mirror of
https://github.com/hapifhir/hapi-fhir.git
synced 2025-02-17 02:15:22 +00:00
Add a test
This commit is contained in:
James Agnew
parent
b13de41e9f
commit
e96500d54f
@ -28,47 +28,9 @@ import ca.uhn.fhir.model.api.annotation.Child;
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import ca.uhn.fhir.model.api.annotation.Description;
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public class RuntimeChildPrimitiveDatatypeDefinition extends BaseRuntimeChildDatatypeDefinition {
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// private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(RuntimeChildPrimitiveDatatypeDefinition.class);
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// private IMutator myReferenceMutator;
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public RuntimeChildPrimitiveDatatypeDefinition(Field theField, String theElementName, Description theDescriptionAnnotation, Child theChildAnnotation, Class<? extends IBase> theDatatype) {
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super(theField, theElementName, theChildAnnotation, theDescriptionAnnotation, theDatatype);
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}
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// @Override
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// void sealAndInitialize(FhirContext theContext, Map<Class<? extends IBase>, BaseRuntimeElementDefinition<?>> theClassToElementDefinitions) {
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// super.sealAndInitialize(theContext, theClassToElementDefinitions);
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//
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// if (theContext.getVersion().getVersion().equals(FhirVersionEnum.DSTU2_HL7ORG)) {
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// if (IReference.class.isAssignableFrom(getDatatype())) {
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// String fieldName = getField().getName() + "Target";
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// try {
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// Field targetField = getField().getDeclaringClass().getField(fieldName);
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// if (List.class.isAssignableFrom(targetField.getType())) {
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// myReferenceMutator = new FieldListMutator();
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// } else if (IBaseResource.class.isAssignableFrom(targetField.getType())) {
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// myReferenceMutator = new FieldPlainMutator();
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// }
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// } catch (Exception e) {
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// ourLog.debug("Unable to find target field named {}", fieldName);
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// }
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// }
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// } else {
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// if (BaseResourceReferenceDt.class.isAssignableFrom(getDatatype())) {
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// myReferenceMutator = new IMutator() {
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// @Override
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// public void addValue(Object theTarget, IBase theValue) {
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// BaseResourceReferenceDt dt = (BaseResourceReferenceDt)theTarget;
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// dt.setResource((IBaseResource) theValue);
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// }};
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// }
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// }
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//
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// }
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//
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// public IMutator getReferenceMutator() {
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// return myReferenceMutator;
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// }
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}
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@ -2,7 +2,6 @@ package ca.uhn.fhir.jpa.config.r5;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.context.ParserOptions;
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import ca.uhn.fhir.jpa.config.BaseConfig;
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import ca.uhn.fhir.jpa.config.BaseConfigDstu3Plus;
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import ca.uhn.fhir.jpa.dao.FulltextSearchSvcImpl;
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import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
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@ -20,7 +19,6 @@ import ca.uhn.fhir.jpa.term.api.ITermVersionAdapterSvc;
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import ca.uhn.fhir.jpa.util.ResourceCountCache;
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import ca.uhn.fhir.jpa.validation.JpaValidationSupportChainR5;
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import ca.uhn.fhir.validation.IInstanceValidatorModule;
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import ca.uhn.fhir.validation.IValidatorModule;
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import org.apache.commons.lang3.time.DateUtils;
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import org.hl7.fhir.r5.hapi.ctx.DefaultProfileValidationSupport;
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import org.hl7.fhir.r5.hapi.ctx.IValidationSupport;
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@ -139,7 +137,7 @@ public class BaseR5Config extends BaseConfigDstu3Plus {
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@Bean(autowire = Autowire.BY_TYPE)
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public SearchParamExtractorR5 searchParamExtractor() {
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return new SearchParamExtractorR5();
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return new SearchParamExtractorR5(ctx, new DefaultProfileValidationSupport(), searchParamRegistry);
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}
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@Bean
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@ -34,6 +34,7 @@ import org.hl7.fhir.instance.model.api.*;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.context.ApplicationContext;
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import javax.annotation.Nullable;
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import javax.annotation.PostConstruct;
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import javax.measure.quantity.Quantity;
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import javax.measure.unit.NonSI;
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@ -110,7 +111,6 @@ public abstract class BaseSearchParamExtractor implements ISearchParamExtractor
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BaseSearchParamExtractor(FhirContext theCtx, ISearchParamRegistry theSearchParamRegistry) {
