Add postgres example
This commit is contained in:
James Agnew
parent
d8c99363db
commit
e686ff7aa7
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@ -142,6 +142,12 @@
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<artifactId>phloc-schematron</artifactId>
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</dependency>
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<dependency>
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<groupId>org.postgresql</groupId>
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<artifactId>postgresql</artifactId>
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<version>9.4.1210.jre7</version>
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</dependency>
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</dependencies>
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<build>
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@ -15,16 +15,23 @@ import org.springframework.orm.jpa.JpaTransactionManager;
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import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
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import org.springframework.transaction.annotation.EnableTransactionManagement;
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import ca.uhn.fhir.jpa.config.BaseJavaConfigDstu2;
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import ca.uhn.fhir.jpa.config.BaseJavaConfigDstu3;
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import ca.uhn.fhir.jpa.dao.DaoConfig;
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import ca.uhn.fhir.jpa.util.SubscriptionsRequireManualActivationInterceptorDstu2;
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import ca.uhn.fhir.jpa.util.SubscriptionsRequireManualActivationInterceptorDstu3;
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import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
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import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
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import ca.uhn.fhir.rest.server.interceptor.ResponseHighlighterInterceptor;
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/**
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* This class isn't used by default by the example, but
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* you can use it as a config if you want to support DSTU3
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* instead of DSTU2 in your server.
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*
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* See https://github.com/jamesagnew/hapi-fhir/issues/278
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*/
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@Configuration
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@EnableTransactionManagement()
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public class FhirServerConfig extends BaseJavaConfigDstu2 {
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public class FhirServerConfig extends BaseJavaConfigDstu3 {
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/**
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* Configure FHIR properties around the the JPA server via this bean
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@ -48,10 +55,10 @@ public class FhirServerConfig extends BaseJavaConfigDstu2 {
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@Bean(destroyMethod = "close")
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public DataSource dataSource() {
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BasicDataSource retVal = new BasicDataSource();
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retVal.setDriver(new org.apache.derby.jdbc.EmbeddedDriver());
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retVal.setUrl("jdbc:derby:directory:target/jpaserver_derby_files;create=true");
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retVal.setUsername("");
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retVal.setPassword("");
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retVal.setDriver(new org.postgresql.Driver());
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retVal.setUrl("jdbc:postgresql://localhost:5432/hapi");
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retVal.setUsername("hapi");
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retVal.setPassword("mysecretpassword");
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return retVal;
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}
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@ -68,7 +75,7 @@ public class FhirServerConfig extends BaseJavaConfigDstu2 {
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private Properties jpaProperties() {
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Properties extraProperties = new Properties();
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extraProperties.put("hibernate.dialect", org.hibernate.dialect.DerbyTenSevenDialect.class.getName());
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extraProperties.put("hibernate.dialect", org.hibernate.dialect.PostgreSQL94Dialect.class.getName());
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extraProperties.put("hibernate.format_sql", "true");
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extraProperties.put("hibernate.show_sql", "false");
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extraProperties.put("hibernate.hbm2ddl.auto", "update");
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@ -80,6 +87,7 @@ public class FhirServerConfig extends BaseJavaConfigDstu2 {
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extraProperties.put("hibernate.search.default.directory_provider", "filesystem");
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extraProperties.put("hibernate.search.default.indexBase", "target/lucenefiles");
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extraProperties.put("hibernate.search.lucene_version", "LUCENE_CURRENT");
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// extraProperties.put("hibernate.search.default.worker.execution", "async");
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return extraProperties;
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}
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@ -107,7 +115,7 @@ public class FhirServerConfig extends BaseJavaConfigDstu2 {
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@Bean(autowire = Autowire.BY_TYPE)
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public IServerInterceptor subscriptionSecurityInterceptor() {
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SubscriptionsRequireManualActivationInterceptorDstu2 retVal = new SubscriptionsRequireManualActivationInterceptorDstu2();
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SubscriptionsRequireManualActivationInterceptorDstu3 retVal = new SubscriptionsRequireManualActivationInterceptorDstu3();
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return retVal;
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}
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@ -1,129 +0,0 @@
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package ca.uhn.fhir.jpa.demo;
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import java.util.Properties;
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import javax.persistence.EntityManagerFactory;
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import javax.sql.DataSource;
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import org.apache.commons.dbcp2.BasicDataSource;
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import org.apache.commons.lang3.time.DateUtils;
