Re-enable "Flush SP cache after SP change" (#4635)

* Revert "Revert "Flush SP cache after SP change (#4566)" (#4614)"

This reverts commit 9492999ed6.

* Additions for performance

* HAPI version bump

* Test logging improvement

* Test fixes

* Test fix

* Test fix

* Compile fix

* Fix

* License headers

* Test fix

hapi-deployable-pom/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		 <groupId>ca.uhn.hapi.fhir</groupId>
 		 <artifactId>hapi-fhir</artifactId>
-		 <version>6.5.7-SNAPSHOT</version>
+		 <version>6.5.8-SNAPSHOT</version>
 		 <relativePath>../pom.xml</relativePath>
 	 </parent>
 

hapi-fhir-android/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-base/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-base/src/main/java/ca/uhn/fhir/util/BundleBuilder.java

@@ -22,6 +22,7 @@ package ca.uhn.fhir.util;
 import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
 import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
 import ca.uhn.fhir.context.FhirContext;
+import ca.uhn.fhir.context.FhirVersionEnum;
 import ca.uhn.fhir.context.RuntimeResourceDefinition;
 import ca.uhn.fhir.model.primitive.IdDt;
 import org.apache.commons.lang3.Validate;
@@ -85,8 +86,13 @@ public class BundleBuilder {
 		mySearchChild = myEntryDef.getChildByName("search");
 		mySearchDef = mySearchChild.getChildByName("search");
 
+		if (myContext.getVersion().getVersion().isEqualOrNewerThan(FhirVersionEnum.DSTU3)) {
 			myMetaChild = myBundleDef.getChildByName("meta");
 			myMetaDef = myMetaChild.getChildByName("meta");
+		} else {
+			myMetaChild = null;
+			myMetaDef = null;
+		}
 
 		myEntryResourceChild = myEntryDef.getChildByName("resource");
 		myEntryFullUrlChild = myEntryDef.getChildByName("fullUrl");
@@ -346,12 +352,16 @@ public class BundleBuilder {
 	}
 
 	/**
-	 * Creates new search instance for the specified entry
+	 * Creates new search instance for the specified entry.
+	 * Note that this method does not work for DSTU2 model classes, it will only work
+	 * on DSTU3+.
 	 *
 	 * @param entry Entry to create search instance for
 	 * @return Returns the search instance
 	 */
 	public IBaseBackboneElement addSearch(IBase entry) {
+		Validate.isTrue(myContext.getVersion().getVersion().isEqualOrNewerThan(FhirVersionEnum.DSTU3), "This method may only be called for FHIR version DSTU3 and above");
+
 		IBase searchInstance = mySearchDef.newInstance();
 		mySearchChild.getMutator().setValue(entry, searchInstance);
 		return (IBaseBackboneElement) searchInstance;
@@ -400,7 +410,13 @@ public class BundleBuilder {
 		return (T) myBundle;
 	}
 
+	/**
+	 * Note that this method does not work for DSTU2 model classes, it will only work
+	 * on DSTU3+.
+	 */
 	public BundleBuilder setMetaField(String theFieldName, IBase theFieldValue) {
+		Validate.isTrue(myContext.getVersion().getVersion().isEqualOrNewerThan(FhirVersionEnum.DSTU3), "This method may only be called for FHIR version DSTU3 and above");
+
 		BaseRuntimeChildDefinition.IMutator mutator = myMetaDef.getChildByName(theFieldName).getMutator();
 		mutator.setValue(myBundle.getMeta(), theFieldValue);
 		return this;

hapi-fhir-base/src/main/java/ca/uhn/fhir/util/TaskChunker.java

@@ -0,0 +1,53 @@
+package ca.uhn.fhir.util;
+
+/*-
+ * #%L
+ * HAPI FHIR - Core Library
+ * %%
+ * Copyright (C) 2014 - 2023 Smile CDR, Inc.
+ * %%
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * #L%
+ */
+
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.List;
+import java.util.function.Consumer;
+
+/**
+ * This utility takes an input collection, breaks it up into chunks of a
+ * given maximum chunk size, and then passes those chunks to a consumer for
+ * processing. Use this to break up large tasks into smaller tasks.
+ *
+ * @since 6.6.0
+ * @param <T> The type for the chunks
+ */
+public class TaskChunker<T> {
+
+	public void chunk(Collection<T> theInput, int theChunkSize, Consumer<List<T>> theBatchConsumer) {
+		List<T> input;
+		if (theInput instanceof List) {
+			input = (List<T>) theInput;
+		} else {
+			input = new ArrayList<>(theInput);
+		}
+		for (int i = 0; i < input.size(); i += theChunkSize) {
+			int to = i + theChunkSize;
+			to = Math.min(to, input.size());
+			List<T> batch = input.subList(i, to);
+			theBatchConsumer.accept(batch);
+		}
+	}
+
+}