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myContext = theCtx;
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mySearchParamRegistry = theSearchParamRegistry;
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start();
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}
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@Override
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@ -536,7 +536,6 @@ public abstract class BaseSearchParamExtractor implements ISearchParamExtractor
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for (IBase nextValue : values) {
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addToken_CodeableConcept(theResourceType, theParams, theSearchParam, nextValue);
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}
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}
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private void addDate_Period(String theResourceType, Set<ResourceIndexedSearchParamDate> theParams, RuntimeSearchParam theSearchParam, IBase theValue) {
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@ -859,12 +858,14 @@ public abstract class BaseSearchParamExtractor implements ISearchParamExtractor
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myAddressCountryValueChild = addressDefinition.getChildByName("country");
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myAddressPostalCodeValueChild = addressDefinition.getChildByName("postalCode");
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BaseRuntimeElementCompositeDefinition<?> capabilityStatementDefinition = getContext().getResourceDefinition("CapabilityStatement");
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BaseRuntimeChildDefinition capabilityStatementRestChild = capabilityStatementDefinition.getChildByName("rest");
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BaseRuntimeElementCompositeDefinition<?> capabilityStatementRestDefinition = (BaseRuntimeElementCompositeDefinition<?>) capabilityStatementRestChild.getChildByName("rest");
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BaseRuntimeChildDefinition capabilityStatementRestSecurityValueChild = capabilityStatementRestDefinition.getChildByName("security");
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BaseRuntimeElementCompositeDefinition<?> capabilityStatementRestSecurityDefinition = (BaseRuntimeElementCompositeDefinition<?>) capabilityStatementRestSecurityValueChild.getChildByName("security");
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myCapabilityStatementRestSecurityServiceValueChild = capabilityStatementRestSecurityDefinition.getChildByName("service");
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if (getContext().getVersion().getVersion().isEqualOrNewerThan(FhirVersionEnum.DSTU3)) {
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BaseRuntimeElementCompositeDefinition<?> capabilityStatementDefinition = getContext().getResourceDefinition("CapabilityStatement");
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BaseRuntimeChildDefinition capabilityStatementRestChild = capabilityStatementDefinition.getChildByName("rest");
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BaseRuntimeElementCompositeDefinition<?> capabilityStatementRestDefinition = (BaseRuntimeElementCompositeDefinition<?>) capabilityStatementRestChild.getChildByName("rest");
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BaseRuntimeChildDefinition capabilityStatementRestSecurityValueChild = capabilityStatementRestDefinition.getChildByName("security");
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BaseRuntimeElementCompositeDefinition<?> capabilityStatementRestSecurityDefinition = (BaseRuntimeElementCompositeDefinition<?>) capabilityStatementRestSecurityValueChild.getChildByName("security");
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myCapabilityStatementRestSecurityServiceValueChild = capabilityStatementRestSecurityDefinition.getChildByName("service");
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}
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BaseRuntimeElementCompositeDefinition<?> periodDefinition = (BaseRuntimeElementCompositeDefinition<?>) getContext().getElementDefinition("Period");
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myPeriodStartValueChild = periodDefinition.getChildByName("start");
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@ -20,6 +20,8 @@ package ca.uhn.fhir.jpa.searchparam.extractor;
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* #L%
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*/
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.jpa.searchparam.registry.ISearchParamRegistry;
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import ca.uhn.fhir.model.dstu2.composite.ContactPointDt;
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import ca.uhn.fhir.util.FhirTerser;
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import org.hl7.fhir.instance.model.api.IBase;
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@ -32,6 +34,16 @@ import java.util.List;
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public class SearchParamExtractorDstu2 extends BaseSearchParamExtractor implements ISearchParamExtractor {
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public SearchParamExtractorDstu2() {
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}
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/**
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* Constructor for unit tests
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*/
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SearchParamExtractorDstu2(FhirContext theCtx, ISearchParamRegistry theSearchParamRegistry) {
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super(theCtx, theSearchParamRegistry);
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start();
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}
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@Override
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protected IValueExtractor getPathValueExtractor(IBaseResource theResource, String theSinglePath) {
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@ -61,6 +61,7 @@ public class SearchParamExtractorDstu3 extends BaseSearchParamExtractor implemen
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super(theCtx, theSearchParamRegistry);
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myValidationSupport = theValidationSupport;
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start(null);
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start();
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}
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@Override
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@ -57,6 +57,7 @@ public class SearchParamExtractorR4 extends BaseSearchParamExtractor implements
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super(theCtx, theSearchParamRegistry);
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myValidationSupport = theValidationSupport;
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initFhirPath();
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start();
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}
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@Override
