Update version of the Clinical Reasoning module (#5045)

* Update version of the Clinical Reasoning module

* cleanup

* Add changelog

* Update snapshot

* Inc version
This commit is contained in:
Brenin Rhodes 2023-07-07 08:05:10 -06:00 committed by GitHub
parent 10af1434fc
commit eb06b473b9
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82 changed files with 82 additions and 364 deletions

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@ -5,7 +5,7 @@
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@ -5,7 +5,7 @@
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@ -4,7 +4,7 @@
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@ -0,0 +1,4 @@
---
type: change
issue: 5054
title: "Update the Clinical Reasoning module to the Pre 4 release of version 3.0.0."

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@ -11,7 +11,7 @@
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@ -7,7 +7,7 @@
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@ -7,7 +7,7 @@
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@ -7,7 +7,7 @@
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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@ -65,15 +65,8 @@ public class CrProperties {
private MeasureReportConfiguration myMeasureReportConfiguration;
private MeasureEvaluationOptions myMeasureEvaluationOptions;
public static final int DEFAULT_THREADS_FOR_MEASURE_EVAL = 4;
public static final int DEFAULT_THREADS_BATCH_SIZE = 250;
public static final boolean DEFAULT_THREADS_ENABLED_FOR_MEASURE_EVAL = true;
public MeasureProperties() {
myMeasureEvaluationOptions = MeasureEvaluationOptions.defaultOptions();
myMeasureEvaluationOptions.setNumThreads(DEFAULT_THREADS_FOR_MEASURE_EVAL);
myMeasureEvaluationOptions.setThreadedBatchSize(DEFAULT_THREADS_BATCH_SIZE);
myMeasureEvaluationOptions.setThreadedEnabled(DEFAULT_THREADS_ENABLED_FOR_MEASURE_EVAL);
};

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@ -19,35 +19,6 @@ public class PlanDefinitionOperationsProviderTest extends BaseCrR4Test {
@Autowired
PlanDefinitionOperationsProvider planDefinitionOperationsProvider;
@Test
void testCdsHooksMultiAction() {
loadBundle("ca/uhn/fhir/cr/r4/cds-hooks-multi-action/cds_hooks_multiple_actions_patient_data.json");
loadBundle("ca/uhn/fhir/cr/r4/cds-hooks-multi-action/cds_hooks_multiple_actions_plan_definition.json");
var requestDetails = setupRequestDetails();
var planDefinitionID = new IdType("PlanDefinition","CdsHooksMultipleActions-PlanDefinition-1.0.0");
var patientID = "patient-CdsHooksMultipleActions";
var result = this.planDefinitionOperationsProvider.apply(planDefinitionID, null, null, patientID,
null, null, null, null, null,
null, null, null, null, null,
null, null, null,
requestDetails);
assertNotNull(result);
var carePlan = readResource(CarePlan.class, "ca/uhn/fhir/cr/r4/cds-hooks-multi-action/cds_hooks_multiple_actions_careplan.json");
assertEquals(ourParser.encodeResourceToString(carePlan), ourParser.encodeResourceToString(result));
var resultR5 = this.planDefinitionOperationsProvider.applyR5(planDefinitionID, null, null, patientID,
null, null, null, null, null,
null, null, null, null, null,
null, null, null,
requestDetails);
var bundle = readResource(Bundle.class, "ca/uhn/fhir/cr/r4/cds-hooks-multi-action/cds_hooks_multiple_actions_bundle.json");
assertEquals(ourParser.encodeResourceToString(bundle), ourParser.encodeResourceToString(resultR5));
}
@Test
void testGenerateQuestionnaire() {
loadBundle("ca/uhn/fhir/cr/r4/Bundle-GenerateQuestionnaireContent.json");

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@ -1,35 +0,0 @@
{
"resourceType": "Bundle",
"id": "CdsHooksMultipleActions-PlanDefinition-1.0.0",
"type": "collection",
"entry": [
{
"resource": {
"resourceType": "RequestGroup",
"id": "CdsHooksMultipleActions-PlanDefinition-1.0.0",
"instantiatesCanonical": [
"http://example.com/PlanDefinition/CdsHooksMultipleActions-PlanDefinition-1.0.0"
],
"status": "draft",
"intent": "proposal",
"subject": {
"reference": "patient-CdsHooksMultipleActions"
},
"action": [
{
"title": "Summary",
"description": "Detail"
},
{
"title": "Summary 1",
"description": "Detail 1"
},
{
"title": "Child Monthly Routine Visit",
"description": "This action will performed every month for a patient < 5 years old. The start date with be next month after registration while the end date will be the 60th week after birth."
}
]
}
}
]
}

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@ -1,47 +0,0 @@
{
"resourceType": "CarePlan",
"id": "CdsHooksMultipleActions-PlanDefinition-1.0.0",
"contained": [
{
"resourceType": "RequestGroup",
"id": "CdsHooksMultipleActions-PlanDefinition-1.0.0",
"instantiatesCanonical": [
"http://example.com/PlanDefinition/CdsHooksMultipleActions-PlanDefinition-1.0.0"
],
"status": "draft",
"intent": "proposal",
"subject": {
"reference": "patient-CdsHooksMultipleActions"
},
"action": [
{
"title": "Summary",
"description": "Detail"
},
{
"title": "Summary 1",
"description": "Detail 1"
},
{
"title": "Child Monthly Routine Visit",
"description": "This action will performed every month for a patient < 5 years old. The start date with be next month after registration while the end date will be the 60th week after birth."
}
]
}
],
"instantiatesCanonical": [
"http://example.com/PlanDefinition/CdsHooksMultipleActions-PlanDefinition-1.0.0"
],
"status": "draft",
"intent": "proposal",
"subject": {
"reference": "patient-CdsHooksMultipleActions"
},
"activity": [
{
"reference": {
"reference": "#RequestGroup/CdsHooksMultipleActions-PlanDefinition-1.0.0"
}
}
]
}

