Don't apply last updated to includes
This commit is contained in:
James Agnew
parent
b9b85f5ba9
commit
ea1f17762e
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@ -25,9 +25,9 @@ import static org.apache.commons.lang3.StringUtils.isNotBlank;
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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@ -36,6 +36,7 @@ import static org.apache.commons.lang3.StringUtils.isNotBlank;
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* #L%
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*/
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@SuppressWarnings("UnusedReturnValue")
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public class DateRangeParam implements IQueryParameterAnd<DateParam> {
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private static final long serialVersionUID = 1L;
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@ -208,6 +209,52 @@ public class DateRangeParam implements IQueryParameterAnd<DateParam> {
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return this;
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}
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/**
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* Sets the lower bound using a string that is compliant with
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* FHIR dateTime format (ISO-8601).
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* <p>
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* This lower bound is assumed to have a <code>ge</code>
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* (greater than or equals) modifier.
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* </p>
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*/
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public DateRangeParam setLowerBound(String theLowerBound) {
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setLowerBound(new DateParam(GREATERTHAN_OR_EQUALS, theLowerBound));
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return this;
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}
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/**
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* Sets the lower bound to be greaterthan or equal to the given date
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*/
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public DateRangeParam setLowerBoundInclusive(Date theLowerBound) {
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validateAndSet(new DateParam(ParamPrefixEnum.GREATERTHAN_OR_EQUALS, theLowerBound), myUpperBound);
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return this;
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}
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/**
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* Sets the upper bound to be greaterthan or equal to the given date
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*/
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public DateRangeParam setUpperBoundInclusive(Date theUpperBound) {
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validateAndSet(myLowerBound, new DateParam(ParamPrefixEnum.LESSTHAN_OR_EQUALS, theUpperBound));
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return this;
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}
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/**
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* Sets the lower bound to be greaterthan to the given date
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*/
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public DateRangeParam setLowerBoundExclusive(Date theLowerBound) {
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validateAndSet(new DateParam(ParamPrefixEnum.GREATERTHAN, theLowerBound), myUpperBound);
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return this;
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}
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/**
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* Sets the upper bound to be greaterthan to the given date
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*/
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public DateRangeParam setUpperBoundExclusive(Date theUpperBound) {
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validateAndSet(myLowerBound, new DateParam(ParamPrefixEnum.LESSTHAN, theUpperBound));
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return this;
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}
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public Date getLowerBoundAsInstant() {
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if (myLowerBound == null) {
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return null;
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@ -237,6 +284,19 @@ public class DateRangeParam implements IQueryParameterAnd<DateParam> {
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return myUpperBound;
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}
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/**
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* Sets the upper bound using a string that is compliant with
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* FHIR dateTime format (ISO-8601).
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* <p>
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* This upper bound is assumed to have a <code>le</code>
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* (less than or equals) modifier.
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* </p>
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*/
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public DateRangeParam setUpperBound(String theUpperBound) {
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setUpperBound(new DateParam(LESSTHAN_OR_EQUALS, theUpperBound));
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return this;
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}
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public DateRangeParam setUpperBound(DateParam theUpperBound) {
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validateAndSet(myLowerBound, theUpperBound);
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return this;
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@ -298,19 +358,6 @@ public class DateRangeParam implements IQueryParameterAnd<DateParam> {
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return (getLowerBoundAsInstant() == null) && (getUpperBoundAsInstant() == null);
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}
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/**
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* Sets the lower bound using a string that is compliant with
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* FHIR dateTime format (ISO-8601).
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* <p>
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* This lower bound is assumed to have a <code>ge</code>
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* (greater than or equals) modifier.
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* </p>
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*/
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public DateRangeParam setLowerBound(String theLowerBound) {
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setLowerBound(new DateParam(GREATERTHAN_OR_EQUALS, theLowerBound));
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return this;
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}
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/**
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* Sets the range from a pair of dates, inclusive on both ends
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*
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@ -394,19 +441,6 @@ public class DateRangeParam implements IQueryParameterAnd<DateParam> {
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validateAndSet(lowerBound, upperBound);
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}
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/**
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* Sets the upper bound using a string that is compliant with
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* FHIR dateTime format (ISO-8601).
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* <p>
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* This upper bound is assumed to have a <code>le</code>
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* (less than or equals) modifier.