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import org.hibernate.jpa.HibernatePersistenceProvider;
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import org.springframework.beans.factory.annotation.Autowire;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.Configuration;
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import org.springframework.orm.jpa.JpaTransactionManager;
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import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
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import org.springframework.transaction.annotation.EnableTransactionManagement;
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import ca.uhn.fhir.jpa.config.BaseJavaConfigDstu3;
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import ca.uhn.fhir.jpa.dao.DaoConfig;
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import ca.uhn.fhir.jpa.util.SubscriptionsRequireManualActivationInterceptorDstu3;
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import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
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import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
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import ca.uhn.fhir.rest.server.interceptor.ResponseHighlighterInterceptor;
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/**
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* This class isn't used by default by the example, but
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* you can use it as a config if you want to support DSTU3
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* instead of DSTU2 in your server.
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*
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* See https://github.com/jamesagnew/hapi-fhir/issues/278
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*/
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@Configuration
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@EnableTransactionManagement()
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public class FhirServerConfigDstu3 extends BaseJavaConfigDstu3 {
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/**
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* Configure FHIR properties around the the JPA server via this bean
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*/
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@Bean()
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public DaoConfig daoConfig() {
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DaoConfig retVal = new DaoConfig();
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retVal.setSubscriptionEnabled(true);
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retVal.setSubscriptionPollDelay(5000);
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retVal.setSubscriptionPurgeInactiveAfterMillis(DateUtils.MILLIS_PER_HOUR);
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retVal.setAllowMultipleDelete(true);
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return retVal;
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}
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/**
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* The following bean configures the database connection. The 'url' property value of "jdbc:derby:directory:jpaserver_derby_files;create=true" indicates that the server should save resources in a
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* directory called "jpaserver_derby_files".
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*
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* A URL to a remote database could also be placed here, along with login credentials and other properties supported by BasicDataSource.
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*/
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@Bean(destroyMethod = "close")
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public DataSource dataSource() {
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BasicDataSource retVal = new BasicDataSource();
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retVal.setDriver(new org.apache.derby.jdbc.EmbeddedDriver());
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retVal.setUrl("jdbc:derby:directory:target/jpaserver_derby_files;create=true");
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retVal.setUsername("");
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retVal.setPassword("");
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return retVal;
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}
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@Bean()
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public LocalContainerEntityManagerFactoryBean entityManagerFactory() {
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LocalContainerEntityManagerFactoryBean retVal = new LocalContainerEntityManagerFactoryBean();
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retVal.setPersistenceUnitName("HAPI_PU");
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retVal.setDataSource(dataSource());
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retVal.setPackagesToScan("ca.uhn.fhir.jpa.entity");
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retVal.setPersistenceProvider(new HibernatePersistenceProvider());
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retVal.setJpaProperties(jpaProperties());
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return retVal;
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}
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private Properties jpaProperties() {
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Properties extraProperties = new Properties();
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extraProperties.put("hibernate.dialect", org.hibernate.dialect.DerbyTenSevenDialect.class.getName());
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extraProperties.put("hibernate.format_sql", "true");
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extraProperties.put("hibernate.show_sql", "false");
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extraProperties.put("hibernate.hbm2ddl.auto", "update");
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extraProperties.put("hibernate.jdbc.batch_size", "20");
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extraProperties.put("hibernate.cache.use_query_cache", "false");
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extraProperties.put("hibernate.cache.use_second_level_cache", "false");
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extraProperties.put("hibernate.cache.use_structured_entries", "false");
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extraProperties.put("hibernate.cache.use_minimal_puts", "false");
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extraProperties.put("hibernate.search.default.directory_provider", "filesystem");
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extraProperties.put("hibernate.search.default.indexBase", "target/lucenefiles");
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extraProperties.put("hibernate.search.lucene_version", "LUCENE_CURRENT");
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// extraProperties.put("hibernate.search.default.worker.execution", "async");
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return extraProperties;
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}
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/**
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* Do some fancy logging to create a nice access log that has details about each incoming request.
