr.r4.measure.DataRequirementsOperationProvider;
|
||||
import ca.uhn.fhir.cr.r4.measure.MeasureOperationsProvider;
|
||||
import ca.uhn.fhir.cr.r4.measure.SubmitDataProvider;
|
||||
import ca.uhn.fhir.rest.server.RestfulServer;
|
||||
|
|
@ -42,6 +46,8 @@ import org.opencds.cqf.fhir.cr.cpg.r4.R4LibraryEvaluationService;
|
|||
import org.opencds.cqf.fhir.cr.measure.CareGapsProperties;
|
||||
import org.opencds.cqf.fhir.cr.measure.MeasureEvaluationOptions;
|
||||
import org.opencds.cqf.fhir.cr.measure.r4.R4CareGapsService;
|
||||
import org.opencds.cqf.fhir.cr.measure.r4.R4CollectDataService;
|
||||
import org.opencds.cqf.fhir.cr.measure.r4.R4DataRequirementsService;
|
||||
import org.opencds.cqf.fhir.cr.measure.r4.R4MeasureService;
|
||||
import org.opencds.cqf.fhir.cr.measure.r4.R4SubmitDataService;
|
||||
import org.springframework.beans.factory.annotation.Qualifier;
|
||||
|
|
@ -86,6 +92,28 @@ public class CrR4Config {
|
|||
return new CqlExecutionOperationProvider();
|
||||
}
|
||||
|
||||
@Bean
|
||||
CollectDataOperationProvider r4CollectDataOperationProvider() {
|
||||
return new CollectDataOperationProvider();
|
||||
}
|
||||
|
||||
@Bean
|
||||
ICollectDataServiceFactory collectDataServiceFactory(
|
||||
IRepositoryFactory theRepositoryFactory, MeasureEvaluationOptions theMeasureEvaluationOptions) {
|
||||
return rd -> new R4CollectDataService(theRepositoryFactory.create(rd), theMeasureEvaluationOptions);
|
||||
}
|
||||
|
||||
@Bean
|
||||
DataRequirementsOperationProvider r4DataRequirementsOperationProvider() {
|
||||
return new DataRequirementsOperationProvider();
|
||||
}
|
||||
|
||||
@Bean
|
||||
IDataRequirementsServiceFactory dataRequirementsServiceFactory(
|
||||
IRepositoryFactory theRepositoryFactory, MeasureEvaluationOptions theMeasureEvaluationOptions) {
|
||||
return rd -> new R4DataRequirementsService(theRepositoryFactory.create(rd), theMeasureEvaluationOptions);
|
||||
}
|
||||
|
||||
@Bean
|
||||
LibraryEvaluationOperationProvider r4LibraryEvaluationOperationProvider() {
|
||||
return new LibraryEvaluationOperationProvider();
|
||||
|
|
@ -132,7 +160,9 @@ public class CrR4Config {
|
|||
SubmitDataProvider.class,
|
||||
CareGapsOperationProvider.class,
|
||||
CqlExecutionOperationProvider.class,
|
||||
LibraryEvaluationOperationProvider.class)));
|
||||
LibraryEvaluationOperationProvider.class,
|
||||
CollectDataOperationProvider.class,
|
||||
DataRequirementsOperationProvider.class)));
|
||||
|
||||
return new ProviderLoader(theRestfulServer, theApplicationContext, selector);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,9 @@
|
|||
package ca.uhn.fhir.cr.r4;
|
||||
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import org.opencds.cqf.fhir.cr.measure.r4.R4CollectDataService;
|
||||
|
||||
@FunctionalInterface
|
||||
public interface ICollectDataServiceFactory {
|
||||
R4CollectDataService create(RequestDetails theRequestDetails);
|
||||
}
|
||||
|
|
@ -0,0 +1,9 @@
|
|||
package ca.uhn.fhir.cr.r4;
|
||||
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import org.opencds.cqf.fhir.cr.measure.r4.R4DataRequirementsService;
|
||||
|
||||
@FunctionalInterface
|
||||
public interface IDataRequirementsServiceFactory {
|
||||
R4DataRequirementsService create(RequestDetails theRequestDetails);
|
||||
}
|
||||
|
|
@ -113,7 +113,7 @@ public class CqlExecutionOperationProvider {
|
|||
* is a CQL system-defined or FHIR-defined type, the result is returned
|
||||
* as a {@link Parameters} Parameters resource
|
||||
*/
|
||||
@Operation(name = ProviderConstants.CR_OPERATION_CQL)
|
||||
@Operation(name = ProviderConstants.CR_OPERATION_CQL, idempotent = true)
|
||||
@Description(
|
||||
shortDefinition = "$cql",
|
||||
value =
|
||||
|
|
@ -145,6 +145,6 @@ public class CqlExecutionOperationProvider {
|
|||
theDataEndpoint,
|
||||
theContentEndpoint,
|
||||
theTerminologyEndpoint,
|
||||
null);
|
||||
theContent);
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,56 @@
|
|||
package ca.uhn.fhir.cr.r4.measure;
|
||||
|
||||
import ca.uhn.fhir.cr.r4.ICollectDataServiceFactory;
|
||||
import ca.uhn.fhir.model.api.annotation.Description;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import ca.uhn.fhir.rest.server.provider.ProviderConstants;
|
||||
import org.hl7.fhir.r4.model.IdType;
|
||||
import org.hl7.fhir.r4.model.Measure;
|
||||
import org.hl7.fhir.r4.model.Parameters;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
|
||||
public class CollectDataOperationProvider {
|
||||
@Autowired
|
||||
ICollectDataServiceFactory myR4CollectDataServiceFactory;
|
||||
/**
|
||||
* Implements the <a href=
|
||||
* "http://hl7.org/fhir/R4/measure-operation-collect-data.html">$collect-data</a>
|
||||
* operation found in the
|
||||
* <a href="http://hl7.org/fhir/R4/clinicalreasoning-module.html">FHIR Clinical
|
||||
* Reasoning Module</a>.
|
||||
*
|
||||
* <p>
|
||||
* Returns a set of parameters with the generated MeasureReport and the
|
||||
* resources that were used during the Measure evaluation
|
||||
*
|
||||
* @param theRequestDetails generally auto-populated by the HAPI server
|
||||
* framework.