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* </p>
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*/
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public DateRangeParam setUpperBound(String theUpperBound) {
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setUpperBound(new DateParam(LESSTHAN_OR_EQUALS, theUpperBound));
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return this;
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}
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@Override
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public void setValuesAsQueryTokens(FhirContext theContext, String theParamName, List<QualifiedParamList> theParameters)
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throws InvalidRequestException {
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@ -512,4 +546,5 @@ public class DateRangeParam implements IQueryParameterAnd<DateParam> {
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myLowerBound = lowerBound;
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myUpperBound = upperBound;
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}
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}
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@ -38,8 +38,8 @@ public interface ISearchBuilder {
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void loadResourcesByPid(Collection<Long> theIncludePids, List<IBaseResource> theResourceListToPopulate, Set<Long> theRevIncludedPids, boolean theForHistoryOperation, EntityManager theEntityManager,
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FhirContext theContext, IDao theDao);
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Set<Long> loadReverseIncludes(IDao theCallingDao, FhirContext theContext, EntityManager theEntityManager, Collection<Long> theMatches, Set<Include> theRevIncludes, boolean theReverseMode,
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DateRangeParam theLastUpdated);
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Set<Long> loadIncludes(IDao theCallingDao, FhirContext theContext, EntityManager theEntityManager, Collection<Long> theMatches, Set<Include> theRevIncludes, boolean theReverseMode,
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DateRangeParam theLastUpdated);
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/**
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* How many results may be fetched at once
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@ -9,9 +9,9 @@ package ca.uhn.fhir.jpa.dao;
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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@ -112,7 +112,7 @@ public class SearchBuilder implements ISearchBuilder {
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protected IResourceTagDao myResourceTagDao;
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protected IResourceSearchViewDao myResourceSearchViewDao;
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/**
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* Constructor
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*/
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@ -1595,17 +1595,17 @@ public class SearchBuilder implements ISearchBuilder {
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// -- get the resource from the searchView
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Collection<ResourceSearchView> resourceSearchViewList = myResourceSearchViewDao.findByResourceIds(pids);
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//-- preload all tags with tag definition if any
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Map<Long, Collection<ResourceTag>> tagMap = getResourceTagMap(resourceSearchViewList);
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Long resourceId = null;
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for (ResourceSearchView next : resourceSearchViewList) {
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Class<? extends IBaseResource> resourceType = context.getResourceDefinition(next.getResourceType()).getImplementingClass();
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resourceId = next.getId();
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IBaseResource resource = theDao.toResource(resourceType, next, tagMap.get(resourceId), theForHistoryOperation);
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if (resource == null) {
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ourLog.warn("Unable to find resource {}/{}/_history/{} in database", next.getResourceType(), next.getIdDt().getIdPart(), next.getVersion());
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@ -1635,30 +1635,30 @@ public class SearchBuilder implements ISearchBuilder {
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}
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}
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private Map<Long, Collection<ResourceTag>> getResourceTagMap(Collection<ResourceSearchView> theResourceSearchViewList) {
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private Map<Long, Collection<ResourceTag>> getResourceTagMap(Collection<ResourceSearchView> theResourceSearchViewList) {
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List<Long> idList = new ArrayList<Long>(theResourceSearchViewList.size());
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//-- find all resource has tags
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for (ResourceSearchView resource: theResourceSearchViewList) {
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for (ResourceSearchView resource: theResourceSearchViewList) {
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if (resource.isHasTags())
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idList.add(resource.getId());
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}
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Map<Long, Collection<ResourceTag>> tagMap = new HashMap<>();
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//-- no tags
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if (idList.size() == 0)
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return tagMap;
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//-- get all tags for the idList
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Collection<ResourceTag> tagList = myResourceTagDao.findByResourceIds(idList);