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*/
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public IServerInterceptor loggingInterceptor() {
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LoggingInterceptor retVal = new LoggingInterceptor();
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retVal.setLoggerName("fhirtest.access");
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retVal.setMessageFormat(
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"Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] Operation[${operationType} ${operationName} ${idOrResourceName}] UA[${requestHeader.user-agent}] Params[${requestParameters}] ResponseEncoding[${responseEncodingNoDefault}]");
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retVal.setLogExceptions(true);
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retVal.setErrorMessageFormat("ERROR - ${requestVerb} ${requestUrl}");
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return retVal;
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}
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/**
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* This interceptor adds some pretty syntax highlighting in responses when a browser is detected
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*/
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@Bean(autowire = Autowire.BY_TYPE)
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public IServerInterceptor responseHighlighterInterceptor() {
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ResponseHighlighterInterceptor retVal = new ResponseHighlighterInterceptor();
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return retVal;
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}
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@Bean(autowire = Autowire.BY_TYPE)
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public IServerInterceptor subscriptionSecurityInterceptor() {
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SubscriptionsRequireManualActivationInterceptorDstu3 retVal = new SubscriptionsRequireManualActivationInterceptorDstu3();
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return retVal;
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}
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@Bean()
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public JpaTransactionManager transactionManager(EntityManagerFactory entityManagerFactory) {
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JpaTransactionManager retVal = new JpaTransactionManager();
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retVal.setEntityManagerFactory(entityManagerFactory);
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return retVal;
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}
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}
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@ -43,76 +43,39 @@ public class JpaServerDemo extends RestfulServer {
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super.initialize();
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/*
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* We want to support FHIR DSTU2 format. This means that the server
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* will use the DSTU2 bundle format and other DSTU2 encoding changes.
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* We want to support FHIR DSTU3 format. This means that the server
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* will use the DSTU3 bundle format and other DSTU3 encoding changes.
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*
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* If you want to use DSTU1 instead, change the following line, and change the 2 occurrences of dstu2 in web.xml to dstu1
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* If you want to use DSTU1 instead, change the following line, and change the 3 occurrences of dstu2 in web.xml to dstu1
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*/
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FhirVersionEnum fhirVersion = FhirVersionEnum.DSTU2;
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setFhirContext(new FhirContext(fhirVersion));
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setFhirContext(FhirContext.forDstu3());
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// Get the spring context from the web container (it's declared in web.xml)
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myAppCtx = ContextLoaderListener.getCurrentWebApplicationContext();
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/*
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* The BaseJavaConfigDstu2.java class is a spring configuration
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* The BaseJavaConfigDstu3.java class is a spring configuration
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* file which is automatically generated as a part of hapi-fhir-jpaserver-base and
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* contains bean definitions for a resource provider for each resource type
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*/
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String resourceProviderBeanName;
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if (fhirVersion == FhirVersionEnum.DSTU1) {
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resourceProviderBeanName = "myResourceProvidersDstu1";
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} else if (fhirVersion == FhirVersionEnum.DSTU2) {
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resourceProviderBeanName = "myResourceProvidersDstu2";
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} else if (fhirVersion == FhirVersionEnum.DSTU3) {
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resourceProviderBeanName = "myResourceProvidersDstu3";
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} else {
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throw new IllegalStateException();
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}
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List<IResourceProvider> beans = myAppCtx.getBean(resourceProviderBeanName, List.class);
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List<IResourceProvider> beans = myAppCtx.getBean("myResourceProvidersDstu3", List.class);
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setResourceProviders(beans);
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/*
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* The system provider implements non-resource-type methods, such as
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* transaction, and global history.