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@ -20,10 +20,13 @@ package ca.uhn.fhir.jpa.searchparam.extractor;
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* #L%
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*/
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.jpa.searchparam.registry.ISearchParamRegistry;
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import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.exceptions.PathEngineException;
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import org.hl7.fhir.instance.model.api.IBaseResource;
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import org.hl7.fhir.r5.context.IWorkerContext;
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import org.hl7.fhir.r5.hapi.ctx.DefaultProfileValidationSupport;
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import org.hl7.fhir.r5.hapi.ctx.HapiWorkerContext;
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import org.hl7.fhir.r5.hapi.ctx.IValidationSupport;
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import org.hl7.fhir.r5.model.*;
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@ -44,13 +47,19 @@ public class SearchParamExtractorR5 extends BaseSearchParamExtractor implements
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private IValidationSupport myValidationSupport;
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private FHIRPathEngine myFhirPathEngine;
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/**
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* Constructor
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*/
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public SearchParamExtractorR5() {
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super();
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}
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/**
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* Constructor for unit tests
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*/
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public SearchParamExtractorR5(FhirContext theCtx, DefaultProfileValidationSupport theDefaultProfileValidationSupport, ISearchParamRegistry theSearchParamRegistry) {
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super(theCtx, theSearchParamRegistry);
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myValidationSupport = theDefaultProfileValidationSupport;
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start();
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}
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@Override
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@PostConstruct
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public void start() {
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@ -0,0 +1,286 @@
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package ca.uhn.fhir.jpa.searchparam.extractor;
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import ca.uhn.fhir.context.*;
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import ca.uhn.fhir.jpa.searchparam.JpaRuntimeSearchParam;
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import ca.uhn.fhir.jpa.searchparam.registry.ISearchParamRegistry;
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import org.hl7.fhir.dstu3.hapi.ctx.DefaultProfileValidationSupport;
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import org.hl7.fhir.instance.model.api.IBase;
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import org.hl7.fhir.instance.model.api.IBaseEnumeration;
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import org.hl7.fhir.instance.model.api.IBaseResource;
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import org.hl7.fhir.instance.model.api.IPrimitiveType;
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import org.junit.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import java.util.*;
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import java.util.concurrent.atomic.AtomicInteger;
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import static org.junit.Assert.assertEquals;
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public class SearchParamExtractorMegaTest {
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private static final Logger ourLog = LoggerFactory.getLogger(SearchParamExtractorMegaTest.class);
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/**
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* This test is my magnum opus :P
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*
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* It navigates almost every possible path in every FHIR resource in every version of FHIR,
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* and creates a resource with that path populated, just to ensure that we can index it
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* without generating any warnings.
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*/
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@Test
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public void testAllCombinations() throws Exception {
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FhirContext ctx = FhirContext.forDstu2();
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ISearchParamRegistry searchParamRegistry = new MySearchParamRegistry(ctx);
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process(ctx, new SearchParamExtractorDstu2(ctx, searchParamRegistry));
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ctx = FhirContext.forDstu3();
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searchParamRegistry = new MySearchParamRegistry(ctx);
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process(ctx, new SearchParamExtractorDstu3(null, ctx, new DefaultProfileValidationSupport(), searchParamRegistry));
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ctx = FhirContext.forR4();
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searchParamRegistry = new MySearchParamRegistry(ctx);
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process(ctx, new SearchParamExtractorR4(null, ctx, new org.hl7.fhir.r4.hapi.ctx.DefaultProfileValidationSupport(), searchParamRegistry));
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ctx = FhirContext.forR5();
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searchParamRegistry = new MySearchParamRegistry(ctx);
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process(ctx, new SearchParamExtractorR5(ctx, new org.hl7.fhir.r5.hapi.ctx.DefaultProfileValidationSupport(), searchParamRegistry));
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}
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private void process(FhirContext theCtx, BaseSearchParamExtractor theExtractor) throws Exception {
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AtomicInteger indexesCounter = new AtomicInteger();
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for (String nextResourceName : theCtx.getResourceNames()) {
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RuntimeResourceDefinition resourceDefinition = theCtx.getResourceDefinition(nextResourceName);
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List<BaseRuntimeElementDefinition> elementStack = new ArrayList<>();