hapi-fhir-base/src/test/java/ca/uhn/fhir/util/TaskChunkerTest.java

@@ -0,0 +1,53 @@
+package ca.uhn.fhir.util;
+
+import com.google.common.collect.Lists;
+import org.junit.jupiter.api.Test;
+import org.junit.jupiter.api.extension.ExtendWith;
+import org.mockito.ArgumentCaptor;
+import org.mockito.Captor;
+import org.mockito.Mock;
+import org.mockito.junit.jupiter.MockitoExtension;
+
+import javax.annotation.Nonnull;
+
+import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.mockito.Mockito.verify;
+import static org.mockito.Mockito.times;
+
+import java.util.Arrays;
+import java.util.List;
+import java.util.function.Consumer;
+import java.util.stream.IntStream;
+
+@ExtendWith(MockitoExtension.class)
+public class TaskChunkerTest {
+
+	@Mock
+	private Consumer<List<Integer>> myConsumer;
+	@Captor
+	private ArgumentCaptor<List<Integer>> myConsumerCaptor;
+
+	@Test
+	public void testChunk() {
+		// Setup
+		List<Integer> input = newIntRangeList(0, 35);
+
+		// Execute
+		new TaskChunker<Integer>().chunk(input, 10, myConsumer);
+
+		// Verify
+		verify(myConsumer, times(4)).accept(myConsumerCaptor.capture());
+		assertEquals(newIntRangeList(0, 10), myConsumerCaptor.getAllValues().get(0));
+		assertEquals(newIntRangeList(10, 20), myConsumerCaptor.getAllValues().get(1));
+		assertEquals(newIntRangeList(20, 30), myConsumerCaptor.getAllValues().get(2));
+		assertEquals(newIntRangeList(30, 35), myConsumerCaptor.getAllValues().get(3));
+
+	}
+
+	@Nonnull
+	private static List<Integer> newIntRangeList(int startInclusive, int endExclusive) {
+		List<Integer> input = IntStream.range(startInclusive, endExclusive).boxed().toList();
+		return input;
+	}
+
+}

hapi-fhir-bom/pom.xml

@@ -4,14 +4,14 @@
 	<modelVersion>4.0.0</modelVersion>
 	<groupId>ca.uhn.hapi.fhir</groupId>
 	<artifactId>hapi-fhir-bom</artifactId>
-	<version>6.5.7-SNAPSHOT</version>
+	<version>6.5.8-SNAPSHOT</version>
 	<packaging>pom</packaging>
 	<name>HAPI FHIR BOM</name>
 
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-checkstyle/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

hapi-fhir-cli/hapi-fhir-cli-api/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-cli/hapi-fhir-cli-app/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir-cli</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

hapi-fhir-cli/hapi-fhir-cli-jpaserver/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../../hapi-deployable-pom</relativePath>
 	</parent>
 

hapi-fhir-cli/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

hapi-fhir-client-okhttp/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-client/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-converter/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-converter/src/main/java/ca/uhn/hapi/converters/canonical/VersionCanonicalizer.java

@@ -180,6 +180,10 @@ public class VersionCanonicalizer {
 		return myStrategy.searchParameterToCanonical(theSearchParameter);
 	}
 
+	public IBaseResource searchParameterFromCanonical(SearchParameter theSearchParameter) {
+		return myStrategy.searchParameterFromCanonical(theSearchParameter);
+	}
+
 	public IBaseParameters parametersFromCanonical(Parameters theParameters) {
 		return myStrategy.parametersFromCanonical(theParameters);
 	}
@@ -245,6 +249,8 @@ public class VersionCanonicalizer {
 		org.hl7.fhir.r5.model.ValueSet valueSetToValidatorCanonical(IBaseResource theResource);
 
 		org.hl7.fhir.r5.model.CodeSystem codeSystemToValidatorCanonical(IBaseResource theResource);
+
+		IBaseResource searchParameterFromCanonical(SearchParameter theResource);
 	}
 
 	private static class Dstu2Strategy implements IStrategy {
@@ -374,7 +380,7 @@ public class VersionCanonicalizer {
 		@Override
 		public IBaseResource valueSetFromValidatorCanonical(org.hl7.fhir.r5.model.ValueSet theResource) {
 			Resource converted = VersionConvertorFactory_10_50.convertResource(theResource, ADVISOR_10_50);
-			return reencodeToHl7Org(converted);
+			return reencodeFromHl7Org(converted);
 		}
 
 		@Override
@@ -395,6 +401,12 @@ public class VersionCanonicalizer {
 			return (org.hl7.fhir.r5.model.CodeSystem) VersionConvertorFactory_10_50.convertResource(reencoded, ADVISOR_10_50);
 		}
 
+		@Override
+		public IBaseResource searchParameterFromCanonical(SearchParameter theResource) {
+			Resource resource = VersionConvertorFactory_10_50.convertResource(theResource, ADVISOR_10_50);
+			return reencodeFromHl7Org(resource);
+		}
+
 		private Resource reencodeToHl7Org(IBaseResource theInput) {
 			if (myHl7OrgStructures) {
 				return (Resource) theInput;
@@ -487,6 +499,11 @@ public class VersionCanonicalizer {
 		public org.hl7.fhir.r5.model.CodeSystem codeSystemToValidatorCanonical(IBaseResource theResource) {
 			return (org.hl7.fhir.r5.model.CodeSystem) VersionConvertorFactory_14_50.convertResource((org.hl7.fhir.dstu2016may.model.Resource) theResource, ADVISOR_14_50);
 		}
+
+		@Override
+		public IBaseResource searchParameterFromCanonical(SearchParameter theResource) {
+			return VersionConvertorFactory_14_50.convertResource(theResource, ADVISOR_14_50);
+		}
 	}
 