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//-- build the map, key = resourceId, value = list of ResourceTag
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Long resourceId;
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Collection<ResourceTag> tagCol;
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for (ResourceTag tag : tagList) {
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resourceId = tag.getResourceId();
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tagCol = tagMap.get(resourceId);
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if (tagCol == null) {
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@ -1670,7 +1670,7 @@ public class SearchBuilder implements ISearchBuilder {
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}
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}
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return tagMap;
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return tagMap;
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}
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@Override
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@ -1712,8 +1712,8 @@ public class SearchBuilder implements ISearchBuilder {
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* THIS SHOULD RETURN HASHSET and not just Set because we add to it later (so it can't be Collections.emptySet())
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*/
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@Override
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public HashSet<Long> loadReverseIncludes(IDao theCallingDao, FhirContext theContext, EntityManager theEntityManager, Collection<Long> theMatches, Set<Include> theRevIncludes,
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boolean theReverseMode, DateRangeParam theLastUpdated) {
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public HashSet<Long> loadIncludes(IDao theCallingDao, FhirContext theContext, EntityManager theEntityManager, Collection<Long> theMatches, Set<Include> theRevIncludes,
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boolean theReverseMode, DateRangeParam theLastUpdated) {
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if (theMatches.size() == 0) {
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return new HashSet<>();
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}
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@ -1820,8 +1820,10 @@ public class SearchBuilder implements ISearchBuilder {
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}
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}
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if (theLastUpdated != null && (theLastUpdated.getLowerBoundAsInstant() != null || theLastUpdated.getUpperBoundAsInstant() != null)) {
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pidsToInclude = new HashSet<>(filterResourceIdsByLastUpdated(theEntityManager, theLastUpdated, pidsToInclude));
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if (theReverseMode) {
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if (theLastUpdated != null && (theLastUpdated.getLowerBoundAsInstant() != null || theLastUpdated.getUpperBoundAsInstant() != null)) {
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pidsToInclude = new HashSet<>(filterResourceIdsByLastUpdated(theEntityManager, theLastUpdated, pidsToInclude));
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}
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}
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for (Long next : pidsToInclude) {
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if (original.contains(next) == false && allAdded.contains(next) == false) {
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@ -2172,7 +2174,7 @@ public class SearchBuilder implements ISearchBuilder {
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myCurrentOffset = end;
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Collection<Long> pidsToScan = myCurrentPids.subList(start, end);
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Set<Include> includes = Collections.singleton(new Include("*", true));
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Set<Long> newPids = loadReverseIncludes(myCallingDao, myContext, myEntityManager, pidsToScan, includes, false, myParams.getLastUpdated());
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Set<Long> newPids = loadIncludes(myCallingDao, myContext, myEntityManager, pidsToScan, includes, false, myParams.getLastUpdated());
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myCurrentIterator = newPids.iterator();
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}
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@ -1,5 +1,13 @@
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package ca.uhn.fhir.jpa.entity;
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import ca.uhn.fhir.model.api.Include;
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import ca.uhn.fhir.rest.param.DateRangeParam;
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import javax.persistence.*;
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import javax.validation.constraints.NotNull;
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import java.io.Serializable;
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import java.util.*;
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import static org.apache.commons.lang3.StringUtils.left;
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/*
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@ -11,9 +19,9 @@ import static org.apache.commons.lang3.StringUtils.left;
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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@ -22,106 +30,88 @@ import static org.apache.commons.lang3.StringUtils.left;
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* #L%
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*/
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import java.io.Serializable;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.Collections;
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import java.util.Date;
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import java.util.HashSet;
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import java.util.Set;