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List<BaseRuntimeChildDefinition> childStack = new ArrayList<>();
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processElement(theCtx, theExtractor, resourceDefinition, elementStack, childStack, indexesCounter);
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}
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ourLog.info("Found {} indexes", indexesCounter.get());
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}
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private void processElement(FhirContext theCtx, BaseSearchParamExtractor theExtractor, BaseRuntimeElementDefinition theElementDef, List<BaseRuntimeElementDefinition> theElementStack, List<BaseRuntimeChildDefinition> theChildStack, AtomicInteger theIndexesCounter) throws Exception {
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if (theElementDef.getName().equals("ElementDefinition")) {
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return;
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}
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theElementStack.add(theElementDef);
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if (theElementDef instanceof BaseRuntimeElementCompositeDefinition) {
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BaseRuntimeElementCompositeDefinition<?> composite = (BaseRuntimeElementCompositeDefinition) theElementDef;
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for (BaseRuntimeChildDefinition nextChild : composite.getChildren()) {
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if (theChildStack.contains(nextChild)) {
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continue;
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}
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theChildStack.add(nextChild);
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if (nextChild instanceof RuntimeChildResourceBlockDefinition) {
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BaseRuntimeElementDefinition<?> def = nextChild.getChildByName(nextChild.getElementName());
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processElement(theCtx, theExtractor, def, theElementStack, theChildStack, theIndexesCounter);
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} else if (nextChild instanceof BaseRuntimeChildDatatypeDefinition) {
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BaseRuntimeElementDefinition<?> def = nextChild.getChildByName(nextChild.getElementName());
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processElement(theCtx, theExtractor, def, theElementStack, theChildStack, theIndexesCounter);
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} else if (nextChild instanceof RuntimeChildExtension) {
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// ignore extensions
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} else if (nextChild instanceof RuntimeChildContainedResources) {
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// ignore extensions
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} else if (nextChild instanceof RuntimeChildResourceDefinition) {
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// ignore extensions
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} else if (nextChild instanceof RuntimeChildChoiceDefinition) {
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RuntimeChildChoiceDefinition choice = (RuntimeChildChoiceDefinition) nextChild;
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for (String nextOption : choice.getValidChildNames()) {
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BaseRuntimeElementDefinition<?> def = nextChild.getChildByName(nextOption);
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processElement(theCtx, theExtractor, def, theElementStack, theChildStack, theIndexesCounter);
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}
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} else if (nextChild instanceof RuntimeChildDirectResource) {
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// ignore
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} else {
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throw new Exception("Unexpected child type: " + nextChild.getClass());
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}
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theChildStack.remove(theChildStack.size() - 1);
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}
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} else if (theElementDef instanceof RuntimePrimitiveDatatypeDefinition) {
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handlePathToPrimitive(theCtx, theExtractor, theElementStack, theChildStack, theIndexesCounter);
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} else if (theElementDef instanceof RuntimePrimitiveDatatypeNarrativeDefinition) {
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// ignore
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} else if (theElementDef instanceof RuntimePrimitiveDatatypeXhtmlHl7OrgDefinition) {
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// ignore
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} else {
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throw new Exception("Unexpected def type: " + theElementDef.getClass());
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}
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theElementStack.remove(theElementStack.size() - 1);
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}
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private void handlePathToPrimitive(FhirContext theCtx, BaseSearchParamExtractor theExtractor, List<BaseRuntimeElementDefinition> theElementStack, List<BaseRuntimeChildDefinition> theChildStack, AtomicInteger theIndexesCounter) {
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IBase previousObject = null;
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IBaseResource resource = null;
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StringBuilder path = new StringBuilder(theElementStack.get(0).getName());
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Object previousChildArguments = null;
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for (int i = 0; i < theElementStack.size(); i++) {
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BaseRuntimeElementDefinition nextElement = theElementStack.get(i);
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if (i > 0) {
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previousChildArguments = theChildStack.get(i-1).getInstanceConstructorArguments();
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}
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IBase nextObject = nextElement.newInstance(previousChildArguments);
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if (i == 0) {
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resource = (IBaseResource) nextObject;
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} else {
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BaseRuntimeChildDefinition child = theChildStack.get(i - 1);
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child.getMutator().addValue(previousObject, nextObject);