 	private static class Dstu3Strategy implements IStrategy {
@@ -565,6 +582,11 @@ public class VersionCanonicalizer {
 		public org.hl7.fhir.r5.model.CodeSystem codeSystemToValidatorCanonical(IBaseResource theResource) {
 			return (org.hl7.fhir.r5.model.CodeSystem) VersionConvertorFactory_30_50.convertResource((org.hl7.fhir.dstu3.model.Resource) theResource, ADVISOR_30_50);
 		}
+
+		@Override
+		public IBaseResource searchParameterFromCanonical(SearchParameter theResource) {
+			return VersionConvertorFactory_30_50.convertResource(theResource, ADVISOR_30_50);
+		}
 	}
 
 	private static class R4Strategy implements IStrategy {
@@ -643,6 +665,11 @@ public class VersionCanonicalizer {
 			return (org.hl7.fhir.r5.model.CodeSystem) VersionConvertorFactory_40_50.convertResource((org.hl7.fhir.r4.model.Resource) theResource, ADVISOR_40_50);
 		}
 
+		@Override
+		public IBaseResource searchParameterFromCanonical(SearchParameter theResource) {
+			return VersionConvertorFactory_40_50.convertResource(theResource, ADVISOR_40_50);
+		}
+
 	}
 
 	private static class R4BStrategy implements IStrategy {
@@ -729,6 +756,11 @@ public class VersionCanonicalizer {
 			return (org.hl7.fhir.r5.model.CodeSystem) VersionConvertorFactory_43_50.convertResource((org.hl7.fhir.r4b.model.Resource) theResource, ADVISOR_43_50);
 		}
 
+		@Override
+		public IBaseResource searchParameterFromCanonical(SearchParameter theResource) {
+			return VersionConvertorFactory_43_50.convertResource(theResource, ADVISOR_43_50);
+		}
+
 	}
 
 
@@ -809,6 +841,11 @@ public class VersionCanonicalizer {
 			return (org.hl7.fhir.r5.model.CodeSystem) theResource;
 		}
 
+		@Override
+		public IBaseResource searchParameterFromCanonical(SearchParameter theResource) {
+			return theResource;
+		}
+
 	}
 
 

hapi-fhir-converter/src/test/java/ca/uhn/hapi/converters/canonical/VersionCanonicalizerTest.java

@@ -3,7 +3,9 @@ package ca.uhn.hapi.converters.canonical;
 import ca.uhn.fhir.context.FhirVersionEnum;
 import ca.uhn.fhir.model.dstu2.composite.CodingDt;
 import org.hl7.fhir.instance.model.api.IBaseCoding;
+import org.hl7.fhir.instance.model.api.IBaseResource;
 import org.hl7.fhir.r4.model.Coding;
+import org.hl7.fhir.r5.model.SearchParameter;
 import org.junit.jupiter.api.Test;
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
@@ -19,4 +21,14 @@ class VersionCanonicalizerTest {
 		assertEquals("dstuSystem", convertedCoding.getSystem());
 	}
 
+	@Test
+	public void testFromCanonicalSearchParameter() {
+		VersionCanonicalizer canonicalizer = new VersionCanonicalizer(FhirVersionEnum.DSTU2);
+
+		SearchParameter inputR5 = new SearchParameter();
+		inputR5.setUrl("http://foo");
+		ca.uhn.fhir.model.dstu2.resource.SearchParameter outputDstu2 = (ca.uhn.fhir.model.dstu2.resource.SearchParameter) canonicalizer.searchParameterFromCanonical(inputR5);
+		assertEquals("http://foo", outputDstu2.getUrl());
+	}
+
 }

hapi-fhir-dist/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

hapi-fhir-docs/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_6_0/4566-flush-sp-cache-after-sp-change.yaml

@@ -0,0 +1,6 @@
+---
+type: add
+issue: 4566
+title: "When creating or modifying a SearchParameter in the JPA server, the local SearchParameter cache
+   is now immediately flushed. This should help with situations such as tests where a SearchParameter
+   is created and then used before the scheduled cache refresh typically occurs."

hapi-fhir-jacoco/pom.xml

@@ -11,7 +11,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jaxrsserver-base/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpa/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 	<modelVersion>4.0.0</modelVersion>

hapi-fhir-jpaserver-base/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirResourceDao.java

@@ -1025,7 +1025,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IBaseResource> extends B
 		mySearchParamRegistry.requestRefresh();
 	}
 
-	private boolean shouldSkipReindex(RequestDetails theRequestDetails) {
+	protected final boolean shouldSkipReindex(RequestDetails theRequestDetails) {
 		if (theRequestDetails == null) {
 			return false;
 		}

hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/JpaResourceDaoSearchParameter.java