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import javax.persistence.*;
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import javax.validation.constraints.NotNull;
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import org.hibernate.annotations.Fetch;
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import ca.uhn.fhir.model.api.Include;
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import ca.uhn.fhir.rest.param.DateRangeParam;
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@Entity
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@Table(name = "HFJ_SEARCH", uniqueConstraints= {
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@UniqueConstraint(name="IDX_SEARCH_UUID", columnNames="SEARCH_UUID")
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}, indexes= {
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@Index(name="IDX_SEARCH_LASTRETURNED", columnList="SEARCH_LAST_RETURNED"),
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@Index(name="IDX_SEARCH_RESTYPE_HASHS", columnList="RESOURCE_TYPE,SEARCH_QUERY_STRING_HASH,CREATED")
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@Table(name = "HFJ_SEARCH", uniqueConstraints = {
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@UniqueConstraint(name = "IDX_SEARCH_UUID", columnNames = "SEARCH_UUID")
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}, indexes = {
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@Index(name = "IDX_SEARCH_LASTRETURNED", columnList = "SEARCH_LAST_RETURNED"),
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@Index(name = "IDX_SEARCH_RESTYPE_HASHS", columnList = "RESOURCE_TYPE,SEARCH_QUERY_STRING_HASH,CREATED")
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})
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public class Search implements Serializable {
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private static final int MAX_SEARCH_QUERY_STRING = 10000;
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private static final int UUID_COLUMN_LENGTH = 36;
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private static final int FAILURE_MESSAGE_LENGTH = 500;
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private static final long serialVersionUID = 1L;
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public static final int MAX_SEARCH_QUERY_STRING = 10000;
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public static final int UUID_COLUMN_LENGTH = 36;
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@Temporal(TemporalType.TIMESTAMP)
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@Column(name="CREATED", nullable=false, updatable=false)
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@Column(name = "CREATED", nullable = false, updatable = false)
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private Date myCreated;
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@Column(name="FAILURE_CODE", nullable=true)
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@Column(name = "FAILURE_CODE", nullable = true)
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private Integer myFailureCode;
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@Column(name="FAILURE_MESSAGE", length=FAILURE_MESSAGE_LENGTH, nullable=true)
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@Column(name = "FAILURE_MESSAGE", length = FAILURE_MESSAGE_LENGTH, nullable = true)
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private String myFailureMessage;
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@Id
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@GeneratedValue(strategy = GenerationType.AUTO, generator="SEQ_SEARCH")
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@SequenceGenerator(name="SEQ_SEARCH", sequenceName="SEQ_SEARCH")
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@GeneratedValue(strategy = GenerationType.AUTO, generator = "SEQ_SEARCH")
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@SequenceGenerator(name = "SEQ_SEARCH", sequenceName = "SEQ_SEARCH")
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@Column(name = "PID")
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private Long myId;
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@OneToMany(mappedBy="mySearch")
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@OneToMany(mappedBy = "mySearch")
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private Collection<SearchInclude> myIncludes;
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@Temporal(TemporalType.TIMESTAMP)
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@Column(name="LAST_UPDATED_HIGH", nullable=true, insertable=true, updatable=false)
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@Column(name = "LAST_UPDATED_HIGH", nullable = true, insertable = true, updatable = false)
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private Date myLastUpdatedHigh;
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@Temporal(TemporalType.TIMESTAMP)
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@Column(name="LAST_UPDATED_LOW", nullable=true, insertable=true, updatable=false)
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@Column(name = "LAST_UPDATED_LOW", nullable = true, insertable = true, updatable = false)
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private Date myLastUpdatedLow;
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@Column(name="NUM_FOUND", nullable=false)
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@Column(name = "NUM_FOUND", nullable = false)
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private int myNumFound;
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@Column(name="PREFERRED_PAGE_SIZE", nullable=true)
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@Column(name = "PREFERRED_PAGE_SIZE", nullable = true)
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private Integer myPreferredPageSize;
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@Column(name="RESOURCE_ID", nullable=true)
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@Column(name = "RESOURCE_ID", nullable = true)
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private Long myResourceId;
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@Column(name="RESOURCE_TYPE", length=200, nullable=true)
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@Column(name = "RESOURCE_TYPE", length = 200, nullable = true)