|
||||
* @param theId the Id of the Measure to sub data for
|
||||
* @param thePeriodStart The start of the reporting period
|
||||
* @param thePeriodEnd The end of the reporting period
|
||||
* @param theSubject the subject to use for the evaluation
|
||||
* @param thePractitioner the practitioner to use for the evaluation
|
||||
*
|
||||
* @return Parameters the parameters containing the MeasureReport and the
|
||||
* evaluated Resources
|
||||
*/
|
||||
@Description(
|
||||
shortDefinition = "$collect-data",
|
||||
value =
|
||||
"Implements the <a href=\"http://hl7.org/fhir/R4/measure-operation-collect-data.html\">$collect-data</a> operation found in the <a href=\"http://hl7.org/fhir/R4/clinicalreasoning-module.html\">FHIR Clinical Reasoning Module</a>.")
|
||||
@Operation(name = ProviderConstants.CR_OPERATION_COLLECTDATA, idempotent = true, type = Measure.class)
|
||||
public Parameters collectData(
|
||||
@IdParam IdType theId,
|
||||
@OperationParam(name = "periodStart") String thePeriodStart,
|
||||
@OperationParam(name = "periodEnd") String thePeriodEnd,
|
||||
@OperationParam(name = "subject") String theSubject,
|
||||
@OperationParam(name = "practitioner") String thePractitioner,
|
||||
RequestDetails theRequestDetails) {
|
||||
return myR4CollectDataServiceFactory
|
||||
.create(theRequestDetails)
|
||||
.collectData(theId, thePeriodStart, thePeriodEnd, theSubject, thePractitioner);
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,42 @@
|
|||
package ca.uhn.fhir.cr.r4.measure;
|
||||
|
||||
import ca.uhn.fhir.cr.r4.IDataRequirementsServiceFactory;
|
||||
import ca.uhn.fhir.rest.annotation.IdParam;
|
||||
import ca.uhn.fhir.rest.annotation.Operation;
|
||||
import ca.uhn.fhir.rest.annotation.OperationParam;
|
||||
import ca.uhn.fhir.rest.api.server.RequestDetails;
|
||||
import ca.uhn.fhir.rest.server.provider.ProviderConstants;
|
||||
import org.hl7.fhir.r4.model.IdType;
|
||||
import org.hl7.fhir.r4.model.Library;
|
||||
import org.hl7.fhir.r4.model.Measure;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
|
||||
public class DataRequirementsOperationProvider {
|
||||
@Autowired
|
||||
IDataRequirementsServiceFactory myR4DataRequirementsServiceFactory;
|
||||
/**
|
||||
* Implements the <a href=
|
||||
* "https://www.hl7.org/fhir/R4/measure-operation-data-requirements.html">$evaluate-measure</a>
|
||||
* operation found in the
|
||||
* <a href="http://www.hl7.org/fhir/clinicalreasoning-module.html">FHIR Clinical
|
||||
* Reasoning Module</a>. This implementation aims to be compatible with the CQF
|
||||
* IG.
|
||||
*
|
||||
* @param theId the id of the Measure to evaluate
|
||||
* @param thePeriodStart The start of the reporting period
|
||||
* @param thePeriodEnd The end of the reporting period
|
||||
* @param theRequestDetails The details (such as tenant) of this request. Usually
|
||||
* autopopulated HAPI.
|
||||
* @return the calculated Library dataRequirements
|
||||
*/
|
||||
@Operation(name = ProviderConstants.CR_OPERATION_DATAREQUIREMENTS, idempotent = true, type = Measure.class)
|
||||
public Library dataRequirements(
|
||||
@IdParam IdType theId,
|
||||
@OperationParam(name = "periodStart") String thePeriodStart,
|
||||
@OperationParam(name = "periodEnd") String thePeriodEnd,
|
||||
RequestDetails theRequestDetails) {
|
||||
return myR4DataRequirementsServiceFactory
|
||||
.create(theRequestDetails)
|
||||
.dataRequirements(theId, thePeriodStart, thePeriodEnd);
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,73 @@
|
|||
package ca.uhn.fhir.cr.r4;
|
||||
|
||||
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
|
||||
import ca.uhn.fhir.rest.server.provider.ProviderConstants;
|
||||
import org.hl7.fhir.r4.model.DateType;
|
||||
import org.hl7.fhir.r4.model.Parameters;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.Test;
|
||||
import org.junit.jupiter.api.extension.ExtendWith;
|
||||
import org.springframework.test.context.junit.jupiter.SpringExtension;
|
||||
|
||||
import static org.junit.jupiter.api.Assertions.assertThrows;
|
||||
|
||||
@ExtendWith(SpringExtension.class)
|
||||
public class CollectDataTest extends BaseCrR4TestServer{
|
||||
public Parameters runCollectData(String thePeriodStart, String thePeriodEnd, String theMeasureId, String theSubject, String thePractitioner){
|
||||
|
||||
var parametersEval = new Parameters();
|
||||
parametersEval.addParameter("periodStart", new DateType(thePeriodStart));
|
||||
parametersEval.addParameter("periodEnd", new DateType(thePeriodEnd));
|
||||
parametersEval.addParameter("practitioner", thePractitioner);
|
||||
parametersEval.addParameter("subject", theSubject);
|
||||
|
||||
|
||||
var report = ourClient.operation().onInstance("Measure/" + theMeasureId)
|
||||
.named(ProviderConstants.CR_OPERATION_COLLECTDATA)
|
||||
.withParameters(parametersEval)
|
||||
.returnResourceType(Parameters.class)
|
||||
.execute();
|
||||
|
||||
return report;
|
||||
}
|
||||
@Test
|
||||
void testMeasureDataRequirements() {
|
||||
loadBundle("ColorectalCancerScreeningsFHIR-bundle.json");
|
||||
var reportAllSubjects = runCollectData("2019-01-01", "2019-12-31", "ColorectalCancerScreeningsFHIR", null, null);
|
||||
Assertions.assertFalse(reportAllSubjects.getParameter().isEmpty());
|
||||
// use same loaded bundle for all tests
|
||||
testCollectDataSubject();
|
||||
testCollectDataGroup();
|
||||
testCollectDataPractitioner();
|
||||
testCollectDataInvalidInterval();
|
||||
testCollectDataInvalidMeasure();
|
||||
}
|
||||
|
||||
void testCollectDataSubject() {
|
||||
var report = runCollectData("2019-01-01", "2019-12-31", "ColorectalCancerScreeningsFHIR", "Patient/numer-EXM130", null);