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path.append(".").append(child.getChildNameByDatatype(nextObject.getClass()));
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}
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previousObject = nextObject;
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}
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IPrimitiveType<?> leaf = (IPrimitiveType<?>) previousObject;
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if (leaf instanceof IBaseEnumeration<?>) {
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return;
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}
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String typeName = theCtx.getElementDefinition(leaf.getClass()).getRootParentDefinition().getName();
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switch (typeName) {
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case "boolean":
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leaf.setValueAsString("true");
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break;
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case "date":
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leaf.setValueAsString("2019-10-10");
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break;
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case "dateTime":
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case "instant":
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leaf.setValueAsString("2019-10-10T11:11:11Z");
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break;
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case "integer":
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case "decimal":
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leaf.setValueAsString("1");
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break;
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default:
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leaf.setValueAsString("a");
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break;
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}
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ourLog.info("Found path: {}", path);
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ISearchParamExtractor.SearchParamSet<?> set;
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set = theExtractor.extractSearchParamCoords(resource);
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assertEquals(0, set.getWarnings().size());
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theIndexesCounter.addAndGet(set.size());
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set = theExtractor.extractSearchParamDates(resource);
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assertEquals(0, set.getWarnings().size());
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theIndexesCounter.addAndGet(set.size());
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set = theExtractor.extractSearchParamNumber(resource);
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assertEquals(0, set.getWarnings().size());
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theIndexesCounter.addAndGet(set.size());
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set = theExtractor.extractSearchParamStrings(resource);
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assertEquals(0, set.getWarnings().size());
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theIndexesCounter.addAndGet(set.size());
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set = theExtractor.extractSearchParamQuantity(resource);
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assertEquals(0, set.getWarnings().size());
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theIndexesCounter.addAndGet(set.size());
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set = theExtractor.extractSearchParamTokens(resource);
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assertEquals(0, set.getWarnings().size());
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theIndexesCounter.addAndGet(set.size());
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set = theExtractor.extractSearchParamUri(resource);
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assertEquals(0, set.getWarnings().size());
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theIndexesCounter.addAndGet(set.size());
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}
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private static class MySearchParamRegistry implements ISearchParamRegistry {
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private final FhirContext myCtx;
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private List<RuntimeSearchParam> myAddedSearchParams = new ArrayList<>();
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private MySearchParamRegistry(FhirContext theCtx) {
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myCtx = theCtx;
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}
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public void addSearchParam(RuntimeSearchParam... theSearchParam) {
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myAddedSearchParams.clear();
|
||||
for (RuntimeSearchParam next : theSearchParam) {
|
||||
myAddedSearchParams.add(next);
|
||||
}
|
||||
}
|
||||
|
||||
@Override
|
||||
public void forceRefresh() {
|
||||
// nothing
|
||||
}
|
||||
|
||||
@Override
|
||||
public RuntimeSearchParam getActiveSearchParam(String theResourceName, String theParamName) {
|
||||
throw new UnsupportedOperationException();
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean refreshCacheIfNecessary() {
|
||||
// nothing
|
||||
return false;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Map<String, Map<String, RuntimeSearchParam>> getActiveSearchParams() {
|
||||
throw new UnsupportedOperationException();
|
||||
}
|
||||
|
||||
@Override
|
||||
public Map<String, RuntimeSearchParam> getActiveSearchParams(String theResourceName) {
|
||||
RuntimeResourceDefinition nextResDef = myCtx.getResourceDefinition(theResourceName);
|
||||
Map<String, RuntimeSearchParam> sps = new HashMap<>();
|
||||
for (RuntimeSearchParam nextSp : nextResDef.getSearchParams()) {
|
||||
sps.put(nextSp.getName(), nextSp);
|
||||
}
|
||||
for (RuntimeSearchParam next : myAddedSearchParams) {
|
||||
sps.put(next.getName(), next);
|
||||
}
|
||||
return sps;
|
||||
}
|
||||
|
||||
@Override
|
||||
public List<JpaRuntimeSearchParam> getActiveUniqueSearchParams(String theResourceName, Set<String> theParamNames) {
|
||||
throw new UnsupportedOperationException();
|
||||
}
|
||||
|
||||
@Override
|
||||
public List<JpaRuntimeSearchParam> getActiveUniqueSearchParams(String theResourceName) {
|
||||
throw new UnsupportedOperationException();
|
||||
}
|
||||
|
||||
@Override
|
||||
public void requestRefresh() {
|
||||
// nothing
|
||||
}
|
||||
|
||||
@Override
|
||||
public RuntimeSearchParam getSearchParamByName(RuntimeResourceDefinition theResourceDef, String theParamName) {
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Collection<RuntimeSearchParam> getSearchParamsByResourceType(RuntimeResourceDefinition theResourceDef) {
|
||||
return null;
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
Loading…
x
Reference in New Issue
Block a user