@@ -28,12 +28,17 @@ import com.google.common.annotations.VisibleForTesting;
 import org.hl7.fhir.instance.model.api.IBaseResource;
 import org.hl7.fhir.r5.model.CodeType;
 import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.transaction.support.TransactionSynchronization;
+import org.springframework.transaction.support.TransactionSynchronizationManager;
 
 import java.util.List;
+import java.util.concurrent.atomic.AtomicBoolean;
 import java.util.stream.Collectors;
 
 public class JpaResourceDaoSearchParameter<T extends IBaseResource> extends BaseHapiFhirResourceDao<T> implements IFhirResourceDaoSearchParameter<T> {
 
+	private final AtomicBoolean myCacheReloadTriggered = new AtomicBoolean(false);
+
 	@Autowired
 	private VersionCanonicalizer myVersionCanonicalizer;
 
@@ -41,6 +46,26 @@ public class JpaResourceDaoSearchParameter<T extends IBaseResource> extends Base
 	private SearchParameterDaoValidator mySearchParameterDaoValidator;
 
 	protected void reindexAffectedResources(T theResource, RequestDetails theRequestDetails) {
+
+		/*
+		 * After we commit, flush the search parameter cache. This only helps on the
+		 * local server (ie in a cluster the other servers won't be flushed) but
+		 * the cache is short anyhow, and  flushing locally is better than nothing.
+		 * Many use cases where you would create a search parameter and immediately
+		 * try to use it tend to be on single-server setups anyhow, e.g. unit tests
+		 */
+		if (!shouldSkipReindex(theRequestDetails)) {
+			if (!myCacheReloadTriggered.getAndSet(true)) {
+				TransactionSynchronizationManager.registerSynchronization(new TransactionSynchronization() {
+					@Override
+					public void afterCommit() {
+						myCacheReloadTriggered.set(false);
+						mySearchParamRegistry.forceRefresh();
+					}
+				});
+			}
+		}
+
 		// N.B. Don't do this on the canonicalized version
 		Boolean reindex = theResource != null ? CURRENTLY_REINDEXING.get(theResource) : null;
 

hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/index/SearchParamWithInlineReferencesExtractor.java

@@ -40,6 +40,7 @@ import ca.uhn.fhir.rest.api.server.storage.IResourcePersistentId;
 import ca.uhn.fhir.rest.api.server.storage.NotFoundPid;
 import ca.uhn.fhir.rest.api.server.storage.TransactionDetails;
 import ca.uhn.fhir.rest.server.exceptions.PreconditionFailedException;
+import ca.uhn.fhir.rest.server.exceptions.ResourceVersionConflictException;
 import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
 import ca.uhn.fhir.rest.server.util.ResourceSearchParams;
 import com.google.common.annotations.VisibleForTesting;
@@ -185,7 +186,10 @@ public class SearchParamWithInlineReferencesExtractor extends BaseSearchParamWit
 						}
 
 						String msg = myFhirContext.getLocalizer().getMessage(BaseHapiFhirDao.class, "uniqueIndexConflictFailure", theEntity.getResourceType(), next.getIndexString(), existing.getResource().getIdDt().toUnqualifiedVersionless().getValue(), searchParameterId);
-						throw new PreconditionFailedException(Msg.code(1093) + msg);
+
+						// Use ResourceVersionConflictException here because the HapiTransactionService
+						// catches this and can retry it if needed
+						throw new ResourceVersionConflictException(Msg.code(1093) + msg);
 					}
 				}
 				ourLog.debug("Persisting unique index: {}", next);

hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/QueryChunker.java

@@ -20,6 +20,7 @@
 package ca.uhn.fhir.jpa.util;
 
 import ca.uhn.fhir.jpa.search.builder.SearchBuilder;
+import ca.uhn.fhir.util.TaskChunker;
 
 import java.util.ArrayList;
 import java.util.Collection;
@@ -32,24 +33,10 @@ import java.util.function.Consumer;
  * if it's lots of IDs. I suppose maybe we should be doing this as a join anyhow
  * but this should work too. Sigh.
  */
-public class QueryChunker<T> {
+public class QueryChunker<T> extends TaskChunker<T> {
 
 	public void chunk(Collection<T> theInput, Consumer<List<T>> theBatchConsumer) {
 		chunk(theInput, SearchBuilder.getMaximumPageSize(), theBatchConsumer);
 	}
 
-	public void chunk(Collection<T> theInput, int theChunkSize, Consumer<List<T>> theBatchConsumer) {
-		List<T> input;
-		if (theInput instanceof List) {
-			input = (List<T>) theInput;
-		} else {
-			input = new ArrayList<>(theInput);
-		}
-		for (int i = 0; i < input.size(); i += theChunkSize) {
-			int to = i + theChunkSize;
-			to = Math.min(to, input.size());
-			List<T> batch = input.subList(i, to);
-			theBatchConsumer.accept(batch);
-		}
-	}
 }

hapi-fhir-jpaserver-elastic-test-utilities/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-ips/pom.xml

@@ -3,7 +3,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-mdm/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-model/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-model/src/main/java/ca/uhn/fhir/jpa/model/entity/ResourceTable.java