|
||||
Assertions.assertFalse(report.getParameter().isEmpty());
|
||||
}
|
||||
|
||||
|
||||
void testCollectDataGroup() {
|
||||
var report = runCollectData("2019-01-01", "2019-12-31", "ColorectalCancerScreeningsFHIR", "Group/group-EXM130", null);
|
||||
Assertions.assertFalse(report.getParameter().isEmpty());
|
||||
}
|
||||
|
||||
|
||||
void testCollectDataPractitioner() {
|
||||
var report = runCollectData("2019-01-01", "2019-12-31", "ColorectalCancerScreeningsFHIR", null, "Practitioner/practitioner-EXM130");
|
||||
Assertions.assertFalse(report.getParameter().isEmpty());
|
||||
}
|
||||
|
||||
|
||||
void testCollectDataInvalidInterval() {
|
||||
assertThrows(InternalErrorException.class, ()->runCollectData("2020-01-01", "2019-12-31", "ColorectalCancerScreeningsFHIR", null, null));
|
||||
}
|
||||
|
||||
|
||||
void testCollectDataInvalidMeasure() {
|
||||
assertThrows(ResourceNotFoundException.class, ()->runCollectData("2019-01-01", "2019-12-31", "ColorectalCancerScreeningsFHI", null, null));
|
||||
}
|
||||
}
|
||||
|
|
@ -30,23 +30,37 @@ import static org.junit.jupiter.api.Assertions.assertTrue;
|
|||
public class CpgOperationProviderTest extends BaseCrR4TestServer{
|
||||
@BeforeEach
|
||||
void setup() {
|
||||
var reqDeets = setupRequestDetails();
|
||||
loadResource(Library.class, "SimpleR4Library.json", reqDeets);
|
||||
loadResource(Patient.class, "SimplePatient.json", reqDeets);
|
||||
loadResource(Observation.class, "SimpleObservation.json", reqDeets);
|
||||
loadResource(Condition.class, "SimpleCondition.json", reqDeets);
|
||||
var requestDetails = setupRequestDetails();
|
||||
loadResource(Library.class, "SimpleR4Library.json", requestDetails);
|
||||
loadResource(Patient.class, "SimplePatient.json", requestDetails);
|
||||
loadResource(Observation.class, "SimpleObservation.json", requestDetails);
|
||||
loadResource(Condition.class, "SimpleCondition.json", requestDetails);
|
||||
}
|
||||
@Test
|
||||
void cpgProviderTest(){
|
||||
// reuse loaded resources for all tests
|
||||
assertTrue(cqlExecutionProviderTestSimpleDate());
|
||||
cqlExecutionProviderTestSimpleArithmetic();
|
||||
evaluateLibraryProviderTestLibraryWithSubject();
|
||||
evaluateLibraryProviderTestSimpleExpression();
|
||||
cqlExecutionProviderTestReferencedLibrary();
|
||||
cqlExecutionProviderTestDataBundle();
|
||||
cqlExecutionProviderTestDataBundleWithSubject();
|
||||
cqlExecutionProviderTestSimpleParameters();
|
||||
cqlExecutionProviderTestExpression();
|
||||
cqlExecutionProviderTestErrorExpression();
|
||||
}
|
||||
|
||||
@Test
|
||||
void cqlExecutionProvider_testSimpleDate() {
|
||||
|
||||
private Boolean cqlExecutionProviderTestSimpleDate() {
|
||||
// execute cql expression on date interval
|
||||
Parameters params = parameters(stringPart("expression", "Interval[Today() - 2 years, Today())"));
|
||||
Parameters results = runCqlExecution(params);
|
||||
assertTrue(results.getParameter("return").getValue() instanceof Period);
|
||||
return results.getParameter("return").getValue() instanceof Period;
|
||||
}
|
||||
|
||||
@Test
|
||||
void cqlExecutionProvider_testSimpleArithmetic() {
|
||||
|
||||
void cqlExecutionProviderTestSimpleArithmetic() {
|
||||
// execute simple cql expression
|
||||
Parameters params = parameters(stringPart("expression", "5 * 5"));
|
||||
Parameters results = runCqlExecution(params);
|
||||
|
|
@ -54,8 +68,7 @@ public class CpgOperationProviderTest extends BaseCrR4TestServer{
|
|||
assertEquals("25", ((IntegerType) results.getParameter("return").getValue()).asStringValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
void evaluateLibraryProvider_testLibraryWithSubject() {
|
||||
void evaluateLibraryProviderTestLibraryWithSubject() {
|
||||
// evaluate library resource for a subject
|
||||
var params = new Parameters();
|
||||
params.addParameter("subject", new StringType("Patient/SimplePatient"));
|
||||
|
|
@ -71,8 +84,8 @@ public class CpgOperationProviderTest extends BaseCrR4TestServer{
|
|||
assertTrue(((BooleanType) report.getParameter("Denominator").getValue()).booleanValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
void evaluateLibraryProvider_testSimpleExpression() {
|
||||
|
||||
void evaluateLibraryProviderTestSimpleExpression() {
|
||||
// evaluate expression for subject from specified library resource
|
||||
var params = new Parameters();
|
||||
params.addParameter("subject", new StringType("Patient/SimplePatient"));
|
||||
|
|
@ -84,8 +97,7 @@ public class CpgOperationProviderTest extends BaseCrR4TestServer{
|
|||
assertTrue(((BooleanType) report.getParameter("Numerator").getValue()).booleanValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
void cqlExecutionProvider_testReferencedLibrary() {
|
||||
void cqlExecutionProviderTestReferencedLibrary() {
|
||||
// execute cql expression from referenced library on subject
|
||||
Parameters libraryParameter = parameters(
|
||||
canonicalPart("url", ourClient.getServerBase() + "/Library/SimpleR4Library|0.0.1"),
|
||||
|
|
@ -100,8 +112,7 @@ public class CpgOperationProviderTest extends BaseCrR4TestServer{
|
|||
assertTrue(((BooleanType) results.getParameter("return").getValue()).booleanValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
void cqlExecutionProvider_testDataBundle() {
|
||||
void cqlExecutionProviderTestDataBundle() {
|
||||
// execute cql expression from library over data from bundle with no subject
|
||||
Parameters libraryParameter = parameters(
|
||||
canonicalPart("url", ourClient.getServerBase() + "/Library/SimpleR4Library"),
|
||||
|
|
@ -118,8 +129,8 @@ public class CpgOperationProviderTest extends BaseCrR4TestServer{