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*/
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Object systemProvider;
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if (fhirVersion == FhirVersionEnum.DSTU1) {
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systemProvider = myAppCtx.getBean("mySystemProviderDstu1", JpaSystemProviderDstu1.class);
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} else if (fhirVersion == FhirVersionEnum.DSTU2) {
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systemProvider = myAppCtx.getBean("mySystemProviderDstu2", JpaSystemProviderDstu2.class);
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} else if (fhirVersion == FhirVersionEnum.DSTU3) {
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systemProvider = myAppCtx.getBean("mySystemProviderDstu3", JpaSystemProviderDstu3.class);
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} else {
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throw new IllegalStateException();
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}
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setPlainProviders(systemProvider);
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setPlainProviders(myAppCtx.getBean("mySystemProviderDstu3", JpaSystemProviderDstu3.class));
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/*
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* The conformance provider exports the supported resources, search parameters, etc for
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* this server. The JPA version adds resource counts to the exported statement, so it
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* is a nice addition.
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*/
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if (fhirVersion == FhirVersionEnum.DSTU1) {
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IFhirSystemDao<List<IResource>, MetaDt> systemDao = myAppCtx.getBean("mySystemDaoDstu1", IFhirSystemDao.class);
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JpaConformanceProviderDstu1 confProvider = new JpaConformanceProviderDstu1(this, systemDao);
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confProvider.setImplementationDescription("Example Server");
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setServerConformanceProvider(confProvider);
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} else if (fhirVersion == FhirVersionEnum.DSTU2) {
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IFhirSystemDao<Bundle, MetaDt> systemDao = myAppCtx.getBean("mySystemDaoDstu2", IFhirSystemDao.class);
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JpaConformanceProviderDstu2 confProvider = new JpaConformanceProviderDstu2(this, systemDao,
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myAppCtx.getBean(DaoConfig.class));
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confProvider.setImplementationDescription("Example Server");
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setServerConformanceProvider(confProvider);
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} else if (fhirVersion == FhirVersionEnum.DSTU3) {
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IFhirSystemDao<org.hl7.fhir.dstu3.model.Bundle, Meta> systemDao = myAppCtx.getBean("mySystemDaoDstu3", IFhirSystemDao.class);
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JpaConformanceProviderDstu3 confProvider = new JpaConformanceProviderDstu3(this, systemDao,
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myAppCtx.getBean(DaoConfig.class));
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confProvider.setImplementationDescription("Example Server");
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setServerConformanceProvider(confProvider);
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} else {
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throw new IllegalStateException();
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}
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IFhirSystemDao<org.hl7.fhir.dstu3.model.Bundle, Meta> systemDao = myAppCtx.getBean("mySystemDaoDstu3", IFhirSystemDao.class);
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JpaConformanceProviderDstu3 confProvider = new JpaConformanceProviderDstu3(this, systemDao, myAppCtx.getBean(DaoConfig.class));
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confProvider.setImplementationDescription("Example Server");
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setServerConformanceProvider(confProvider);
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/*
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* Enable ETag Support (this is already the default)
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@ -163,9 +126,7 @@ public class JpaServerDemo extends RestfulServer {
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* so it is a potential security vulnerability. Consider using an AuthorizationInterceptor
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* with this feature.