@@ -818,7 +818,9 @@ public class ResourceTable extends BaseHasResource implements Serializable, IBas
 	}
 
 	private void populateId(IIdType retVal) {
-		if (getTransientForcedId() != null) {
+		if (myFhirId != null) {
+			retVal.setValue(getResourceType() + '/' + myFhirId + '/' + Constants.PARAM_HISTORY + '/' + getVersion());
+		} else if (getTransientForcedId() != null) {
 			// Avoid a join query if possible
 			retVal.setValue(getResourceType() + '/' + getTransientForcedId() + '/' + Constants.PARAM_HISTORY + '/' + getVersion());
 		} else if (getForcedId() == null) {

hapi-fhir-jpaserver-searchparam/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-subscription/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-test-dstu2/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-test-dstu3/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-test-r4/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConcurrentWriteTest.java

@@ -474,7 +474,7 @@ public class FhirResourceDaoR4ConcurrentWriteTest extends BaseJpaR4Test {
 					assertThat(e.getMessage(), containsString("duplicate unique index matching query: Patient?gender=http%3A%2F%2Fhl7.org%2Ffhir%2Fadministrative-gender%7Cmale"));
 				} catch (ResourceVersionConflictException e) {
 					// expected - This is as a result of the unique SP
-					assertThat(e.getMessage(), containsString("would have resulted in a duplicate value for a unique index"));
+					assertThat(e.getMessage(), containsString("duplicate"));
 				}
 			};
 			Future<?> future = myExecutor.submit(task);

hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchCustomSearchParamTest.java

@@ -1744,6 +1744,7 @@ public class FhirResourceDaoR4SearchCustomSearchParamTest extends BaseJpaR4Test
 
 	@Test
 	public void testCompositeWithInvalidTarget() {
+		// Setup
 		SearchParameter sp = new SearchParameter();
 		sp.addBase("Patient");
 		sp.setCode("myDoctor");
@@ -1752,14 +1753,15 @@ public class FhirResourceDaoR4SearchCustomSearchParamTest extends BaseJpaR4Test
 		sp.setStatus(org.hl7.fhir.r4.model.Enumerations.PublicationStatus.ACTIVE);
 		sp.addComponent()
 			.setDefinition("http://foo");
-		mySearchParameterDao.create(sp);
 
 		IAnonymousInterceptor interceptor = mock(IAnonymousInterceptor.class);
 		myInterceptorRegistry.registerAnonymousInterceptor(Pointcut.JPA_PERFTRACE_WARNING, interceptor);
 
 		try {
-			mySearchParamRegistry.forceRefresh();
+			// Test
+			mySearchParameterDao.create(sp);
 
+			// Verify
 			ArgumentCaptor<HookParams> paramsCaptor = ArgumentCaptor.forClass(HookParams.class);
 			verify(interceptor, times(1)).invoke(any(), paramsCaptor.capture());
 

hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java

@@ -228,6 +228,7 @@ public class MultitenantBatchOperationR4Test extends BaseMultitenantResourceProv
 		IIdType obsCancelledB = doCreateResource(reindexTestHelper.buildObservationWithAlleleExtension(Observation.ObservationStatus.CANCELLED));
 
 		reindexTestHelper.createAlleleSearchParameter();
+		ourLog.info("Search params: {}", mySearchParamRegistry.getActiveSearchParams("Observation").getSearchParamNames());
 
 		// The searchparam value is on the observation, but it hasn't been indexed yet
 		myTenantClientInterceptor.setTenantId(TENANT_A);
@@ -255,7 +256,6 @@ public class MultitenantBatchOperationR4Test extends BaseMultitenantResourceProv
 		myBatch2JobHelper.awaitJobCompletion(jobId.getValue());
 
 		// validate
-		ourLog.info("Search params: {}", mySearchParamRegistry.getActiveSearchParams("Observation").getSearchParamNames());
 		logAllTokenIndexes();
 
 		List<String> alleleObservationIds = reindexTestHelper.getAlleleObservationIds(myClient);

hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderCustomSearchParamR4Test.java

@@ -401,10 +401,6 @@ public class ResourceProviderCustomSearchParamR4Test extends BaseResourceProvide
 		fooSp.setStatus(org.hl7.fhir.r4.model.Enumerations.PublicationStatus.ACTIVE);
 		mySearchParameterDao.create(fooSp, mySrd);
 
-		myCaptureQueriesListener.clear();
-		mySearchParamRegistry.forceRefresh();
-		myCaptureQueriesListener.logAllQueriesForCurrentThread();
-
 		Patient pat = new Patient();
 		pat.setGender(AdministrativeGender.MALE);
 		IIdType patId = myPatientDao.create(pat, mySrd).getId().toUnqualifiedVersionless();

hapi-fhir-jpaserver-test-r4b/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-test-r5/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-test-utilities/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-jpaserver-uhnfhirtest/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

hapi-fhir-server-mdm/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-server-openapi/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-server/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-serviceloaders/hapi-fhir-caching-api/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<artifactId>hapi-fhir-serviceloaders</artifactId>
 		<groupId>ca.uhn.hapi.fhir</groupId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