|
|||
assertTrue(results.getParameter().get(0).getResource() instanceof Observation);
|
||||
}
|
||||
|
||||
@Test
|
||||
void cqlExecutionProvider_testDataBundleWithSubject() {
|
||||
|
||||
void cqlExecutionProviderTestDataBundleWithSubject() {
|
||||
// execute cql expression from library over data from bundle with subject
|
||||
Parameters libraryParameter = parameters(
|
||||
canonicalPart("url", ourClient.getServerBase() + "/Library/SimpleR4Library"),
|
||||
|
|
@ -135,8 +146,8 @@ public class CpgOperationProviderTest extends BaseCrR4TestServer{
|
|||
assertTrue(results.getParameter().get(0).getResource() instanceof Observation);
|
||||
}
|
||||
|
||||
@Test
|
||||
void cqlExecutionProvider_testSimpleParameters() {
|
||||
|
||||
void cqlExecutionProviderTestSimpleParameters() {
|
||||
// execute inline cql date expression with input valuemv
|
||||
Parameters evaluationParams = parameters(
|
||||
datePart("%inputDate", "2019-11-01"));
|
||||
|
|
@ -148,8 +159,7 @@ public class CpgOperationProviderTest extends BaseCrR4TestServer{
|
|||
assertTrue(((BooleanType) results.getParameter("return").getValue()).booleanValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
void cqlExecutionProvider_testExpression() {
|
||||
void cqlExecutionProviderTestExpression() {
|
||||
// execute cql expression from referenced library
|
||||
Parameters libraryParameter = parameters(
|
||||
canonicalPart("url", ourClient.getServerBase() + "/Library/SimpleR4Library"),
|
||||
|
|
@ -168,8 +178,7 @@ public class CpgOperationProviderTest extends BaseCrR4TestServer{
|
|||
assertTrue(((BooleanType) results.getParameter("return").getValue()).booleanValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
void cqlExecutionProvider_testErrorExpression() {
|
||||
void cqlExecutionProviderTestErrorExpression() {
|
||||
// execute invalid cql expression
|
||||
Parameters params = parameters(stringPart("expression", "Interval[1,5]"));
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,49 @@
|
|||
package ca.uhn.fhir.cr.r4;
|
||||
|
||||
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
|
||||
import ca.uhn.fhir.rest.server.provider.ProviderConstants;
|
||||
import org.hl7.fhir.r4.model.DateType;
|
||||
import org.hl7.fhir.r4.model.Library;
|
||||
import org.hl7.fhir.r4.model.Parameters;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.Test;
|
||||
import org.junit.jupiter.api.extension.ExtendWith;
|
||||
import org.springframework.test.context.junit.jupiter.SpringExtension;
|
||||
|
||||
import static org.junit.jupiter.api.Assertions.assertThrows;
|
||||
|
||||
@ExtendWith(SpringExtension.class)
|
||||
public class DataRequirementsTest extends BaseCrR4TestServer{
|
||||
public Library runDataRequirements(String periodStart, String periodEnd, String measureId){
|
||||
|
||||
var parametersEval = new Parameters();
|
||||
parametersEval.addParameter("periodStart", new DateType(periodStart));
|
||||
parametersEval.addParameter("periodEnd", new DateType(periodEnd));
|
||||
|
||||
|
||||
var report = ourClient.operation().onInstance("Measure/" + measureId)
|
||||
.named(ProviderConstants.CR_OPERATION_DATAREQUIREMENTS)
|
||||
.withParameters(parametersEval)
|
||||
.returnResourceType(Library.class)
|
||||
.execute();
|
||||
|
||||
return report;
|
||||
|
||||
}
|
||||
@Test
|
||||
void testMeasureDataRequirements() {
|
||||
loadBundle("ColorectalCancerScreeningsFHIR-bundle.json");
|
||||
Assertions.assertFalse(runDataRequirements("2019-01-01", "2019-12-31", "ColorectalCancerScreeningsFHIR").getDataRequirement().isEmpty());
|
||||
testMeasureDataRequirementsInvalidInterval();
|
||||
testMeasureDataRequirementsInvalidMeasure();
|
||||
}
|
||||
void testMeasureDataRequirementsInvalidInterval() {
|
||||
assertThrows(InternalErrorException.class, ()->runDataRequirements("2020-01-01", "2019-12-31", "ColorectalCancerScreeningsFHIR"));
|
||||
}
|
||||
|
||||
void testMeasureDataRequirementsInvalidMeasure() {
|
||||
assertThrows(ResourceNotFoundException.class, ()->runDataRequirements("2019-01-01", "2019-12-31", "ColorectalCancerScreeningsFHI"));
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -5,7 +5,6 @@ import static org.junit.jupiter.api.Assertions.assertThrows;
|
|||
import static org.junit.jupiter.api.Assertions.assertTrue;
|
||||
|
||||
import java.util.*;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import ca.uhn.fhir.rest.param.*;
|
||||
import ca.uhn.fhir.rest.server.RestfulServer;
|
||||
|
|
@ -15,6 +14,7 @@ import org.hl7.fhir.r4.model.HumanName;
|
|||
import org.hl7.fhir.r4.model.IdType;
|
||||
import org.hl7.fhir.r4.model.Immunization;
|
||||
import org.hl7.fhir.r4.model.Patient;
|
||||
import org.junit.jupiter.api.BeforeEach;
|
||||
import org.junit.jupiter.api.Test;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import ca.uhn.fhir.cr.repo.HapiFhirRepository;
|
||||
|
|
@ -28,13 +28,28 @@ public class HapiFhirRepositoryR4Test extends BaseCrR4TestServer {
|
|||
private static final String MY_TEST_DATA =
|
||||
"ca/uhn/fhir/cr/r4/immunization/Patients_Encounters_Immunizations_Practitioners.json";
|
||||
|
||||
@BeforeEach
|
||||
void setup() {
|
||||
loadBundle("ColorectalCancerScreeningsFHIR-bundle.json");
|
||||
loadBundle(MY_TEST_DATA);
|
||||
}
|
||||
@Test
|
||||
void crudTest() {
|
||||
var requestDetails = setupRequestDetails();
|
||||
//register repo
|
||||
//regster providers
|
||||
var repository = new HapiFhirRepository(myDaoRegistry, requestDetails, myRestfulServer);
|
||||
var result = repository
|
||||
void repositoryTests(){
|
||||
var repository = new HapiFhirRepository(myDaoRegistry, setupRequestDetails(), myRestfulServer);