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*/
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//if (fhirVersion == FhirVersionEnum.DSTU3) {
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// registerProvider(myAppCtx.getBean(TerminologyUploaderProviderDstu3.class));
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//}
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registerProvider(myAppCtx.getBean(TerminologyUploaderProviderDstu3.class));
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}
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}
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@ -1,81 +0,0 @@
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package ca.uhn.fhir.jpa.demo;
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import static org.junit.Assert.assertEquals;
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import java.io.File;
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import java.io.IOException;
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import org.eclipse.jetty.server.Server;
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import org.eclipse.jetty.webapp.WebAppContext;
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import org.hl7.fhir.instance.model.api.IIdType;
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import org.junit.AfterClass;
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import org.junit.BeforeClass;
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import org.junit.Test;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.model.dstu2.resource.Patient;
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import ca.uhn.fhir.rest.client.IGenericClient;
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import ca.uhn.fhir.rest.client.ServerValidationModeEnum;
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import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
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public class ExampleServerIT {
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private static IGenericClient ourClient;
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private static FhirContext ourCtx = FhirContext.forDstu2();
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ExampleServerIT.class);
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private static int ourPort;
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private static Server ourServer;
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private static String ourServerBase;
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@Test
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public void testCreateAndRead() throws IOException {
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String methodName = "testCreateResourceConditional";
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Patient pt = new Patient();
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pt.addName().addFamily(methodName);
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IIdType id = ourClient.create().resource(pt).execute().getId();
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Patient pt2 = ourClient.read().resource(Patient.class).withId(id).execute();
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assertEquals(methodName, pt2.getName().get(0).getFamily().get(0).getValue());
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}
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@AfterClass
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public static void afterClass() throws Exception {
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ourServer.stop();
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}
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@BeforeClass
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public static void beforeClass() throws Exception {
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/*
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* This runs under maven, and I'm not sure how else to figure out the target directory from code..
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*/
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String path = ExampleServerIT.class.getClassLoader().getResource(".keep_hapi-fhir-jpaserver-example").getPath();
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path = new File(path).getParent();
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path = new File(path).getParent();
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path = new File(path).getParent();
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ourLog.info("Project base path is: {}", path);
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ourPort = RandomServerPortProvider.findFreePort();
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ourServer = new Server(ourPort);
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WebAppContext webAppContext = new WebAppContext();
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webAppContext.setContextPath("/");
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webAppContext.setDescriptor(path + "/src/main/webapp/WEB-INF/web.xml");
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webAppContext.setResourceBase(path + "/target/hapi-fhir-jpaserver-example");
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webAppContext.setParentLoaderPriority(true);
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ourServer.setHandler(webAppContext);
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ourServer.start();
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ourCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
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ourCtx.getRestfulClientFactory().setSocketTimeout(1200 * 1000);
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ourServerBase = "http://localhost:" + ourPort + "/baseDstu2";
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ourClient = ourCtx.newRestfulGenericClient(ourServerBase);
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ourClient.registerInterceptor(new LoggingInterceptor(true));
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}
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}
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@ -1,36 +0,0 @@
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package ca.uhn.fhir.jpa.demo;
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import java.io.IOException;
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import java.net.ServerSocket;
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import java.util.ArrayList;
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import java.util.List;
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|
||||
/**
|
||||
* Provides server ports
|
||||
*/
|
||||
public class RandomServerPortProvider {
|
||||
|
||||
private static List<Integer> ourPorts = new ArrayList<Integer>();
|
||||
|
||||
public static int findFreePort() {
|
||||
ServerSocket server;
|
||||
try {
|
||||
server = new ServerSocket(0);
|
||||
int port = server.getLocalPort();
|
||||
ourPorts.add(port);
|
||||
server.close();
|
||||
Thread.sleep(500);
|
||||
return port;
|
||||
} catch (IOException e) {
|
||||
throw new Error(e);
|
||||
} catch (InterruptedException e) {
|
||||
throw new Error(e);
|
||||
}
|
||||
}
|
||||
|
||||
public static List<Integer> list() {
|
||||
return ourPorts;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
Loading…
Reference in New Issue