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@ -1,28 +0,0 @@
{
"resourceType": "Bundle",
"id": "CdsHooksMultipleActions-PD-bundle",
"type": "transaction",
"entry": [
{
"resource": {
"resourceType": "Patient",
"id": "patient-CdsHooksMultipleActions",
"gender": "female",
"birthDate": "1982-01-07",
"name": [
{
"family": "Smith",
"given": [
"John",
"A."
]
}
]
},
"request": {
"method": "PUT",
"url": "Patient/patient-CdsHooksMultipleActions"
}
}
]
}

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@ -1,140 +0,0 @@
{
"resourceType": "Bundle",
"id": "CdsHooksMultipleActions-Plans-1.0.0",
"type": "transaction",
"entry": [
{
"resource": {
"resourceType": "Library",
"id": "CdsHooksMultipleActions",
"url": "http://example.com/Library/CdsHooksMultipleActions",
"version": "1.0.0",
"name": "CdsHooksMultipleActions",
"title": "CdsHooksMultipleActions",
"status": "draft",
"type": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/library-type",
"code": "logic-library"
}
]
},
"jurisdiction": [
{
"coding": [
{
"system": "urn:iso:std:iso:3166",
"code": "US",
"display": "United States of America"
}
],
"text": "United States of America"
}
],
"relatedArtifact": [
{
"type": "depends-on",
"display": "FHIR model information",
"resource": "http://fhir.org/guides/cqf/common/Library/FHIR-ModelInfo|4.0.1"
}
],
"content": [
{
"contentType": "text/cql",
"data": "bGlicmFyeSBDZHNIb29rc011bHRpcGxlQWN0aW9ucyB2ZXJzaW9uICcxLjAuMCcKCnVzaW5nIEZISVIgdmVyc2lvbiAnNC4wLjEnCgpjb250ZXh0IFBhdGllbnQKCmRlZmluZSAiSXMgQWN0aW9uIEFwcGxpY2FibGU/IjogdHJ1ZQoKZGVmaW5lICJHZXQgU3VtbWFyeSI6ICdTdW1tYXJ5JwoKZGVmaW5lICJHZXQgRGV0YWlsIjogJ0RldGFpbCcKCmRlZmluZSAiR2V0IFN1bW1hcnkgMSI6ICdTdW1tYXJ5IDEnCgpkZWZpbmUgIkdldCBEZXRhaWwgMSI6ICdEZXRhaWwgMSc="
}
]
},
"request": {
"method": "PUT",
"url": "Library/CdsHooksMultipleActions"
}
},
{
"resource": {
"resourceType": "PlanDefinition",
"id": "CdsHooksMultipleActions-PlanDefinition-1.0.0",
"url": "http://example.com/PlanDefinition/CdsHooksMultipleActions-PlanDefinition-1.0.0",
"name": "Cds Hooks Multiple Actions PlanDefinition",
"title": "Cds Hooks Multiple Actions PlanDefinition",
"status": "active",
"experimental": false,
"description": "This is a plan to test multiple actions",
"library": [
"http://example.com/Library/CdsHooksMultipleActions"
],
"action": [
{
"title": "Child Monthly Routine Visit",
"description": "This action will performed every month for a patient < 5 years old. The start date with be next month after registration while the end date will be the 60th week after birth.",
"priority": "routine",
"type": {
"coding": [
{
"code": "clinical-protocol",
"display": "Clinical Protocol"
}
]
},
"trigger": [
{
"type": "named-event",
"name": "patient-view"
}
],
"condition": [
{
"kind": "applicability",
"expression": {
"language": "text/cql.identifier",
"expression": "Is Action Applicable?"
}
}
],
"dynamicValue": [
{
"path": "action.title",
"expression": {
"language": "text/cql.identifier",
"expression": "Get Summary"
}
},
{
"path": "action.description",
"expression": {
"language": "text/cql.identifier",
"expression": "Get Detail"
}
}
],
"action": [
{
"dynamicValue": [
{
"path": "action.action.title",
"expression": {
"language": "text/cql.identifier",
"expression": "Get Summary 1"
}
},
{
"path": "action.action.description",
"expression": {
"language": "text/cql.identifier",
"expression": "Get Detail 1"
}
}
]
}
]
}
]
},
"request": {
"method": "PUT",
"url": "PlanDefinition/CdsHooksMultipleActions-PlanDefinition-1.0.0"
}
}
]
}

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@ -5,7 +5,7 @@
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<version>6.7.12-SNAPSHOT</version>
<version>6.7.13-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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@ -5,7 +5,7 @@
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<version>6.7.13-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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@ -5,7 +5,7 @@
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@ -5,7 +5,7 @@
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@ -4,7 +4,7 @@
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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@ -5,7 +5,7 @@
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<version>6.7.13-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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@ -5,7 +5,7 @@
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@ -5,7 +5,7 @@
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@ -5,7 +5,7 @@
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@ -5,7 +5,7 @@
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@ -7,7 +7,7 @@
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<name>HAPI-FHIR</name>
<description>An open-source implementation of the FHIR specification in Java.</description>
@ -982,7 +982,7 @@
<elastic_apm_version>1.28.4</elastic_apm_version>
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<clinical-reasoning.version>3.0.0-PRE2</clinical-reasoning.version>
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<fontawesomeVersion>5.4.1</fontawesomeVersion>

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