|
||||
//run repository tests
|
||||
transactionReadsImmunizationResources(repository);
|
||||
repositorySearchForEncounterWithMatchingCode(repository);
|
||||
canSearchMoreThan50Patients(repository);
|
||||
canSearchWithPagination(repository);
|
||||
transactionReadsPatientResources(repository);
|
||||
transactionReadsEncounterResources(repository);
|
||||
assertTrue(crudTest(repository));
|
||||
}
|
||||
|
||||
|
||||
Boolean crudTest(HapiFhirRepository theRepository) {
|
||||
|
||||
var result = theRepository
|
||||
.create(new Patient().addName(new HumanName().setFamily("Test").addGiven("Name1")));
|
||||
assertEquals(true, result.getCreated());
|
||||
var patient = (Patient) result.getResource();
|
||||
|
|
@ -42,64 +57,24 @@ public class HapiFhirRepositoryR4Test extends BaseCrR4TestServer {
|
|||
assertEquals("Test", patient.getName().get(0).getFamily());
|
||||
assertEquals(1, patient.getName().get(0).getGiven().size());
|
||||
patient.getName().get(0).addGiven("Name2");
|
||||
repository.update(patient);
|
||||
var updatedPatient = repository.read(Patient.class, patient.getIdElement());
|
||||
theRepository.update(patient);
|
||||
var updatedPatient = theRepository.read(Patient.class, patient.getIdElement());
|
||||
assertEquals(2, updatedPatient.getName().get(0).getGiven().size());
|
||||
repository.delete(Patient.class, patient.getIdElement());
|
||||
theRepository.delete(Patient.class, patient.getIdElement());
|
||||
var ex = assertThrows(Exception.class,
|
||||
() -> repository.read(Patient.class, new IdType(patient.getIdElement().getIdPart())));
|
||||
assertTrue(ex.getMessage().contains("Resource was deleted"));
|
||||
() -> theRepository.read(Patient.class, new IdType(patient.getIdElement().getIdPart())));
|
||||
return ex.getMessage().contains("Resource was deleted");
|
||||
}
|
||||
|
||||
@Test
|
||||
void canSearchMoreThan50Patients() {
|
||||
loadBundle(MY_TEST_DATA);
|
||||
var expectedPatientCount = 63;
|
||||
void canSearchMoreThan50Patients(HapiFhirRepository theRepository) {
|
||||
var expectedPatientCount = 65;
|
||||
|
||||
ourPagingProvider.setMaximumPageSize(100);
|
||||
var repository = new HapiFhirRepository(myDaoRegistry, setupRequestDetails(), myRestfulServer);
|
||||
// get all patient resources posted
|
||||
var result = repository.search(Bundle.class, Patient.class, withCountParam(100));
|
||||
var result = theRepository.search(Bundle.class, Patient.class, withCountParam(100));
|
||||
assertEquals(expectedPatientCount, result.getTotal());
|
||||
// count all resources in result
|
||||
int counter = 0;
|
||||
for (var e : result.getEntry()) {
|
||||
counter++;
|
||||
}
|
||||
// verify all patient resources captured
|
||||
assertEquals(expectedPatientCount, counter,
|
||||
"Patient search results don't match available resources");
|
||||
}
|
||||
|
||||
@Test
|
||||
void canSearchWithPagination() {
|
||||
loadBundle(MY_TEST_DATA);
|
||||
|
||||
var requestDetails = setupRequestDetails();
|
||||
var repository = new HapiFhirRepository(myDaoRegistry, requestDetails, myRestfulServer);
|
||||
var result = repository.search(Bundle.class, Patient.class, withCountParam(20));
|
||||
assertEquals(20, result.getEntry().size());
|
||||
var next = result.getLink().get(1);
|
||||
assertEquals("next", next.getRelation());
|
||||
var nextUrl = next.getUrl();
|
||||
var nextResult = repository.link(Bundle.class, nextUrl);
|
||||
assertEquals(20, nextResult.getEntry().size());
|
||||
assertEquals(false,
|
||||
result.getEntry().stream().map(e -> e.getResource().getIdPart()).anyMatch(
|
||||
i -> nextResult.getEntry().stream().map(e -> e.getResource().getIdPart())
|
||||
.collect(Collectors.toList()).contains(i)));
|
||||
}
|
||||
|
||||
@Test
|
||||
void transactionReadsPatientResources() {
|
||||
var expectedPatientCount = 63;
|
||||
var theBundle = readResource(Bundle.class, MY_TEST_DATA);
|
||||
ourPagingProvider.setMaximumPageSize(100);
|
||||
var repository = new HapiFhirRepository(myDaoRegistry, setupRequestDetails(), myRestfulServer);
|
||||
repository.transaction(theBundle);
|
||||
var result = repository.search(Bundle.class, Patient.class, withCountParam(100));
|
||||
// count all resources in result
|
||||
int counter = 0;
|
||||
for (Object i : result.getEntry()) {
|
||||
counter++;
|
||||
}
|
||||
|
|
@ -108,14 +83,41 @@ public class HapiFhirRepositoryR4Test extends BaseCrR4TestServer {
|
|||
"Patient search results don't match available resources");
|
||||
}
|
||||
|
||||
@Test
|
||||
void transactionReadsEncounterResources() {
|
||||
var expectedEncounterCount = 652;
|
||||
var theBundle = readResource(Bundle.class, MY_TEST_DATA);
|
||||
|
||||
void canSearchWithPagination(HapiFhirRepository theRepository) {
|
||||
|
||||
var result = theRepository.search(Bundle.class, Patient.class, withCountParam(20));
|
||||
assertEquals(20, result.getEntry().size());
|
||||
var next = result.getLink().get(1);
|
||||
assertEquals("next", next.getRelation());
|
||||
var nextUrl = next.getUrl();
|
||||
var nextResult = theRepository.link(Bundle.class, nextUrl);
|
||||
assertEquals(20, nextResult.getEntry().size());
|
||||
assertEquals(false,
|
||||
result.getEntry().stream().map(e -> e.getResource().getIdPart()).anyMatch(
|
||||
i -> nextResult.getEntry().stream().map(e -> e.getResource().getIdPart())
|
||||
.toList().contains(i)));
|
||||
}
|
||||
|
||||
|
||||
void transactionReadsPatientResources(HapiFhirRepository theRepository) {
|
||||
var expectedPatientCount = 65;
|
||||
ourPagingProvider.setMaximumPageSize(100);
|
||||
var result = theRepository.search(Bundle.class, Patient.class, withCountParam(100));