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private String myResourceType;
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@OneToMany(mappedBy="mySearch")
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@OneToMany(mappedBy = "mySearch")
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private Collection<SearchResult> myResults;
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@NotNull
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@Temporal(TemporalType.TIMESTAMP)
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@Column(name="SEARCH_LAST_RETURNED", nullable=false, updatable=false)
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@Column(name = "SEARCH_LAST_RETURNED", nullable = false, updatable = false)
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private Date mySearchLastReturned;
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@Lob()
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@Basic(fetch=FetchType.LAZY)
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@Column(name="SEARCH_QUERY_STRING", nullable=true, updatable=false, length = MAX_SEARCH_QUERY_STRING)
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@Basic(fetch = FetchType.LAZY)
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@Column(name = "SEARCH_QUERY_STRING", nullable = true, updatable = false, length = MAX_SEARCH_QUERY_STRING)
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private String mySearchQueryString;
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@Column(name="SEARCH_QUERY_STRING_HASH", nullable=true, updatable=false)
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@Column(name = "SEARCH_QUERY_STRING_HASH", nullable = true, updatable = false)
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private Integer mySearchQueryStringHash;
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@Enumerated(EnumType.ORDINAL)
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@Column(name="SEARCH_TYPE", nullable=false)
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@Column(name = "SEARCH_TYPE", nullable = false)
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private SearchTypeEnum mySearchType;
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@Enumerated(EnumType.STRING)
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@Column(name="SEARCH_STATUS", nullable=false, length=10)
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@Column(name = "SEARCH_STATUS", nullable = false, length = 10)
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private SearchStatusEnum myStatus;
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|
||||
@Column(name="TOTAL_COUNT", nullable=true)
|
||||
@Column(name = "TOTAL_COUNT", nullable = true)
|
||||
private Integer myTotalCount;
|
||||
|
||||
@Column(name="SEARCH_UUID", length= UUID_COLUMN_LENGTH, nullable=false, updatable=false)
|
||||
|
||||
@Column(name = "SEARCH_UUID", length = UUID_COLUMN_LENGTH, nullable = false, updatable = false)
|
||||
private String myUuid;
|
||||
|
||||
|
||||
/**
|
||||
* Constructor
|
||||
*/
|
||||
|
|
@ -133,21 +123,33 @@ public class Search implements Serializable {
|
|||
return myCreated;
|
||||
}
|
||||
|
||||
public void setCreated(Date theCreated) {
|
||||
myCreated = theCreated;
|
||||
}
|
||||
|
||||
public Integer getFailureCode() {
|
||||
return myFailureCode;
|
||||
}
|
||||
|
||||
public void setFailureCode(Integer theFailureCode) {
|
||||
myFailureCode = theFailureCode;
|
||||
}
|
||||
|
||||
public String getFailureMessage() {
|
||||
return myFailureMessage;
|
||||
}
|
||||
|
||||
public void setFailureMessage(String theFailureMessage) {
|
||||
myFailureMessage = left(theFailureMessage, FAILURE_MESSAGE_LENGTH);
|
||||
}
|
||||
|
||||
public Long getId() {
|
||||
return myId;
|
||||
}
|
||||
|
||||
public Collection<SearchInclude> getIncludes() {
|
||||
if (myIncludes == null) {
|
||||
myIncludes = new ArrayList<SearchInclude>();
|
||||
myIncludes = new ArrayList<>();
|
||||
}
|
||||
return myIncludes;
|
||||
}
|
||||
|
|
@ -160,6 +162,16 @@ public class Search implements Serializable {
|
|||
}
|
||||
}
|
||||
|
||||
public void setLastUpdated(DateRangeParam theLastUpdated) {
|
||||
if (theLastUpdated == null) {
|
||||
myLastUpdatedLow = null;
|
||||
myLastUpdatedHigh = null;
|
||||
} else {
|
||||
myLastUpdatedLow = theLastUpdated.getLowerBoundAsInstant();
|
||||
myLastUpdatedHigh = theLastUpdated.getUpperBoundAsInstant();
|
||||
}
|
||||
}
|
||||
|
||||
public Date getLastUpdatedHigh() {
|
||||
return myLastUpdatedHigh;
|
||||
}
|
||||
|
|
@ -172,90 +184,46 @@ public class Search implements Serializable {
|
|||
return myNumFound;
|
||||
}
|
||||
|
||||
public void setNumFound(int theNumFound) {
|
||||
myNumFound = theNumFound;
|
||||
}
|
||||
|
||||
public Integer getPreferredPageSize() {
|
||||
return myPreferredPageSize;
|
||||
}
|
||||
|
||||
public void setPreferredPageSize(Integer thePreferredPageSize) {
|
||||
myPreferredPageSize = thePreferredPageSize;
|
||||
}
|
||||
|
||||
public Long getResourceId() {
|
||||
return myResourceId;
|
||||
}
|
||||
|
||||
public String getResourceType() {
|
||||
return myResourceType;
|
||||
}
|
||||
|
||||
public Date getSearchLastReturned() {
|
||||
return mySearchLastReturned;
|
||||
}
|
||||
|
||||
public String getSearchQueryString() {
|
||||
return mySearchQueryString;
|
||||
}
|
||||
|
||||
public SearchTypeEnum getSearchType() {
|
||||
return mySearchType;
|
||||
}
|
||||
|
||||
public SearchStatusEnum getStatus() {
|
||||
return myStatus;
|
||||
}
|
||||
|
||||
public Integer getTotalCount() {
|
||||
return myTotalCount;
|
||||
}
|
||||
|
||||
public String getUuid() {
|
||||
return myUuid;
|
||||
}
|
||||
|
||||
public void setCreated(Date theCreated) {
|
||||
myCreated = theCreated;
|
||||
}
|
||||
|
||||
|
||||
public void setFailureCode(Integer theFailureCode) {
|
||||
myFailureCode = theFailureCode;
|
||||
}
|
||||
|
||||
public void setFailureMessage(String theFailureMessage) {
|
||||
myFailureMessage = left(theFailureMessage, FAILURE_MESSAGE_LENGTH);
|
||||
}
|
||||
|
||||
public void setLastUpdated(Date theLowerBound, Date theUpperBound) {
|
||||
myLastUpdatedLow = theLowerBound;
|
||||
myLastUpdatedHigh = theUpperBound;
|
||||
}
|
||||
public void setLastUpdated(DateRangeParam theLastUpdated) {
|
||||
if (theLastUpdated == null) {
|
||||