hapi-fhir-serviceloaders/hapi-fhir-caching-caffeine/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<artifactId>hapi-fhir-serviceloaders</artifactId>
 		<groupId>ca.uhn.hapi.fhir</groupId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 
@@ -20,7 +20,7 @@
 		<dependency>
 			<groupId>ca.uhn.hapi.fhir</groupId>
 			<artifactId>hapi-fhir-caching-api</artifactId>
-			<version>6.5.7-SNAPSHOT</version>
+			<version>6.5.8-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>com.github.ben-manes.caffeine</groupId>

hapi-fhir-serviceloaders/hapi-fhir-caching-guava/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<artifactId>hapi-fhir-serviceloaders</artifactId>
 		<groupId>ca.uhn.hapi.fhir</groupId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

hapi-fhir-serviceloaders/hapi-fhir-caching-testing/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<artifactId>hapi-fhir</artifactId>
 		<groupId>ca.uhn.hapi.fhir</groupId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../../pom.xml</relativePath>
 	</parent>
 

hapi-fhir-serviceloaders/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<artifactId>hapi-deployable-pom</artifactId>
 		<groupId>ca.uhn.hapi.fhir</groupId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-spring-boot/hapi-fhir-spring-boot-autoconfigure/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-client-apache/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir-spring-boot-samples</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 	</parent>
 
 	<artifactId>hapi-fhir-spring-boot-sample-client-apache</artifactId>

hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-client-okhttp/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir-spring-boot-samples</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 	</parent>
 
 	<artifactId>hapi-fhir-spring-boot-sample-client-okhttp</artifactId>

hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-server-jersey/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir-spring-boot-samples</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 	</parent>
 
 	<artifactId>hapi-fhir-spring-boot-sample-server-jersey</artifactId>

hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir-spring-boot</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 	</parent>
 
 	<artifactId>hapi-fhir-spring-boot-samples</artifactId>

hapi-fhir-spring-boot/hapi-fhir-spring-boot-starter/pom.xml

@@ -5,7 +5,7 @@
    <parent>
       <groupId>ca.uhn.hapi.fhir</groupId>
       <artifactId>hapi-deployable-pom</artifactId>
-      <version>6.5.7-SNAPSHOT</version>
+      <version>6.5.8-SNAPSHOT</version>
       <relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
    </parent>
 

hapi-fhir-spring-boot/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

hapi-fhir-sql-migrate/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-storage-batch2-jobs/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 	<modelVersion>4.0.0</modelVersion>

hapi-fhir-storage-batch2-test-utilities/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-storage-batch2/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-storage-cr/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-storage-mdm/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 	<modelVersion>4.0.0</modelVersion>

hapi-fhir-storage-test-utilities/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 	<modelVersion>4.0.0</modelVersion>

hapi-fhir-storage/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-storage/src/main/java/ca/uhn/fhir/jpa/partition/BaseRequestPartitionHelperSvc.java

@@ -138,6 +138,14 @@ public abstract class BaseRequestPartitionHelperSvc implements IRequestPartition
 	public RequestPartitionId determineGenericPartitionForRequest(RequestDetails theRequestDetails) {
 		RequestPartitionId retVal = null;
 
+		if (myPartitionSettings.isPartitioningEnabled()) {
+			if (theRequestDetails instanceof SystemRequestDetails) {
+				SystemRequestDetails systemRequestDetails = (SystemRequestDetails) theRequestDetails;
+				retVal = systemRequestDetails.getRequestPartitionId();
+			}
+		}
+
+		if (retVal == null) {
 			if (hasHooks(Pointcut.STORAGE_PARTITION_IDENTIFY_ANY, myInterceptorBroadcaster, theRequestDetails)) {
 				// Interceptor call: STORAGE_PARTITION_IDENTIFY_ANY
 				HookParams params = new HookParams()
@@ -150,6 +158,7 @@ public abstract class BaseRequestPartitionHelperSvc implements IRequestPartition
 				}
 
 			}
+		}
 
 		return retVal;
 	}

hapi-fhir-structures-dstu2.1/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-structures-dstu2/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-structures-dstu2/src/test/java/ca/uhn/fhir/util/BundleBuilderDstu2Test.java