|
||||
// count all resources in result
|
||||
int counter = 0;
|
||||
for (Object i : result.getEntry()) {
|
||||
counter++;
|
||||
}
|
||||
// verify all patient resources captured
|
||||
assertEquals(expectedPatientCount, counter,
|
||||
"Patient search results don't match available resources");
|
||||
}
|
||||
|
||||
void transactionReadsEncounterResources(HapiFhirRepository theRepository) {
|
||||
var expectedEncounterCount = 654;
|
||||
ourPagingProvider.setMaximumPageSize(1000);
|
||||
var repository = new HapiFhirRepository(myDaoRegistry, setupRequestDetails(), myRestfulServer);
|
||||
repository.transaction(theBundle);
|
||||
var result = repository.search(Bundle.class, Encounter.class, withCountParam(1000));
|
||||
var result = theRepository.search(Bundle.class, Encounter.class, withCountParam(1000));
|
||||
// count all resources in result
|
||||
int counter = 0;
|
||||
for (Object i : result.getEntry()) {
|
||||
|
|
@ -126,9 +128,7 @@ public class HapiFhirRepositoryR4Test extends BaseCrR4TestServer {
|
|||
"Encounter search results don't match available resources");
|
||||
}
|
||||
|
||||
@Test
|
||||
void repositorySearchForEncounterWithMatchingCode() {
|
||||
loadBundle("ColorectalCancerScreeningsFHIR-bundle.json");
|
||||
void repositorySearchForEncounterWithMatchingCode(HapiFhirRepository theRepository) {
|
||||
|
||||
//SearchConverter validation test for repository
|
||||
List<IQueryParameterType> codeList = new ArrayList<>();
|
||||
|
|
@ -152,10 +152,8 @@ public class HapiFhirRepositoryR4Test extends BaseCrR4TestServer {
|
|||
// replicate repository searchParam list
|
||||
Map<String, List<IQueryParameterType>> searchParams = Map.of("type", codeList, "subject", Collections.singletonList(new ReferenceParam("Patient/numer-EXM130")));
|
||||
|
||||
var repository = new HapiFhirRepository(myDaoRegistry, setupRequestDetails(), myRestfulServer);
|
||||
|
||||
// replicate search for valueset codes
|
||||
var result = repository.search(Bundle.class, Encounter.class, searchParams);
|
||||
var result = theRepository.search(Bundle.class, Encounter.class, searchParams);
|
||||
|
||||
// count all resources in result
|
||||
int counter = 0;
|
||||
|
|
@ -167,14 +165,11 @@ public class HapiFhirRepositoryR4Test extends BaseCrR4TestServer {
|
|||
"Encounter search results don't match available resources");
|
||||
}
|
||||
|
||||
@Test
|
||||
void transactionReadsImmunizationResources() {
|
||||
void transactionReadsImmunizationResources(HapiFhirRepository theRepository) {
|
||||
var expectedEncounterCount = 638;
|
||||
var theBundle = readResource(Bundle.class, MY_TEST_DATA);
|
||||
ourPagingProvider.setMaximumPageSize(1000);
|
||||
var repository = new HapiFhirRepository(myDaoRegistry, setupRequestDetails(), myRestfulServer);
|
||||
repository.transaction(theBundle);
|
||||
var result = repository.search(Bundle.class, Immunization.class, withCountParam(1000));
|
||||
|
||||
var result = theRepository.search(Bundle.class, Immunization.class, withCountParam(1000));
|
||||
// count all resources in result
|
||||
int counter = 0;
|
||||
for (Object i : result.getEntry()) {
|
||||
|
|
|
|||
|
|
@ -7,6 +7,7 @@ import org.hl7.fhir.r4.model.MeasureReport;
|
|||
import org.hl7.fhir.r4.model.Observation;
|
||||
import org.hl7.fhir.r4.model.Parameters;
|
||||
import org.hl7.fhir.r4.model.Resource;
|
||||
import org.junit.jupiter.api.BeforeEach;
|
||||
import org.junit.jupiter.api.Test;
|
||||
import org.junit.jupiter.api.extension.ExtendWith;
|
||||
|
||||
|
|
@ -21,6 +22,27 @@ import static org.junit.jupiter.api.Assertions.assertTrue;
|
|||
|
||||
@ExtendWith(SpringExtension.class)
|
||||
class MeasureOperationProviderTest extends BaseCrR4TestServer {
|
||||
@BeforeEach
|
||||
void setup() {
|
||||
// load resources
|
||||
loadBundle("ColorectalCancerScreeningsFHIR-bundle.json");
|
||||
loadBundle("Exm104FhirR4MeasureBundle.json");
|
||||
loadBundle("ClientNonPatientBasedMeasureBundle.json");
|
||||
loadBundle("multiversion/EXM124-7.0.000-bundle.json");
|
||||
loadBundle("multiversion/EXM124-9.0.000-bundle.json");
|
||||
loadBundle("largeValueSetMeasureTest-Bundle.json");
|
||||
loadBundle("BCSEHEDISMY2022-bundle.json");
|
||||
}
|
||||
@Test
|
||||
void runMeasureTests(){
|
||||
// run tests
|
||||
assertNotNull(testMeasureEvaluateExm130());
|
||||
assertNotNull(testMeasureEvaluateExm104());
|
||||
testClientNonPatientBasedMeasureEvaluate();
|
||||
testMeasureEvaluateMultiVersion();
|
||||
testLargeValuesetMeasure();
|
||||
testHedis2022();
|
||||
}
|
||||
|
||||
public MeasureReport runEvaluateMeasure(String periodStart, String periodEnd, String subject, String measureId, String reportType, String practitioner){
|
||||
|
||||
|
|
@ -31,28 +53,81 @@ class MeasureOperationProviderTest extends BaseCrR4TestServer {
|
|||
parametersEval.addParameter("reportType", reportType);
|
||||
parametersEval.addParameter("subject", subject);
|
||||
|
||||
var report = ourClient.operation().onInstance("Measure/" + measureId)
|
||||
return ourClient.operation().onInstance("Measure/" + measureId)
|
||||
.named(ProviderConstants.CR_OPERATION_EVALUATE_MEASURE)
|
||||
.withParameters(parametersEval)
|
||||
.returnResourceType(MeasureReport.class)
|
||||
.execute();
|
||||
|
||||
assertNotNull(report);
|
||||
|
||||
return report;
|
||||
}
|
||||
MeasureReport testMeasureEvaluateExm130() {
|
||||
return runEvaluateMeasure("2019-01-01", "2019-12-31", "Patient/numer-EXM130", "ColorectalCancerScreeningsFHIR", "Individual", null);
|
||||
}
|
||||
|
||||
@Test
|
||||
void testMeasureEvaluate_EXM130() {
|
||||
loadBundle("ColorectalCancerScreeningsFHIR-bundle.json");