myLastUpdatedLow = null;
|
||||
myLastUpdatedHigh = null;
|
||||
} else {
|
||||
myLastUpdatedLow = theLastUpdated.getLowerBoundAsInstant();
|
||||
myLastUpdatedHigh = theLastUpdated.getUpperBoundAsInstant();
|
||||
}
|
||||
}
|
||||
|
||||
public void setNumFound(int theNumFound) {
|
||||
myNumFound = theNumFound;
|
||||
}
|
||||
|
||||
public void setPreferredPageSize(Integer thePreferredPageSize) {
|
||||
myPreferredPageSize = thePreferredPageSize;
|
||||
}
|
||||
|
||||
public void setResourceId(Long theResourceId) {
|
||||
myResourceId = theResourceId;
|
||||
}
|
||||
|
||||
public String getResourceType() {
|
||||
return myResourceType;
|
||||
}
|
||||
|
||||
public void setResourceType(String theResourceType) {
|
||||
myResourceType = theResourceType;
|
||||
}
|
||||
|
||||
public Date getSearchLastReturned() {
|
||||
return mySearchLastReturned;
|
||||
}
|
||||
|
||||
public void setSearchLastReturned(Date theDate) {
|
||||
mySearchLastReturned = theDate;
|
||||
}
|
||||
|
||||
public String getSearchQueryString() {
|
||||
return mySearchQueryString;
|
||||
}
|
||||
|
||||
public void setSearchQueryString(String theSearchQueryString) {
|
||||
if (theSearchQueryString != null && theSearchQueryString.length() > MAX_SEARCH_QUERY_STRING) {
|
||||
mySearchQueryString = null;
|
||||
|
|
@ -264,26 +232,47 @@ public class Search implements Serializable {
|
|||
}
|
||||
}
|
||||
|
||||
public void setSearchQueryStringHash(Integer theSearchQueryStringHash) {
|
||||
mySearchQueryStringHash = theSearchQueryStringHash;
|
||||
public SearchTypeEnum getSearchType() {
|
||||
return mySearchType;
|
||||
}
|
||||
|
||||
public void setSearchType(SearchTypeEnum theSearchType) {
|
||||
mySearchType = theSearchType;
|
||||
}
|
||||
|
||||
public SearchStatusEnum getStatus() {
|
||||
return myStatus;
|
||||
}
|
||||
|
||||
public void setStatus(SearchStatusEnum theStatus) {
|
||||
myStatus = theStatus;
|
||||
}
|
||||
|
||||
public Integer getTotalCount() {
|
||||
return myTotalCount;
|
||||
}
|
||||
|
||||
public void setTotalCount(Integer theTotalCount) {
|
||||
myTotalCount = theTotalCount;
|
||||
}
|
||||
|
||||
public String getUuid() {
|
||||
return myUuid;
|
||||
}
|
||||
|
||||
public void setUuid(String theUuid) {
|
||||
myUuid = theUuid;
|
||||
}
|
||||
|
||||
public void setLastUpdated(Date theLowerBound, Date theUpperBound) {
|
||||
myLastUpdatedLow = theLowerBound;
|
||||
myLastUpdatedHigh = theUpperBound;
|
||||
}
|
||||
|
||||
public void setSearchQueryStringHash(Integer theSearchQueryStringHash) {
|
||||
mySearchQueryStringHash = theSearchQueryStringHash;
|
||||
}
|
||||
|
||||
private Set<Include> toIncList(boolean theWantReverse) {
|
||||
HashSet<Include> retVal = new HashSet<Include>();
|
||||
for (SearchInclude next : getIncludes()) {
|
||||
|
|
@ -301,5 +290,8 @@ public class Search implements Serializable {
|
|||
public Set<Include> toRevIncludesList() {
|
||||
return toIncList(true);
|
||||
}
|
||||
|
||||
|
||||
public void addInclude(SearchInclude theInclude) {
|
||||
getIncludes().add(theInclude);
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -32,6 +32,7 @@ import ca.uhn.fhir.model.primitive.InstantDt;
|
|||
import ca.uhn.fhir.rest.api.server.IBundleProvider;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
import org.springframework.transaction.PlatformTransactionManager;
|
||||
import org.springframework.transaction.TransactionDefinition;
|
||||
import org.springframework.transaction.TransactionStatus;
|
||||
import org.springframework.transaction.support.TransactionCallback;
|
||||
import org.springframework.transaction.support.TransactionCallbackWithoutResult;
|
||||
|
|
@ -134,13 +135,8 @@ public class PersistedJpaBundleProvider implements IBundleProvider {
|
|||
final List<Long> pidsSubList = mySearchCoordinatorSvc.getResources(myUuid, theFromIndex, theToIndex);
|
||||
|
||||
TransactionTemplate template = new TransactionTemplate(myPlatformTransactionManager);
|
||||
template.setPropagationBehavior(TransactionTemplate.PROPAGATION_REQUIRED);
|
||||
return template.execute(new TransactionCallback<List<IBaseResource>>() {
|
||||
@Override
|
||||
public List<IBaseResource> doInTransaction(TransactionStatus theStatus) {
|
||||
return toResourceList(sb, pidsSubList);
|
||||
}
|
||||
});
|
||||
template.setPropagationBehavior(TransactionDefinition.PROPAGATION_REQUIRED);
|
||||
return template.execute(theStatus -> toResourceList(sb, pidsSubList));
|
||||
}
|
||||
|
||||
private void ensureDependenciesInjected() {
|
||||
|
|
@ -273,8 +269,8 @@ public class PersistedJpaBundleProvider implements IBundleProvider {
|
|||
List<IBaseResource> toResourceList(ISearchBuilder sb, List<Long> pidsSubList) {
|
||||
Set<Long> includedPids = new HashSet<>();
|
||||
if (mySearchEntity.getSearchType() == SearchTypeEnum.SEARCH) {
|
||||
includedPids.addAll(sb.loadReverseIncludes(myDao, myContext, myEntityManager, pidsSubList, mySearchEntity.toRevIncludesList(), true, mySearchEntity.getLastUpdated()));
|
||||
includedPids.addAll(sb.loadReverseIncludes(myDao, myContext, myEntityManager, pidsSubList, mySearchEntity.toIncludesList(), false, mySearchEntity.getLastUpdated()));
|
||||
includedPids.addAll(sb.loadIncludes(myDao, myContext, myEntityManager, pidsSubList, mySearchEntity.toRevIncludesList(), true, mySearchEntity.getLastUpdated()));
|
||||
includedPids.addAll(sb.loadIncludes(myDao, myContext, myEntityManager, pidsSubList, mySearchEntity.toIncludesList(), false, mySearchEntity.getLastUpdated()));
|
||||
}
|
||||
|
||||
// Execute the query and make sure we return distinct results
|
||||
|
|
|
|||
|
|
@ -258,8 +258,8 @@ public class SearchCoordinatorSvcImpl implements ISearchCoordinatorSvc {
|
|||
* individually for pages as we return them to clients
|
||||
*/
|
||||
final Set<Long> includedPids = new HashSet<Long>();
|
||||
includedPids.addAll(sb.loadReverseIncludes(theCallingDao, myContext, myEntityManager, pids, theParams.getRevIncludes(), true, theParams.getLastUpdated()));
|
||||
includedPids.addAll(sb.loadReverseIncludes(theCallingDao, myContext, myEntityManager, pids, theParams.getIncludes(), false, theParams.getLastUpdated()));
|
||||
includedPids.addAll(sb.loadIncludes(theCallingDao, myContext, myEntityManager, pids, theParams.getRevIncludes(), true, theParams.getLastUpdated()));
|
||||
includedPids.addAll(sb.loadIncludes(theCallingDao, myContext, myEntityManager, pids, theParams.getIncludes(), false, theParams.getLastUpdated()));