@@ -0,0 +1,212 @@
+package ca.uhn.fhir.util;
+
+import ca.uhn.fhir.context.FhirContext;
+import ca.uhn.fhir.model.dstu2.resource.Bundle;
+import ca.uhn.fhir.model.dstu2.resource.Patient;
+import ca.uhn.fhir.model.dstu2.valueset.BundleTypeEnum;
+import ca.uhn.fhir.model.dstu2.valueset.HTTPVerbEnum;
+import ca.uhn.fhir.model.dstu2.valueset.SearchEntryModeEnum;
+import org.hl7.fhir.instance.model.api.IBase;
+import org.hl7.fhir.instance.model.api.IPrimitiveType;
+import org.junit.jupiter.api.BeforeEach;
+import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.math.BigDecimal;
+import java.util.Calendar;
+import java.util.Date;
+import java.util.GregorianCalendar;
+import java.util.UUID;
+
+import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertNotNull;
+import static org.junit.jupiter.api.Assertions.assertNull;
+import static org.junit.jupiter.api.Assertions.assertSame;
+import static org.junit.jupiter.api.Assertions.fail;
+
+
+public class BundleBuilderDstu2Test {
+
+	private static final Logger ourLog = LoggerFactory.getLogger(BundleBuilderDstu2Test.class);
+	private FhirContext myFhirContext = FhirContext.forDstu2Cached();
+	private Date myCheckDate;
+
+	@BeforeEach
+	public void initDate() {
+		Calendar cal = GregorianCalendar.getInstance();
+		cal.set(2021, 0, 0);
+		myCheckDate = cal.getTime();
+	}
+
+
+	@Test
+	public void testAddEntryUpdate() {
+		BundleBuilder builder = new BundleBuilder(myFhirContext);
+
+		Patient patient = new Patient();
+		patient.setId("http://foo/Patient/123");
+		patient.setActive(true);
+		builder.addTransactionUpdateEntry(patient);
+
+		Bundle bundle = (Bundle) builder.getBundle();
+		ourLog.debug("Bundle:\n{}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
+
+		assertEquals(BundleTypeEnum.TRANSACTION, bundle.getTypeElement().getValueAsEnum());
+		assertEquals(1, bundle.getEntry().size());
+		assertSame(patient, bundle.getEntry().get(0).getResource());
+		assertEquals("http://foo/Patient/123", bundle.getEntry().get(0).getFullUrl());
+		assertEquals("Patient/123", bundle.getEntry().get(0).getRequest().getUrl());
+		assertEquals(HTTPVerbEnum.PUT, bundle.getEntry().get(0).getRequest().getMethodElement().getValueAsEnum());
+	}
+
+	@Test
+	public void testNewPrimitive() {
+		BundleBuilder builder = new BundleBuilder(myFhirContext);
+		IPrimitiveType<Date> datePrimitive = builder.newPrimitive("instant", myCheckDate);
+		assertNotNull(datePrimitive);
+		assertEquals(myCheckDate, datePrimitive.getValue());
+	}
+
+	@Test
+	public void testSettingBundleFields() {
+		String uuid = UUID.randomUUID().toString();
+
+		BundleBuilder builder = new BundleBuilder(myFhirContext);
+		try {
+			builder.setBundleField("id", uuid);
+			fail();
+		} catch (NullPointerException e) {
+			assertEquals("Unable to find field id", e.getMessage());
+
+		}
+
+		try {
+		builder.setMetaField("lastUpdated", builder.newPrimitive("instant", myCheckDate));
+			fail();
+		} catch (IllegalArgumentException e) {
+			assertEquals("This method may only be called for FHIR version DSTU3 and above", e.getMessage());
+		}
+
+	}
+
+
+	@Test
+	public void testAddEntryUpdateConditional() {
+		BundleBuilder builder = new BundleBuilder(myFhirContext);
+
+		Patient patient = new Patient();
+		patient.setId("http://foo/Patient/123");
+		patient.setActive(true);
+		builder.addTransactionUpdateEntry(patient).conditional("Patient?active=true");
+
+		Bundle bundle = (Bundle) builder.getBundle();
+		ourLog.debug("Bundle:\n{}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
+
+		assertEquals(BundleTypeEnum.TRANSACTION, bundle.getTypeElement().getValueAsEnum());
+		assertEquals(1, bundle.getEntry().size());
+		assertSame(patient, bundle.getEntry().get(0).getResource());
+		assertEquals("http://foo/Patient/123", bundle.getEntry().get(0).getFullUrl());
+		assertEquals("Patient?active=true", bundle.getEntry().get(0).getRequest().getUrl());
+		assertEquals(HTTPVerbEnum.PUT, bundle.getEntry().get(0).getRequest().getMethodElement().getValueAsEnum());
+	}
+
+	@Test
+	public void testSearchHandling() {
+		BundleBuilder builder = new BundleBuilder(myFhirContext);
+		IBase entry = builder.addEntry();
+		assertNotNull(entry);
+
+		try {
+			builder.addSearch(entry);
+			fail();
+		} catch (IllegalArgumentException e) {
+			assertEquals("This method may only be called for FHIR version DSTU3 and above", e.getMessage());
+		}
+	}
+
+	@Test
+	public void testAddToEntry() {
+		BundleBuilder builder = new BundleBuilder(myFhirContext);
+
+		IBase entry = builder.addEntry();
+
+		Patient patient = new Patient();
+		patient.setActive(true);
+		builder.addToEntry(entry, "resource", patient);
+
+		Bundle bundle = (Bundle) builder.getBundle();
+		ourLog.debug("Bundle:\n{}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
+
+		assertEquals(1, bundle.getEntry().size());
+	}
+
+	@Test
+	public void testAddEntryCreate() {
+		BundleBuilder builder = new BundleBuilder(myFhirContext);
+
+		Patient patient = new Patient();
+		patient.setActive(true);
+		builder.addTransactionCreateEntry(patient);
+
+		Bundle bundle = (Bundle) builder.getBundle();
+		ourLog.debug("Bundle:\n{}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
+
+		assertEquals(BundleTypeEnum.TRANSACTION, bundle.getTypeElement().getValueAsEnum());
+		assertEquals(1, bundle.getEntry().size());
+		assertSame(patient, bundle.getEntry().get(0).getResource());
+		assertEquals(null, bundle.getEntry().get(0).getFullUrl());
+		assertEquals("Patient", bundle.getEntry().get(0).getRequest().getUrl());
+		assertEquals(HTTPVerbEnum.POST, bundle.getEntry().get(0).getRequest().getMethodElement().getValueAsEnum());
+	}
+
+	@Test
+	public void testAddEntryDelete() {
+		BundleBuilder builder = new BundleBuilder(myFhirContext);
+
+		Patient patient = new Patient();
+		patient.setActive(true);
+		patient.setId("123");
+		builder.addTransactionDeleteEntry(patient);
+		builder.addTransactionDeleteEntry("Patient", "123");
+		Bundle bundle = (Bundle) builder.getBundle();
+
+		ourLog.debug("Bundle:\n{}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
+
+		assertEquals(BundleTypeEnum.TRANSACTION, bundle.getTypeElement().getValueAsEnum());
+		assertEquals(2, bundle.getEntry().size());
+
+		//Check the IBaseresource style entry
+		assertNull(bundle.getEntry().get(0).getResource());
+		assertEquals("Patient/123", bundle.getEntry().get(0).getRequest().getUrl());
+		assertEquals(HTTPVerbEnum.DELETE, bundle.getEntry().get(0).getRequest().getMethodElement().getValueAsEnum());
+
+		//Check the resourcetype + id style entry.
+		assertNull(bundle.getEntry().get(1).getResource());
+		assertEquals("Patient/123", bundle.getEntry().get(1).getRequest().getUrl());
+		assertEquals(HTTPVerbEnum.DELETE, bundle.getEntry().get(1).getRequest().getMethodElement().getValueAsEnum());
+
+
+	}
+
+	@Test
+	public void testAddEntryCreateConditional() {
+		BundleBuilder builder = new BundleBuilder(myFhirContext);
+
+		Patient patient = new Patient();
+		patient.setActive(true);
+		builder.addTransactionCreateEntry(patient).conditional("Patient?active=true");
+
+		Bundle bundle = (Bundle) builder.getBundle();
+		ourLog.debug("Bundle:\n{}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
+
+		assertEquals(BundleTypeEnum.TRANSACTION, bundle.getTypeElement().getValueAsEnum());
+		assertEquals(1, bundle.getEntry().size());
+		assertSame(patient, bundle.getEntry().get(0).getResource());
+		assertEquals(null, bundle.getEntry().get(0).getFullUrl());
+		assertEquals("Patient", bundle.getEntry().get(0).getRequest().getUrl());
+		assertEquals("Patient?active=true", bundle.getEntry().get(0).getRequest().getIfNoneExist());
+		assertEquals(HTTPVerbEnum.POST, bundle.getEntry().get(0).getRequest().getMethodElement().getValueAsEnum());
+	}
+
+}