|
||||
runEvaluateMeasure("2019-01-01", "2019-12-31", "Patient/numer-EXM130", "ColorectalCancerScreeningsFHIR", "Individual", null);
|
||||
}
|
||||
@Test
|
||||
void testMeasureEvaluate_EXM104() {
|
||||
loadBundle("Exm104FhirR4MeasureBundle.json");
|
||||
runEvaluateMeasure("2019-01-01", "2019-12-31", "Patient/numer-EXM104", "measure-EXM104-8.2.000", "Individual", null);
|
||||
MeasureReport testMeasureEvaluateExm104() {
|
||||
return runEvaluateMeasure("2019-01-01", "2019-12-31", "Patient/numer-EXM104", "measure-EXM104-8.2.000", "Individual", null);
|
||||
}
|
||||
|
||||
void testHedis2022() {
|
||||
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-5", 0, 0, 0, 0, false,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-7", 1, 1, 0, 0, true,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-9", 0, 0, 0, 0, true,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-21", 1, 0, 1, 0, true,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-23", 1, 1, 0, 0, true,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-65", 1, 1, 0, 1, true,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
}
|
||||
|
||||
void testClientNonPatientBasedMeasureEvaluate() {
|
||||
|
||||
var measure = read(new IdType("Measure", "InitialInpatientPopulation"));
|
||||
assertNotNull(measure);
|
||||
|
||||
var returnMeasureReport = runEvaluateMeasure("2019-01-01", "2020-01-01", "Patient/97f27374-8a5c-4aa1-a26f-5a1ab03caa47", "InitialInpatientPopulation", "Individual", null);
|
||||
|
||||
|
||||
String populationName = "initial-population";
|
||||
int expectedCount = 2;
|
||||
|
||||
Optional<MeasureReport.MeasureReportGroupPopulationComponent> population = returnMeasureReport.getGroup().get(0)
|
||||
.getPopulation().stream().filter(x -> x.hasCode() && x.getCode().hasCoding()
|
||||
&& x.getCode().getCoding().get(0).getCode().equals(populationName))
|
||||
.findFirst();
|
||||
|
||||
assertTrue(population.isPresent(), String.format("Unable to locate a population with id \"%s\"", populationName));
|
||||
assertEquals(population.get().getCount(), expectedCount,
|
||||
String.format("expected count for population \"%s\" did not match", populationName));
|
||||
}
|
||||
void testMeasureEvaluateMultiVersion() {
|
||||
|
||||
assertNotNull(runEvaluateMeasure("2019-01-01", "2020-01-01", "Patient/numer-EXM124", "measure-EXM124-7.0.000", "Individual", null));
|
||||
assertNotNull(runEvaluateMeasure("2019-01-01", "2020-01-01", "Patient/numer-EXM124", "measure-EXM124-9.0.000", "Individual", null));
|
||||
|
||||
}
|
||||
|
||||
void testLargeValuesetMeasure() throws NoSuchElementException {
|
||||
|
||||
var returnMeasureReport = runEvaluateMeasure("2023-01-01", "2024-01-01", null, "CMSTest", "population", null);
|
||||
|
||||
String populationName = "numerator";
|
||||
int expectedCount = 1;
|
||||
|
||||
Optional<MeasureReport.MeasureReportGroupPopulationComponent> population = returnMeasureReport.getGroup().get(0)
|
||||
.getPopulation().stream().filter(x -> x.hasCode() && x.getCode().hasCoding()
|
||||
&& x.getCode().getCoding().get(0).getCode().equals(populationName))
|
||||
.findFirst();
|
||||
assertTrue(population.isPresent(), String.format("population \"%s\" not found in report", populationName));
|
||||
assertEquals(
|
||||
expectedCount,
|
||||
population.get().getCount(),
|
||||
String.format("expected count for population \"%s\" did not match", populationName)
|
||||
);
|
||||
}
|
||||
private void runWithPatient(String measureId, String patientId, int initialPopulationCount, int denominatorCount,
|
||||
int denominatorExclusionCount, int numeratorCount, boolean enrolledDuringParticipationPeriod,
|
||||
String participationPeriod) {
|
||||
|
|
@ -88,76 +163,4 @@ class MeasureOperationProviderTest extends BaseCrR4TestServer {
|
|||
assertNotNull(participationPeriodObs);
|
||||
assertEquals(participationPeriod, participationPeriodObs.getValueCodeableConcept().getCodingFirstRep().getCode());
|
||||
}
|
||||
|
||||
@Test
|
||||
void testBCSEHEDISMY2022() {
|
||||
loadBundle("BCSEHEDISMY2022-bundle.json");
|
||||
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-5", 0, 0, 0, 0, false,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-7", 1, 1, 0, 0, true,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-9", 0, 0, 0, 0, true,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-21", 1, 0, 1, 0, true,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-23", 1, 1, 0, 0, true,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
runWithPatient("BCSEHEDISMY2022", "Patient/Patient-65", 1, 1, 0, 1, true,
|
||||
"Interval[2020-10-01T00:00:00.000, 2022-12-31T23:59:59.999]");
|
||||
}
|
||||
|
||||
@Test
|
||||
void testClientNonPatientBasedMeasureEvaluate() {
|
||||
this.loadBundle("ClientNonPatientBasedMeasureBundle.json");
|
||||
|
||||
var measure = read(new IdType("Measure", "InitialInpatientPopulation"));
|
||||
assertNotNull(measure);
|
||||
|
||||
var returnMeasureReport = runEvaluateMeasure("2019-01-01", "2020-01-01", "Patient/97f27374-8a5c-4aa1-a26f-5a1ab03caa47", "InitialInpatientPopulation", "Individual", null);
|
||||
|
||||
|
||||
String populationName = "initial-population";
|
||||
int expectedCount = 2;
|
||||
|
||||
Optional<MeasureReport.MeasureReportGroupPopulationComponent> population = returnMeasureReport.getGroup().get(0)
|
||||
.getPopulation().stream().filter(x -> x.hasCode() && x.getCode().hasCoding()
|
||||
&& x.getCode().getCoding().get(0).getCode().equals(populationName))
|
||||
.findFirst();
|
||||
|
||||
assertTrue(population.isPresent(), String.format("Unable to locate a population with id \"%s\"", populationName));