|
||||
|
||||
List<IBaseResource> resources = new ArrayList<IBaseResource>();
|
||||
sb.loadResourcesByPid(pids, resources, includedPids, false, myEntityManager, myContext, theCallingDao);
|
||||
|
|
@ -336,10 +336,10 @@ public class SearchCoordinatorSvcImpl implements ISearchCoordinatorSvc {
|
|||
search.setSearchQueryStringHash(queryString.hashCode());
|
||||
|
||||
for (Include next : theParams.getIncludes()) {
|
||||
search.getIncludes().add(new SearchInclude(search, next.getValue(), false, next.isRecurse()));
|
||||
search.addInclude(new SearchInclude(search, next.getValue(), false, next.isRecurse()));
|
||||
}
|
||||
for (Include next : theParams.getRevIncludes()) {
|
||||
search.getIncludes().add(new SearchInclude(search, next.getValue(), true, next.isRecurse()));
|
||||
search.addInclude(new SearchInclude(search, next.getValue(), true, next.isRecurse()));
|
||||
}
|
||||
|
||||
SearchTask task = new SearchTask(search, theCallingDao, theParams, theResourceType, searchUuid);
|
||||
|
|
|
|||
|
|
@ -47,7 +47,7 @@ import static org.hamcrest.Matchers.*;
|
|||
import static org.junit.Assert.*;
|
||||
import static org.mockito.Mockito.mock;
|
||||
|
||||
@SuppressWarnings("unchecked")
|
||||
@SuppressWarnings({"unchecked", "Duplicates"})
|
||||
public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDaoR4SearchNoFtTest.class);
|
||||
|
||||
|
|
@ -145,6 +145,59 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
|
|||
assertThat(ids, empty());
|
||||
}
|
||||
|
||||
/**
|
||||
* See #1053
|
||||
*/
|
||||
@Test
|
||||
public void testLastUpdateShouldntApplyToIncludes() {
|
||||
SearchParameterMap map;
|
||||
List<String> ids;
|
||||
|
||||
Date beforeAll = new Date();
|
||||
ca.uhn.fhir.jpa.util.TestUtil.sleepAtLeast(100);
|
||||
|
||||
Organization org = new Organization();
|
||||
org.setName("O1");
|
||||
org.setId("O1");
|
||||
myOrganizationDao.update(org);
|
||||
ca.uhn.fhir.jpa.util.TestUtil.sleepAtLeast(100);
|
||||
|
||||
Date beforePatient = new Date();
|
||||
ca.uhn.fhir.jpa.util.TestUtil.sleepAtLeast(100);
|
||||
|
||||
Patient p = new Patient();
|
||||
p.setId("P1");
|
||||
p.setActive(true);
|
||||
p.setManagingOrganization(new Reference("Organization/O1"));
|
||||
myPatientDao.update(p);
|
||||
|
||||
ca.uhn.fhir.jpa.util.TestUtil.sleepAtLeast(100);
|
||||
Date afterAll = new Date();
|
||||
|
||||
// Search with between date (should still return Organization even though
|
||||
// it was created before that date, since it's an include)
|
||||
map = new SearchParameterMap();
|
||||
map.setLastUpdated(new DateRangeParam().setLowerBoundInclusive(beforePatient));
|
||||
map.addInclude(Patient.INCLUDE_ORGANIZATION);
|
||||
ids = toUnqualifiedVersionlessIdValues(myPatientDao.search(map));
|
||||
assertThat(ids, contains("Patient/P1", "Organization/O1"));
|
||||
|
||||
// Search before everything
|
||||
map = new SearchParameterMap();
|
||||
map.setLastUpdated(new DateRangeParam().setLowerBoundInclusive(beforeAll));
|
||||
map.addInclude(Patient.INCLUDE_ORGANIZATION);
|
||||
ids = toUnqualifiedVersionlessIdValues(myPatientDao.search(map));
|
||||
assertThat(ids, contains("Patient/P1", "Organization/O1"));
|
||||
|
||||
// Search after everything
|
||||
map = new SearchParameterMap();
|
||||
map.setLastUpdated(new DateRangeParam().setLowerBoundInclusive(afterAll));
|
||||
map.addInclude(Patient.INCLUDE_ORGANIZATION);
|
||||
ids = toUnqualifiedVersionlessIdValues(myPatientDao.search(map));
|
||||
assertThat(ids, empty());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testEverythingTimings() {
|
||||
String methodName = "testEverythingTimings";
|
||||
|
|
|
|||
|
|
@ -1,31 +1,5 @@
|
|||
package ca.uhn.fhir.rest.param;
|
||||
|
||||
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.APPROXIMATE;
|
||||
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.EQUAL;
|
||||
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.GREATERTHAN;
|
||||
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.GREATERTHAN_OR_EQUALS;
|
||||
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.LESSTHAN;
|
||||
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.LESSTHAN_OR_EQUALS;
|
||||
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.NOT_EQUAL;
|
||||
import static com.google.common.collect.Lists.newArrayList;
|
||||
import static java.lang.System.currentTimeMillis;
|
||||
import static java.util.concurrent.TimeUnit.SECONDS;
|
||||
import static org.hamcrest.core.Is.is;
|
||||
import static org.hamcrest.core.IsEqual.equalTo;
|
||||
import static org.hamcrest.core.IsNot.not;
|
||||
import static org.junit.Assert.assertEquals;
|
||||
import static org.junit.Assert.assertNotNull;
|
||||
import static org.junit.Assert.assertThat;
|
||||
|
||||
import java.text.ParseException;
|
||||
import java.text.SimpleDateFormat;
|
||||
import java.util.*;
|
||||
import java.util.concurrent.TimeUnit;
|
||||
|
||||
import com.google.common.testing.EqualsTester;
|
||||
import org.junit.AfterClass;
|
||||
import org.junit.Test;
|
||||
|
||||
import ca.uhn.fhir.context.FhirContext;
|
||||
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
|
||||
import ca.uhn.fhir.model.primitive.DateTimeDt;
|
||||
|
|
@ -33,18 +7,57 @@ import ca.uhn.fhir.model.primitive.InstantDt;
|
|||
import ca.uhn.fhir.rest.api.QualifiedParamList;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
import ca.uhn.fhir.util.TestUtil;
|
||||
import com.google.common.testing.EqualsTester;
|
||||
import org.junit.AfterClass;
|
||||
import org.junit.Test;
|
||||
|
||||
import java.text.ParseException;
|
||||
import java.text.SimpleDateFormat;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Date;
|
||||
import java.util.List;
|
||||
import java.util.TimeZone;
|
||||
|
||||
import static ca.uhn.fhir.rest.param.ParamPrefixEnum.*;
|
||||
import static java.lang.System.currentTimeMillis;
|
||||
import static java.util.concurrent.TimeUnit.SECONDS;
|
||||
import static org.junit.Assert.assertEquals;
|
||||
import static org.junit.Assert.assertNotNull;
|
||||
|
||||
public class DateRangeParamTest {
|
||||
|
||||
private static FhirContext ourCtx = FhirContext.forDstu3();
|
||||
private static final SimpleDateFormat ourFmt;
|
||||
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(DateRangeParamTest.class);
|
||||
private static FhirContext ourCtx = FhirContext.forDstu3();