hapi-fhir-structures-dstu3/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-structures-hl7org-dstu2/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-structures-r4/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-structures-r4/src/test/java/ca/uhn/fhir/util/BundleBuilderR4Test.java

@@ -24,10 +24,10 @@ import static org.junit.jupiter.api.Assertions.*;
 import static org.junit.jupiter.api.Assertions.assertEquals;
 
 
-public class BundleBuilderTest {
+public class BundleBuilderR4Test {
 
-	private static final Logger ourLog = LoggerFactory.getLogger(BundleBuilderTest.class);
+	private static final Logger ourLog = LoggerFactory.getLogger(BundleBuilderR4Test.class);
-	private FhirContext myFhirContext = FhirContext.forR4();
+	private FhirContext myFhirContext = FhirContext.forR4Cached();
 	private Date myCheckDate;
 
 	@BeforeEach

hapi-fhir-structures-r4b/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-structures-r5/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-test-utilities/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-testpage-overlay/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

hapi-fhir-validation-resources-dstu2.1/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-validation-resources-dstu2/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-validation-resources-dstu3/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-validation-resources-r4/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-validation-resources-r4b/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-validation-resources-r5/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-fhir-validation/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-deployable-pom</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
 	</parent>
 

hapi-tinder-plugin/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

hapi-tinder-test/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../pom.xml</relativePath>
 	</parent>
 

pom.xml

@@ -7,7 +7,7 @@
 	<groupId>ca.uhn.hapi.fhir</groupId>
 	<artifactId>hapi-fhir</artifactId>
 	<packaging>pom</packaging>
-	<version>6.5.7-SNAPSHOT</version>
+	<version>6.5.8-SNAPSHOT</version>
 	<name>HAPI-FHIR</name>
 	<description>An open-source implementation of the FHIR specification in Java.</description>
 	<url>https://hapifhir.io</url>

tests/hapi-fhir-base-test-jaxrsserver-kotlin/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../../pom.xml</relativePath>
 	</parent>
 

tests/hapi-fhir-base-test-mindeps-client/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../../pom.xml</relativePath>
 	</parent>
 

tests/hapi-fhir-base-test-mindeps-server/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>ca.uhn.hapi.fhir</groupId>
 		<artifactId>hapi-fhir</artifactId>
-		<version>6.5.7-SNAPSHOT</version>
+		<version>6.5.8-SNAPSHOT</version>
 		<relativePath>../../pom.xml</relativePath>
 	</parent>