|
||||
assertEquals(population.get().getCount(), expectedCount,
|
||||
String.format("expected count for population \"%s\" did not match", populationName));
|
||||
}
|
||||
|
||||
@Test
|
||||
void testMeasureEvaluateMultiVersion() {
|
||||
this.loadBundle("multiversion/EXM124-7.0.000-bundle.json");
|
||||
this.loadBundle("multiversion/EXM124-9.0.000-bundle.json");
|
||||
|
||||
runEvaluateMeasure("2019-01-01", "2020-01-01", "Patient/numer-EXM124", "measure-EXM124-7.0.000", "Individual", null);
|
||||
runEvaluateMeasure("2019-01-01", "2020-01-01", "Patient/numer-EXM124", "measure-EXM124-9.0.000", "Individual", null);
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
void testLargeValuesetMeasure() throws NoSuchElementException {
|
||||
this.loadBundle("largeValueSetMeasureTest-Bundle.json");
|
||||
|
||||
var returnMeasureReport = runEvaluateMeasure("2023-01-01", "2024-01-01", null, "CMSTest", "population", null);
|
||||
|
||||
String populationName = "numerator";
|
||||
int expectedCount = 1;
|
||||
|
||||
Optional<MeasureReport.MeasureReportGroupPopulationComponent> population = returnMeasureReport.getGroup().get(0)
|
||||
.getPopulation().stream().filter(x -> x.hasCode() && x.getCode().hasCoding()
|
||||
&& x.getCode().getCoding().get(0).getCode().equals(populationName))
|
||||
.findFirst();
|
||||
assertTrue(population.isPresent(), String.format("population \"%s\" not found in report", populationName));
|
||||
assertEquals(
|
||||
expectedCount,
|
||||
population.get().getCount(),
|
||||
String.format("expected count for population \"%s\" did not match", populationName)
|
||||
);
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -4,7 +4,6 @@ import ca.uhn.fhir.cr.TestCqlProperties;
|
|||
import ca.uhn.fhir.cr.TestCrConfig;
|
||||
import ca.uhn.fhir.cr.common.CqlThreadFactory;
|
||||
import ca.uhn.fhir.cr.config.r4.CrR4Config;
|
||||
import ca.uhn.fhir.rest.api.SearchStyleEnum;
|
||||
import org.cqframework.cql.cql2elm.CqlCompilerOptions;
|
||||
import org.cqframework.cql.cql2elm.model.CompiledLibrary;
|
||||
import org.cqframework.cql.cql2elm.model.Model;
|
||||
|
|
@ -13,7 +12,6 @@ import org.hl7.elm.r1.VersionedIdentifier;
|
|||
import org.opencds.cqf.cql.engine.execution.CqlEngine;
|
||||
import org.opencds.cqf.cql.engine.runtime.Code;
|
||||
import org.opencds.cqf.fhir.cql.EvaluationSettings;
|
||||
import org.opencds.cqf.fhir.cql.engine.retrieve.BaseRetrieveProvider;
|
||||
import org.opencds.cqf.fhir.cql.engine.retrieve.RetrieveSettings;
|
||||
import org.opencds.cqf.fhir.cql.engine.terminology.TerminologySettings;
|
||||
import org.opencds.cqf.fhir.cr.measure.CareGapsProperties;
|
||||
|
|
|
|||
|
|
@ -645,7 +645,7 @@
|
|||
{
|
||||
"type": "depends-on",
|
||||
"display": "Code system SNOMEDCT:2017-09",
|
||||
"resource": "http://snomed.info/sct|http://snomed.info/sct/version/201709"
|
||||
"resource": "http://snomed.info/sct/version/201709"
|
||||
},
|
||||
{
|
||||
"type": "depends-on",
|
||||
|
|
@ -91120,7 +91120,7 @@
|
|||
{
|
||||
"type": "depends-on",
|
||||
"display": "Code system SNOMEDCT:2017-09",
|
||||
"resource": "http://snomed.info/sct|http://snomed.info/sct/version/201709"
|
||||
"resource": "http://snomed.info"
|
||||
},
|
||||
{
|
||||
"type": "depends-on",
|
||||
|
|
@ -149191,13 +149191,46 @@
|
|||
}
|
||||
],
|
||||
"gender": "male",
|
||||
"birthDate": "1965-01-01"
|
||||
"birthDate": "1965-01-01",
|
||||
"generalPractitioner":[
|
||||
{"reference": "Practitioner/practitioner-EXM130"}
|
||||
]
|
||||
},
|
||||
"request": {
|
||||
"method": "PUT",
|
||||
"url": "Patient/numer-EXM130"
|
||||
}
|
||||
},
|
||||
{"resource":{
|
||||
"resourceType": "Group",
|
||||
"id": "group-EXM130",
|
||||
"type": "person",
|
||||
"actual": true,
|
||||
"member": [
|
||||
{ "entity": { "reference": "Patient/denom-EXM130" } },
|
||||
{ "entity": { "reference": "Patient/numer-EXM130" } },
|
||||
{ "entity": { "reference": "Patient/neg-ip-EXM130" } }
|
||||
]
|
||||
},
|
||||
"request": {
|
||||
"method": "PUT",
|
||||
"url": "Group/group-EXM130"
|
||||
}
|
||||
},
|
||||
{"resource":{
|
||||
"resourceType": "Practitioner",
|
||||
"id": "practitioner-EXM130",
|
||||
"name": [ {
|
||||
"family": "Dawg",
|
||||
"given": [ "Jay" ],
|
||||
"prefix": [ "Dr" ]
|
||||
} ]
|
||||
},
|
||||
"request": {
|
||||
"method": "PUT",
|
||||
"url": "Practitioner/practitioner-EXM130"
|
||||
}
|
||||
},
|
||||
{
|
||||
"resource": {
|
||||
"resourceType": "ValueSet",
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-deployable-pom</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
4
pom.xml
4
pom.xml
|
|
@ -9,7 +9,7 @@
|
|||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<packaging>pom</packaging>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<name>HAPI-FHIR</name>
|
||||
<description>An open-source implementation of the FHIR specification in Java.</description>
|
||||
|
|
@ -1006,7 +1006,7 @@
|
|||
<ucum_version>1.0.8</ucum_version>
|
||||
|
||||
<!-- CQL Support -->
|
||||
<clinical-reasoning.version>3.3.1</clinical-reasoning.version>
|
||||
<clinical-reasoning.version>3.4.0</clinical-reasoning.version>
|
||||
|
||||
<!-- Site properties -->
|
||||
<fontawesomeVersion>5.4.1</fontawesomeVersion>
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -4,7 +4,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@
|
|||
<parent>
|
||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||
<artifactId>hapi-fhir</artifactId>
|
||||
<version>7.1.9-SNAPSHOT</version>
|
||||
<version>7.1.10-SNAPSHOT</version>
|
||||
|
||||
<relativePath>../../pom.xml</relativePath>
|
||||
</parent>
|
||||
|
|
|
|||
Loading…
Reference in New Issue