|
||||
|
||||
static {
|
||||
ourFmt = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss.SSSS");
|
||||
}
|
||||
|
||||
@AfterClass
|
||||
public static void afterClassClearContext() {
|
||||
TestUtil.clearAllStaticFieldsForUnitTest();
|
||||
}
|
||||
|
||||
private static DateRangeParam create(String theLower, String theUpper) throws InvalidRequestException {
|
||||
DateRangeParam p = new DateRangeParam();
|
||||
List<QualifiedParamList> tokens = new ArrayList<QualifiedParamList>();
|
||||
tokens.add(QualifiedParamList.singleton(null, theLower));
|
||||
if (theUpper != null) {
|
||||
tokens.add(QualifiedParamList.singleton(null, theUpper));
|
||||
}
|
||||
p.setValuesAsQueryTokens(ourCtx, null, tokens);
|
||||
return p;
|
||||
}
|
||||
|
||||
public static Date parse(String theString) throws ParseException {
|
||||
return ourFmt.parse(theString);
|
||||
}
|
||||
|
||||
public static Date parseM1(String theString) throws ParseException {
|
||||
return new Date(ourFmt.parse(theString).getTime() - 1L);
|
||||
}
|
||||
|
||||
private DateRangeParam create(String theString) {
|
||||
return new DateRangeParam(new DateParam(theString));
|
||||
}
|
||||
|
|
@ -85,7 +98,7 @@ public class DateRangeParamTest {
|
|||
assertEquals(parseM1("2011-01-02 00:00:00.0000"), create(">=2011-01-01", "<2011-01-02").getUpperBoundAsInstant());
|
||||
assertEquals(parse("2011-01-02 00:00:00.0000"), create(">2011-01-01", "<=2011-01-02").getLowerBoundAsInstant());
|
||||
assertEquals(parseM1("2011-01-03 00:00:00.0000"), create(">2011-01-01", "<=2011-01-02").getUpperBoundAsInstant());
|
||||
|
||||
|
||||
assertEquals(parse("2011-01-01 00:00:00.0000"), create("ge2011-01-01", "lt2011-01-02").getLowerBoundAsInstant());
|
||||
assertEquals(parseM1("2011-01-02 00:00:00.0000"), create("ge2011-01-01", "lt2011-01-02").getUpperBoundAsInstant());
|
||||
assertEquals(parse("2011-01-02 00:00:00.0000"), create("gt2011-01-01", "le2011-01-02").getLowerBoundAsInstant());
|
||||
|
|
@ -119,6 +132,26 @@ public class DateRangeParamTest {
|
|||
assertEquals(parseM1("2011-01-02 00:00:00.0000"), create("2011-01-01").getUpperBoundAsInstant());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSetBoundsWithDatesInclusive() {
|
||||
DateRangeParam range = new DateRangeParam();
|
||||
range.setLowerBoundInclusive(new Date());
|
||||
range.setUpperBoundInclusive(new Date());
|
||||
|
||||
assertEquals(ParamPrefixEnum.GREATERTHAN_OR_EQUALS, range.getLowerBound().getPrefix());
|
||||
assertEquals(ParamPrefixEnum.LESSTHAN_OR_EQUALS, range.getUpperBound().getPrefix());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSetBoundsWithDatesExclusive() {
|
||||
DateRangeParam range = new DateRangeParam();
|
||||
range.setLowerBoundExclusive(new Date());
|
||||
range.setUpperBoundExclusive(new Date());
|
||||
|
||||
assertEquals(ParamPrefixEnum.GREATERTHAN, range.getLowerBound().getPrefix());
|
||||
assertEquals(ParamPrefixEnum.LESSTHAN, range.getUpperBound().getPrefix());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testOrList() {
|
||||
assertNotNull(new DateOrListParam().newInstance());
|
||||
|
|
@ -195,46 +228,22 @@ public class DateRangeParamTest {
|
|||
assertEquals(parseM1("2014-01-01 00:00:00.0000"), create("gt2011", "le2013").getUpperBoundAsInstant());
|
||||
}
|
||||
|
||||
@AfterClass
|
||||
public static void afterClassClearContext() {
|
||||
TestUtil.clearAllStaticFieldsForUnitTest();
|
||||
}
|
||||
|
||||
@Test()
|
||||
public void testEqualsAndHashCode() {
|
||||
Date lowerBound = new Date(currentTimeMillis());
|
||||
Date upperBound = new Date(lowerBound.getTime() + SECONDS.toMillis(1));
|
||||
new EqualsTester()
|
||||
.addEqualityGroup(new DateRangeParam(),
|
||||
new DateRangeParam((Date) null, (Date) null))
|
||||
new DateRangeParam((Date) null, (Date) null))
|
||||
.addEqualityGroup(new DateRangeParam(lowerBound, upperBound),
|
||||
new DateRangeParam(new DateParam(GREATERTHAN_OR_EQUALS, lowerBound), new DateParam(LESSTHAN_OR_EQUALS, upperBound)))
|
||||
new DateRangeParam(new DateParam(GREATERTHAN_OR_EQUALS, lowerBound), new DateParam(LESSTHAN_OR_EQUALS, upperBound)))
|
||||
.addEqualityGroup(new DateRangeParam(new DateParam(EQUAL, lowerBound)),
|
||||
new DateRangeParam(new DateParam(null, lowerBound)),
|
||||
new DateRangeParam(new DateParam(EQUAL, lowerBound), new DateParam(EQUAL, lowerBound)))
|
||||
new DateRangeParam(new DateParam(null, lowerBound)),
|
||||
new DateRangeParam(new DateParam(EQUAL, lowerBound), new DateParam(EQUAL, lowerBound)))
|
||||
.addEqualityGroup(new DateRangeParam(lowerBound, null),
|
||||
new DateRangeParam(new DateParam(GREATERTHAN_OR_EQUALS, lowerBound), null))
|
||||
new DateRangeParam(new DateParam(GREATERTHAN_OR_EQUALS, lowerBound), null))
|
||||
.addEqualityGroup(new DateRangeParam(null, upperBound),
|
||||
new DateRangeParam(null, new DateParam(LESSTHAN_OR_EQUALS, upperBound)))
|
||||
new DateRangeParam(null, new DateParam(LESSTHAN_OR_EQUALS, upperBound)))
|
||||
.testEquals();
|
||||
}
|
||||
|
||||
private static DateRangeParam create(String theLower, String theUpper) throws InvalidRequestException {
|
||||
DateRangeParam p = new DateRangeParam();
|
||||
List<QualifiedParamList> tokens = new ArrayList<QualifiedParamList>();
|
||||
tokens.add(QualifiedParamList.singleton(null, theLower));
|
||||
if (theUpper != null) {
|
||||
tokens.add(QualifiedParamList.singleton(null, theUpper));
|
||||
}
|
||||
p.setValuesAsQueryTokens(ourCtx, null, tokens);
|
||||
return p;
|
||||
}
|
||||
|
||||
public static Date parse(String theString) throws ParseException {
|
||||
return ourFmt.parse(theString);
|
||||
}
|
||||
|
||||
public static Date parseM1(String theString) throws ParseException {
|
||||
return new Date(ourFmt.parse(theString).getTime() - 1L);
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -249,6 +249,11 @@
|
|||
queue (only the ID), which should reduce the memory/disk footprint of the queue
|
||||
when it grows long.
|
||||
</action>
|
||||
<action type="fix" issue="1053">
|
||||
A bug was fixed in JPA server searches: When performing a search with a _lastUpdate
|
||||
filter, the filter was applied to any _include values, which it should not have been.
|
||||
Thanks to Deepak Garg for reporting!
|
||||
</action>
|
||||
</release>
|
||||
<release version="3.4.0" date="2018-05-28">
|
||||
<action type="add">
|
||||
|
|
|
|||
Loading…
Reference in New Issue